MEPTDSGLGTNQTDPERSSILYGLPDDIAILCLARIPRKYHASLKCVSKR
WRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWK
RVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTW
NEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKS
HVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDS
DMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTR
PPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLLCPDVGILSPSSAT
CALLSIPRVKTDAACRHNTMCKTGKFTLFQLQSEIPCDLKAISPFFFDSS
DSCIIASDLATSE*
| Relationships |
|---|
| The polypeptide, DCAR_025187, derives from mRNA, DCAR_025187. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A251RSU1 ((Putative SKP1 interacting partner 4 {ECO:0000313|EMBL:OTF87422.1}))
HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 247/338 (73.08%), Postives = 296/338 (87.57%), Query Frame = 0
Query: 1 MEPTDS-GLGTNQTDPERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKSHVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTRPPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLL 337
ME T+S G++QT +SS++ GLPDDIA+ CLARIPRKYH+ LKCVS++WR+LVC +EW +YRQKHNL+ETWIYALC+DKSE L Y+LDP++ KKGWKR+ +L PR L+RKG+GF+VLG IY +GGCGW+EDATDEVYCYDA+ N W+EA PLST RCYFACEA+DDKMYAIGG+GS SSDPHSWDTFDS TN W SH+DPNIVP+IEDS+VLDGKIYIRCG+SAVSSHVYAVVY+PLNGTWQH D+DM SGWRGPG+VVD YVLDQSSGTR+M+W+KD+REW A GRL+ +LTRPPC+LVAIGK ++VVGKGLSTVVF+V AA ++DG+L
Sbjct: 1 MELTESVPEGSSQTVITQSSLISGLPDDIALTCLARIPRKYHSLLKCVSRKWRDLVCSEEWYTYRQKHNLSETWIYALCKDKSEQLCCYVLDPDLPKKGWKRIPDLSPRCLKRKGVGFEVLGKTIYFLGGCGWVEDATDEVYCYDASRNAWSEASPLSTPRCYFACEAMDDKMYAIGGLGSKSSDPHSWDTFDSTTNSWTSHMDPNIVPEIEDSLVLDGKIYIRCGLSAVSSHVYAVVYDPLNGTWQHADADMMSGWRGPGIVVDNTLYVLDQSSGTRVMMWRKDSREWEAFGRLAAILTRPPCRLVAIGKKMFVVGKGLSTVVFDVDKAA-NIDGML 337
Match: A0A4S4F4U0 (60S ribosomal protein L36 {ECO:0000256|RuleBase:RU000665})
HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 246/337 (73.00%), Postives = 282/337 (83.68%), Query Frame = 0
Query: 1 MEPTDSGL-GTNQTDPERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKSHVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTRPPCQLVAIGKSIYVVGKGLSTVVFNVG---NAAGSM 333
ME T+ G ++Q + ++ GLPDDIA+ CLAR+PRKYHA +KCVSKRWRELVC +EW SYRQKHNL ETWIYALCRDK E L Y+LDPN S+K WKR+Q+LPP SL+RKGMGF+VLG ++YL+GGCGW+EDATDEVYCYDAA N WN+A PLSTARCYFA E L+DK+YA+GG+GS SSDP SWDT+D TN WKS D N+VPDIEDS+ LDGKIYIRCG SAVSSHVYAVVYEP GTWQH D+DMASGWRGP VVV+G YVLDQSSGTRLM+W+ D +EW AVGRLSPLLTRPPC+LVAIGKSI+V+GKGLSTVV NVG NA G M
Sbjct: 126 METTEIGAEDSSQIELAHLPLICGLPDDIALFCLARVPRKYHALVKCVSKRWRELVCSKEWHSYRQKHNLDETWIYALCRDKFEQLCCYVLDPNASRKSWKRIQDLPPSSLKRKGMGFEVLGKEVYLLGGCGWVEDATDEVYCYDAAVNAWNKAAPLSTARCYFASEVLNDKIYAVGGLGSNSSDPRSWDTYDVHTNTWKSQSDANVVPDIEDSIALDGKIYIRCGSSAVSSHVYAVVYEPSRGTWQHADADMASGWRGPAVVVEGTLYVLDQSSGTRLMMWQGDRKEWTAVGRLSPLLTRPPCRLVAIGKSIFVIGKGLSTVVLNVGDARNAGGVM 462
Match: A0A5J4ZFD2 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0
Identity = 249/338 (73.67%), Postives = 289/338 (85.50%), Query Frame = 0
Query: 1 MEPTDSG-LGTNQTDPERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKSHVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTRPPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLL 337
MEP +SG ++Q +S ++ GLPDDIA+ C+AR+PRKYHA LKCVSKRWREL+C + W SYR+KHNL ETWIYA CRDK E LS Y+LDPN+SK+ WKRVQ +PP SL+RKGMGF+VLG K+YL+GGCGW+EDATDEVYCYDA NTW+EA PLSTARCYFACE LD+K+YAIGG+GS SSDPHSWDT+D TN W+SH DPN+VPDIEDS+V DGKIYIRCG SAVSSH AVVYEP NGTWQH D+DM SGWRGP VVVDG YVLDQSSGTRLM+W+KD REWVAVGRLSPLLTRPPCQLVAI ++I+V+GKGLSTVV +VGN AG + G++
Sbjct: 9 MEPVESGSEDSSQNFVVQSPLICGLPDDIALFCIARVPRKYHALLKCVSKRWRELLCSEGWHSYRRKHNLNETWIYAFCRDKFEQLSCYVLDPNLSKRCWKRVQGIPPCSLKRKGMGFEVLGKKVYLLGGCGWVEDATDEVYCYDATMNTWSEAAPLSTARCYFACEVLDEKIYAIGGLGSNSSDPHSWDTYDPHTNSWRSHSDPNVVPDIEDSIVFDGKIYIRCG-SAVSSH--AVVYEPSNGTWQHADADMVSGWRGPAVVVDGTLYVLDQSSGTRLMMWQKDRREWVAVGRLSPLLTRPPCQLVAIEENIFVIGKGLSTVVLDVGN-AGHVGGVM 342
Match: A0A7J7HPA6 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 525.398 bits (1352), Expect = 0.000e+0
Identity = 245/330 (74.24%), Postives = 279/330 (84.55%), Query Frame = 0
Query: 1 MEPTDSGLGTN-QTDPERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKSHVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTRPPCQLVAIGKSIYVVGKGLSTVVFNVGNA 329
ME T+ G + Q + ++ GLPDDIA+ CLAR+PRKYHA LKCVSKRWRELVC +EW SYRQKHNL ETWIYALCRDK E L Y+LDPN S+K WKR+Q+LPP SL+RKGMGF+VLG ++YL+GGCGW+EDATDEVYCYDAA N WN+A PLSTARCYFA E L+DK+YA+GG+GS SSDP SWDT+D TN WKS D N+VPDIEDS+ LDGKIYIRCG SAVSSHVYAVVYEP GTWQH D+DMASGWRGP VVV+G YVLDQSSGTRLM+W+ D +EW AVGRLSPLLTRPPC+LVAIGKSI+V+GKGLSTVV NVGNA
Sbjct: 5 METTEIGAEDSCQIELAHLPLICGLPDDIALFCLARVPRKYHALLKCVSKRWRELVCSKEWHSYRQKHNLDETWIYALCRDKFEQLCCYVLDPNASRKSWKRIQDLPPSSLKRKGMGFEVLGKEVYLLGGCGWVEDATDEVYCYDAAVNAWNKAAPLSTARCYFASEVLNDKIYAVGGLGSNSSDPRSWDTYDVHTNTWKSQSDANVVPDIEDSIALDGKIYIRCGSSAVSSHVYAVVYEPSRGTWQHADADMASGWRGPAVVVEGTLYVLDQSSGTRLMMWQGDRKEWTAVGRLSPLLTRPPCRLVAIGKSIFVIGKGLSTVVLNVGNA 334
Match: A0A5B7B864 ((Putative F-box/kelch-repeat protein SKIP4 {ECO:0000313|EMBL:MPA64564.1}))
HSP 1 Score: 523.087 bits (1346), Expect = 0.000e+0
Identity = 242/321 (75.39%), Postives = 280/321 (87.23%), Query Frame = 0
Query: 17 RSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKSHVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTRPPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLL 337
+S ++ GLPDDI++ CLAR+PRKYHA LKCVSKRWRELVC +EW SYR+KHNL ETWIYALCRDK E LS Y+LDP +SK+ WKR+Q L P SL+RKGMGF+VLG K+YL+GGCGW+EDATDEVYCYDA NTW+EA PLSTARCYFACE LD+K+YAIGG+GS SSD HSWD +D TN W+SH DPNIVPDIEDS+VLD KIYIRCG AVSSHVYAVVYEP NGTWQH D+DM SGWRGP VV+DG YVLDQSSGTR+M+W+KD REWVAVGRLSPLLTRPPC+LVAI K+I+V+GKGLSTVV +VG+ AG+M G++
Sbjct: 15 QSPLICGLPDDISLFCLARVPRKYHALLKCVSKRWRELVCSEEWHSYRRKHNLDETWIYALCRDKFEQLSCYVLDPKLSKRCWKRIQGLRPCSLKRKGMGFEVLGKKVYLLGGCGWVEDATDEVYCYDATMNTWSEAAPLSTARCYFACEVLDEKIYAIGGLGSNSSDSHSWDIYDPHTNSWRSHSDPNIVPDIEDSIVLDRKIYIRCGSFAVSSHVYAVVYEPSNGTWQHADADMVSGWRGPAVVIDGTLYVLDQSSGTRMMMWQKDRREWVAVGRLSPLLTRPPCRLVAIEKNIFVIGKGLSTVVLDVGD-AGNMGGVM 334
Match: A0A6S7MSA0 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4091068.1}))
HSP 1 Score: 521.546 bits (1342), Expect = 0.000e+0
Identity = 237/329 (72.04%), Postives = 283/329 (86.02%), Query Frame = 0
Query: 9 GTNQTDPERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKSHVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTRPPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLL 337
G+NQT +SS++ GLPDDIA+ CLARIPR+YH+ LKCVS+ WR+LVC ++WQSYR+KHNL ETWIYALC+DK E L Y+LDPN+ KKGWKR+ +LPP L+RKG+GF+VLG IY +GGCGWIEDATDEVY YDA+ N W+E+ PLSTARCYFACE++DDKMYAIGG+GS SSDPHSWDTFDS TN W SH+DPN+VP+IEDSV+L+GKIYI+CG SAVSSHVYAVVY+PLNGTWQH DSDM GWRGP +VV+ YVLDQSSGTR+M W+KD REW A GRLS +LTRPPC++V IGK I+VVGKGLSTVVF+V AA ++DG+L
Sbjct: 37 GSNQTVSTQSSLINGLPDDIAVTCLARIPRRYHSLLKCVSRTWRDLVCSKQWQSYREKHNLTETWIYALCKDKMEQLCCYVLDPNLPKKGWKRIHDLPPHCLKRKGVGFEVLGKNIYFLGGCGWIEDATDEVYSYDASRNAWSESSPLSTARCYFACESMDDKMYAIGGLGSKSSDPHSWDTFDSNTNTWTSHMDPNVVPEIEDSVILNGKIYIKCGSSAVSSHVYAVVYDPLNGTWQHADSDMVCGWRGPAIVVEDTLYVLDQSSGTRVMTWRKDKREWEAFGRLSAVLTRPPCRVVGIGKKIFVVGKGLSTVVFDVDKAA-NVDGVL 364
Match: A0A2J6KM92 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 520.39 bits (1339), Expect = 0.000e+0
Identity = 238/329 (72.34%), Postives = 282/329 (85.71%), Query Frame = 0
Query: 9 GTNQTDPERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKSHVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTRPPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLL 337
G+NQT +SS++ GLPDDIA+ CLARIPR+YH+ LKCVS+ WR+LVC ++WQSYR+KHNL ETWIYALC+DK E L Y+LDPN+ KKGWKR+ +LPP L+RKG+GF+VLG IY +GGCGWIEDATDEVY YDA+ N W EA PLSTARCYFACE++DDKMYAIGG+GS SSDPHSWDTFDS TN W SH+DPN+VP+IEDSV+L+GKIYI+CG SAVSSHVYAVVY+PLNGTWQH DSDM GWRGP +VV+ YVLDQSSGTR+M W+KD REW A GRLS +LTRPPC++V IGK I+VVGKGLSTVVF+V AA ++DG+L
Sbjct: 10 GSNQTVSTQSSLINGLPDDIALTCLARIPRRYHSLLKCVSRTWRDLVCSKQWQSYREKHNLTETWIYALCKDKMEQLCCYVLDPNLPKKGWKRIPDLPPHCLKRKGVGFEVLGKNIYFLGGCGWIEDATDEVYSYDASRNAWTEASPLSTARCYFACESMDDKMYAIGGLGSKSSDPHSWDTFDSNTNTWTSHMDPNVVPEIEDSVILNGKIYIKCGSSAVSSHVYAVVYDPLNGTWQHADSDMVCGWRGPAIVVEDTLYVLDQSSGTRVMTWRKDRREWEAFGRLSAVLTRPPCRVVGIGKKIFVVGKGLSTVVFDVDKAA-NVDGVL 337
Match: A0A7J0G7S3 ((SKP1 interacting partner 4 {ECO:0000313|EMBL:GFZ06855.1}))
HSP 1 Score: 518.464 bits (1334), Expect = 0.000e+0
Identity = 243/338 (71.89%), Postives = 284/338 (84.02%), Query Frame = 0
Query: 1 MEPTDSGLG-TNQTDPERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKSHVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTRPPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLL 337
ME T SG ++Q +S +L GLPDD+A+ CLAR+PRKYHA LKCVSKRWRE VC +EW SYR+KHNL ETWIYALCRDK E L Y+LDPN S++ WKR Q+LP L+RKGMGF+VLG K+YL+GGCGW+EDAT+E+YCYDA+ NTWNEA PLSTARC+F E LD+K+YAIGG+GS SSDPHSWDT+D TN WKS DPN+VP+IEDS+VLDGKIYIRCG S+VSSHVYAVVYEP +GTWQH D+DM SGWRGP VVVDG YVLDQSSGTRLM+W KD +EWVAVGRLSP L RPPC+LVAI KSIYV+GKGLSTVV NVG+ AG++ G++
Sbjct: 1 MERTQSGDAVSSQIQIAQSPLLCGLPDDVALFCLARVPRKYHAVLKCVSKRWREFVCSEEWHSYRRKHNLDETWIYALCRDKFEQLCCYVLDPNASRRCWKRAQDLPSCCLKRKGMGFEVLGKKVYLVGGCGWVEDATNEIYCYDASMNTWNEAAPLSTARCFFTSEVLDNKIYAIGGLGSNSSDPHSWDTYDPHTNSWKSQSDPNVVPEIEDSIVLDGKIYIRCGSSSVSSHVYAVVYEPSSGTWQHADADMVSGWRGPAVVVDGTLYVLDQSSGTRLMMWLKDMKEWVAVGRLSPQLMRPPCRLVAIEKSIYVIGKGLSTVVLNVGD-AGNVGGVM 337
Match: A0A540MFX6 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0
Identity = 238/335 (71.04%), Postives = 282/335 (84.18%), Query Frame = 0
Query: 3 PTDSGLGTNQTDPERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKSHVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTRPPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLL 337
P D +QT+ + +L GLPDDIA+ CLAR+PRKYH LKCVSKRWR+LVC +EW SYR+KH L ETWIYALCRDK + L FY+LDPN S++ WK V LPPR ++RKGMGF+V+G+K+YL+GGCGW EDATDEVYCYDA+ N W+EA PLSTARCYFACE LDDK+Y+IGG+GS SS PHSWD +D CT+ WK H DPNIVP+IEDSVV+ GKIYIRCG SAV+SHV+AVVYEP +GTWQH DS+M SGWRGP VV+DG YVLDQSSGTRLM+W+K+TREW+ VGRLS LLTRPPCQLVAIGK YVVGKGLSTV+F+V N AG+M+G++
Sbjct: 72 PGDGSDVISQTELTQEPLLCGLPDDIALFCLARVPRKYHTLLKCVSKRWRDLVCSEEWHSYRRKHKLDETWIYALCRDKLDRLCFYVLDPNSSRRSWKLVHGLPPRIMKRKGMGFEVIGNKVYLLGGCGWCEDATDEVYCYDASLNAWSEASPLSTARCYFACEILDDKIYSIGGLGSISSYPHSWDIYDPCTDSWKFHSDPNIVPEIEDSVVMAGKIYIRCGTSAVTSHVHAVVYEPSSGTWQHADSEMVSGWRGPAVVIDGTLYVLDQSSGTRLMMWEKETREWIPVGRLSSLLTRPPCQLVAIGKKFYVVGKGLSTVMFDVEN-AGNMEGVM 405
Match: A0A2R6Q8Y9 ((F-box/kelch-repeat protein {ECO:0000313|EMBL:PSS04348.1}))
HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0
Identity = 243/338 (71.89%), Postives = 285/338 (84.32%), Query Frame = 0
Query: 1 MEPTDSGLG-TNQTDPERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEWQSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVLGSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGSGSSDPHSWDTFDSCTNCWKSHVDPNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYEPLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLTRPPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLL 337
ME T SG ++Q +S +L GLPDD+A+ CLAR+PRKYHA LKCVSKRWRE VC +EW SYR+KHNL ETWIYALCRDK E L Y+LDPN S++ WKRVQ+LP L+RKGMGF+VLG +YL+GGCGW+EDAT+E+YCYDA+ NTWNEA PLSTARC+FA E LD+K+YAIGG+GS SSDPHSWDT+D TN WKS DPN+VP+IEDS++LDGKIYIRCG S+VSSHVYAVVYEP +GTWQH D+DMASGWRG VVVDG YVLDQSSGTRLM+W KD +EWVAVGRLSP L RPPC+LVAI KSIYV+GKGLSTVV NVG+ AG++ G++
Sbjct: 1 MERTQSGDAVSSQIQIAQSPLLCGLPDDVALFCLARVPRKYHAVLKCVSKRWREFVCSEEWHSYRRKHNLDETWIYALCRDKFEQLCCYVLDPNASRRCWKRVQDLPSCCLKRKGMGFEVLGKTVYLVGGCGWVEDATNEIYCYDASMNTWNEAAPLSTARCFFASEVLDNKIYAIGGLGSNSSDPHSWDTYDPHTNSWKSQSDPNVVPEIEDSIILDGKIYIRCGSSSVSSHVYAVVYEPSSGTWQHADADMASGWRGLAVVVDGTLYVLDQSSGTRLMMWLKDMKEWVAVGRLSPQLMRPPCRLVAIEKSIYVIGKGLSTVVLNVGD-AGNVGGVM 337
| Match Name | Stats | Description |
|---|---|---|
| A0A251RSU1 | E-Value: 0.000e+0, PID: 73.08 | (Putative SKP1 interacting partner 4 {ECO:0000313|... [more] |
| A0A4S4F4U0 | E-Value: 0.000e+0, PID: 73.00 | 60S ribosomal protein L36 {ECO:0000256|RuleBase:RU... [more] |
| A0A5J4ZFD2 | E-Value: 0.000e+0, PID: 73.67 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A7J7HPA6 | E-Value: 0.000e+0, PID: 74.24 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A5B7B864 | E-Value: 0.000e+0, PID: 75.39 | (Putative F-box/kelch-repeat protein SKIP4 {ECO:00... [more] |
| A0A6S7MSA0 | E-Value: 0.000e+0, PID: 72.04 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4091... [more] |
| A0A2J6KM92 | E-Value: 0.000e+0, PID: 72.34 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A7J0G7S3 | E-Value: 0.000e+0, PID: 71.89 | (SKP1 interacting partner 4 {ECO:0000313|EMBL:GFZ0... [more] |
| A0A540MFX6 | E-Value: 0.000e+0, PID: 71.04 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A2R6Q8Y9 | E-Value: 0.000e+0, PID: 71.89 | (F-box/kelch-repeat protein {ECO:0000313|EMBL:PSS0... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |