Resource Type:
Polypeptide
Name:
DCAR_020976
Identifier:
DCAR_020976.mRNA-protein
Sequence:
MDGGGNARVNSGATARGGGDGLPAIGIQIHSRRLPDFLQTVKLKYVKLGY
HYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFA
VLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDD
SSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALD
NLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGG
MGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNC
LFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGA
GKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFN
PHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHR
FGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHV
KASSNSPWDDCIDKYPVTVVS*
Sequence Length:
522
Sequence Checksum:
66130d4834969b2ed0d4b6e0a58dfeb0
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_020976, derives from mRNA, DCAR_020976. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RMT4 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 930.628 bits (2404), Expect = 0.000e+0
Identity = 439/521 (84.26%), Postives = 480/521 (92.13%), Query Frame = 0
Match: A0A2R6RMT4 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 930.628 bits (2404), Expect = 0.000e+0
Identity = 439/521 (84.26%), Postives = 480/521 (92.13%), Query Frame = 0
Query: 1 MDGGGNARVNSGATARGGGDGLPAIGIQIH-SRRLPDFLQTVKLKYVKLGYHYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFAVLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDDSSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALDNLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGGMGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGAGKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFNPHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHVKASSNSPWDDCIDKYPVTVV 520
MDGGG+A+VN+G GG G+ +G+QIH SRRLPDFLQ+V LKYVKLGYHYL+SNL TLCLIP + +IL+EASQMN DDIRQLWLHLQYNLV V+VC AVLVFG T YIMTRPR VYLVDY+CYRAPD LKA ERFM HSRLTGDFD+SSLEFQR+ILERSGLGEETYVPEAMH IPP+PSMAAAR E+E+VM+GALD LF NT +K K+IGILVVNCSLFNPTPSLSAMI+NKYKLRGN+RSFNLGGMGCSAGVIAID+AK+LLQVHRNTYAVVVSTENITQNWYFGN K+MLIPNCLFRVGG+AVLLSNKSAD+RRAKYKLVHVVRTH+GADDKAF CVYQE+D AGK GVSLSKDLMAIAGGALKTNITTLGP+VLPISEQLLFFATL+VKK FN ++KPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRM LHRFGNTS+SSIWYELAYTEAKGR+RKGHRVWQIAFGSGFKCNSAVWQALR+VK S + PW+DCID YPV ++
Sbjct: 1 MDGGGDAQVNAG---HGGDSGVAEVGVQIHHSRRLPDFLQSVNLKYVKLGYHYLVSNLLTLCLIPTMAVILVEASQMNPDDIRQLWLHLQYNLVSVIVCSAVLVFGSTVYIMTRPRPVYLVDYSCYRAPDELKAPFERFMNHSRLTGDFDESSLEFQRKILERSGLGEETYVPEAMHFIPPRPSMAAAREESEKVMFGALDTLFVNTSVKPKNIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKELLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSADRRRAKYKLVHVVRTHKGADDKAFHCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLVVKKLFNKNIKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGHRVWQIAFGSGFKCNSAVWQALRNVKPSHSGPWEDCIDNYPVKLL 518
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6IGM5 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 927.932 bits (2397), Expect = 0.000e+0
Identity = 439/522 (84.10%), Postives = 479/522 (91.76%), Query Frame = 0
Match: A0A1J6IGM5 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 927.932 bits (2397), Expect = 0.000e+0
Identity = 439/522 (84.10%), Postives = 479/522 (91.76%), Query Frame = 0
Query: 1 MDGGGNARVNSGATARGGGDGLPAIGIQIH-SRRLPDFLQTVKLKYVKLGYHYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFAVLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDDSSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALDNLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGGMGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGAGKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFNPHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHVKASSNSPWDDCIDKYPVTVVS 521
MDGG A+VN TARGG + +G+QI SRRLPDFLQ+V LKYVKLGYHYLISNL TLCLIPV+ +ILIEASQMN DDIR LWLHL+YNLV V++C AVLVFG T YIMTRPR VYLVDY+CY+APD LKA ERFM+HSRLTGDFD+SSLEFQR+ILERSGLG+ETYVPEAMH +PPQPSM AAR EAE+VM+GALDNLFANT +K KDIG+LVVNCSLFNPTPSLSAMI+NKYKLRGN+RSFNLGGMGCSAGVIA+D+AKD+LQVHRNTYAVVVSTENITQNWYFGN K+MLIPNCLFRVGGAAVLLSNKS D+RRAKYKLVHVVRTHRGADDKAFRCVYQE+DGAGK GVSLSKDLMAIAGGALKTNITTLGP+VLPISEQLLFFATL++KK N HVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQL +HVEASRM LHRFGNTS+SSIWYELAYTEAKGR+RKG++VWQIAFGSGFKCNSAVWQALR+VK S N PW+DCID+YPV VVS
Sbjct: 1 MDGGAGAQVN---TARGGAE---PVGVQIQQSRRLPDFLQSVNLKYVKLGYHYLISNLLTLCLIPVMAVILIEASQMNPDDIRHLWLHLKYNLVSVIICSAVLVFGSTVYIMTRPRPVYLVDYSCYKAPDELKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHYLPPQPSMQAAREEAEQVMFGALDNLFANTSVKPKDIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKSVDRRRAKYKLVHVVRTHRGADDKAFRCVYQEQDGAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLIIKKICNKHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLTQVHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGNKVWQIAFGSGFKCNSAVWQALRNVKPSRNGPWEDCIDRYPVKVVS 516
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A225 (Very-long-chain 3-oxoacyl-CoA synthase {ECO:0000256|ARBA:ARBA00012307} (2.3.1.199 {ECO:0000256|ARBA:ARBA00012307}) (Fragment))
HSP 1 Score: 926.006 bits (2392), Expect = 0.000e+0
Identity = 443/521 (85.03%), Postives = 478/521 (91.75%), Query Frame = 0
Match: A0A5B7A225 (Very-long-chain 3-oxoacyl-CoA synthase {ECO:0000256|ARBA:ARBA00012307} (2.3.1.199 {ECO:0000256|ARBA:ARBA00012307}) (Fragment))
HSP 1 Score: 926.006 bits (2392), Expect = 0.000e+0
Identity = 443/521 (85.03%), Postives = 478/521 (91.75%), Query Frame = 0
Query: 1 MDGGGNARVNSGATARGGGDGLPAIGIQIHSRRLPDFLQTVKLKYVKLGYHYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFAVLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDDSSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALDNLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGGMGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGAGKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFNPHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHVKASSNSPWDDCIDKYPVTVVS 521
MDGG +A+VN+ GG G + IQ H+RRLPDFLQ+V LKYVKLGYHYLIS+L TLCL+PV+I+ILIEASQMN DDIRQLWLHLQYNLV V++C AVLVFG T YIMTRPR VYLVDYACYR PD LKA RFM HSRLTGDFD+SSL FQR+ILERSGLGEETY PEAMH IPP+PSMAAAR EAE+VMYGALDNLFANT +K KDIGILVVNCSLFNPTPSLSAMI+NKYKLRGN+RSFNLGGMGCSAGVIA+D+AKDLLQVHRNTYAVVVSTENITQNWYFGN K+MLIPNCLFRVGGAAVLLSNKSAD+RRAKY LVHVVRTHRGADDKAFRCVYQE+D AGK GVSLSKDLMAIAGGALKTNITTLGP+VLPISEQLLFFATLLVKKFFN +VKPYIPDF+LAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRM LHRFGNTS+SSIWYELAYTEAKGR+RKGHRVWQIAFGSGFKCNSAVW+ALR++K S N PW+DCIDKYPV +V+
Sbjct: 2 MDGGADAQVNTAHGGVPGGGGAVGVQIQ-HTRRLPDFLQSVNLKYVKLGYHYLISHLLTLCLVPVMIVILIEASQMNPDDIRQLWLHLQYNLVSVIICSAVLVFGSTVYIMTRPRPVYLVDYACYRPPDTLKAPFHRFMEHSRLTGDFDESSLGFQRKILERSGLGEETYAPEAMHYIPPRPSMAAAREEAEQVMYGALDNLFANTSVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKSADRRRAKYMLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLLVKKFFNSNVKPYIPDFRLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGHRVWQIAFGSGFKCNSAVWKALRNMKPSRNGPWEDCIDKYPVKIVT 521
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7V5K5 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 925.62 bits (2391), Expect = 0.000e+0
Identity = 439/522 (84.10%), Postives = 478/522 (91.57%), Query Frame = 0
Match: A0A1U7V5K5 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 925.62 bits (2391), Expect = 0.000e+0
Identity = 439/522 (84.10%), Postives = 478/522 (91.57%), Query Frame = 0
Query: 1 MDGGGNARVNSGATARGGGDGLPAIGIQIH-SRRLPDFLQTVKLKYVKLGYHYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFAVLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDDSSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALDNLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGGMGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGAGKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFNPHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHVKASSNSPWDDCIDKYPVTVVS 521
MDGG A+VN TARGG + +G+QI SRRLPDFLQ+V LKYVKLGYHYLISNL TLCLIPV+ +ILIEASQMN DDIR LWLHL+YNLV V++C AVLVFG T YIMTRPR VYLVDY+CY+APD LKA ERFM+HSRLTGDFD+SSLEFQR+ILERSGLG+ETYVPEAMH +PPQPSM AAR EAE+VM+GALDNLFANT +K KDIGILVVNCSLFNPTPSLSAMI+NKYKLRGN+RSFNLGGMGCSAGVIA+D+AKD+LQVHRNTYAVVVSTENITQNWYFGN K+MLIPNCLFRVGGAAVLLSNKS D+RRAKYKLVHVVRTHRGADDKAFRCVYQE+D AGK GVSLSKDLMAIAGGALKTNITTLGP+VLPISEQLLFFATL++KK N HVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQL +HVEASRM LHRFGNTS+SSIWYELAYTEAKGR+RKG++VWQIAFGSGFKCNSAVWQALR+VK S N PW+DCID+YPV VVS
Sbjct: 1 MDGGAGAQVN---TARGGAE---PVGVQIQQSRRLPDFLQSVNLKYVKLGYHYLISNLLTLCLIPVMAVILIEASQMNPDDIRHLWLHLKYNLVSVIICSAVLVFGSTVYIMTRPRPVYLVDYSCYKAPDELKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHHLPPQPSMQAAREEAEQVMFGALDNLFANTSVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKSVDRRRAKYKLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLIIKKICNKHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLTQVHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGNKVWQIAFGSGFKCNSAVWQALRNVKPSQNGPWEDCIDRYPVKVVS 516
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EKL2 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 925.235 bits (2390), Expect = 0.000e+0
Identity = 437/521 (83.88%), Postives = 478/521 (91.75%), Query Frame = 0
Match: A0A7J0EKL2 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 925.235 bits (2390), Expect = 0.000e+0
Identity = 437/521 (83.88%), Postives = 478/521 (91.75%), Query Frame = 0
Query: 1 MDGGGNARVNSGATARGGGDGLPAIGIQIH-SRRLPDFLQTVKLKYVKLGYHYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFAVLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDDSSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALDNLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGGMGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGAGKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFNPHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHVKASSNSPWDDCIDKYPVTVV 520
MDGGG+A+VN+G G + +G+QIH SRRLPDFLQ+V LKYVKLGYHYL+SNL TLCLIP + +IL+EASQMN DDIRQLWLHLQYNLV V+VC AVLVFG T YIMTRPR VYLVDY+CYRAPD LKA ERFM HSRLTGDFD+SSLEFQR+ILERSGLGEETYVPEAMH IPP+PSMAAAR E+E+VM+GALD LF NT +K K+IGILVVNCSLFNPTPSLSAMI+NKYKLRGN+RSFNLGGMGCSAGVIAID+AK+LLQVHRNTYAVVVSTENITQNWYFGN K+MLIPNCLFRVGG+AVLLSNKSAD+R AKYKLVHVVRTH+GADDKAFRCVYQE+D AGK GVSLSKDLMAIAGGALKTNITTLGP+VLPISEQLLFFATL+VKK FN ++KPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRM LHRFGNTS+SSIWYELAYTEAKGR+RKGHRVWQIAFGSGFKCNSAVWQALR+VK S + PW+DCID YPV ++
Sbjct: 1 MDGGGDAQVNAG---HGSDSCVAEVGVQIHHSRRLPDFLQSVNLKYVKLGYHYLVSNLLTLCLIPTMAVILVEASQMNPDDIRQLWLHLQYNLVSVIVCSAVLVFGSTVYIMTRPRPVYLVDYSCYRAPDELKAPFERFMNHSRLTGDFDESSLEFQRKILERSGLGEETYVPEAMHFIPPRPSMAAAREESEKVMFGALDTLFVNTSVKPKNIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKELLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSADRRHAKYKLVHVVRTHKGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLVVKKLFNKNIKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGHRVWQIAFGSGFKCNSAVWQALRNVKPSHSGPWEDCIDNYPVKLL 518
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Z8C3 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 925.235 bits (2390), Expect = 0.000e+0
Identity = 438/522 (83.91%), Postives = 478/522 (91.57%), Query Frame = 0
Match: A0A1S3Z8C3 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 925.235 bits (2390), Expect = 0.000e+0
Identity = 438/522 (83.91%), Postives = 478/522 (91.57%), Query Frame = 0
Query: 1 MDGGGNARVNSGATARGGGDGLPAIGIQIH-SRRLPDFLQTVKLKYVKLGYHYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFAVLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDDSSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALDNLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGGMGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGAGKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFNPHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHVKASSNSPWDDCIDKYPVTVVS 521
MDGG A+VN TARGG + +G+QI SRRLPDFLQ+V LKYVKLGYHYLISNL TLCLIPV+ +ILIEASQMN DDIR LWLHL+YNLV V++C AVLVFG T YIMTRPR VYLVDY+CY+APD LKA ERFM+HSRLTGDFD+SSLEFQR+ILERSGLG+ETYVPEAMH +PPQPSM AAR EAE+VM+GALDNLFANT +K KDIG+LVVNCSLFNPTPSLSAMI+NKYKLRGN+RSFNLGGMGCSAGVIA+D+AKD+LQVHRNTYAVVVSTENITQNWYFGN K+MLIPNCLFRVGGAAVLLSNKS D+RRAKYKLVHVVRTHRGADDKAFRCVYQE+D AGK GVSLSKDLMAIAGGALKTNITTLGP+VLPISEQLLFFATL++KK N HVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQL +HVEASRM LHRFGNTS+SSIWYELAYTEAKGR+RKG++VWQIAFGSGFKCNSAVWQALR+VK S N PW+DCID+YPV VVS
Sbjct: 1 MDGGAGAQVN---TARGGAE---PVGVQIQQSRRLPDFLQSVNLKYVKLGYHYLISNLLTLCLIPVMAVILIEASQMNPDDIRHLWLHLKYNLVSVIICSAVLVFGSTVYIMTRPRPVYLVDYSCYKAPDELKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHHLPPQPSMQAARGEAEQVMFGALDNLFANTSVKPKDIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKSVDRRRAKYKLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLIIKKICNKHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLTQVHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGNKVWQIAFGSGFKCNSAVWQALRNVKPSQNGPWEDCIDRYPVKVVS 516
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5EDH1 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 922.154 bits (2382), Expect = 0.000e+0
Identity = 438/522 (83.91%), Postives = 475/522 (91.00%), Query Frame = 0
Match: A0A2P5EDH1 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 922.154 bits (2382), Expect = 0.000e+0
Identity = 438/522 (83.91%), Postives = 475/522 (91.00%), Query Frame = 0
Query: 1 MDGGGNARVNSGATARGGGDGLPAIGIQI-HSRRLPDFLQTVKLKYVKLGYHYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFAVLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDDSSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALDNLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGGMGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGAGKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFNPHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHVKASSNSPWDDCIDKYPVTVVS 521
M+ GG +V A GGDG A+G+QI +RRLPDFLQ+V LKYVKLGYHYLISNL TLC +P+I + LIEASQM+ D+RQLWLHLQYNLV V++C A LVFG T YIMTRPR VYLVDY+CYRAPDHLKA +RF+ HSRLTGDFD+SSLEFQR+ILERSGLGE+TYVPEAMH IPP+PSMAAAR EAE+VMYGALDNLFANT +K KDIGILVVNCSLFNPTPSLSAMI+NKYKLRGN+RSFNLGGMGCSAGVIAID+AKDLLQVHRNTYAVVVSTENITQNWYFGN K+MLIPNCLFRVGG+AVLLSNKS D+RRAKY+LVHVVRTHRGADDKAFRCVYQE+D AGK GVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFF TLLVKK N +VKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRM LHRFGNTS+SSIWYELAYTEAKGR+RKG+RVWQIAFGSGFKCNSAVW+ALR VK S N PW+DCIDKYPVTV+S
Sbjct: 1 MEPGGATQV-----ATAGGDG--AVGVQIRQTRRLPDFLQSVNLKYVKLGYHYLISNLLTLCFVPLIFVTLIEASQMDLGDLRQLWLHLQYNLVSVIICSAFLVFGLTVYIMTRPRPVYLVDYSCYRAPDHLKAPFDRFLEHSRLTGDFDESSLEFQRKILERSGLGEDTYVPEAMHFIPPRPSMAAAREEAEQVMYGALDNLFANTNVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDLLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSVDRRRAKYRLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFVTLLVKKLLNSNVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGNRVWQIAFGSGFKCNSAVWEALRSVKPSPNGPWEDCIDKYPVTVIS 515
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A590 (Very-long-chain 3-oxoacyl-CoA synthase {ECO:0000256|ARBA:ARBA00012307} (2.3.1.199 {ECO:0000256|ARBA:ARBA00012307}) (Fragment))
HSP 1 Score: 922.154 bits (2382), Expect = 0.000e+0
Identity = 443/521 (85.03%), Postives = 476/521 (91.36%), Query Frame = 0
Match: A0A5B7A590 (Very-long-chain 3-oxoacyl-CoA synthase {ECO:0000256|ARBA:ARBA00012307} (2.3.1.199 {ECO:0000256|ARBA:ARBA00012307}) (Fragment))
HSP 1 Score: 922.154 bits (2382), Expect = 0.000e+0
Identity = 443/521 (85.03%), Postives = 476/521 (91.36%), Query Frame = 0
Query: 1 MDGGGNARVNSGATARGGGDGLPAIGIQIHSRRLPDFLQTVKLKYVKLGYHYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFAVLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDDSSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALDNLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGGMGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGAGKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFNPHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHVKASSNSPWDDCIDKYPVTVVS 521
MDGG +A+VN+ GG G + IQ H+RRLPDFLQ+V LKYVKLGYHYLIS+L TLCL+PV+I+ILIEASQMN DDIRQLWLHLQYNLV V++C AVLVFG T YIMTRPR VYLVDYACYR PD LKA RFM HSRLTGDFD+SSL FQR+ILERSGLGEETY PEAMH IPP+PSMAAAR EAE+VMYGALDNLFANT +K KDIGILVVNCSLFNPTPSLSAMI+NKYKLRGN+RSFNLGGMGCSAGVIA+D+AKDLLQVHRNTYAVVVSTENITQNWYFGN K+MLIPNCLFRVGGAAVLLSNKSAD+RRAKY LVHVVRTHRGADDKAFRCVYQE+D AGK GVSLSKDLMAIAGGALKTNITTLGP+VLPISEQLLFFATLLVKK FN +VKPYIPDF LAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTS+SSIWYELAYTEAKGR+RKG RVWQIAFGSGFKCNSAVW+ALR+VK S + PW+DCIDKYPV VV+
Sbjct: 2 MDGGADAQVNTAHGGVPGGGGAVGVQIQ-HTRRLPDFLQSVNLKYVKLGYHYLISHLLTLCLVPVMIVILIEASQMNPDDIRQLWLHLQYNLVSVIICSAVLVFGSTVYIMTRPRPVYLVDYACYRPPDTLKAPFHRFMEHSRLTGDFDESSLGFQRKILERSGLGEETYAPEAMHYIPPRPSMAAAREEAEQVMYGALDNLFANTSVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKSADRRRAKYMLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLLVKKLFNANVKPYIPDFNLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSSSSIWYELAYTEAKGRMRKGXRVWQIAFGSGFKCNSAVWEALRNVKPSRDGPWEDCIDKYPVKVVT 521
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AEM2 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 920.998 bits (2379), Expect = 0.000e+0
Identity = 433/522 (82.95%), Postives = 480/522 (91.95%), Query Frame = 0
Match: A0A5J5AEM2 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 920.998 bits (2379), Expect = 0.000e+0
Identity = 433/522 (82.95%), Postives = 480/522 (91.95%), Query Frame = 0
Query: 1 MDGGGNARVNSGATARGGGDGLPAIGIQIH-SRRLPDFLQTVKLKYVKLGYHYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFAVLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDDSSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALDNLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGGMGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGAGKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFNPHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHVKASSNSPWDDCIDKYPVTVVS 521
MDGG +A+VN G+ A+G++IH +RRLPDFLQ+V LKYVKLGYHYLIS+L TLCL+P++I+ILIE SQMN DDIRQLWLHLQYNL+ V++C AVL FG T YIMTRPR +YLVDYACYRAPD+LKA RFM HSRLTGDFDDSSL+FQR+ILERSGLGEETYVPEAMH IPP+PSMAAAR EAE++M+GALDNLFANT +K K+IGILVVNCSLFNPTPSLSAMI+NKYKLRGN+RSFNLGGMGCSAGVIA+D+AKDLLQVHRNTYAVVVSTENITQNWYFGN K+MLIPNCLFRVGG+AVLLSNKSAD+RRAKY+LVH+VRTHRGAD+KAFRCVYQE+D AGK GVSLSKDLMAIAGGALKTNITTLGP+VLPISEQ+LFFATLLVKK N +VKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRM LHRFGNTS+SSIWYELAYTEAKGR+RKGHRVWQIAFGSGFKCNSAVW+ALR+VK S + PW+DCIDKYPV VV+
Sbjct: 1 MDGGADAQVNPAG-------GVGAVGVRIHHTRRLPDFLQSVNLKYVKLGYHYLISHLLTLCLVPLMIVILIEVSQMNPDDIRQLWLHLQYNLLSVIICSAVLAFGSTVYIMTRPRPIYLVDYACYRAPDNLKAPFHRFMEHSRLTGDFDDSSLQFQRKILERSGLGEETYVPEAMHYIPPRPSMAAAREEAEQIMFGALDNLFANTSVKPKNIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSADRRRAKYRLVHIVRTHRGADNKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQILFFATLLVKKLLNANVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGHRVWQIAFGSGFKCNSAVWEALRNVKPSRDGPWEDCIDKYPVKVVT 515
BLAST of DCAR_020976 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UUH0 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 920.998 bits (2379), Expect = 0.000e+0
Identity = 433/522 (82.95%), Postives = 474/522 (90.80%), Query Frame = 0
Match: A0A6P6UUH0 (3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} (2.3.1.- {ECO:0000256|PIRNR:PIRNR036417}))
HSP 1 Score: 920.998 bits (2379), Expect = 0.000e+0
Identity = 433/522 (82.95%), Postives = 474/522 (90.80%), Query Frame = 0
Query: 1 MDGGGNARVNSGATARGGGDGLPAIGIQIH-SRRLPDFLQTVKLKYVKLGYHYLISNLFTLCLIPVIIIILIEASQMNFDDIRQLWLHLQYNLVFVVVCFAVLVFGFTAYIMTRPRSVYLVDYACYRAPDHLKASNERFMRHSRLTGDFDDSSLEFQRRILERSGLGEETYVPEAMHVIPPQPSMAAARAEAEEVMYGALDNLFANTGIKAKDIGILVVNCSLFNPTPSLSAMIINKYKLRGNVRSFNLGGMGCSAGVIAIDMAKDLLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAVLLSNKSADKRRAKYKLVHVVRTHRGADDKAFRCVYQEEDGAGKIGVSLSKDLMAIAGGALKTNITTLGPIVLPISEQLLFFATLLVKKFFNPHVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPIHVEASRMALHRFGNTSASSIWYELAYTEAKGRIRKGHRVWQIAFGSGFKCNSAVWQALRHVKASSNSPWDDCIDKYPVTVVS 521
M+ GGNA ++ TAR +G+QI SRRLPDFLQ+V LKYVKLGYHYLIS+L TLCL+PV+IIILIEASQMN DDIRQLWLHLQYNLVFV+ C A+LVFG T YIMTRPR VYLVDY CYRAPD LKA E FM HSRLTGDFD+SSL+FQR+ILERSGLG+ETYVPEAMH +PP+PSM AAR EAE+VM+GA+DNLFANT +KAKDIGILVVNCSLFNPTPSLSAMI+NKYKLRGN+RSFNLGGMGCSAGVIA+D+AKDLLQVHRNTYAVVVSTENITQNWYFGN KAMLIPNCLFRVGGAAVLLSNKS D+RRAKY+LVHVVRTHRG+DDKAFRCVYQE+D AGK GV+LSKDLMAIAGGALKTNITTLGP+VLPISEQLLFFATL++KK F ++KPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLP HVEASRM LHRFGNTS+SSIWYELAYTEAKGRIR+G R+WQIAFGSGFKCNSAVWQALRHVK + N PW+DCID+YPV VV
Sbjct: 1 MEAGGNAPADTNPTARTSA----RVGVQIQQSRRLPDFLQSVNLKYVKLGYHYLISHLLTLCLVPVMIIILIEASQMNPDDIRQLWLHLQYNLVFVITCSAILVFGSTVYIMTRPRPVYLVDYFCYRAPDELKAPFESFMEHSRLTGDFDESSLQFQRKILERSGLGDETYVPEAMHFVPPRPSMQAAREEAEQVMFGAVDNLFANTNVKAKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQVHRNTYAVVVSTENITQNWYFGNKKAMLIPNCLFRVGGAAVLLSNKSVDRRRAKYRLVHVVRTHRGSDDKAFRCVYQEQDDAGKTGVTLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLVLKKLFQKNIKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRIRRGQRIWQIAFGSGFKCNSAVWQALRHVKPAPNGPWEDCIDRYPVKVVQ 518
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6RMT4 | E-Value: 0.000e+0, PID: 84.26 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR03... [more] |
| A0A1J6IGM5 | E-Value: 0.000e+0, PID: 84.10 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR03... [more] |
| A0A5B7A225 | E-Value: 0.000e+0, PID: 85.03 | Very-long-chain 3-oxoacyl-CoA synthase {ECO:000025... [more] |
| A0A1U7V5K5 | E-Value: 0.000e+0, PID: 84.10 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR03... [more] |
| A0A7J0EKL2 | E-Value: 0.000e+0, PID: 83.88 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR03... [more] |
| A0A1S3Z8C3 | E-Value: 0.000e+0, PID: 83.91 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR03... [more] |
| A0A2P5EDH1 | E-Value: 0.000e+0, PID: 83.91 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR03... [more] |
| A0A5B7A590 | E-Value: 0.000e+0, PID: 85.03 | Very-long-chain 3-oxoacyl-CoA synthase {ECO:000025... [more] |
| A0A5J5AEM2 | E-Value: 0.000e+0, PID: 82.95 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR03... [more] |
| A0A6P6UUH0 | E-Value: 0.000e+0, PID: 82.95 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR03... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |