Resource Type:
Polypeptide
Name:
DCAR_026260
Identifier:
DCAR_026260.mRNA-protein
Sequence:
MTLSVTLCLHTSTSLHGTSSLAKKKICQSRCGNSDMGWLTKILKGSSHRI
SEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKK
VVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKP
KMDVLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAG
CNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCY
KERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSC
ERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLM
KVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRR
PKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHA
WLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMASTSSASSSSS
APPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLR
RTLDHIRLTGCFP*
Sequence Length:
564
Sequence Checksum:
9a518fa9b0453d86669b08e3946d0fe2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_026260, derives from mRNA, DCAR_026260. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ASS5 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 822.772 bits (2124), Expect = 0.000e+0
Identity = 409/528 (77.46%), Postives = 444/528 (84.09%), Query Frame = 0
Match: A0A5B7ASS5 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 822.772 bits (2124), Expect = 0.000e+0
Identity = 409/528 (77.46%), Postives = 444/528 (84.09%), Query Frame = 0
Query: 36 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 563
MGW TKILKGSSH+ISEGQY GKY +++ W GPS S DAWSDFE EDIDHAIA SL+EED KGKKV++ + E+ E H LE+DEQLAKA+QESL ++ PQYD+ NLF PYPY YP G+RICAGCN+EI HGR L+CMG WHPECFRCH+CN+PISD EFSMSENRP+HKSCYKE HHP+CDVCKNFIPTNAAGLIEYRAHPFW QKYCPSHEHD TPRCCSCERMEPRDTRYL+LDDGRKLCLECLDS+IMDTHECQPLYLEIQ+FYEGL MKVEQQIPLLLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQTISTISRRPKIGAGYRIIDM TEPY+LIR CEVTAILILY LPRLL GSIL HEMMHAWLRLKGYPNLSP+VEEGICQVLAHMWLDSEI+AGSGSN+ASTSS+SSSSS SSKKGKRS FEKKLG+FFKHQIESDTSAAYGDGFR GN+AVLKYGL+RTLDHI+LTG FP
Sbjct: 1 MGWFTKILKGSSHKISEGQYLGKYGDDRIWAGPSASADAWSDFENEDIDHAIAKSLSEEDQKGKKVID---------------------------DESHLEDDESH--------------LEDDEQLAKALQESLNMEPAPQYDYENLFPPYPYFYPAGYRICAGCNTEIDHGRSLNCMGAFWHPECFRCHACNLPISDREFSMSENRPYHKSCYKEHHHPRCDVCKNFIPTNAAGLIEYRAHPFWLQKYCPSHEHDGTPRCCSCERMEPRDTRYLVLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTISTISRRPKIGAGYRIIDMFTEPYKLIRRCEVTAILILYGLPRLLVGSILTHEMMHAWLRLKGYPNLSPDVEEGICQVLAHMWLDSEIIAGSGSNVASTSSSSSSSSDSSSSKKGKRSQFEKKLGDFFKHQIESDTSAAYGDGFRAGNQAVLKYGLKRTLDHIQLTGVFP 487
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TLF0 ((protein DA1-related 1-like {ECO:0000313|RefSeq:XP_027078386.1}))
HSP 1 Score: 815.839 bits (2106), Expect = 0.000e+0
Identity = 410/534 (76.78%), Postives = 451/534 (84.46%), Query Frame = 0
Match: A0A6P6TLF0 ((protein DA1-related 1-like {ECO:0000313|RefSeq:XP_027078386.1}))
HSP 1 Score: 815.839 bits (2106), Expect = 0.000e+0
Identity = 410/534 (76.78%), Postives = 451/534 (84.46%), Query Frame = 0
Query: 36 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTP---QYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSG---SNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 563
MGWLTKI KGSSH++ EGQYHGKY ++ WEGPS SVD WSDF+ E+IDHAIALSLA+ED + E K E + + E + + PE E + + + E EP+ LEEDEQLAKA+QESL ++S P QYD+G+ F PY + YP G+RICAGC +EIGHGRFLSCMG WHPECFRCH+C +PISDYEFSMSENRP+HKSCYKE HHPKCDVCKNFIPTNAAGLIEYRAHPFW QKYCPSHEHD TPRCCSCERMEP D RYL+LDDGRKLCLECLDS+IMDT+ECQPLYLEIQDFYEGL MKVEQQ+PLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQT+STI RRP+IG GYRIIDM TEPYRLIR CEVTAILILY LPRLLTGSILAHEMMHAWLRLKGY NLSPEVEEGICQVLAHMWLDSEI+AGSG ++ +S+SS++SSSS+ SSKKGKRS FEKKLGEFFKHQIESDTS AYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP
Sbjct: 38 MGWLTKIFKGSSHKLWEGQYHGKYEDDAIWEGPSTSVDVWSDFDNEEIDHAIALSLADEDQRAVAEEEQKASDEEDQRAVAEEDHQEAPE-EKDHKGKKVIEDEPN--------------LEEDEQLAKALQESLNVESPPSPPQYDYGSFFPPYQFFYPSGYRICAGCKAEIGHGRFLSCMGATWHPECFRCHACQLPISDYEFSMSENRPYHKSCYKELHHPKCDVCKNFIPTNAAGLIEYRAHPFWLQKYCPSHEHDGTPRCCSCERMEPVDARYLILDDGRKLCLECLDSAIMDTNECQPLYLEIQDFYEGLNMKVEQQVPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTVSTILRRPRIG-GYRIIDMFTEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYSNLSPEVEEGICQVLAHMWLDSEIIAGSGSNVASTSSSSSSASSSSSSNSSKKGKRSQFEKKLGEFFKHQIESDTSVAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 555
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U2L7 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0
Identity = 407/534 (76.22%), Postives = 449/534 (84.08%), Query Frame = 0
Match: A0A068U2L7 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0
Identity = 407/534 (76.22%), Postives = 449/534 (84.08%), Query Frame = 0
Query: 36 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTP---QYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSG---SNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 563
MGWLTKI KGSSH++ EGQYHGKY ++ WEGPS SVD WSDF+ E+IDHAIALSLA+ED + E K E + + E + + PE E + + + E EP+ LEEDEQLAKA+QESL ++S P +YD+G+ F PY + YP G+RICAGC +EIGHGRFLSCMG WHPECFRCH+C +PISDYEFSMSENRP+HKSCYKE HHPKCDVCKNFIPTNAAGLIEYRAHPFW QKYCPSHEHD TPRCCSCERMEP D RYL+LDDGRKLCLECLDS+IMDT+ECQPLYLEIQDFYEGL MKVEQQ+PLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQT+STI RRP+IG GYRIIDM TEPYRLIR CEVTAILILY LPRLLTGSILAHEMMHAWLRLKGY NLSPEVEEGICQVLAHMWLDSEI+AGSG ++ +S+SS++S SS+ SSKKGKRS FEKKLGEFFKHQIESDTS AYGDGFREGNKAVLKYGLRRTLDHIRLT CFP
Sbjct: 1 MGWLTKIFKGSSHKLWEGQYHGKYEDDAIWEGPSTSVDVWSDFDNEEIDHAIALSLADEDQRAVAEEEQKASDEEDQRAVAEEDHQEAPE-EKDHKGKKVIEDEPN--------------LEEDEQLAKALQESLNVESPPSPPRYDYGSFFPPYQFFYPSGYRICAGCKAEIGHGRFLSCMGATWHPECFRCHACQLPISDYEFSMSENRPYHKSCYKELHHPKCDVCKNFIPTNAAGLIEYRAHPFWLQKYCPSHEHDGTPRCCSCERMEPVDARYLILDDGRKLCLECLDSAIMDTNECQPLYLEIQDFYEGLNMKVEQQVPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTVSTILRRPRIG-GYRIIDMFTEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYSNLSPEVEEGICQVLAHMWLDSEIIAGSGSNVASTSSSSSSASPSSSSNSSKKGKRSQFEKKLGEFFKHQIESDTSVAYGDGFREGNKAVLKYGLRRTLDHIRLTECFP 518
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ATH8 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0
Identity = 407/535 (76.07%), Postives = 442/535 (82.62%), Query Frame = 0
Match: A0A5B7ATH8 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0
Identity = 407/535 (76.07%), Postives = 442/535 (82.62%), Query Frame = 0
Query: 36 MGWLTKILKGSSHRISEGQYHGKYHEE---KFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMA----GSGSNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 563
M W TKILKGSSH+ISEGQYHGKY ++ + W+GP S DAWSDFE+EDIDHAIALSLAEED KGKKV++ EPH LEEDEQLAKA+ ESL ++S P+YD+GNL P PY YP G RICA CNSEIGHGRFL+CMG VWHPECFRCH+CN+PISD EFSMSEN P+HKSCYKE+HHP+CDVCKNFIPTNAAGLIEYRAHPFW QKYCPSHEHD TPRCCSCERMEPRDTRYL+LDDGRKLCLECLDS+IMDTHECQPLYLEIQ+FYEGL MKVEQQIPLLLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQTISTI RRP+IGAG RIIDM TEPYRLIR CEVTAILIL+ LPRLLTGSILAHEMMHAWLRL GYPNLSP+VEEGICQVLAHMWL+SEI+A GSG N+ASTSS+SSSSS SSKKGKRS FEKKLG+FFKHQIESDTSAAYGDGFR GN+AVLKYGL+RTLDHI+LTG FP
Sbjct: 1 MDWFTKILKGSSHKISEGQYHGKYGDDGDDRTWDGPCTSADAWSDFEKEDIDHAIALSLAEEDQKGKKVID----------------------------------NEPH--------------LEEDEQLAKALHESLNMESPPRYDYGNLSPPNPYFYPAGHRICARCNSEIGHGRFLNCMGAVWHPECFRCHACNLPISDLEFSMSENHPYHKSCYKEQHHPRCDVCKNFIPTNAAGLIEYRAHPFWLQKYCPSHEHDGTPRCCSCERMEPRDTRYLVLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTISTILRRPRIGAGNRIIDMFTEPYRLIRRCEVTAILILFGLPRLLTGSILAHEMMHAWLRLAGYPNLSPDVEEGICQVLAHMWLESEIVAGSGSGSGGNVASTSSSSSSSSDSSSSKKGKRSQFEKKLGDFFKHQIESDTSAAYGDGFRAGNQAVLKYGLKRTLDHIQLTGVFP 487
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7M9Y3 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 412/543 (75.87%), Postives = 446/543 (82.14%), Query Frame = 0
Match: A0A6S7M9Y3 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 412/543 (75.87%), Postives = 446/543 (82.14%), Query Frame = 0
Query: 36 MGWLTKILKGSS--HRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKG--------KKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKP-KMDVLLEEDEQLAKAIQESLYID--STPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMA--STSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 563
MGWLTKILKGSS HRISEG+YH +Y E+ WE P ++ DA SDF+QE+ID AIA SL EED + KK + E S S E E + PEPE + P E +K +K D LEEDEQLA AIQESL I+ S P+ G+LF P +P +RICAGCN EIGHGRFLSCMGGVWHPECFRCH+CNIPISDYEFSMS+NRPFHKSCYKE HHPKCDVCKNFIPTN AGLIEYRAHPFW QKYCP HEHD TPRCCSCERMEPRDT+YLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGL MK+EQQ+PLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTI RRP++GAG RIIDM TEPY+L+R+CEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGY NL P+VEEGICQVLAHMWLDSEIMAGSG A S+SS+SSSSS P SSKKGKRS FEK+LGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLR TL+H+RLTG FP
Sbjct: 40 MGWLTKILKGSSSSHRISEGRYHDRYENEEIWEEPPSTEDALSDFDQEEIDRAIAFSLVEEDERSALSLVEDDKKSTRSSVHEEEGSVSSLE-EDHNDAVSSPEPEVRNKGSNSPSQEDQKGKKVIDEDPHLEEDEQLAMAIQESLNINMNSPPRNSHGSLFPRLPSFFPSVYRICAGCNGEIGHGRFLSCMGGVWHPECFRCHACNIPISDYEFSMSDNRPFHKSCYKEHHHPKCDVCKNFIPTNGAGLIEYRAHPFWLQKYCPGHEHDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLNMKIEQQVPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTIIRRPRVGAG-RIIDMFTEPYKLVRKCEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYSNLPPDVEEGICQVLAHMWLDSEIMAGSGGTNASSSSSSSSSSSSVPVSSKKGKRSQFEKQLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRSTLEHVRLTGRFP 580
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4FCP5 ((protein DA1-related 1 {ECO:0000313|RefSeq:XP_018829423.1, ECO:0000313|RefSeq:XP_018829424.1}))
HSP 1 Score: 790.415 bits (2040), Expect = 0.000e+0
Identity = 401/532 (75.38%), Postives = 452/532 (84.96%), Query Frame = 0
Match: A0A2I4FCP5 ((protein DA1-related 1 {ECO:0000313|RefSeq:XP_018829423.1, ECO:0000313|RefSeq:XP_018829424.1}))
HSP 1 Score: 790.415 bits (2040), Expect = 0.000e+0
Identity = 401/532 (75.38%), Postives = 452/532 (84.96%), Query Frame = 0
Query: 36 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEI----MAGSGSNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 563
MGWLTKILKGSS++ GQYHGKYHEE+ W+ NSVD +D E+E+ID AIALSLAEED KGKKV++ +SE E E +PE E E +PEE+ E V K V LEEDEQLAKA+QES+ ++S P+YD N+FQPYP+ G+RICAGCN+EIGHGRFLSCMG VWHPECFRC +CN PI+DYE+SMS N P+HKSC+KE++HP+CDVCKNFIPTN+AGLIEYRAHPFW QKYCPSHE D TPRCCSCERMEPRDTRYLLLDDGRKLCLECLDS+IMDTHECQPLYLEIQ+FYEGL MKVEQQ+P+LLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQT++TI RRP+IGAGYRIIDMITEPYRL R CEVTAIL+LY LPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEI + S+ +S+ S+SSSSS+ SSKKGKRSDFEKKLGEFFKHQIESDTS+AYGDGFR GN+AVLKYGL+RTLDHIR+TG FP
Sbjct: 1 MGWLTKILKGSSYK---GQYHGKYHEERNWDEARNSVDELTDIEKEEIDCAIALSLAEEDHKGKKVIDDDSQSE-EDEHLARAQPE-----EDEHLAQPEED-------EHVAK----VQLEEDEQLAKALQESMNVESPPRYDSRNIFQPYPFFSSGGYRICAGCNTEIGHGRFLSCMGAVWHPECFRCRACNQPITDYEYSMSGNHPYHKSCFKEQNHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHERDRTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRIIDMITEPYRLSRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSVSGSDVASSSSSSPSSSSSSSSNTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAVLKYGLKRTLDHIRMTGSFP 512
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7MA52 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 790.03 bits (2039), Expect = 0.000e+0
Identity = 412/543 (75.87%), Postives = 446/543 (82.14%), Query Frame = 0
Match: A0A6S7MA52 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 790.03 bits (2039), Expect = 0.000e+0
Identity = 412/543 (75.87%), Postives = 446/543 (82.14%), Query Frame = 0
Query: 36 MGWLTKILKGSS--HRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKG--------KKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKP-KMDVLLEEDEQLAKAIQESLYID--STPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMA--STSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 563
MGWLTKILKGSS HRISEG+YH +Y E+ WE P ++ DA SDF+QE+ID AIA SL EED + KK + E S S E E + PEPE + P E +K +K D LEEDEQLA AIQESL I+ S P+ G+LF P +P +RICAGCN EIGHGRFLSCMGGVWHPECFRCH+CNIPISDYEFSMS+NRPFHKSCYKE HHPKCDVCKNFIPTN AGLIEYRAHPFW QKYCP HEHD TPRCCSCERMEPRDT+YLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGL MK+EQQ+PLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTI RRP++GAG RIIDM TEPY+L+R+CEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGY NL P+VEEGICQVLAHMWLDSEIMAGSG A S+SS+SSSSS P SSKKGKRS FEK+LGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLR TL+H+RLTG FP
Sbjct: 1 MGWLTKILKGSSSSHRISEGRYHDRYENEEIWEEPPSTEDALSDFDQEEIDRAIAFSLVEEDERSALSLVEDDKKSTRSSVHEEEGSVSSLE-EDHNDAVSSPEPEVRNKGSNSPSQEDQKGKKVIDEDPHLEEDEQLAMAIQESLNINMNSPPRNSHGSLFPRLPSFFPSVYRICAGCNGEIGHGRFLSCMGGVWHPECFRCHACNIPISDYEFSMSDNRPFHKSCYKEHHHPKCDVCKNFIPTNGAGLIEYRAHPFWLQKYCPGHEHDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLNMKIEQQVPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTIIRRPRVGAG-RIIDMFTEPYKLVRKCEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYSNLPPDVEEGICQVLAHMWLDSEIMAGSGGTNASSSSSSSSSSSSVPVSSKKGKRSQFEKQLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRSTLEHVRLTGRFP 541
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DH51 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 787.334 bits (2032), Expect = 0.000e+0
Identity = 400/536 (74.63%), Postives = 436/536 (81.34%), Query Frame = 0
Match: A0A4S4DH51 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})
HSP 1 Score: 787.334 bits (2032), Expect = 0.000e+0
Identity = 400/536 (74.63%), Postives = 436/536 (81.34%), Query Frame = 0
Query: 36 MGWLTKILKGSSH--RISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMASTS------SASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 563
MGWLTK LKGSSH +ISEGQYHGKY EE W+GPS + AWSD E EDID AIA+SL+EED KGKKV++ D LEEDEQLAKA+QES+ +DS P+YD+G+LF PYPY P G+RICAGCN+EIGHGRFLSCMGGVWHPECF C++CN+PISDYEFSMSENRP+HKSCYKE+HHP+CDVC NFIPTN AGLIEYRAHPFW QKYCPSHE D TPRCCSCERMEP DT YLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGL MKVEQQ+PLLLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQT+STI RRP+IG G RIIDM TEPYRL R CEVTAILILY LPRLLTGSILAHEMMHAWLRLKGY NLSP+VEEGICQVLAHMWLDSEIMAGSG + ++T+ S+SSSSS+ SSKKGKRS+FEKKLG FFKHQIESDTSAAYGDGFR G++AVLKYGLRRTLDHIRLTG FP
Sbjct: 1 MGWLTKFLKGSSHNHKISEGQYHGKYEEEGIWDGPSPAA-AWSDSENEDIDRAIAISLSEEDQKGKKVID------------------------------------------------NDSHLEEDEQLAKALQESMKMDSPPRYDYGSLFPPYPYFNPSGYRICAGCNAEIGHGRFLSCMGGVWHPECFCCNACNMPISDYEFSMSENRPYHKSCYKEKHHPRCDVCNNFIPTNTAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPTDTSYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVSTILRRPRIG-GSRIIDMFTEPYRLTRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRNLSPDVEEGICQVLAHMWLDSEIMAGSGPSGSNTASTSSSSSSSSSSSSSSSSKKGKRSEFEKKLGAFFKHQIESDTSAAYGDGFRAGDQAVLKYGLRRTLDHIRLTGSFP 486
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0G2UNZ8 ((DA-related 1 protein 4 {ECO:0000313|EMBL:AKI32355.1}) (Fragment))
HSP 1 Score: 786.563 bits (2030), Expect = 0.000e+0
Identity = 386/546 (70.70%), Postives = 451/546 (82.60%), Query Frame = 0
Match: A0A0G2UNZ8 ((DA-related 1 protein 4 {ECO:0000313|EMBL:AKI32355.1}) (Fragment))
HSP 1 Score: 786.563 bits (2030), Expect = 0.000e+0
Identity = 386/546 (70.70%), Postives = 451/546 (82.60%), Query Frame = 0
Query: 36 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMD---------------VLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMA---STSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 563
MGW TK+LKGS H+I GQYHGKY E++ W+ +S+D +D E+EDID AIALSL+EED KGKKVV +SE E + + + E E + + + E E++ K + D LEEDEQLA+AIQESL I S P+YD + +P+L+PPG+RICAGC +EIG GRFLSCMGGVWHPECF CH+C++PI+DYEFSMS NRP+HK+CY+E+HHP+CDVCKNFIPTN++GLIEYRAHPFW QKYCPSHE D TPRCCSCERME RDT+YLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQ+FYEGL MK+EQQIP+LLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQT++TISRRP+IGAGYR IDMITEPYRLIR CEVTAIL+LY LPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWL+SE+ +G+G++ A ++SS+SSS S+ S+KKGKRSDFEKKLGEFFKHQIESDTS+AYGDGFR GN+A+LKYGL+RTLDHI +TG FP
Sbjct: 1 MGWFTKLLKGSDHKILRGQYHGKYGEDRIWDNHHSSMDDLTDIEKEDIDRAIALSLSEEDHKGKKVVHYDSQSEDEELCKIDDDEEDEHLVKVHLDEDERLAKIQQQEEERLAKTQQDERLAKIQQEDERLAKAQLEEDEQLARAIQESLKIGSPPRYDNDSSILSFPHLFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKACYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRAIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGTGNDGASSSASSSSSSSPSSSVSTKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAMLKYGLKRTLDHIHMTGSFP 546
BLAST of DCAR_026260 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0G2UMG5 ((DA-related 1 protein 4 {ECO:0000313|EMBL:AKI32344.1}) (Fragment))
HSP 1 Score: 786.563 bits (2030), Expect = 0.000e+0
Identity = 386/546 (70.70%), Postives = 451/546 (82.60%), Query Frame = 0
Match: A0A0G2UMG5 ((DA-related 1 protein 4 {ECO:0000313|EMBL:AKI32344.1}) (Fragment))
HSP 1 Score: 786.563 bits (2030), Expect = 0.000e+0
Identity = 386/546 (70.70%), Postives = 451/546 (82.60%), Query Frame = 0
Query: 36 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMD---------------VLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMA---STSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 563
MGW TK+LKGS H+I GQYHGKY E++ W+ +S+D +D E+EDID AIALSL+EED KGKKVV +SE E + + + E E + + + E E++ K + D LEEDEQLA+AIQESL I S P+YD + +P+L+PPG+RICAGC +EIG GRFLSCMGGVWHPECF CH+C++PI+DYEFSMS NRP+HK+CY+E+HHP+CDVCKNFIPTN++GLIEYRAHPFW QKYCPSHE D TPRCCSCERME RDT+YLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQ+FYEGL MK+EQQIP+LLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQT++TISRRP+IGAGYR IDMITEPYRLIR CEVTAIL+LY LPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWL+SE+ +G+G++ A ++SS+SSS S+ S+KKGKRSDFEKKLGEFFKHQIESDTS+AYGDGFR GN+A+LKYGL+RTLDHI +TG FP
Sbjct: 1 MGWFTKLLKGSDHKILRGQYHGKYGEDRIWDNHHSSMDDLTDIEKEDIDRAIALSLSEEDHKGKKVVHYDSQSEDEELCKIDDDEEDEHLVKVHLDEDERLAKIQQQEEERLAKTQQDERLAKIQQEDERLAKAQLEEDEQLARAIQESLKIGSPPRYDNDSSILSFPHLFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKACYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRAIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGTGNDGASSSASSSSSSSPSSSVSTKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAMLKYGLKRTLDHIHMTGSFP 546
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7ASS5 | E-Value: 0.000e+0, PID: 77.46 | LIM zinc-binding domain-containing protein {ECO:00... [more] |
| A0A6P6TLF0 | E-Value: 0.000e+0, PID: 76.78 | (protein DA1-related 1-like {ECO:0000313|RefSeq:XP... [more] |
| A0A068U2L7 | E-Value: 0.000e+0, PID: 76.22 | LIM zinc-binding domain-containing protein {ECO:00... [more] |
| A0A5B7ATH8 | E-Value: 0.000e+0, PID: 76.07 | LIM zinc-binding domain-containing protein {ECO:00... [more] |
| A0A6S7M9Y3 | E-Value: 0.000e+0, PID: 75.87 | LIM zinc-binding domain-containing protein {ECO:00... [more] |
| A0A2I4FCP5 | E-Value: 0.000e+0, PID: 75.38 | (protein DA1-related 1 {ECO:0000313|RefSeq:XP_0188... [more] |
| A0A6S7MA52 | E-Value: 0.000e+0, PID: 75.87 | LIM zinc-binding domain-containing protein {ECO:00... [more] |
| A0A4S4DH51 | E-Value: 0.000e+0, PID: 74.63 | LIM zinc-binding domain-containing protein {ECO:00... [more] |
| A0A0G2UNZ8 | E-Value: 0.000e+0, PID: 70.70 | (DA-related 1 protein 4 {ECO:0000313|EMBL:AKI32355... [more] |
| A0A0G2UMG5 | E-Value: 0.000e+0, PID: 70.70 | (DA-related 1 protein 4 {ECO:0000313|EMBL:AKI32344... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |