DCAR_020922

Resource Type: 
Polypeptide
Name: 
DCAR_020922
Identifier: 
DCAR_020922.mRNA-protein
Sequence: 
MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQS
VTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDV
LNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSS
FGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYV
GVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVV
MRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSER
EVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITS
CKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRK
EERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAM
IAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPA
QQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGG
MLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAA
KVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGL
SLNENLVS*
Sequence Length: 
659
Sequence Checksum: 
fb6f45c0c6ab1e8a6e1cb3327b95942e
View location in JBrowse: 
DCARv2_Chr6:27297454..27302069-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_020922, derives from mRNA, DCAR_020922.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q9AT32 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))

HSP 1 Score: 1351.65 bits (3497), Expect = 0.000e+0
Identity = 658/658 (100.00%), Postives = 658/658 (100.00%), Query Frame = 0
 
Query:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGLSLNENLVS 658
            MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGLSLNENLVS
Sbjct:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGLSLNENLVS 658
[Close]
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AW99 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))

HSP 1 Score: 1065.45 bits (2754), Expect = 0.000e+0
Identity = 537/661 (81.24%), Postives = 592/661 (89.56%), Query Frame = 0
 
Query:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV---ADQLGGLSLNENLVS 658
            MAQIQVQ      Q PV+G NGV+A       G+NQF  TSLYVGDLD +VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA+D+LNFTPLN K+IRV  S RDP+ RKSG  NIFIKNLDK+ID KAL++TFSSFG I+SCKIA+D SG SKGYGFVQ+++EE+AQ AIDKLNGML+NDKQVYVG FLRKQ+R++ M+ TKFNN+YVKNLS+ST+E+DL+  FGEYGTITSVVVMRD DGKSKCFGFVNFEN +DAAKAV+ALNGKK DDKEWYVGKAQKKSERE+ELKS FEQ+ +E VDK+QGVNLYVKNLDD+IDD+KLKELFSE+GTITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGK+IVSKPLYVALAQRKEERRARLQAQFSQMRPVAM PS+ PRMPMY PGAPG+GQQLFYGQ PPA+I PQAGFGYQQQLVPGMRPGG PMPNFF+P+VQQGQQGQRPGGRRG GP QQTQQPVP+M QQ++PRGR+YR+PPGRNV DV MPGV GGML VPY+MGGMLPR+A MGQPMP+ ALA+ALANAP DQQRTMLGENLYP VDQLEH+HAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAM+VLRNV+Q  V   ADQL  LSLN+NLVS
Sbjct:    1 MAQIQVQ-----HQSPVTGPNGVAANP-----GANQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAMDLLNFTPLNGKSIRVMNSHRDPSIRKSGTANIFIKNLDKAIDNKALNDTFSSFGNILSCKIASDPSGLSKGYGFVQFENEESAQNAIDKLNGMLINDKQVYVGHFLRKQERETAMNYTKFNNVYVKNLSESTTEEDLKNIFGEYGTITSVVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKIDDKEWYVGKAQKKSERELELKSHFEQSAREAVDKFQGVNLYVKNLDDSIDDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKLIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPSIAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFLPLVQQGQQGQRPGGRRGPGPFQQTQQPVPLMQQQMLPRGRVYRYPPGRNVPDVPMPGVAGGMLSVPYDMGGMLPRDATMGQPMPVPALATALANAPPDQQRTMLGENLYPQVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQVSSPADQLASLSLNDNLVS 651
[Close]
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QY14 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))

HSP 1 Score: 1063.52 bits (2749), Expect = 0.000e+0
Identity = 525/664 (79.07%), Postives = 579/664 (87.20%), Query Frame = 0
 
Query:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMG---QPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPN---VADQLGGLSLNENLVS 658
            MAQIQVQ Q       VSG NG  A A      +NQF TTSLYVGDLD +VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RAI+VLNFTPLN K IR+  S RDP+ R+SGA NIFIKNLDK+ID KALH+TFSSFG I+SCKIATD S QSKGYGFVQ+D+EE+AQTAIDKLNGML+NDKQVYVG FLRKQ+RD+ M+KTKFNN+YVKNLS+STSE+DL K FGEYG +TSVVVMRD DGKSKCFGFVNFEN + AA AV+ALNGKK DDKEWYVGKAQKKSERE+ELKSRFEQ+ KE VDK+QG+NLYVKNLDD+IDD+KL+ELFSE+GT+TSCKVM DPSGISRGSGFVAF+TPEEASRAL EMNGKM+ +KPLYVALAQRKEERRARLQ QFSQMRPVAM P++ PRMPMY PG PG+GQQLFYGQAPPA+I PQAGFGYQQQLVPGMRPGG PMPNFFMPMVQQGQQG RPGGRRGAGP QQ QQP P+M QQ++PRGR YR+ PGRN+ DV +PGV GGML VPY+MGGML R++ M     PM + ALA++LANAP DQQRTMLGENLYPLVDQLEH+HAAKVTGMLLEMDQTEVLHLLESPDAL+AKV EAMDVLRNVSQ +    ADQL  LSLN+NLVS
Sbjct:    1 MAQIQVQHQSHV----VSGPNGGVAAAGGG---ANQFVTTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAIEVLNFTPLNGKVIRIMYSHRDPSIRRSGAANIFIKNLDKAIDNKALHDTFSSFGNILSCKIATDHSAQSKGYGFVQFDNEESAQTAIDKLNGMLINDKQVYVGQFLRKQERDTAMNKTKFNNVYVKNLSESTSEEDLNKIFGEYGILTSVVVMRDGDGKSKCFGFVNFENTDAAANAVEALNGKKIDDKEWYVGKAQKKSERELELKSRFEQSAKEVVDKFQGLNLYVKNLDDSIDDDKLRELFSEFGTVTSCKVMCDPSGISRGSGFVAFTTPEEASRALAEMNGKMVGNKPLYVALAQRKEERRARLQVQFSQMRPVAMAPALAPRMPMYHPGTPGLGQQLFYGQAPPAII-PQAGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGHRPGGRRGAGPVQQGQQPSPLMQQQMLPRGRGYRYSPGRNMQDVPIPGVAGGMLSVPYDMGGMLSRDSTMVPRLPPMAVPALATSLANAPPDQQRTMLGENLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALRAKVNEAMDVLRNVSQQHGNSPADQLASLSLNDNLVS 656
[Close]
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T2D6 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))

HSP 1 Score: 1062.75 bits (2747), Expect = 0.000e+0
Identity = 540/659 (81.94%), Postives = 595/659 (90.29%), Query Frame = 0
 
Query:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV-ADQLGGLSLNENLVS 658
            MAQIQVQ     Q +  +G NGV+A + A A  + QF +TSLYVGDLD +VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA++VLNFTPLNNK+IRV  S RDP+ RKSG  NIFIKNLDK+ID KALH+TFSSFG I+SCKIATD +GQSKGYGFVQ+DSE+AAQ+AIDKLNGML+NDKQVYVG FLRKQ+R++ + KTKFNN+YVKNL++ST++DDL+K FGEYG ITS VVMRDADGKSKCFGFVNFEN +DAAKAV+ALNGKK DDKEWYVGKAQKK ERE ELKSRFEQT +E VDK+QG+NLY+KNLDD+IDD+KLKELF+E+G ITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKM+VSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSM PRMPMY PGAPG+GQQLFYGQAPPA+I PQAGFGYQQQLVPGMRPGG PMPNFF+P+VQQGQQGQRPGGRRG GP QQ QQPVP+M QQ++PRGRMYRFPPGRNV DV +PGV GGML VPY+MGGMLPR+AA+ QPMPITALASALANA  +QQRTMLGENLYPLVDQLEH+HAAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMDVLRNV Q N  ADQL  LSLN+NLVS
Sbjct:    1 MAQIQVQ----HQNVAAAGPNGVAAPSGAAAAAAGQFMSTSLYVGDLDLNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALEVLNFTPLNNKSIRVMYSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSSFGNILSCKIATDPNGQSKGYGFVQFDSEDAAQSAIDKLNGMLINDKQVYVGHFLRKQERETALHKTKFNNVYVKNLAESTTDDDLKKIFGEYGAITSSVVMRDADGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKLEREQELKSRFEQTAREAVDKFQGLNLYIKNLDDSIDDDKLKELFTEFGNITSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMAPRMPMYPPGAPGIGQQLFYGQAPPAII-PQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGGGPVQQNQQPVPLMQQQMLPRGRMYRFPPGRNVPDVPIPGVAGGMLSVPYDMGGMLPRDAAIPQPMPITALASALANATPEQQRTMLGENLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVQQANSPADQLASLSLNDNLVS 654
[Close]
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SXT6 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))

HSP 1 Score: 1061.98 bits (2745), Expect = 0.000e+0
Identity = 539/659 (81.79%), Postives = 595/659 (90.29%), Query Frame = 0
 
Query:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV-ADQLGGLSLNENLVS 658
            MAQIQVQ     Q +  +G NGV+A   A A  + QF +TSLYVGDLD +VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA++VLNFTPLNNK+IRV  S RDP+ RKSG  NIFIKNLDK+ID KALH+TFSSFG I+SCKIATD +GQSKGYGFVQ+DS+EAAQ+AIDKLNGML+NDKQVYVG FLRKQ+R++ + KTKFNN+YVKNL++ST++DDL+K FGEYG ITS VVMRDADGKSKCFGFVNFEN +DAAKAV+ALNGKK DDKEWYVGKAQKKSERE ELK+RFEQT +E +DK+QG+NLY+KNLDD+IDD+KLKELF+E+GTITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKM+VSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSM PRMPMY PGAPG+GQQLFYGQAPPA+I PQ GFGYQQQLVPGMRPGG PMPNFF+P+VQQGQQGQRPGGRRG GP QQ QQPVP+M QQ++PRGRMYRFPPGRNV DV +PGV GGML VPY+MGGMLPR+AA+ QPMPITALASALANA  +QQRTMLGENLYPLVDQLEH+HAAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMDVLRNV Q N  ADQL  LSLN+NLVS
Sbjct:    1 MAQIQVQ----HQNVAAAGPNGVAAPGGAAAAAAGQFMSTSLYVGDLDLNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALEVLNFTPLNNKSIRVMYSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSSFGNILSCKIATDPNGQSKGYGFVQFDSDEAAQSAIDKLNGMLINDKQVYVGHFLRKQERETALHKTKFNNVYVKNLAESTTDDDLKKIFGEYGAITSSVVMRDADGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKNRFEQTAREAIDKFQGLNLYIKNLDDSIDDDKLKELFTEFGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMAPRMPMYPPGAPGIGQQLFYGQAPPAII-PQPGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGGGPVQQNQQPVPLMQQQMLPRGRMYRFPPGRNVPDVPIPGVAGGMLSVPYDMGGMLPRDAAVPQPMPITALASALANATPEQQRTMLGENLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVQQANSPADQLASLSLNDNLVS 654
[Close]
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5XRJ2 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))

HSP 1 Score: 1061.21 bits (2743), Expect = 0.000e+0
Identity = 521/662 (78.70%), Postives = 580/662 (87.61%), Query Frame = 0
 
Query:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGS-NQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV---ADQLGGLSLNENLVS 658
            MAQIQVQ      Q PV+G NGV    AANAGG+  QF +TSLYVGDLDQ+VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA+DVLNFTPLNNK+IR+  S RDP+ RKSG GNIFIKNLDK+ID KALH+TFSSFG I+SCKIATD +GQSKGYGFVQ+DSEEAAQ+AIDKLNGML+NDK V+VG FLRKQ+RD   +KTKFNN+YVKN+S+ST+EDDL+K FGE+G ITSVVVMRD DGKS+CFGFVNFE+P+ AAKAVD LNGKKFD+KEWYVGKAQKK ERE+ELK RFEQ++KE  DK+QGVNLY+KNLDD+I DEKLKELFSEYGT+TSCKVMRDP G SRGSGFVAFST EEASRAL EMNGKM+VSKPLYVALAQRKEERRARLQAQFSQMRPVAM PS+ PRMPMY PGAPG+GQQ  YGQAPP++I PQAGFGYQQQLVPG+RPGG PMPNFF+PMVQQG QGQRPGGRRGAGP QQ QQPVPMM Q ++PRGR+YR+PPGRN+ +V   GV  GML VPY+MGG+  R+AA GQ +P  ALA+ALANA  +QQRTMLGE LYPLVDQLEH+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+VLRNV+Q      ADQL  LSLN+NLVS
Sbjct:    1 MAQIQVQ-----HQPPVTGPNGV----AANAGGAPGQFVSTSLYVGDLDQNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKAIDHKALHDTFSSFGNILSCKIATDGTGQSKGYGFVQFDSEEAAQSAIDKLNGMLINDKPVFVGHFLRKQERDGAWNKTKFNNVYVKNISESTTEDDLKKIFGEHGQITSVVVMRDGDGKSRCFGFVNFEDPDAAAKAVDNLNGKKFDEKEWYVGKAQKKYERELELKERFEQSMKEASDKFQGVNLYIKNLDDSISDEKLKELFSEYGTVTSCKVMRDPDGNSRGSGFVAFSTTEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPSVAPRMPMYPPGAPGLGQQFLYGQAPPSIIPPQAGFGYQQQLVPGIRPGGAPMPNFFVPMVQQGPQGQRPGGRRGAGPVQQNQQPVPMMQQHMLPRGRVYRYPPGRNMQEVPFSGVPSGMLSVPYDMGGIPMRDAAGGQGVP--ALATALANASTEQQRTMLGEALYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQANSSADQLSSLSLNDNLVS 651
[Close]
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AVH5 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))

HSP 1 Score: 1055.82 bits (2729), Expect = 0.000e+0
Identity = 532/661 (80.48%), Postives = 587/661 (88.80%), Query Frame = 0
 
Query:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV---ADQLGGLSLNENLVS 658
            MAQIQVQ      Q  +SG NGV+A A        Q  +TSLYVGDLD +VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA+D+LNFTPLN K+IRV  S RDP+ RKSG  NIFIKNLDK+ID KAL++TFSSFG I+SCKIA+D SG SKGYGFVQ+++EE+AQ AIDKLNGML+NDKQVYVG FLRKQ+R++ M+ TKFNN+YVKNLS+ST+E+DL+  FGEYGTITSVVVMRD DGKSKCFGFVNFEN +DAAKAV+ALNGKK DDKEWYVGKAQKKSERE+ELKS FEQ+ +E VDK+QGVNLYVKNLDD+IDD+KLKELFSE+GTITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGK+IVSKPLYVALAQRKEERRARLQAQFSQMRPVAM PS+ PRMPMY PGAPG+GQQLFYGQ PPA+I PQAGFGYQQQLVPGMRPGG PMPNFF+P+VQQGQQGQRPGGRRG GP QQTQQPVP+M QQ++PRGR+YR+PPGRNV DV MPGV GGML VPY+MGGMLPR+A MGQPMP+ ALA+ALANAP DQQRTMLGENLYP VDQLEH+HAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAM+VLRNV+Q       DQL  LSLN+NLVS
Sbjct:    1 MAQIQVQ-----HQSSLSGPNGVAANA--------QLVSTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAMDLLNFTPLNGKSIRVMNSHRDPSIRKSGTANIFIKNLDKAIDNKALNDTFSSFGNILSCKIASDPSGLSKGYGFVQFENEESAQNAIDKLNGMLINDKQVYVGHFLRKQERETAMNYTKFNNVYVKNLSESTTEEDLKNIFGEYGTITSVVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKIDDKEWYVGKAQKKSERELELKSHFEQSAREAVDKFQGVNLYVKNLDDSIDDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKLIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPSIAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFLPLVQQGQQGQRPGGRRGPGPFQQTQQPVPLMQQQMLPRGRVYRYPPGRNVPDVPMPGVAGGMLSVPYDMGGMLPRDATMGQPMPVPALATALANAPPDQQRTMLGENLYPQVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQANSPTDQLASLSLNDNLVS 648
[Close]
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5T1N8 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))

HSP 1 Score: 1053.51 bits (2723), Expect = 0.000e+0
Identity = 517/662 (78.10%), Postives = 577/662 (87.16%), Query Frame = 0
 
Query:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGS-NQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV---ADQLGGLSLNENLVS 658
            MAQIQVQ      Q PV+  NGV    AANAGG+  QF +TSLYVGDLDQ+VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA+DVLNFTPLNNK+IR+  S RDP+ RKSG GNIFIKNLDK+ID KALH+TFSSFG I+SCKIATD +GQSKGYGFVQ+DSEEAAQ+AIDKLNGML+NDK V+VG FLRKQ+RD   +KTKFNN+YVKN+S+ST+EDDL+K FGE+G ITSVVVMRD DGKS+CFGFVNFE+P+ AAKAVD LNGKKFD+KEWYVGKAQKK ERE+ELK RFEQ++KE  DK+QGVNLY+KNLDD+I DEKLKELFS+YGT+TSCKVMRDP G SRGSGFVAFST EEASRAL EMNGKM+VSKPLYVALAQRKEERRARLQAQFSQMRPV M PS+ PRMPMY PGAPG+GQQ  YGQAPP++I PQAGFGYQQQLVPG+RPGG PMPNFF+PMVQQG QGQRPGGRRGAGP QQ QQPVPMM Q ++PRGR+YR+PPGRN+ +V   GV  GML VPY+MGG+  R+AA GQ +P  ALA+ALANA  +QQRTMLGE LYP VDQLEH+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+VLRNV+Q      ADQL  LSLN+NLVS
Sbjct:    1 MAQIQVQ-----HQPPVTAPNGV----AANAGGAPGQFVSTSLYVGDLDQNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKAIDHKALHDTFSSFGNILSCKIATDGTGQSKGYGFVQFDSEEAAQSAIDKLNGMLINDKPVFVGHFLRKQERDGAWNKTKFNNVYVKNISESTTEDDLKKIFGEHGQITSVVVMRDGDGKSRCFGFVNFEDPDAAAKAVDNLNGKKFDEKEWYVGKAQKKYERELELKERFEQSMKEASDKFQGVNLYIKNLDDSISDEKLKELFSDYGTVTSCKVMRDPDGNSRGSGFVAFSTTEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVTMAPSVAPRMPMYPPGAPGLGQQFLYGQAPPSIIPPQAGFGYQQQLVPGIRPGGAPMPNFFVPMVQQGPQGQRPGGRRGAGPVQQNQQPVPMMQQHMLPRGRVYRYPPGRNMQEVPFSGVPSGMLSVPYDMGGIPMRDAAGGQGVP--ALATALANASTEQQRTMLGEALYPQVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQANSSADQLSSLSLNDNLVS 651
[Close]
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A444YWA9 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))

HSP 1 Score: 1051.58 bits (2718), Expect = 0.000e+0
Identity = 522/666 (78.38%), Postives = 571/666 (85.74%), Query Frame = 0
 
Query:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAA-----ANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPP-GRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQP--NVADQLGGLSLNENLVS 658
            MAQIQVQ    Q  +     NGV+A  +       A G+NQF TTSLYVGDLD  V +  LYDLFNQVGQVVSVRVC DL+T RSLGYGYVNYSN QDA RAIDVLNFTPLNNK IR+  S RDP+ RKSG GNIFIKNLDK+ID KALH+TFSSFG I+SCKIATDASGQSKGYGFVQ+D+EE+AQ AIDKLNGML+NDKQVYVG FLRKQDRD+ + KT FNN+YVKNLS+S ++DDL+K FGEYGTITS VVMRDADG+SKCFGFVNFENPEDAAKAV++LNGKK DDKEWYVGKAQKKSERE EL+ RFEQ+VKE VDKYQGVNLY+KNLDDTI+DEKL+ELFSE+G+I SCKVMRDP+GISRGSGFVAFSTPEEASRAL EMNGKMI  KPLYVALAQRKEERRARLQAQFSQMRPVAM PS+ PRMP+Y PGAPG+GQQ  YGQ PPAMI PQAGFGYQQQLVPGMRPGG PMP+FF+PMV   QQGQRPGGRRGAGP QQ QQ VPMM QQL+PRGR  R+PP GRN+ DV +PGV GGML VPY++GG LP    +GQP+ I ALA+ALANAP +QQRTMLGE LYPLVDQLEHD AAKVTGMLLEMDQ EVLHL+ESPDALKAKVAEAMDVLRNVSQ     ADQL  LSLNENLVS
Sbjct:    1 MAQIQVQ---HQSAVSAPPQNGVAAAPSPPLPVGAANGTNQFVTTSLYVGDLDPEVDERHLYDLFNQVGQVVSVRVCSDLTTRRSLGYGYVNYSNPQDAARAIDVLNFTPLNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGQSKGYGFVQFDTEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNALGKTTFNNVYVKNLSESVTDDDLKKIFGEYGTITSAVVMRDADGRSKCFGFVNFENPEDAAKAVESLNGKKIDDKEWYVGKAQKKSERENELRRRFEQSVKESVDKYQGVNLYLKNLDDTINDEKLRELFSEFGSINSCKVMRDPNGISRGSGFVAFSTPEEASRALTEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAMTPSVAPRMPLYPPGAPGLGQQFMYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPSFFVPMV---QQGQRPGGRRGAGPVQQPQQTVPMMQQQLLPRGRYMRYPPGGRNMQDVPLPGVAGGMLSVPYDIGG-LPIRDGVGQPVGIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVSQQANTPADQLASLSLNENLVS 659
[Close]
BLAST of DCAR_020922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A445CXW8 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))

HSP 1 Score: 1047.34 bits (2707), Expect = 0.000e+0
Identity = 523/666 (78.53%), Postives = 571/666 (85.74%), Query Frame = 0
 
Query:    1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANA-----GGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPP-GRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVS-QPNV-ADQLGGLSLNENLVS 658
            MAQIQVQ    Q  +     NGV+A  +         G+NQF TTSLYVGDLD  V +  LYDLFNQVGQVVSVRVC DL+T RSLGYGYVNYSN QDA RAIDVLNFTPLNNK IR+  S RDP+ RKSG  NIFIKNLDK+ID KALH+TFSSFG I+SCKIATDASGQSKGYGFVQ+D+EE+AQ AIDKLNGML+NDKQVYVG FLRKQDRD+ + KT FNN+YVKNLS+S ++DDL+K FGEYGTITS VVMRDADGKSKCFGFVNFENPEDAAKAV++LNGKK DDKEWYVGKAQKKSERE EL+ RFEQTVKE VDKYQGVNLY+KNLDDTI+DEKL+ELFSE+G+ITSCKVMRDP+GISRGSGFV+FSTPEEASRAL EMNGKMI  KPLYVALAQRKEERRARLQAQFSQMRPVAM PS+ PRMP+Y PGAPG+GQQ  YGQ PPAMI PQAGFGYQQQLVPGMRPGG PMP+FF+PMV   QQGQRPGGRRGAGP QQ QQ VPMM QQL+PRGR  R+PP GRN+ DV +PGV GGML VPY++GG LP    +GQP+ I ALA+ALANAP +QQRTMLGE LYPLVDQLEHD AAKVTGMLLEMDQ EVLHL+ESPDALKAKVAEAMDVLRNVS Q N  ADQL  LSLNENLVS
Sbjct:    1 MAQIQVQ---HQSAVSAPPQNGVAAAPSPPLPAGAANGTNQFVTTSLYVGDLDPEVDERHLYDLFNQVGQVVSVRVCSDLTTRRSLGYGYVNYSNPQDAARAIDVLNFTPLNNKPIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGQSKGYGFVQFDTEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNALGKTTFNNVYVKNLSESVTDDDLKKIFGEYGTITSAVVMRDADGKSKCFGFVNFENPEDAAKAVESLNGKKIDDKEWYVGKAQKKSERENELRRRFEQTVKESVDKYQGVNLYLKNLDDTINDEKLRELFSEFGSITSCKVMRDPNGISRGSGFVSFSTPEEASRALTEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAMTPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPSFFVPMV---QQGQRPGGRRGAGPVQQPQQTVPMMQQQLLPRGRYMRYPPGGRNMQDVPLPGVAGGMLSVPYDIGG-LPIRDGVGQPVGIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVSQQANAPADQLASLSLNENLVS 659
Match NameStatsDescription
Q9AT32E-Value: 0.000e+0, PID: 100.00Polyadenylate-binding protein {ECO:0000256|RuleBas... [more]
A0A5B7AW99E-Value: 0.000e+0, PID: 81.24Polyadenylate-binding protein {ECO:0000256|RuleBas... [more]
A0A2R6QY14E-Value: 0.000e+0, PID: 79.07Polyadenylate-binding protein {ECO:0000256|RuleBas... [more]
A0A6I9T2D6E-Value: 0.000e+0, PID: 81.94Polyadenylate-binding protein {ECO:0000256|RuleBas... [more]
A0A6I9SXT6E-Value: 0.000e+0, PID: 81.79Polyadenylate-binding protein {ECO:0000256|RuleBas... [more]
M5XRJ2E-Value: 0.000e+0, PID: 78.70Polyadenylate-binding protein {ECO:0000256|RuleBas... [more]
A0A5B7AVH5E-Value: 0.000e+0, PID: 80.48Polyadenylate-binding protein {ECO:0000256|RuleBas... [more]
A0A6P5T1N8E-Value: 0.000e+0, PID: 78.10Polyadenylate-binding protein {ECO:0000256|RuleBas... [more]
A0A444YWA9E-Value: 0.000e+0, PID: 78.38Polyadenylate-binding protein {ECO:0000256|RuleBas... [more]
A0A445CXW8E-Value: 0.000e+0, PID: 78.53Polyadenylate-binding protein {ECO:0000256|RuleBas... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.