Resource Type:
Polypeptide
Name:
DCAR_025660
Identifier:
DCAR_025660.mRNA-protein
Sequence:
MELAQAPLTIQLFAAKFGYCANSSMSEDYRQHQGSGAGIFGFSNGLDRSQ
LMEQQIRRDKHRIQGLEAPPMLVTMEQDSTGNNFESAGMLSEMFNYSSGP
ASATELLEHQMMAANYHQSHRNIVARPPTQDWYGSIRQDGIANDRDSSSS
AIAAASHHHQGQGREMSTNNMNASSEAAMQLFLMNPSSARSHSPSHSMAN
STLHMLLPNSASSVHQQVFQGPPAHFGPSSQQFGSHVVSNDISHLGGHVV
DHGHGQGQGHGQGLSLSLSSSLQHLEAAKAEEFRMGDGSGMIYFNQVGSG
GGSNASNVQYPYKNNMNSLGVGHNQGMHLQGEVVMGQNQFGFGSNSALGV
VNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGT
AANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEACFYQSPFSISLF
FFHLIN*
Sequence Length:
457
Sequence Checksum:
100a85e2ce9b2de33159f9385d7ac3fd
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_025660, derives from mRNA, DCAR_025660. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5APS9 (Homeobox domain-containing protein {ECO:0000259|PROSITE:PS50071})
HSP 1 Score: 288.115 bits (736), Expect = 1.198e-86
Identity = 224/447 (50.11%), Postives = 270/447 (60.40%), Query Frame = 0
Match: A0A5J5APS9 (Homeobox domain-containing protein {ECO:0000259|PROSITE:PS50071})
HSP 1 Score: 288.115 bits (736), Expect = 1.198e-86
Identity = 224/447 (50.11%), Postives = 270/447 (60.40%), Query Frame = 0
Query: 24 SMSEDYRQHQGSGAGIFGFSNGLDRSQLMEQQ-----IRRDKHRIQGLEAPPMLVTMEQDSTG--NNFESAGMLSEMFNYSSGPASATELLEHQMMAANYHQSHRNIVARPPTQDWYGSIRQD---------------GIANDRDSSSSAIAAASHHHQGQGREMSTNNMNASSEAAMQLFLMNPSSARSHSPSHSMANS---TLHMLLPNSASSVHQQVFQGPPAHFGPSSQQFGSHVVS--NDISHLGGHVVDHGHG----QGQGHGQGLSLSLSSSLQHLEAAKAEEFRMGDGSGMIYFNQVGSGGGSNASNVQYPYKNNMNSLGVGHNQGMHLQGEVVMGQN-QFGFGSNSALGVVNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGTAANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEA 438
SMS+D+ Q G+F FSNG +RSQ +QQ IRRDK R QG E PP LV +E++ TG FE+ GMLSEMFN+ SG +ATELLE+Q+ +ANY VA + +WYG+ RQ+ + N+RD+ A H+ +++NA S AAMQLFLMNP TLHMLLPN +S+ Q F P PS FG + D SH G H +G GQGLSLSLSSSLQHLEAAKAEE RMGD SGM++FNQ GGGS ++ QYPYKN LG GH+Q +HLQG MGQN Q G S+LGVVN+LR SKY+KAAQELLEEFCSVGRGQFK NK G+ N+I PNS+ + A ++SSSKD PPLSA+DRI+HQRRKVKLLSMLDE
Sbjct: 31 SMSQDFHQ------GLFSFSNGFERSQQEQQQHIAQQIRRDKLRAQGFEPPPPLVAIEEEETGGLQGFETTGMLSEMFNFQSG-TTATELLENQI-SANYRNPRSVSVASGVSNEWYGN-RQEMMVGGLGPLGDSKNQNVVNNRDTIGMAHHHHHHNQ--------ISSINADSAAAMQLFLMNPQPRSPSPSPSHPPAPSSSTLHMLLPNPSSTSTMQGFHNPVGTASPSGGTFGPSQFTWVPDSSHEGSTTGAQLHNPSEIRGVVEGQGLSLSLSSSLQHLEAAKAEELRMGD-SGMLFFNQ---GGGSTSA--QYPYKN----LG-GHHQPLHLQGG--MGQNHQVHVGFGSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNK-FGKHNTI-PNSNPSGSGGA--GSSSSSKDLPPLSAADRIEHQRRKVKLLSMLDEV 443
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AD28 ((Putative BEL1-like homeodomain protein 2 {ECO:0000313|EMBL:MPA54602.1}))
HSP 1 Score: 283.493 bits (724), Expect = 6.165e-85
Identity = 225/453 (49.67%), Postives = 274/453 (60.49%), Query Frame = 0
Match: A0A5B7AD28 ((Putative BEL1-like homeodomain protein 2 {ECO:0000313|EMBL:MPA54602.1}))
HSP 1 Score: 283.493 bits (724), Expect = 6.165e-85
Identity = 225/453 (49.67%), Postives = 274/453 (60.49%), Query Frame = 0
Query: 23 SSMSEDYRQHQGSGAGIFGFSNGLDRSQLMEQQ-----IRRDKHRIQGLEA---PPMLVTMEQDSTG-NNFESAGMLSEMFNYSSGPASATELLEHQMMAANYHQSHRNIVARPP-----TQDWYGSI-----------------RQDGIANDRDSSSSAIAAASHHHQGQGREMSTNNMNASSEAAMQLFLMNPSSARSHSPSHSMANSTLHMLLPNSASSVHQQVFQG---PPA--HFGPSSQQFGSHVVSNDISHLGGHVVDHGHGQGQGHGQGLSLSLSSSLQHLEAAKAEEFRMGDGSGMIYFNQVGSGGGSNASNVQYPYKNNMNSLGVGHNQGMHLQGEVVMG-QNQFGFGSNSALGVVNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGTAANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEA 438
+SMS+DY Q GIF FSNG +RSQ +QQ IRR+K R+QG + PP LV +E++S G FE+ GMLSEMFN+ SG A+ATELLE+QM Q++RN RPP + +WYG+ + + N+RDSS +HHH +MS N ++++ AAMQLFLMNP +STLHMLLPN +S+ Q F P A FGPS QF S GH + G GQGLSLSLSSSLQHLEAAKAEE RMGD SGM++FNQ G GG ++A QY YKN +G +Q +HLQG V Q GFG S+LGVVN+LR SKY+KAAQELLEEFCSVGRGQFK NK G+ N+ NPNS+ T ++SSSKD PPLSA+DRI+HQRRKVKLLSMLDE
Sbjct: 32 NSMSQDYHQ------GIFSFSNGFERSQQEQQQHIAQQIRREKLRVQGFDPQPPPPQLVAIEEESGGIPVFETTGMLSEMFNFPSGAATATELLENQM-----SQNYRN--PRPPAASGMSNEWYGNRQGMVVGGGLGPLGAGDSKNQNVVNNRDSS------IAHHHN----QMSGINADSAAAAAMQLFLMNPQPRSPSPSPSPATSSTLHMLLPNPSSTSTLQGFHNNNNPVAGGAFGPS--QFTWVADS-------GHEGSTNNPGGVVEGQGLSLSLSSSLQHLEAAKAEELRMGDTSGMLFFNQGGGGGSTSAH--QYQYKN------LGGHQPLHLQGGVAQNHQVHLGFG--SSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNK-FGKLNT-NPNSNPTGSGGG--GSSSSSKDLPPLSAADRIEHQRRKVKLLSMLDEV 438
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6GX07 (Homeobox domain-containing protein {ECO:0000259|PROSITE:PS50071})
HSP 1 Score: 280.796 bits (717), Expect = 1.817e-83
Identity = 227/464 (48.92%), Postives = 271/464 (58.41%), Query Frame = 0
Match: F6GX07 (Homeobox domain-containing protein {ECO:0000259|PROSITE:PS50071})
HSP 1 Score: 280.796 bits (717), Expect = 1.817e-83
Identity = 227/464 (48.92%), Postives = 271/464 (58.41%), Query Frame = 0
Query: 24 SMSEDYRQHQGSGAGIFGFSNGLDRSQLMEQQI-----------RRDKHRIQGLEAPPMLVTMEQDSTGN--NFESAGMLSEMFNYSSGPASATELLEHQMMAANYHQSHRNIVARPPT-------QDWYGSIRQDGI-------------ANDRDSSSSAIAAASHHHQGQGREMSTNNMNASSEAAMQLFLMNPSSARSHSPSHSM-------ANSTLHMLLPNSASSVHQQVFQGPPAHFGPSSQQFGSHVVSNDISHLGGHVVDHGHGQGQG--------HGQGLSLSLSSSLQHLEAAKAEEFRMGDGSGMIYFNQVGSGGGSNASNVQYPYKNNMNSLGVGHNQGMHLQGEVVMGQN-QFGFGSNSALGVVNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGTAANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEA 438
SMS+D+ Q GIF FSNG +RS + Q+ RRDK R+QG E PP LV +E++ +G +E+AGMLSEMFN+ G +A ELLEHQ+ +NY RN RP T +WYGS RQ + N+RDS A HHHQ +++NA S AAMQLFLMNP P +STLHMLLPN ++S+ QG P FG+ V+ V D GH G GQGLSLSLSSSLQHLEAAKAEE RMGD SGM+++ G GGGS S+ QYPYK SLG GH Q +HLQG V G N Q G S+LG VN++R SKY+KAAQELLEEFCSVGRGQFK NK GR N+ NPNS+ G+A G ++SSSKD PPLSA+DRI+HQRRKVKLLSMLDEA
Sbjct: 61 SMSQDFHQ------GIFSFSNGFERSAVTHQEQQQQQQHITQQIRRDKLRVQGFEPPPPLVAIEEEESGGLPVYETAGMLSEMFNFGPGATTAAELLEHQL-PSNY----RN--PRPATAVTGVSNSEWYGS-RQGMVGGLGPLGDSKNQNVNNRDS------LAQHHHQ-------ISSINADSAAAMQLFLMNPQPRSPSPPPQPHPHPHPPATSSTLHMLLPNQSTSL-----QGFATASAPGGGAFGASVIPPSQFTW---VPDSGHESGNNPSEIGGIVEGQGLSLSLSSSLQHLEAAKAEELRMGD-SGMLFY---GQGGGS--SSAQYPYK----SLG-GHQQPLHLQGGV--GHNHQVHVGFGSSLGAVNVMRNSKYVKAAQELLEEFCSVGRGQFKKNK-FGRHNT-NPNSNPGGGSAGGGGSSSSSKDLPPLSAADRIEHQRRKVKLLSMLDEA 474
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AHM6 ((Putative BEL1-like homeodomain protein 2 {ECO:0000313|EMBL:MPA54603.1}))
HSP 1 Score: 276.174 bits (705), Expect = 3.623e-82
Identity = 223/453 (49.23%), Postives = 273/453 (60.26%), Query Frame = 0
Match: A0A5B7AHM6 ((Putative BEL1-like homeodomain protein 2 {ECO:0000313|EMBL:MPA54603.1}))
HSP 1 Score: 276.174 bits (705), Expect = 3.623e-82
Identity = 223/453 (49.23%), Postives = 273/453 (60.26%), Query Frame = 0
Query: 23 SSMSEDYRQHQGSGAGIFGFSNGLDRSQLMEQQ-----IRRDKHRIQGLEA---PPMLVTMEQDSTG-NNFESAGMLSEMFNYSSGPASATELLEHQMMAANYHQSHRNIVARPP-----TQDWYGSI-----------------RQDGIANDRDSSSSAIAAASHHHQGQGREMSTNNMNASSEAAMQLFLMNPSSARSHSPSHSMANSTLHMLLPNSASSVHQQVFQG---PPA--HFGPSSQQFGSHVVSNDISHLGGHVVDHGHGQGQGHGQGLSLSLSSSLQHLEAAKAEEFRMGDGSGMIYFNQVGSGGGSNASNVQYPYKNNMNSLGVGHNQGMHLQGEVVMG-QNQFGFGSNSALGVVNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGTAANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEA 438
+SMS+DY Q GIF FSNG +RSQ +QQ IRR+K R+QG + PP LV +E++S G FE+ GMLSEMFN+ SG A+ATELLE+QM Q++RN RPP + +WYG+ + + N+RDSS +HHH +MS N ++++ AAMQLFLMNP +STLHMLLPN +S+ Q F P A FGPS QF S GH + G GQGLSLSLSSSLQHLEAAKAEE RMGD SGM++FNQ G GG ++A QY YKN +G +Q +HLQG V Q GFG S+LGVVN+LR SKY+KAAQELLEEFCSVGRGQFK NK G+ +N N +S + G ++SSSKD PPLSA+DRI+HQRRKVKLLSMLDE
Sbjct: 32 NSMSQDYHQ------GIFSFSNGFERSQQEQQQHIAQQIRREKLRVQGFDPQPPPPQLVAIEEESGGIPVFETTGMLSEMFNFPSGAATATELLENQM-----SQNYRN--PRPPAASGMSNEWYGNRQGMVVGGGLGPLGAGDSKNQNVVNNRDSS------IAHHHN----QMSGINADSAAAAAMQLFLMNPQPRSPSPSPSPATSSTLHMLLPNPSSTSTLQGFHNNNNPVAGGAFGPS--QFTWVADS-------GHEGSTNNPGGVVEGQGLSLSLSSSLQHLEAAKAEELRMGDTSGMLFFNQGGGGGSTSAH--QYQYKN------LGGHQPLHLQGGVAQNHQVHLGFG--SSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNK-FGK---LNTNPNSNPNGSGGGGSSSSSKDLPPLSAADRIEHQRRKVKLLSMLDEV 438
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J8PMG9 (POX domain-containing protein {ECO:0000259|SMART:SM00574})
HSP 1 Score: 265.388 bits (677), Expect = 5.255e-81
Identity = 228/474 (48.10%), Postives = 277/474 (58.44%), Query Frame = 0
Match: A0A7J8PMG9 (POX domain-containing protein {ECO:0000259|SMART:SM00574})
HSP 1 Score: 265.388 bits (677), Expect = 5.255e-81
Identity = 228/474 (48.10%), Postives = 277/474 (58.44%), Query Frame = 0
Query: 21 ANSSMSEDYRQHQGSGAGIFGFSNGLDRSQL------------MEQQIRRDKHRIQGLEAPPM-LVTMEQDSTGN--NFESAGMLSEMFNYSSGPAS-------ATELLEHQMMAANYHQSHRNIVARPP--TQDWYGSIRQDGIAN--DRDSSSSAIAAASHHHQGQGREMSTNNMNASSEAAMQLFLMNPSSARSHSPSHSMANS--TLHMLLPNSASSVHQQVFQGPPAHFG-------------PSSQQFGSHVVSNDISHLG--GHVVDHGHGQGQGHGQGLSLSLSSSLQHLEAAKAEEFRMGDGSGMIYFNQVGSGGGSNASNVQYPYKNNMNSLGVGHNQGMHLQGEVVMGQNQ----FGFGSNSALGVVNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGTAANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEAC--FYQSPF 445
+ +SMS+DY Q AGIF FSNG +RS + +EQQIRRDK R+QG E PP LV +E++ + + +E+AGMLSEMFN+ SG A+ +TELL+ Q + NY ++HR PP T +WY S RQ + S S I S Q Q ++NA S AAM LFLMNP P A S TLHMLLPN ++S+ GP FG P S G + + +S L G VV+ GQGLSLSLSSSLQHLEAAKAEE RMGDG G++Y+NQ GGGS QY +LG H+Q MHLQG V GQNQ GFGS +LG+VN+LR SKY+KAAQELLEEFCSVGRGQFK NK GR N+ + +SG A G ++SS+KD PPLSA+DRI+HQRRKVKLLSMLDEAC F SP
Sbjct: 36 STNSMSQDYHQ----AAGIFSFSNGFERSAVSHQEHQQQQQQHLEQQIRRDKLRVQGFEPPPPPLVGIEEEESTSLPVYETAGMLSEMFNFPSGAAAAAAAATASTELLD-QHVRPNY-RAHR-----PPGNTNEWY-SNRQGAVGGLGQLGESKSHITRDSLAQQQQ----QLPSINADSAAAMNLFLMNPQQRSPSPPPPPPATSSNTLHMLLPNPSTSLQGFNVSGPGGGFGTSTVLSPPQFTWVPGSAHEGGNNTDSQLSSLNEIGSVVE---------GQGLSLSLSSSLQHLEAAKAEELRMGDG-GLLYYNQ---GGGSAPQFHQY------RNLGSHHHQTMHLQGGV--GQNQQVHHVGFGS--SLGMVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNK-FGRNNTNPSSDPGSSGGAGGGGSSSSTKDLPPLSAADRIEHQRRKVKLLSMLDEACNLFLYSPI 469
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6BDV1 ((BEL1-like homeodomain protein 2 {ECO:0000313|RefSeq:XP_022775262.1}))
HSP 1 Score: 271.166 bits (692), Expect = 4.754e-80
Identity = 224/459 (48.80%), Postives = 274/459 (59.69%), Query Frame = 0
Match: A0A6P6BDV1 ((BEL1-like homeodomain protein 2 {ECO:0000313|RefSeq:XP_022775262.1}))
HSP 1 Score: 271.166 bits (692), Expect = 4.754e-80
Identity = 224/459 (48.80%), Postives = 274/459 (59.69%), Query Frame = 0
Query: 21 ANSSMSEDYRQHQGSGAGIFGFSNGLDRSQL------------MEQQIRRDKHRIQGLEAPPM-LVTMEQDSTGN--NFESAGMLSEMFNYSSGPASA----TELLEHQMMAANYHQSHRNIVARPP--TQDWYGSIRQDGIA-----------NDRDSSSSAIAAASHHHQGQGREMSTNNMNASSEAAMQLFLMNPSSARSHSPSHSMANSTLHMLLPNSASSVHQQVFQGPPAHFGPSS----QQFGSHVVSNDISHLGGHVVDHGHGQ----GQGHGQGLSLSLSSSLQHLEAAKAEEFRMGDGSGMIYFNQVGSGGGSNASNVQYPYKNNMNSLGVGHNQGMHLQGEVVMGQN-QFGFGSNSALGVVNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGTAANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEA 438
+ +SMS+DYRQ AGIF FSNG +RS + + QQI RDK R+QG E PP LV +E++ + +E+AGMLSEMFN+ SG A+A TELL+ Q + NY RPP T +WYG+ +Q + N+RDS A HHQ ++NA S AAM LFLMNP P + +N TLHMLLPN ++S+H GP FGPS+ QF D SH GG+ + G GQGLSLSLSSSLQHLEAAKAEE RMGDG G++Y+NQ GG S A+ QY Y LG H+Q +HLQG V GQN Q G S+LG+VN+LR SKY+KAAQELLEEFCSVGRGQFK NK GR N+ NP+S+ S A G ++SS+KD PPLS +DRI+HQRRKVKLLSMLDE
Sbjct: 32 STNSMSQDYRQ----AAGIFSFSNGFERSAVSHQEHQQQQQHHLVQQIPRDKLRVQGFEPPPPPLVGIEEEESSPLPVYETAGMLSEMFNFPSGVAAAATASTELLD-QPVHPNYR------AQRPPGNTNEWYGNRQQGVVGGLGQLGESKGHNNRDS------LAQQHHQ------QLPSINADSAAAMHLFLMNPQPRSPSPPPATSSN-TLHMLLPNPSTSLHGFNVSGPGGAFGPSTVLSPPQF---TWVPDSSHEGGNTSSQLNNPSEIGGVVEGQGLSLSLSSSLQHLEAAKAEELRMGDG-GLLYYNQ--GGGSSAAAQFQYKY------LG-SHHQPLHLQGGV--GQNHQVHVGYASSLGMVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNK-FGRNNT-NPSSNPGSSGAGGGGSSSSTKDLPPLSGADRIEHQRRKVKLLSMLDEV 449
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J8USY5 (POX domain-containing protein {ECO:0000259|SMART:SM00574})
HSP 1 Score: 261.536 bits (667), Expect = 1.374e-79
Identity = 225/473 (47.57%), Postives = 275/473 (58.14%), Query Frame = 0
Match: A0A7J8USY5 (POX domain-containing protein {ECO:0000259|SMART:SM00574})
HSP 1 Score: 261.536 bits (667), Expect = 1.374e-79
Identity = 225/473 (47.57%), Postives = 275/473 (58.14%), Query Frame = 0
Query: 21 ANSSMSEDYRQHQGSGAGIFGFSNGLDRSQL------------MEQQIRRDKHRIQGLEAPPM-LVTMEQDSTGN--NFESAGMLSEMFNYSSGPAS---------ATELLEHQMMAANYHQSHRNIVARPPTQDWYGS-IRQDGIANDRDSSSSAIAAASHHHQGQGREMSTNNMNASSEAAMQLFLMNPSSARSHSPSHSMANS--TLHMLLPNSASSVHQQVFQGP-----------PAHFG--PSSQQFGSHVVSNDISHLG--GHVVDHGHGQGQGHGQGLSLSLSSSLQHLEAAKAEEFRMGDGSGMIYFNQVGSGGGSNASNVQYPYKNNMNSLGVGHNQGMHLQGEVVMGQNQ----FGFGSNSALGVVNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGTAANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEAC--FYQSPF 445
+ +SMS+DY Q AGIF FSNG +RS + +EQQIRRDK R++G E PP LV +E++ + + +E+AGMLSEMFN+ SG A+ +TELL+ Q + NY ++HR T +WY + G S S I S Q Q ++NA S AAM LFLMNP P A S TLHMLLPN ++S+ GP PA F P S G + + +S L G VV+ GQGLSLSLSSSLQHLEAAKAEE RMGDG G++Y+NQ GGGS A QY +LG H+Q MHLQG V GQNQ GFGS +LG+VN+LR SKY+KAAQELLEEFCSVGRGQFK NK GR N+ + +SG A G ++SS+KD PPLSA+DRI+HQRRKVKLLSMLDEAC F SP
Sbjct: 36 STNSMSQDYHQ----AAGIFSFSNGFERSAVSHQEHQQQQQQHLEQQIRRDKLRVEGFEPPPPPLVGIEEEESTSLPVYETAGMLSEMFNFPSGAAAAAAAAAATASTELLD-QHVQPNY-RTHRPAPGN--TNEWYSNRQGVVGGLGQLGESKSHITRDSLAQQQQ----QLPSINADSAAAMHLFLMNPQQRSPSPPPPPPATSSNTLHMLLPNPSTSLQGFNVSGPGGGFGTSTVLSPAQFTWVPGSAHEGGNNTDSQLSSLNEIGSVVE---------GQGLSLSLSSSLQHLEAAKAEELRMGDG-GLLYYNQ---GGGSAAQFHQY------RNLGSHHHQTMHLQGGV--GQNQQVHHVGFGS--SLGMVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNK-FGRNNTNPSSDPGSSGGAGGGGSSSSTKDLPPLSAADRIEHQRRKVKLLSMLDEACNLFLYSPI 472
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AGH4 ((Putative BEL1-like homeodomain protein 2 {ECO:0000313|EMBL:MPA54601.1}) (Fragment))
HSP 1 Score: 261.536 bits (667), Expect = 2.291e-79
Identity = 224/457 (49.02%), Postives = 266/457 (58.21%), Query Frame = 0
Match: A0A5B7AGH4 ((Putative BEL1-like homeodomain protein 2 {ECO:0000313|EMBL:MPA54601.1}) (Fragment))
HSP 1 Score: 261.536 bits (667), Expect = 2.291e-79
Identity = 224/457 (49.02%), Postives = 266/457 (58.21%), Query Frame = 0
Query: 24 SMSEDYRQHQGSGAGIFGFSNGLDRSQL-----MEQQIRRDKHRIQGLE--APPMLVTMEQDSTGN---NFESAGMLSEMFNYSSGPASATELLEHQMMAANYHQSHRNIVARPPTQ-----DWYGS--------------IRQDGIANDRDSSSSAIAAASHHHQGQGREMSTNNMNASSEA-AMQLFLMNPSSARSHSPSHSMANS--TLHMLLPNSASSVHQ-QVFQGPPAHFGPSSQQFGSHVVSNDISHLGGHVVDHGHGQGQGHGQGLSLSLSSSLQHLEAAKA-EEFRMGDGS-GMIYFNQVGSGGGSNASNVQYPYKNNMNSLGVGHNQGM-----HLQGEVVMGQNQFGFGSNS--ALGVVNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGTAANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEA 438
SMS+DY Q G F FSNG +RSQ + QIRRDK R+QG E PP LV +E++ +G +E+AGMLSEMFN+ SG A+ATELLE NY RN RPP +WYG+ + + N+RDSS I AA HH+Q ++NA+ A AMQLFLMNP SPS S + TLHMLLPN +SS Q F P QF D SH G ++ Q QG GQGLSLSLSSSLQHLEAAKA EE RMG+ + GM++FNQ G G S+A + YPYKN + HLQG VV+GQ GFGS+S GVV +LR SKY+KAAQELLEEFCSVGRGQFK NK G+ N+ NPNS+ T+ AA SSKD PPL A+DRI+HQRRKVKLLSMLDE
Sbjct: 30 SMSQDYHQ------GFFTFSNGFERSQQEQQQQIAHQIRRDKLRVQGFEQPPPPPLVAIEEEESGGLPAVYETAGMLSEMFNFPSGAATATELLE------NY----RN--PRPPPSVVAGGEWYGNRQGMGVGGLGPLGDAKNQNVVNNRDSS---IVAAHHHNQ-------IPSINAADSATAMQLFLMNPQPRSPSSPSSSHPATSSTLHMLLPNPSSSTSTLQGFHNP--------SQF---TWVPDSSHEGPSTNNNPSDQIQGQGQGLSLSLSSSLQHLEAAKADEELRMGESTHGMLFFNQ-GGGSSSSAHDHVYPYKNLGGQGHGHGHDHQQPFHHHLQGGVVLGQTHVGFGSSSLGVGGVVTVLRNSKYVKAAQELLEEFCSVGRGQFKKNK-FGQHNT-NPNSNPTTAGAA------SSKDLPPLLAADRIEHQRRKVKLLSMLDEV 438
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7ZSF6 ((BEL1-like homeodomain protein 4 {ECO:0000313|RefSeq:XP_010254984.1}))
HSP 1 Score: 268.855 bits (686), Expect = 3.799e-79
Identity = 212/465 (45.59%), Postives = 264/465 (56.77%), Query Frame = 0
Match: A0A1U7ZSF6 ((BEL1-like homeodomain protein 4 {ECO:0000313|RefSeq:XP_010254984.1}))
HSP 1 Score: 268.855 bits (686), Expect = 3.799e-79
Identity = 212/465 (45.59%), Postives = 264/465 (56.77%), Query Frame = 0
Query: 24 SMSEDYRQHQGSGAGIFGFSNGLDRSQLMEQQI----------RRDKHRIQGLEAPPMLVTMEQDSTGN--NFESAGMLSEMFNYSSGPASATELLEHQMMAANYH-QSHRNIVARPPTQDWYGSIRQDGI-------------ANDRDSSSSAIAAASHHHQGQGREMSTNNMNASSEAAMQLFLMNPSS--ARSHSPSHSMANSTLHMLLPNSASSVHQQVFQGP----------------PAHF-----GPSSQQFGSHVVSNDISHLGGHVVDHGHGQGQGHGQGLSLSLSSSLQHLEAAKAEEFRMGDGSGMIYFNQVGSGGGSNASNVQYPYKNNMNSLGVGHNQGMHLQGEVVMGQN-QFGFGSNSALGVVNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGTAANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEA 438
SMS+ + Q GIF FSNG DRS Q+ RRDK R+QG EAPP LV +E + +G +E+ GMLSEMFN+ G A +LLE+Q+ A+NY A P +WYGS RQ + +N+RDS S A HHQ +++NA S AAMQLFLMNP + S +++ +HMLLPN +++ H Q FQ PA F G + +H+ ++ S GG V QGLSLSLSSSLQHLEAAKAEE RMGDG G+ Y+N GG +S YP KNN+ + HNQ +HLQG +GQN Q G S+LGVVN+LR SKY+KAAQELLEEFCSVGRGQ K N+ LG+ S NPN + GT+A GS SSSKD PPL A++RI+HQRRKVKL+SMLDE
Sbjct: 38 SMSQSFHQ------GIFSFSNGFDRSTTTHQEQQQAQHIAQQSRRDKLRVQGFEAPPPLVGIEAEESGELPGYETGGMLSEMFNFQPGVPVAADLLENQI-ASNYRLPRPPPTAATPAANEWYGS-RQGMVGGLGPLGDAKHPNSNNRDSHSIA-----QHHQ-------ISSLNADSAAAMQLFLMNPQTRSPSPPPQPPSSSSTPIHMLLPNPSTTTHLQGFQSAGAAAAAGVGFGSNSIHPAQFTWVPGGGGGENTATHL--SNTSKFGGGV----------ESQGLSLSLSSSLQHLEAAKAEELRMGDG-GVFYYNP----GGGVSSATSYPLKNNLGN----HNQPLHLQG---VGQNHQVHVGFGSSLGVVNVLRHSKYVKAAQELLEEFCSVGRGQLKNNR-LGKHQSTNPNPN--QGTSAGGS-PSSSKDLPPLPATERIEHQRRKVKLMSMLDEV 454
BLAST of DCAR_025660 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J9LNX3 (POX domain-containing protein {ECO:0000259|SMART:SM00574})
HSP 1 Score: 258.84 bits (660), Expect = 1.879e-78
Identity = 223/471 (47.35%), Postives = 273/471 (57.96%), Query Frame = 0
Match: A0A7J9LNX3 (POX domain-containing protein {ECO:0000259|SMART:SM00574})
HSP 1 Score: 258.84 bits (660), Expect = 1.879e-78
Identity = 223/471 (47.35%), Postives = 273/471 (57.96%), Query Frame = 0
Query: 21 ANSSMSEDYRQHQGSGAGIFGFSNGLDRSQL------------MEQQIRRDKHRIQGLEAPPM-LVTMEQDSTGN--NFESAGMLSEMFNYSSGPAS-------ATELLEHQMMAANYHQSHRNIVARPPTQDWYGS-IRQDGIANDRDSSSSAIAAASHHHQGQGREMSTNNMNASSEAAMQLFLMNPSSARSHSPSHSMANS--TLHMLLPNSASSVHQQVFQGPPAHFG-------------PSSQQFGSHVVSNDISHLG--GHVVDHGHGQGQGHGQGLSLSLSSSLQHLEAAKAEEFRMGDGSGMIYFNQVGSGGGSNASNVQYPYKNNMNSLGVGHNQGMHLQGEVVMGQNQ----FGFGSNSALGVVNLLRGSKYLKAAQELLEEFCSVGRGQFKTNKQLGRQNSINPNSSSTSGTAANGSAASSSKDPPPLSASDRIDHQRRKVKLLSMLDEAC--FYQSPF 445
+ +SMS+DY Q AGIF FSNG +RS + +EQQIRRDK R++G E PP LV +E++ + + +E+AGMLSEMFN+ SG A+ +TELL+ Q + NY ++HR T +WY + G S S I S Q Q ++NA S AAM LFLMNP P A S TLHMLLPN ++S+ GP FG P S G + + +S L G VV+ GQGLSLSLSSSLQHLEAAKAEE RMGDG G++Y+NQ G GS A QY +LG H+Q MHLQG V GQNQ GFGS +LG+VN+LR SKY+KAAQELLEEFCSVGRGQFK NK GR N+ + +SG A G ++SS+KD PPLSA+DRI+HQRRKVKLLSMLDEAC F SP
Sbjct: 36 STNSMSQDYHQ----AAGIFSFSNGFERSAVSHQEHQQQQQQHLEQQIRRDKLRVEGFEPPPPPLVGIEEEESTSLPVYETAGMLSEMFNFPSGAAAAAAAATASTELLD-QHVQPNY-RAHRPAPGN--TNEWYSNRQGGVGGLGQLGESKSHITRDSLAQQQQ----QLPSINADSAAAMHLFLMNPQQRSPSPPPPPPATSSNTLHMLLPNPSTSLQGFNVSGPGGGFGTSTVLSPPQFTWVPGSAHEGGNNTDSQLSSLNEIGSVVE---------GQGLSLSLSSSLQHLEAAKAEELRMGDG-GLLYYNQ---GEGSAAQFHQY------RNLGSHHHQTMHLQGGV--GQNQQVHHVGFGS--SLGMVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNK-FGRNNTNPSSDPGSSGGAGGGGSSSSTKDLPPLSAADRIEHQRRKVKLLSMLDEACNLFLYSPI 470
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5APS9 | E-Value: 1.198e-86, PID: 50.11 | Homeobox domain-containing protein {ECO:0000259|PR... [more] |
| A0A5B7AD28 | E-Value: 6.165e-85, PID: 49.67 | (Putative BEL1-like homeodomain protein 2 {ECO:000... [more] |
| F6GX07 | E-Value: 1.817e-83, PID: 48.92 | Homeobox domain-containing protein {ECO:0000259|PR... [more] |
| A0A5B7AHM6 | E-Value: 3.623e-82, PID: 49.23 | (Putative BEL1-like homeodomain protein 2 {ECO:000... [more] |
| A0A7J8PMG9 | E-Value: 5.255e-81, PID: 48.10 | POX domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A6P6BDV1 | E-Value: 4.754e-80, PID: 48.80 | (BEL1-like homeodomain protein 2 {ECO:0000313|RefS... [more] |
| A0A7J8USY5 | E-Value: 1.374e-79, PID: 47.57 | POX domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A5B7AGH4 | E-Value: 2.291e-79, PID: 49.02 | (Putative BEL1-like homeodomain protein 2 {ECO:000... [more] |
| A0A1U7ZSF6 | E-Value: 3.799e-79, PID: 45.59 | (BEL1-like homeodomain protein 4 {ECO:0000313|RefS... [more] |
| A0A7J9LNX3 | E-Value: 1.879e-78, PID: 47.35 | POX domain-containing protein {ECO:0000259|SMART:S... [more] |
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| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |