Resource Type:
Polypeptide
Name:
DCAR_026012
Identifier:
DCAR_026012.mRNA-protein
Sequence:
MVQKRPLVGDDSCFVSAKHPKFEDSNTQLVSVLEFPSKELGWKPYTSGKG
YDRATNHSLESDGDLDTDTCNITDFPKECTEYSSGGNSNSSWASSCTSEE
DLRLEVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPD
YQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSEVDIKFG
GICVTPMPDMELITFDDYKIGYGRKGCSCVDPGTITCVRHHVFQAREDLR
RLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDC
LSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDE
YVDSEDDTESEGEEDSVIEYPACQGFTGGNWTQASSHDDGTGVVKNASNQ
YSTEFSDLDGISSLSEIWRHNYYGSDPIFSPSRSTLLDVWGDHNFDYHSP
SATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPCDDEVWDFEYS
ACHNDVEFFSTSNVMEVFGVEDSSNKARDDKLQ*
Sequence Length:
534
Sequence Checksum:
949375b20efe6b95a6b9f773e79e8619
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_026012, derives from mRNA, DCAR_026012. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BAB4 (Myb-like domain-containing protein {ECO:0000259|PROSITE:PS50090})
HSP 1 Score: 693.73 bits (1789), Expect = 0.000e+0
Identity = 368/542 (67.90%), Postives = 422/542 (77.86%), Query Frame = 0
Match: A0A6L5BAB4 (Myb-like domain-containing protein {ECO:0000259|PROSITE:PS50090})
HSP 1 Score: 693.73 bits (1789), Expect = 0.000e+0
Identity = 368/542 (67.90%), Postives = 422/542 (77.86%), Query Frame = 0
Query: 1 MVQKRPLVGDDSCFVSAKHPKFEDSNTQ-LVSVLEFPSKELGWKPYTSGKGYDRATNHSLESDGDLDTDTCNITDFPKECTEYSSGGNSNSSWASSCTSEEDLRL-EVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPDYQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSEVDIKFGGICVTPMPDMELITFDDYKIGYGRKGCSCVDPGTITCVRHHVFQAREDLRRLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDCLSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEYVDSEDDTESEGEEDSVIEYPACQGFTGGNWTQASSHDDGTGVVKNASNQYSTEFSDLDGISSLSEIWRHNYYGSDPIFSPSRSTLLDVWGDHNFDYHSPSATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPC------DDEVWDFEYSACH-NDVEFFSTSNVMEVFGVEDSSNKARDDKLQ 533
MVQKRPL GDDSC VS+KH KF+ +N Q LVS LEFPS +LGWK YTSGKGYD + NH +E GD+ T+T NIT+ KEC EYSSGGNSNSSWASSCTSE+D R E P + SVPLEN++ DYPSR+L RSRD+YA L+ELPPQKLVPIG DYQA++PEW +G+ DS V+ KF G CVTPMP MELI DDYK GYGR C CVDPG+ITCVRHHV +ARED+RRLVGQECF GLGL+EMGEVVAE+WSEE+EQIFEEV++SN SSAGKNFWD LS VFPSRT MEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDE+ E+DTESE +EDSV+EYPAC+G G N A S + GTGVVK+ S+QY+T+ DLDGI SLSE W+HN YG+ P+FSPS+ TL+DVWG+H+ + HSPS TG+ELQA+K+KAGHSKSFAA FN SAKGG+D F PC DD+VWDF Y+ C NDVEF STSNVMEVFGVED +KARDDKL
Sbjct: 1 MVQKRPLAGDDSCVVSSKHAKFDHNNRQHLVSFLEFPS-DLGWKTYTSGKGYDGSANHLVE--GDVYTETRNITELHKECAEYSSGGNSNSSWASSCTSEDDFRFSEAPVHKSVPLENDEPDYPSRTLGRSRDAYARLMELPPQKLVPIGSDYQADIPEWRSYGSN---------------------------DSGVNNKFCGTCVTPMPAMELIMCDDYKSGYGRSICICVDPGSITCVRHHVVKAREDIRRLVGQECFAGLGLNEMGEVVAERWSEEDEQIFEEVVMSNTSSAGKNFWDRLSEVFPSRTEMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEFEGCENDTESEEDEDSVVEYPACEGIPGWNGINAGSCEYGTGVVKDTSHQYNTDIGDLDGIYSLSETWKHNDYGTYPMFSPSQ-TLVDVWGNHDLNNHSPSGTGSELQASKMKAGHSKSFAATFNGASAKGGHDFFPGPCDDKVWGDDKVWDFGYAPCRSNDVEFLSTSNVMEVFGVEDFIDKARDDKLH 511
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AA07 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52758.1}))
HSP 1 Score: 379.407 bits (973), Expect = 1.992e-123
Identity = 241/546 (44.14%), Postives = 318/546 (58.24%), Query Frame = 0
Match: A0A5B7AA07 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52758.1}))
HSP 1 Score: 379.407 bits (973), Expect = 1.992e-123
Identity = 241/546 (44.14%), Postives = 318/546 (58.24%), Query Frame = 0
Query: 1 MVQKRPLVGDDSCFV-SAKHPKFEDSNTQLVSVLEF-PSKELGWKPYTSGKGYDRATNHSLESDGDLDTDTCNITDFPKECTEY---SSGGNSNSSWASSCTSEEDLRLEVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPDYQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSEVDIKFGGICVTPMPDMELITFDDYKIGYGRKGCSCVDPGTITCVRHHVFQAREDLRRLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDCLSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEYVDSEDDTESEGEEDSVIEYPACQGFTGGNWTQA-SSHDDGTGVVKNASNQY-STEFSDLDGISSLSEI----WRHNYYGSDPIFSPSRSTLLDVWGDHNF--DYHSPSATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPCDDEVWDFEYSAC-HNDVEFFSTSNVM-EVFGVEDSSNKARDDK 531
MVQKRP GD+ + S+KHP+ + + QLVSVLEF PS KP TSG+G + ++D D + IT+ P EC++ +SG SNSSWA+S TSEED R + PF+ + E + P R+L S + Y +LE PPQKLV IGPD+QA+VPEW P G K ++ CS ++ P+ S D E K GICV P P+ E T++ K+G GR C C D G++ CVR H+ +ARE L+R +G+E F LG +MGEVVAEKWSEEEE +F EV+ SNP+S GK FWD LS FP RT IVSYYFNVF+L++RA+QNR MNIDSD+DEWQ S+D D E +EDSVIE P G N Q SH+ GV + Y + +F GI+++SE N P+ L DV DH+ D + S TGA + ++KA +SK + +FN ++ GG+D LE CD +VWD Y C N+V+F T N++ EVFGV + K RD K
Sbjct: 1 MVQKRPF-GDEELYKPSSKHPRQLEYSNQLVSVLEFVPSDNAAQKPQTSGEG--EGSFAKSKTDDDEKIASQIITELP-ECSDKDIETSGCISNSSWATSSTSEEDARSKAPFHLLLSPEYYNPGRPIRALIYSEEIYHPVLEYPPQKLVSIGPDFQADVPEWRPQGTKSTANCSDLSDPTNLSPQASESNLVDGNSDEN--KLAGICVIPSPESEPSTYNGNKVGDGRTDCCCQDAGSVRCVRQHIMEAREKLKRTLGKERFEELGFSDMGEVVAEKWSEEEEHLFHEVVFSNPASLGKKFWDHLSMAFPFRTKKNIVSYYFNVFLLQRRAEQNRCDPMNIDSDNDEWQGSDDSGDDEFGTIEE--DEDSVIESPVYHDDPGHNEIQGDESHEYDEGVAHATCDHYENVDFGSEKGITNVSETCPMKLLDNRSSGPPLQHLPGKILWDVGVDHDAQDDSCTSSDTGAAPRVAQVKANNSKPWLGSFNGINGGGGHDYALEHCDSKVWDVGYLTCPKNEVDFLPTCNMIEEVFGVGAWNCKTRDGK 538
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A7N1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52759.1}))
HSP 1 Score: 376.711 bits (966), Expect = 1.163e-122
Identity = 242/539 (44.90%), Postives = 306/539 (56.77%), Query Frame = 0
Match: A0A5B7A7N1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52759.1}))
HSP 1 Score: 376.711 bits (966), Expect = 1.163e-122
Identity = 242/539 (44.90%), Postives = 306/539 (56.77%), Query Frame = 0
Query: 1 MVQKRPLVGDDSCFV-SAKHPKFEDSNTQLVSVLEF-PSKELGWKPYTSGKGYDRATNHSLESDGDLDTDTCNITDFPKECTEY---SSGGNSNSSWASSCTSEEDLRLEVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPDYQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSEVDIKFGGICVTPMPDMELITFDDYKIGYGRKGCSCVDPGTITCVRHHVFQAREDLRRLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDCLSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEYVDSEDDTESEGEEDSVIEYPACQGFTGGNWTQASSHDDGTGVVKNASNQY-STEFSDLDGISSLSEIWRHNYYG---SDPIFSPSRSTLLDVWGDHNFDYHSPSATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPCDDEVWDFEYSACHNDVEFFST-SNVMEVFGVEDSSNKARD 529
MVQKRP GD+ + S+KHP+ + + QLVSVLEF PS KP TSG+G + ++D D + IT+ P EC++ +SG SNSSWA+S TSEED R + PF+ + E + P R+L S + Y +LE PPQKLV IGPD+QA+VPEW P G K ++ CS ++ P+ S D E K GICV P P+ E T++ K+G GR C C D G++ CVR H+ + RE LRR +GQE F LG +MGEVVAEKW EEEE +F EV+ SN +S GKNFWD LS FP RT +IVSYYFNVFMLR RA+QNR MNIDSDDDEWQ +D ++ E EEDSVIE P G G Q V S+ Y + + GI+SLSE G SDP L D DH D + S G+ Q K+KA +SK + +FN S GG+D LE CD +VWD Y C + +F T S + EVFGV + KARD
Sbjct: 1 MVQKRPF-GDEELYKPSSKHPRQLEYSNQLVSVLEFVPSDNAAQKPQTSGEG--EGSFAKSKTDDDEKIASQIITELP-ECSDKDIETSGCISNSSWATSSTSEEDARSKAPFHLLLSPEYYNPGRPIRALIYSEEIYHPVLEYPPQKLVSIGPDFQADVPEWRPQGTKSTANCSDLSDPTNLSPQASESNLVDGNSDEN--KLAGICVIPSPESEPSTYNGNKVGDGRTDCCCQDAGSVRCVRQHIVETREKLRRTLGQERFEELGFSDMGEVVAEKWREEEEHLFHEVVFSNAASLGKNFWDHLSMAFPFRTKKDIVSYYFNVFMLRMRAEQNRCDPMNIDSDDDEWQGGDDSGSGDDEVGTIE-EEDSVIESPVYHGDPGHTEIQGDE-----AVAHATSDNYENVDLGSDKGITSLSETCPRKLLGNCSSDPTLEFPGKILWDEGRDH--DACTYSDAGSAPQVTKVKANNSKPWLGSFNGTSTGGGHDYVLEHCDSKVWDVNYLICPKNEDFLPTCSMIEEVFGVGAWNCKARD 525
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BL33 ((Uncharacterized protein {ECO:0000313|EMBL:MPA69415.1}))
HSP 1 Score: 367.466 bits (942), Expect = 9.342e-119
Identity = 237/548 (43.25%), Postives = 316/548 (57.66%), Query Frame = 0
Match: A0A5B7BL33 ((Uncharacterized protein {ECO:0000313|EMBL:MPA69415.1}))
HSP 1 Score: 367.466 bits (942), Expect = 9.342e-119
Identity = 237/548 (43.25%), Postives = 316/548 (57.66%), Query Frame = 0
Query: 1 MVQKRPLVGDDSCF-VSAKHPKFEDSNTQLVSVLEFPSKELGW--KPYTSGKGYDRATNHSLESDGDLDTDTCNITDFP----KECTEYSSGGNSNSSWASSCTSEEDLRLEVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPDYQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSEVDIKFGGICVTPMPDMELITFDDYKIGYGRKGCSCVDPGTITCVRHHVFQAREDLRRLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDCLSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEYVDSEDDTESEGEEDSVIEYPACQGFTGGNWTQA-SSHDDGTGVVKNASNQY-STEFSDLDGISSLSEI----WRHNYYGSDPIFSPSRSTLLDVWGDHNF--DYHSPSATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPCDDEVWDFEYSAC-HNDVEFFSTSNVM-EVFGVEDSSNKARDDK 531
MVQKRP GD+ + VS+K+P+ + + +L S LEF S E W K SG+G + +++G+ + IT+ P K+ + G SNSSWA+S TSEED+ E PF+ LE N+ D P R+ S + Y LLE P+K + IGPD+QA+VPEW P G K ++ CS +E I PE S DS +E K GICV P P+ E T++ K+G GR C C D G++ CVR H+ +ARE L+R +G+E F LG +MGEVVAEKWSEEEE +F EV+ SNP+S GK FWD LS FP RT IVSYYFNVF+L++RA+QNR MNIDSD+DEWQ S+D D E +EDSVIE P G N Q SH+ GV + Y + +F GI+++SE N P+ L DV DH+ D + S TGA + ++KA +SK + +FN ++ GG+D LE CD +VWD Y C N+V+F T N++ EVFGV + K RD K
Sbjct: 1 MVQKRPF-GDEELYEVSSKYPRQMEFSNRLASFLEFVSSE-DWADKHQISGEGGSAKS----KTEGNEKIASQIITELPVCNEKDIETSAPGCISNSSWATSSTSEEDVWSEAPFHLPFFLEYNNPDRPIRTSVYSEEMYPSLLEYSPRKPISIGPDFQADVPEWRPLGTKNTANCSDSSEPSIICPEASESDFIDSNGNEN--KLAGICVIPSPESEPSTYNGNKVGDGRTDCCCQDAGSVRCVRQHIMEAREKLKRTLGKERFEELGFSDMGEVVAEKWSEEEEHLFHEVVFSNPASLGKKFWDHLSMAFPFRTKKNIVSYYFNVFLLQRRAEQNRCDPMNIDSDNDEWQGSDDSGDDEFGTIEE--DEDSVIESPVYHDDPGHNEIQGDESHEYDEGVAHATCDHYENVDFGSEKGITNVSETCPMKLLDNRSSGPPLQHLPGKILWDVGVDHDAQDDSCTSSDTGAAPRVAQVKANNSKPWLGSFNGINGGGGHDYALEHCDSKVWDVGYLTCPKNEVDFLPTCNMIEEVFGVGAWNCKTRDGK 538
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BIE4 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542529.1}))
HSP 1 Score: 370.548 bits (950), Expect = 8.343e-117
Identity = 242/552 (43.84%), Postives = 317/552 (57.43%), Query Frame = 0
Match: A0A5J5BIE4 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542529.1}))
HSP 1 Score: 370.548 bits (950), Expect = 8.343e-117
Identity = 242/552 (43.84%), Postives = 317/552 (57.43%), Query Frame = 0
Query: 1 MVQKRPLVGDDSCF-VSAKHPKFEDSNTQLVSVLEF-PSKELGWKPYTSGKGYDRATNHSLESDGDLDTDTCNITDFP----KECTEYSSGGNSNSSWASSCTSEEDLRLEVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPDYQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSEVD-IKFGGICVTPMPDMELITFDDYKIGYGRKGCSCVDPGTITCVRHHVFQAREDLRRLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDCLSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEYVDSEDD--TESEGEEDSVIEYPACQGFTGGNWTQA-SSH----DDGTGVVKNASNQYSTEFSDLDGISSLSEIWRHNYYG---SDPIFSPSRSTLLDVWGDHNF--DYHSPSATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPCDDEVWDFEYSAC-HNDVEFFST-SNVMEVFGVEDSSNKARDDK 531
MVQKRP GD+ + +S+KHP+ + + QLVS LEF PS++ K SG+G + ++DGD + IT+ P K+ + G SN+S A+S EED + PF+ LE N+ D P R+ S + Y LLE P +KLV IGPD+QA+VPEW P G K ++ CS+ +E +I S+ SD D+ D K GICV P P++E ++D K+GYGR C C D G++ CV H+ +ARE L+R +GQE F LG +MGEVVAEKWS EEE +F EV+ SNP+S GKNFW LS FP RT +IVSYYFNVF+LR+RA+QNR S+NIDSD+DEWQ S+ DS DD E +EDSVIE P G N Q SH D G G N N +F GI+++SE G SDP L V GDH+ D + S GA Q ++KA +SK + +FN + G +D LE CD + WD Y C N+V+F T S + EVFGV + KARD K
Sbjct: 276 MVQKRPF-GDEELYEISSKHPRQLEYSNQLVSFLEFVPSEDAAHKHQNSGEG--EGSLAKSKTDGDEKIASQIITELPVCNEKDIETSAPGCISNASRATSSAGEEDAWSDRPFHLPFSLEYNNHDRPIRTFVYSEELYPSLLEYPTRKLVSIGPDFQADVPEWRPLGTKNTANCSHSSEPLIL---CSQALESDLTDNSGDENKLAGICVIPSPELEASAYNDSKVGYGRTDCCCQDAGSVRCVGEHIMEAREKLKRTLGQERFQELGFSDMGEVVAEKWSVEEEHLFHEVVCSNPASLGKNFWYHLSMAFPYRTKKDIVSYYFNVFVLRRRAEQNRCDSINIDSDNDEWQGSD----DSGDDEFRTIEEDEDSVIESPVYHDDPGHNEIQGDESHEYDEDVGHGTCDNYEN---VDFGSDKGIANMSETCPKKLLGNCSSDPPLQLPNRILWGVGGDHDAQDDSCTSSDVGAAQQLGQVKANNSKPWLGSFNGMGGGGSHDYILEHCDSKGWDVGYLTCPKNEVDFLPTCSMIEEVFGVGAWNCKARDGK 814
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2ZC68 (Myb-like domain-containing protein {ECO:0000259|SMART:SM00717})
HSP 1 Score: 343.584 bits (880), Expect = 1.404e-109
Identity = 219/551 (39.75%), Postives = 309/551 (56.08%), Query Frame = 0
Match: A0A2G2ZC68 (Myb-like domain-containing protein {ECO:0000259|SMART:SM00717})
HSP 1 Score: 343.584 bits (880), Expect = 1.404e-109
Identity = 219/551 (39.75%), Postives = 309/551 (56.08%), Query Frame = 0
Query: 1 MVQKRPLVGDDSCFVSAKHPKFEDSNTQLVSVLEFPSKELGWKPYTSGKGYDRATNHSLESDGDLDTDTCNITDFP----KECTEYSSGGNSNSSWASSCTSEEDLRLEVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPDYQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSE-VDIKFGGICVTPMPDMELITFDDYKIGYGRKGCSCVDPGTITCVRHHVFQAREDLRRLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDCLSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEYVDSEDDTESEGEEDSVIEYPACQGFTGGNWTQASSHDDGTGVVKNASNQYSTEFSDLDGISSLSE------IWRHNYYGSD--PIFSPSRSTLLDVWGDHNFDYHSPS----ATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPCDDEVWDFEYSACHND-VEFFST-SNVMEVFGVEDSSNKARDDKL 532
MVQKRP + VS+K P+ + ++QLVS LEFP + + YTSG D E+ D D+C++ + P K G SNSSWA+S TSEED+R E PF+ E ++D P + + Y+ LL PP+KLVPIG D+QAE+PEW + +K S+ E + +S+ + SD D + K G C+ PMP ++L D +G G+ CSC D G+ CVR H+ +A+E L+ +GQE F LG ++MGEVV KWS EEE++F EV+ SNP++ GKNFW+ L+ FPSR+ ++VSYYFNVFMLRKRAKQNR +NIDSD+DEWQE +D+ V + E +EDSV+E P Q G N Q +HD+ GV + +T FS +S++SE I +N G + PI++ + + G H D H S A GA + +K+ + K +A++F V G+D +EP + + WD Y +C D V+ T S + EVFG S+K RD L
Sbjct: 1 MVQKRPYGEEKLYEVSSKQPRHVEPSSQLVSFLEFPCESVAPNSYTSGG--DGENFSKFEASTDNRPDSCDVAEVPVSSEKAVETNIHGSASNSSWATSSTSEEDIRSEAPFHVLTASEFYNIDPPFSVVIHPMEGYSPLLSNPPRKLVPIGSDFQAELPEWGAYDSKNISLRESTQENLNL---SSQEQESDFVDHRGEENKLAGTCIIPMPKLDLPADHDENVGAGKIECSCEDAGSFGCVRLHIMEAKEKLKEALGQETFLSLGFYDMGEVVTGKWSGEEEELFHEVVFSNPAAVGKNFWNHLAVEFPSRSRRDLVSYYFNVFMLRKRAKQNRFDPLNIDSDNDEWQEIDDDVVATGAKMTDE-DEDSVVESPIYQNSPGHNEKQ--THDEEAGVA-TLEDYEATNFSRRKDLSNMSEPCPDKLIDNNNSCGHNIQPIYTHHSNEV----GGH--DVHDSSCTTHAAGAASEPPHVKSDNFKHWASHFTGVGIGSGHDFVMEPSNGKEWDIGYLSCAKDEVDLLPTCSMIEEVFGDGAWSSKNRDHSL 536
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8FJI9 ((uncharacterized protein LOC107855426 {ECO:0000313|RefSeq:XP_016555925.1}))
HSP 1 Score: 341.273 bits (874), Expect = 1.004e-108
Identity = 218/551 (39.56%), Postives = 309/551 (56.08%), Query Frame = 0
Match: A0A1U8FJI9 ((uncharacterized protein LOC107855426 {ECO:0000313|RefSeq:XP_016555925.1}))
HSP 1 Score: 341.273 bits (874), Expect = 1.004e-108
Identity = 218/551 (39.56%), Postives = 309/551 (56.08%), Query Frame = 0
Query: 1 MVQKRPLVGDDSCFVSAKHPKFEDSNTQLVSVLEFPSKELGWKPYTSGKGYDRATNHSLESDGDLDTDTCNITDFP----KECTEYSSGGNSNSSWASSCTSEEDLRLEVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPDYQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSE-VDIKFGGICVTPMPDMELITFDDYKIGYGRKGCSCVDPGTITCVRHHVFQAREDLRRLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDCLSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEYVDSEDDTESEGEEDSVIEYPACQGFTGGNWTQASSHDDGTGVVKNASNQYSTEFSDLDGISSLSE------IWRHNYYGSD--PIFSPSRSTLLDVWGDHNFDYHSPS----ATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPCDDEVWDFEYSACHND-VEFFST-SNVMEVFGVEDSSNKARDDKL 532
MVQKRP + VS+K P+ + ++QLVS LEFP + + YTSG D E+ D D+C++ + P K G SNSSWA+S TSEED+R E PF+ E ++D P + + Y+ LL PP+KLVPIG D+QAE+PEW + +K S+ E + +S+ + SD D + K G C+ PMP ++L D +G G+ CSC D G+ CVR H+ +A+E L+ +GQE F LG ++MGEVV KWS EEE++F EV+ SNP++ GKNFW+ L+ FPSR+ ++VSYYFNVFMLRKRAKQNR +NIDSD+DEWQE +D+ V + E +EDSV+E P Q G N Q +HD+ GV + +T FS + ++SE I +N G + PI++ + + G H D H S A GA + +K+ + K +A++F+ V G+D +EP + + WD Y +C D V+ T S + EVFG S+K RD L
Sbjct: 1 MVQKRPYGEEKLYEVSSKQPRHVEPSSQLVSFLEFPCESVAPNSYTSGG--DGENFSKFEASTDNRPDSCDVAEVPVSSEKAVETNIHGSASNSSWATSSTSEEDIRSEAPFHVLTASEFYNIDPPFSVVIHPMEGYSPLLSNPPRKLVPIGSDFQAELPEWGAYDSKNISLRESTQENLNL---SSQEQESDFVDHRGEENKLAGTCIIPMPKLDLPADHDENVGAGKIECSCEDAGSFGCVRLHIMEAKEKLKEALGQETFLSLGFYDMGEVVTGKWSGEEEELFHEVVFSNPAAVGKNFWNHLAVEFPSRSRRDLVSYYFNVFMLRKRAKQNRFDPLNIDSDNDEWQEIDDDVVATGAKMTDE-DEDSVVESPIYQNSPGHNEKQ--THDEEAGVA-TLEDYEATNFSRRKDLINMSEPCPDKLIDNNNSCGHNIQPIYTHHSNEV----GGH--DVHDSSCTTHAAGAASEPPHVKSDNFKHWASHFSGVGIGSGHDFVMEPSNGKEWDIGYLSCAKDEVDLLPTCSMIEEVFGDGAWSSKNRDHSL 536
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6JTR3 ((At-rich interactive domain-containing protein 2 {ECO:0000313|EMBL:OIT19876.1}))
HSP 1 Score: 334.724 bits (857), Expect = 2.363e-106
Identity = 212/539 (39.33%), Postives = 297/539 (55.10%), Query Frame = 0
Match: A0A1J6JTR3 ((At-rich interactive domain-containing protein 2 {ECO:0000313|EMBL:OIT19876.1}))
HSP 1 Score: 334.724 bits (857), Expect = 2.363e-106
Identity = 212/539 (39.33%), Postives = 297/539 (55.10%), Query Frame = 0
Query: 1 MVQKRPLVGDDSCFVSAKHPKFEDSNTQLVSVLEF-PSKELGWKPYTSGKGYDRATNHSLESDGDLDTDTCNITDFPKECTEYS-SGGNSNSSWASSCTSEEDLRLEVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPDYQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSEVDIKFGGICVTPMPDMELITFDDYKIGYGRKGCSCVDPGTITCVRHHVFQAREDLRRLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDCLSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEYVDSEDDTESEGEEDSVIEYPACQGFTGGNWTQA---SSHDDGTGVVKNASNQYSTEFSDLDGISSLSEIWRHNYYGSDPIFSPSRSTLLDVWGDHNFDY---HSPSATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPCDDEVWDFEYSAC-HNDVEFFSTSNVM-EVFGVEDSSNKARD 529
MVQKRP G++ C VS+K P+ + N+QLVSVL+F P + + KPY SG D +T I+ FP + T+ S G SNSSW S TSEED+R EVPF + L + + PSR++ R+ Y LL PQKLVPIGPD+QAE+PEW G+K+ + E + + D F E KF G C+ PM + EL + G GR CSC D G++ CVR H+ +ARE L+ +G+E F LG MGEVV EKW EEEE +F EV+ SNP+S G++FW+ L++ FPSR+ E+VSYYFNVF+LRKRAKQNR N+DSD+DEWQE +D D +D ++G+EDSV+E P Q G N ++D+ GV + F + LS + ++ F+PS L + +Y H+ A G +A + + + +A++F + G+D L PC + WD Y +C ++V+ T ++ EVFG S K+RD
Sbjct: 1 MVQKRPF-GEELCEVSSKQPRHVEPNSQLVSVLDFCPHEAVAMKPYASGGDEDNTKKPD-------SGNTPEISTFPDQDTDTSIDGSASNSSWPISSTSEEDIRFEVPFDS---LRSPEYYLPSRTITHPREVYFSLLRNSPQKLVPIGPDFQAELPEWGGHGSKDKPIVQDSHENMNLPSQALESDRVDDFSDEN--KFAGTCIVPMRNTELTADHEEIAGVGRAECSCEDAGSMRCVRLHIIEAREKLKISLGEETFVRLGFCGMGEVVTEKWCEEEEDLFHEVVFSNPASLGRDFWNNLASAFPSRSRRELVSYYFNVFILRKRAKQNRFDPSNVDSDNDEWQEIDDTADD--EDKMTDGDEDSVVESPEYQNDFGCNEIYGDDKQAYDENVGVATWEVYK-PVGFGSRKVFTDLSAECPDKLFDTNSSFTPSIQHLDRGVSNEASNYYGSHTRDAPGGAPEAPLGRTVNGRHWASDFASIGRDNGHDFVLGPCSAKEWDIGYLSCAKSEVDLLPTHTMIEEVFGDGAWSYKSRD 523
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4C7K4 ((uncharacterized protein LOC107815990 {ECO:0000313|RefSeq:XP_016497127.1, ECO:0000313|RefSeq:XP_016497128.1}))
HSP 1 Score: 325.479 bits (833), Expect = 1.063e-102
Identity = 214/543 (39.41%), Postives = 294/543 (54.14%), Query Frame = 0
Match: A0A1S4C7K4 ((uncharacterized protein LOC107815990 {ECO:0000313|RefSeq:XP_016497127.1, ECO:0000313|RefSeq:XP_016497128.1}))
HSP 1 Score: 325.479 bits (833), Expect = 1.063e-102
Identity = 214/543 (39.41%), Postives = 294/543 (54.14%), Query Frame = 0
Query: 1 MVQKRPLVGDDSCFVSAKHPKFEDSNTQLVSVLEF-PSKELGWKPYTSGKGYDRATNHSLESDGDLDTDTCNITDFPKECTEYS-SGGNSNSSWASSCTSEEDLRLEVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPDYQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSEVDIKFGGICVTPMPDMELITFDDYKIGYGRKGCSCVDPGTITCVRHHVFQAREDLRRLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDCLSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEYVDSEDDTESEGEEDSVIEYPACQGFTGGNWT---QASSHDDGTGV----VKNASNQYSTEFSDLDGISSLSEIWRHNYYGSDPIFSPSRSTL---LDVWGDHNFDYHSPSATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPCDDEVWDFEYSAC-HNDVEFFSTSNVM-EVFGVEDSSNKARD 529
MVQKRP G+D VS+K P+ + N+QLVSVL+F P + + KPY SG D A + I+ FP + TE S G SNSSW S SEE++R EVPF T L + + PSR++ R++Y LL PQKLVPIGPD+QAE+PEW G+K+ + E + + D F E K G C+ PM +MEL + G GR CSC D G++ CVR H+ +ARE L+ +G+E F LG+ +MGEVV EKW EEEE +F E + SNP+S G++FW+ L+ FPSR+ E+VSYYFNVF+LRKRAKQNR N+DSD+DEWQE +D D ED E +EDSV+E P Q G N ++D GV V S F+D+ S + ++ F+ S L + H H+ A G +A + + + +A++F +S G+D L PC + WD Y +C ++V+ T ++ EVFG S K+RD
Sbjct: 1 MVQKRPF-GEDLYEVSSKQPRHVEPNSQLVSVLDFSPHESVAMKPYASGGDEDSAKKPD-------SGNAAEISIFPDQDTETSIDGSASNSSWPISSISEEEIRFEVPFDT---LSSPEYYLPSRTITHPREAYFSLLRNSPQKLVPIGPDFQAELPEWGGHGSKDKPIMQDSHENMNLPSQALESDRVDHFSDEN--KLAGTCIVPMRNMELPAVQEEIAGVGRAECSCEDAGSMRCVRLHIMEAREKLKISLGEETFVRLGVCDMGEVVTEKWCEEEEDLFHEAVFSNPASLGRDFWNNLAIEFPSRSRRELVSYYFNVFILRKRAKQNRFDPSNVDSDNDEWQEIDDT-ADDEDKMTDE-DEDSVVESPEYQNDFGRNVIYEDDKQAYDGNVGVTTWEVYKPVGFGSKVFTDI------SAECPDKLFDTNSGFTSSIQHLGRGVSNEAGHYDGSHTRDAPGVAPEATLGRTVNGRHWASDFASISHDSGHDFVLGPCSTKEWDIGYLSCAKSEVDLLPTHTMIEEVFGDGAWSYKSRD 522
BLAST of DCAR_026012 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7XTC9 ((uncharacterized protein LOC104237312 {ECO:0000313|RefSeq:XP_009789735.1}))
HSP 1 Score: 323.168 bits (827), Expect = 9.181e-102
Identity = 214/548 (39.05%), Postives = 301/548 (54.93%), Query Frame = 0
Match: A0A1U7XTC9 ((uncharacterized protein LOC104237312 {ECO:0000313|RefSeq:XP_009789735.1}))
HSP 1 Score: 323.168 bits (827), Expect = 9.181e-102
Identity = 214/548 (39.05%), Postives = 301/548 (54.93%), Query Frame = 0
Query: 1 MVQKRPLVGDDSCFVSAKHPKFEDSNTQLVSVLEF-PSKELGWKPYTSGKGYDRATNHSLESDGDLDTDTCN---ITDFPKECTEYS-SGGNSNSSWASSCTSEEDLRLEVPFYTSVPLENNDLDYPSRSLARSRDSYACLLELPPQKLVPIGPDYQAEVPEWCPFGAKESSVCSYPAETIIAGPETSRMKPSDSFDSEVDIKFGGICVTPMPDMELITFDDYKI-GYGRKGCSCVDPGTITCVRHHVFQAREDLRRLVGQECFTGLGLHEMGEVVAEKWSEEEEQIFEEVIISNPSSAGKNFWDCLSAVFPSRTTMEIVSYYFNVFMLRKRAKQNRSKSMNIDSDDDEWQESEDEYVDSEDDTESEGEEDSVIEYPACQGFTGGNWTQA---SSHDDGTGVV-----KNASNQYSTEFSDLDGISSLSEIWRHNYYGSDPIFSPSRSTL---LDVWGDHNFDYHSPSATGAELQANKIKAGHSKSFAANFNQVSAKGGNDLFLEPCDDEVWDFEYSAC-HNDVEFFSTSNVM-EVFGVEDSSNKARD 529
MVQKRP G++ C VS+K P+ + N+QLVSVL+F P + + KPY SG + D D+ N I+ FP + T+ S G SNSSW S TSEE++R EVP + L + + PSR++ R+ Y LL PQKLVPIGPD+QAE+PEW G+K+ + E + + D F E KF G C+ PM + E T D +I G GR CSC D G++ CVR H+ +ARE L+ +G+E F LG MGEVV EKW EEEE +F EV+ SNP+S G++FW+ L++ FPSR+ E+VSYYFNVF+LRKRAKQNR N+DSD+DEWQE +D D +D ++G+EDSV+E P C+ G N ++D+ GV K F+D LS + ++ F+PS L + H + H+ A G +A + + + +A++F + G+D PC + WD Y +C ++V+ T ++ EVFG S K+RD
Sbjct: 1 MVQKRPF-GEELCEVSSKQPRHVEPNSQLVSVLDFSPHEAVAMKPYASGG----------DGDNTKKPDSGNAPEISTFPDQDTDTSIDGSASNSSWPISSTSEEEIRFEVPCDS---LRSPEYYLPSRTITHPREVYFSLLRNSPQKLVPIGPDFQAELPEWGGHGSKDKPIMQDSHENMNLPSQALESDCVDDFSDEN--KFAGTCIVPMRNTE--TADHEEIAGVGRAECSCEDAGSMRCVRLHIIEAREKLKISLGEETFVRLGFCGMGEVVTEKWCEEEEDLFHEVVFSNPASLGRDFWNNLASEFPSRSRRELVSYYFNVFILRKRAKQNRFDPSNVDSDNDEWQEIDDTADD--EDKMTDGDEDSVVESPECRNDFGCNEIYGDDKQAYDENVGVATWEVYKPVGCGSRKVFTD------LSAECPDKLFDTNSSFTPSIQHLDRGVSNEAGHYYGSHTRDAPGGAPEAPLGRTVNGRHWASDFASIGRDSGHDFVFGPCSAKEWDIGYLSCAKSEVDLLPTHTMIEEVFGDGAWSYKSRD 522
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5BAB4 | E-Value: 0.000e+0, PID: 67.90 | Myb-like domain-containing protein {ECO:0000259|PR... [more] |
| A0A5B7AA07 | E-Value: 1.992e-123, PID: 44.14 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5275... [more] |
| A0A5B7A7N1 | E-Value: 1.163e-122, PID: 44.90 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5275... [more] |
| A0A5B7BL33 | E-Value: 9.342e-119, PID: 43.25 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6941... [more] |
| A0A5J5BIE4 | E-Value: 8.343e-117, PID: 43.84 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8542... [more] |
| A0A2G2ZC68 | E-Value: 1.404e-109, PID: 39.75 | Myb-like domain-containing protein {ECO:0000259|SM... [more] |
| A0A1U8FJI9 | E-Value: 1.004e-108, PID: 39.56 | (uncharacterized protein LOC107855426 {ECO:0000313... [more] |
| A0A1J6JTR3 | E-Value: 2.363e-106, PID: 39.33 | (At-rich interactive domain-containing protein 2 {... [more] |
| A0A1S4C7K4 | E-Value: 1.063e-102, PID: 39.41 | (uncharacterized protein LOC107815990 {ECO:0000313... [more] |
| A0A1U7XTC9 | E-Value: 9.181e-102, PID: 39.05 | (uncharacterized protein LOC104237312 {ECO:0000313... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |