Resource Type:
Polypeptide
Name:
DCAR_023138
Identifier:
DCAR_023138.mRNA-protein
Sequence:
MGKITAAARGAQLPALSNLVRNQRQTPPAAAAAAKPEEDEKKKIWNSMIR
FPTPNLSDAKSIFNSLISNPNPNPSLLTPKFFNSILHSFASISTLDDSHA
FLNHMLKASPSFTPDRSTYHILLSHSPSSLPSVRKSLNLMLSHGAFIPDK
VTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRS
LTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQ
GFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYG
LSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLV
EMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYG
TFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQ
GLAV*
Sequence Length:
455
Sequence Checksum:
d93c27b1b5ba0169fd4444c8796d732b
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_023138, derives from mRNA, DCAR_023138. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KJ63 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:OIT28719.1}))
HSP 1 Score: 628.632 bits (1620), Expect = 0.000e+0
Identity = 307/424 (72.41%), Postives = 353/424 (83.25%), Query Frame = 0
Match: A0A314KJ63 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:OIT28719.1}))
HSP 1 Score: 628.632 bits (1620), Expect = 0.000e+0
Identity = 307/424 (72.41%), Postives = 353/424 (83.25%), Query Frame = 0
Query: 35 KPEEDEKKKIWNSMIRFPTPNLSDAKSIFNSLISNPNPNPSLLTPKFFNSILHSFASISTLDDSHAFLNHMLKASPSFTPDRSTYHILLSHS----PSSLPSVRKSLNLMLSHGAFIPDKVTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRSLTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQGFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYGLSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLVEMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYGTFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQGLAV 454
KP + ++ S++ F + LSDAK++FNSLISNP PS PKF+NSIL SF+S STL DS FLNHM+K P F+PDR TYH+LL S SL V + LNLM S+G F P+KV+TDIAVR LCSS+ E+A+ELVKELS K S PDTYTYNF+V+HLC++RSL+ +NSFI +MRD F +KPDLVTYTIMIDNVCN+KNLREATRLLGVLSE+G+KPDCYVYNT+MKGYCMLSQGGEVL VY KM EEGVKPDLVT+NTLIYGLSKSGRV+DAKKFLSVM E GH+PDAVTYTSLMNGMCREG+ LGAL LL ME +GC PNSCTYNTLLHGLCKARLLDKG+EL+ VMK MKLETGSYGTF+R+LCR G VAEAY+VFDYAVESKSLTDV+AY TLE+TLKWL KA+EQGL +
Sbjct: 55 KPTSNNQQPQLPSIVAFDSTTLSDAKTLFNSLISNPKNVPS--DPKFYNSILQSFSSNSTLQDSIFFLNHMIKTHPPFSPDRFTYHVLLIQSCKSVDHSLSPVHQVLNLMTSNG-FPPNKVSTDIAVRTLCSSNHEEQAIELVKELSSKDSPPDTYTYNFIVRHLCKNRSLSNMNSFIKEMRDGFDIKPDLVTYTIMIDNVCNSKNLREATRLLGVLSEEGYKPDCYVYNTIMKGYCMLSQGGEVLSVYKKMQEEGVKPDLVTYNTLIYGLSKSGRVKDAKKFLSVMMEEGHIPDAVTYTSLMNGMCREGDPLGALALLERMEARGCAPNSCTYNTLLHGLCKARLLDKGMELYDVMKKNGMKLETGSYGTFLRALCRNGRVAEAYEVFDYAVESKSLTDVAAYTTLESTLKWLKKAREQGLVI 475
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CSF5 ((pentatricopeptide repeat-containing protein At2g17670-like {ECO:0000313|RefSeq:XP_016504202.1, ECO:0000313|RefSeq:XP_016504203.1}))
HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 302/412 (73.30%), Postives = 348/412 (84.47%), Query Frame = 0
Match: A0A1S4CSF5 ((pentatricopeptide repeat-containing protein At2g17670-like {ECO:0000313|RefSeq:XP_016504202.1, ECO:0000313|RefSeq:XP_016504203.1}))
HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 302/412 (73.30%), Postives = 348/412 (84.47%), Query Frame = 0
Query: 47 SMIRFPTPNLSDAKSIFNSLISNPNPNPSLLTPKFFNSILHSFASISTLDDSHAFLNHMLKASPSFTPDRSTYHILLSHS----PSSLPSVRKSLNLMLSHGAFIPDKVTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRSLTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQGFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYGLSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLVEMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYGTFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQGLAV 454
S++ F + LSDAK++FNSLISNP PS PKF+NSIL SF+S STL DS FLNHM+K P+F+PDR TYH+LL S +SL V + LNLM S+G F P+KV+TDIAVR LCSS+ E+A+ELVKELS K S PDTYTYNF+V+HLC++RSL+ +NSFI +MR+ F +KPDLVTYTIMIDNVCN+KNLREATRLLGVLSE+G+KPDCYVYNT+MKGYCMLSQGGEVL VY KM EEGVKPDLVT+NTLIYGLSKSGRV+DAKKFLSVM E GH PDAVTYTSLMNGMCREG+ LGA+ LL ME +GC PNSCTYNTLLHGLCKARLLDKG+EL+ +MK MKLETGSYGTF+R+LCR G VAEAY VFDYAVESKSLTDV+AY TLE+TLKWL KA+EQGL +
Sbjct: 67 SIVAFDSTTLSDAKTLFNSLISNPKNVPS--DPKFYNSILQSFSSNSTLQDSIFFLNHMIKTHPTFSPDRFTYHVLLIQSCKSVDNSLSPVHQVLNLMTSNG-FPPNKVSTDIAVRTLCSSNHEEQAIELVKELSSKDSPPDTYTYNFIVRHLCKNRSLSSMNSFIKEMREGFDIKPDLVTYTIMIDNVCNSKNLREATRLLGVLSEEGYKPDCYVYNTIMKGYCMLSQGGEVLSVYKKMQEEGVKPDLVTYNTLIYGLSKSGRVKDAKKFLSVMMEEGHNPDAVTYTSLMNGMCREGDPLGAVALLERMEARGCAPNSCTYNTLLHGLCKARLLDKGMELYDIMKKNGMKLETGSYGTFLRALCRNGRVAEAYDVFDYAVESKSLTDVAAYTTLESTLKWLKKAREQGLVI 475
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WZM2 ((pentatricopeptide repeat-containing protein At2g17670 {ECO:0000313|RefSeq:XP_009785352.1}))
HSP 1 Score: 620.928 bits (1600), Expect = 0.000e+0
Identity = 313/479 (65.34%), Postives = 371/479 (77.45%), Query Frame = 0
Match: A0A1U7WZM2 ((pentatricopeptide repeat-containing protein At2g17670 {ECO:0000313|RefSeq:XP_009785352.1}))
HSP 1 Score: 620.928 bits (1600), Expect = 0.000e+0
Identity = 313/479 (65.34%), Postives = 371/479 (77.45%), Query Frame = 0
Query: 1 MGKITAAARGAQLPALSNLVR-------NQRQTPPAAAAAAKPE--------------EDEKKKIWNSMIRFPTPNLSDAKSIFNSLISNPNPNPSLLTPKFFNSILHSFASISTLDDSHAFLNHMLKASPSFTPDRSTYHILLSHS----PSSLPSVRKSLNLMLSHGAFIPDKVTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRSLTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQGFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYGLSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLVEMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYGTFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQGLAV 454
MGK+ + R A A++ L++ +Q+ P+ +KP ++ S++ F + LSDAK++FNSLISNP PS KF+NSIL SF+S STL DS FLNHM+K P F+PDR TYH+LL S +SL V + LNLM S+G F P+KV+TDIAVR LCSS+ E+A+ELVKELS K S PDTYTYNF+V+HLC++RSL+ +NSFI +MR+ F +KPDLVTYTIMIDNVCN+KNLREATRLLGVLSE+G+KPDCYV+NT+MKGYCMLSQGGEVL VY KM EEGVKPDLVT+NTLIYGLSKSGRV+DAKKFLSVM E GH+PDAVTYTSLMNGMCREG+ LGAL LL ME +GC PNSCTYNTLLHGLCKARLLDKG+EL+ VMK MKLETGSYGTF+R+LCR G VAEAY+VFDYAVESKSLTDV+AY TLE+TLKWL KA+EQGL +
Sbjct: 1 MGKLPPSLRSANF-AVNTLIKTPSSSVPHQKIPSPSQPPTSKPHYFPKKSHSPKKKPTSITQQPQLPSIVAFDSTTLSDAKTLFNSLISNPQNVPS--DTKFYNSILQSFSSNSTLQDSIFFLNHMIKTHPPFSPDRYTYHVLLIQSCKSVDNSLSPVHQVLNLMTSNG-FPPNKVSTDIAVRTLCSSNREEQAIELVKELSSKDSPPDTYTYNFIVRHLCKNRSLSNMNSFIKEMREGFDIKPDLVTYTIMIDNVCNSKNLREATRLLGVLSEEGYKPDCYVFNTIMKGYCMLSQGGEVLSVYKKMQEEGVKPDLVTYNTLIYGLSKSGRVKDAKKFLSVMMEEGHIPDAVTYTSLMNGMCREGDPLGALALLERMEARGCAPNSCTYNTLLHGLCKARLLDKGMELYDVMKKNGMKLETGSYGTFLRALCRNGRVAEAYEVFDYAVESKSLTDVAAYTTLESTLKWLKKAREQGLVI 475
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3X3P0 ((pentatricopeptide repeat-containing protein At2g17670-like {ECO:0000313|RefSeq:XP_016434605.1}))
HSP 1 Score: 620.928 bits (1600), Expect = 0.000e+0
Identity = 313/479 (65.34%), Postives = 371/479 (77.45%), Query Frame = 0
Match: A0A1S3X3P0 ((pentatricopeptide repeat-containing protein At2g17670-like {ECO:0000313|RefSeq:XP_016434605.1}))
HSP 1 Score: 620.928 bits (1600), Expect = 0.000e+0
Identity = 313/479 (65.34%), Postives = 371/479 (77.45%), Query Frame = 0
Query: 1 MGKITAAARGAQLPALSNLVR-------NQRQTPPAAAAAAKPE--------------EDEKKKIWNSMIRFPTPNLSDAKSIFNSLISNPNPNPSLLTPKFFNSILHSFASISTLDDSHAFLNHMLKASPSFTPDRSTYHILLSHS----PSSLPSVRKSLNLMLSHGAFIPDKVTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRSLTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQGFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYGLSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLVEMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYGTFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQGLAV 454
MGK+ + R A A++ L++ +Q+ P+ +KP ++ S++ F + LSDAK++FNSLISNP PS KF+NSIL SF+S STL DS FLNHM+K P F+PDR TYH+LL S +SL V + LNLM S+G F P+KV+TDIAVR LCSS+ E+A+ELVKELS K S PDTYTYNF+V+HLC++RSL+ +NSFI +MR+ F +KPDLVTYTIMIDNVCN+KNLREATRLLGVLSE+G+KPDCYV+NT+MKGYCMLSQGGEVL VY KM EEGVKPDLVT+NTLIYGLSKSGRV+DAKKFLSVM E GH+PDAVTYTSLMNGMCREG+ LGAL LL ME +GC PNSCTYNTLLHGLCKARLLDKG+EL+ VMK MKLETGSYGTF+R+LCR G VAEAY+VFDYAVESKSLTDV+AY TLE+TLKWL KA+EQGL +
Sbjct: 1 MGKLPPSLRSANF-AVNTLIKTPSSSVPHQKIPSPSQPPTSKPHYFPKKSHSPKKKPTSITQQPQLPSIVAFDSTTLSDAKTLFNSLISNPQNVPS--DTKFYNSILQSFSSNSTLQDSIFFLNHMIKTHPPFSPDRYTYHVLLIQSCKSVDNSLSPVHQVLNLMTSNG-FPPNKVSTDIAVRTLCSSNREEQAIELVKELSSKDSPPDTYTYNFIVRHLCKNRSLSNMNSFIKEMREGFDIKPDLVTYTIMIDNVCNSKNLREATRLLGVLSEEGYKPDCYVFNTIMKGYCMLSQGGEVLSVYKKMQEEGVKPDLVTYNTLIYGLSKSGRVKDAKKFLSVMMEEGHIPDAVTYTSLMNGMCREGDPLGALALLERMEARGCAPNSCTYNTLLHGLCKARLLDKGMELYDVMKKNGMKLETGSYGTFLRALCRNGRVAEAYEVFDYAVESKSLTDVAAYTTLESTLKWLKKAREQGLVI 475
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AY33 ((Uncharacterized protein {ECO:0000313|EMBL:MPA61559.1}) (Fragment))
HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0
Identity = 306/480 (63.75%), Postives = 373/480 (77.71%), Query Frame = 0
Match: A0A5B7AY33 ((Uncharacterized protein {ECO:0000313|EMBL:MPA61559.1}) (Fragment))
HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0
Identity = 306/480 (63.75%), Postives = 373/480 (77.71%), Query Frame = 0
Query: 1 MGKITAAARGAQLPALSNLVRNQRQTPPAAAAAAKPEEDEK-----------------KKIWNSMIRFPTPNLSDAKSIFNSLISNPNPN----PSLLTPKFFNSILHSFASISTLDDSHAFLNHMLKASPSFTPDRSTYHILLSHS-----PSSLPSVRKSLNLMLSHGAFIPDKVTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRSLTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQGFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYGLSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLVEMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYGTFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQGLAV 454
MGKI + R A+ P ++ L++N P ++ P +K + + I F +PNLS+AK++FNSLI++ + P L KFFNS+L SFA+ISTL+DS + L HM+K P F+PDRSTYH LLS S SL SVR+ LNLM + G F PDKVTTDIA+R LCS E+A+EL+KE SLK+S PDTYTYNF+V+HLC+ R+L+ +NSFI +MR+SF +KPDL+TYTIMIDNVCN+KNLREATRLLGVL+E+GFKPD YVYNT+MKGYCMLSQG EV+ VY KM EEGV+PDLVT+NTLI+GLSKSGRV++A+KFL+VM E GH PDAVTYTSLMNGMCREGNALGAL LL EME KGC+PNSCTYNTLLHGLCKA+LL+KG+EL+ VMK M+LETGSYGTF+R+LCR G +AEAY+VFDYAVESKSL DV+AY+TLE+TLKWL KAKEQGLA+
Sbjct: 20 MGKIPPSLRTARFP-VTTLLKNPPSVLPEQQQSSTPTPSQKPHHFPKKPSKKKPPKPLQTLKTPTITFNSPNLSNAKTLFNSLITSSSATATAPPEL---KFFNSLLQSFAAISTLNDSISLLRHMIKTHPPFSPDRSTYHTLLSQSCKSPDDPSLSSVRQVLNLMATDG-FPPDKVTTDIAIRTLCSVGREEDAIELIKEFSLKNSPPDTYTYNFIVRHLCKTRALSAVNSFIKEMRESFEIKPDLITYTIMIDNVCNSKNLREATRLLGVLAEEGFKPDRYVYNTIMKGYCMLSQGSEVVWVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLNVMAEMGHFPDAVTYTSLMNGMCREGNALGALELLEEMEAKGCSPNSCTYNTLLHGLCKAKLLEKGIELYGVMKDGGMQLETGSYGTFLRALCRNGRIAEAYEVFDYAVESKSLKDVAAYSTLESTLKWLKKAKEQGLAI 494
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C070 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547570.1}))
HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 303/478 (63.39%), Postives = 371/478 (77.62%), Query Frame = 0
Match: A0A5J5C070 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547570.1}))
HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 303/478 (63.39%), Postives = 371/478 (77.62%), Query Frame = 0
Query: 1 MGKITAAARGAQLPALSNLVRNQRQTPPAAAAAAKPEEDEK--------------------KKIWNSMIRFPTPNLSDAKSIFNSLISNPNPNPSLLTPKFFNSILHSFASISTLDDSHAFLNHMLKASPSFTPDRSTYHILLSHS----PSSLPSVRKSLNLMLSHGAFIPDKVTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRSLTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQGFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYGLSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLVEMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYGTFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQGLAV 454
MGKI A R A+ P ++ L++N P ++ P +K + + + +I F +PNLS+AK++FNSLIS+ P L KFFNS L SFA++STL+DS + L HM+ P F+PDRSTYHILLS S SSL SVR++L LM++ G F PDKVTTDIA+R LCS ++A+EL+KELS HS PDTYTYNFL++HLC+ R+L+ +N+FI +MRDSF +KPDLVTYTIMIDNVCN+KNLREATRLLGVL+E GFKPD YVYNT+MKGYCMLS+G EVL VY KM EEGV+PD+VT+NTLI+GLSKSGRV++A+KFL VM E GH PDA+TYTS+MNGMCREGNALGAL LLVEME KGC+PNSCTYNTLLHGLCK++LL+KG+EL+ VMKA M+LET SYGTFVR+LCR G +AEAY+VFDYA+ESKSL V+AY TLE+TLKWL KAKEQGLA+
Sbjct: 1 MGKIPPAFRTARFP-VTTLLKNPPSVLPQQQQSSTPPPSQKPHHFPKKSSKKKHPKSSATTQALKSPIITFNSPNLSEAKTLFNSLISSSTTAPVDL--KFFNSFLQSFATVSTLNDSISLLRHMINTHPPFSPDRSTYHILLSQSCKSPDSSLSSVRQALKLMVTDG-FPPDKVTTDIAIRTLCSVGREDDAIELIKELSHNHSPPDTYTYNFLIRHLCKTRALSTVNNFIKEMRDSFEIKPDLVTYTIMIDNVCNSKNLREATRLLGVLAEGGFKPDRYVYNTLMKGYCMLSEGSEVLWVYKKMKEEGVEPDIVTYNTLIFGLSKSGRVKEARKFLDVMAEMGHFPDAITYTSMMNGMCREGNALGALELLVEMEAKGCSPNSCTYNTLLHGLCKSKLLEKGIELYGVMKAGGMQLETDSYGTFVRALCRNGRIAEAYEVFDYAIESKSLKHVAAYMTLESTLKWLKKAKEQGLAI 474
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2XFX3 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PHT56402.1}))
HSP 1 Score: 604.364 bits (1557), Expect = 0.000e+0
Identity = 294/419 (70.17%), Postives = 348/419 (83.05%), Query Frame = 0
Match: A0A2G2XFX3 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PHT56402.1}))
HSP 1 Score: 604.364 bits (1557), Expect = 0.000e+0
Identity = 294/419 (70.17%), Postives = 348/419 (83.05%), Query Frame = 0
Query: 40 EKKKIWNSMIRFPTPNLSDAKSIFNSLISNPNPNPSLLTPKFFNSILHSFASISTLDDSHAFLNHMLKASPSFTPDRSTYHILLSHSPSS----LPSVRKSLNLMLSHGAFIPDKVTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRSLTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQGFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYGLSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLVEMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYGTFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQGLAV 454
E+ ++ + + F + LSDAK++FNSLISN PS KF+N+IL SF+S S+L DS FLNHM+K P+F+PDR TYH+LL S S L V + LNLM S+G F P+KV+TDIAVR LCSS E+A+ELVKELS K S PDTYTYNF+V+HLC++R L+ +NSFI +MR+ F +KPDLVTYTIMIDNVCN+KNLREATRLLGVLSE+G+KPDCYVYNT+MKGYCMLSQGGEVL VY KM EEGVKPDLVT+NTLIYGLSKSGRV+DAKKFL+VM E GH+PDAVTYTSLMNGMCREG+ LGA+ LL +ME +GC PNSCTYNTLLHGLCKARLLDKG++L+ VMK KLETGSYGTF+R+LCR G VAEAY+VFDYA+ESKSLTDV+AY TLE+TLKWL KA+EQGL +
Sbjct: 53 EEPQLPSIITAFDSTTLSDAKTLFNSLISNTKNQPSS-DNKFYNAILQSFSSNSSLQDSIFFLNHMIKIHPAFSPDRFTYHVLLIQSCKSVGLSLSPVHQVLNLMTSNG-FPPNKVSTDIAVRTLCSSGREEQAIELVKELSSKDSPPDTYTYNFIVRHLCKNRPLSTMNSFIKEMREGFDIKPDLVTYTIMIDNVCNSKNLREATRLLGVLSEEGYKPDCYVYNTIMKGYCMLSQGGEVLGVYKKMQEEGVKPDLVTYNTLIYGLSKSGRVKDAKKFLNVMMEQGHVPDAVTYTSLMNGMCREGDPLGAVALLEKMEAQGCAPNSCTYNTLLHGLCKARLLDKGMKLYDVMKQNGTKLETGSYGTFLRALCRNGRVAEAYEVFDYAIESKSLTDVAAYTTLESTLKWLNKAREQGLVI 469
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8FVE1 ((pentatricopeptide repeat-containing protein At2g17670 {ECO:0000313|RefSeq:XP_016560403.1}))
HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0
Identity = 292/419 (69.69%), Postives = 347/419 (82.82%), Query Frame = 0
Match: A0A1U8FVE1 ((pentatricopeptide repeat-containing protein At2g17670 {ECO:0000313|RefSeq:XP_016560403.1}))
HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0
Identity = 292/419 (69.69%), Postives = 347/419 (82.82%), Query Frame = 0
Query: 40 EKKKIWNSMIRFPTPNLSDAKSIFNSLISNPNPNPSLLTPKFFNSILHSFASISTLDDSHAFLNHMLKASPSFTPDRSTYHILLSHSPSS----LPSVRKSLNLMLSHGAFIPDKVTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRSLTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQGFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYGLSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLVEMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYGTFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQGLAV 454
E+ ++ + + F + LSDAK++FNSLISN P KF+N+IL SF+S S+L DS FLNHM+K P+F+PDR TYH+LL S S L V + LNLM S+G F P+KV+TDIAVR LCSS E+A+ELVKELS K S PD YTYNF+V+HLC++R L+ +NSFI +MR+ F +KPDLVTYTIMIDNVCN+KNLREATRLLGVLSE+G+KPDCYVYNT+MKGYCMLSQGGEVLRVY KM EEGVKPDLVT+NTLIYGLSKSGRV+DAKKFL+VM E GH+PDAVTYTSLMNGMCREG+ LGA+ LL +ME +GC PNSCTYNTLLHGLCKARLLDKG++L+ VMK KLETGSYGTF+R+LCR G VAEAY+VFDYA+ESKSL+DV+AY TLE+TLKWL KA+EQGL +
Sbjct: 59 EEPQLPSIITAFDSTTLSDAKTLFNSLISNTKNQPPS-DNKFYNAILQSFSSNSSLQDSIFFLNHMIKIHPTFSPDRFTYHVLLIQSCKSVGLSLSPVHQVLNLMTSNG-FPPNKVSTDIAVRTLCSSGCEEQAIELVKELSSKDSPPDMYTYNFIVRHLCKNRPLSTMNSFIKEMREGFDIKPDLVTYTIMIDNVCNSKNLREATRLLGVLSEEGYKPDCYVYNTIMKGYCMLSQGGEVLRVYKKMQEEGVKPDLVTYNTLIYGLSKSGRVKDAKKFLNVMMEQGHVPDAVTYTSLMNGMCREGDPLGAVALLEKMEAQGCAPNSCTYNTLLHGLCKARLLDKGMKLYDVMKQNGTKLETGSYGTFLRALCRNGRVAEAYEVFDYAIESKSLSDVAAYTTLESTLKWLNKAREQGLVI 475
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GF88 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFZ09431.1}))
HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0
Identity = 301/473 (63.64%), Postives = 361/473 (76.32%), Query Frame = 0
Match: A0A7J0GF88 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFZ09431.1}))
HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0
Identity = 301/473 (63.64%), Postives = 361/473 (76.32%), Query Frame = 0
Query: 1 MGKITAAARGAQLPALSNLVRNQ---------------RQTPPAAAAAAKPEEDEKKKIWNSMIRFPTPNLSDAKSIFNSLISNPNPNPSLLTPKFFNSILHSFASISTLDDSHAFLNHMLKASPSFTPDRSTYHILLSHS----PSSLPSVRKSLNLMLSHGAFIPDKVTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRSLTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQGFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYGLSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLVEMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYGTFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQGLAV 454
MGK+ A R A +S+++RN+ R P P+ K I F +PNLS AKS+FNSLIS+ + L +F NS+L S+AS STLDDS + L +M+K P+F+PD STYH+LLS S SSL SVRK L+LM + G F PDK TDIA+R LC++ ++ AVELVKEL LKHS PD+YTYNFL+KHLCR+R+L+ +N+FI +MR+ F +KPDL+ YTI+IDNVCN KNLREATRLL +LSE GFKPDCYVYNT+MKGYCMLSQG EVL VY KM EEGV+PDLVT+NTL++GLSKSGRV++AKKFL VM E GH PD VTYTSLMNGMCREGNALGAL LL EME KGC+PNSCTYNTLLHGLCKA+LLD+ +EL+ VMKA++M+LE GSYGTF+R+LCR G VAEAY+VFDYAVESKSL D +AY+TLE TLKWL KAKEQGLAV
Sbjct: 1 MGKLPPAVRAAPF-QVSSVLRNRPSLLPEQPEAEPSQPRHFPKKFPGKKSPKTLTAKNPKLPAITFTSPNLSAAKSLFNSLISSTSAAADGL--RFHNSLLQSYASTSTLDDSISLLKYMIKTHPTFSPDWSTYHVLLSQSCKSDDSSLSSVRKILDLMATDG-FTPDKAATDIAIRTLCNNGRVDHAVELVKELCLKHSPPDSYTYNFLIKHLCRNRTLSTVNNFIKEMRECFEIKPDLIAYTILIDNVCNRKNLREATRLLQLLSEDGFKPDCYVYNTIMKGYCMLSQGSEVLWVYKKMKEEGVEPDLVTYNTLVFGLSKSGRVKEAKKFLGVMAEMGHFPDEVTYTSLMNGMCREGNALGALQLLEEMEAKGCSPNSCTYNTLLHGLCKAKLLDRAIELYSVMKASDMQLEPGSYGTFLRALCRNGRVAEAYEVFDYAVESKSLKDFAAYSTLETTLKWLKKAKEQGLAV 469
BLAST of DCAR_023138 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q204 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS00429.1}))
HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0
Identity = 300/473 (63.42%), Postives = 361/473 (76.32%), Query Frame = 0
Match: A0A2R6Q204 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS00429.1}))
HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0
Identity = 300/473 (63.42%), Postives = 361/473 (76.32%), Query Frame = 0
Query: 1 MGKITAAARGAQLPALSNLVRNQRQTPPAAAAAAKPEEDEKKKIWNS---------------MIRFPTPNLSDAKSIFNSLISNPNPNPSLLTPKFFNSILHSFASISTLDDSHAFLNHMLKASPSFTPDRSTYHILLSHS----PSSLPSVRKSLNLMLSHGAFIPDKVTTDIAVRALCSSSLIEEAVELVKELSLKHSAPDTYTYNFLVKHLCRHRSLTMLNSFINDMRDSFGVKPDLVTYTIMIDNVCNTKNLREATRLLGVLSEQGFKPDCYVYNTVMKGYCMLSQGGEVLRVYNKMLEEGVKPDLVTFNTLIYGLSKSGRVRDAKKFLSVMTEAGHMPDAVTYTSLMNGMCREGNALGALNLLVEMERKGCTPNSCTYNTLLHGLCKARLLDKGVELFRVMKAAEMKLETGSYGTFVRSLCRKGMVAEAYQVFDYAVESKSLTDVSAYATLEATLKWLAKAKEQGLAV 454
MGK+ A R A +S+++RN+ P A P+ K + I F +PNLS AKS+FNSLIS+ + L +F NS+L S+A+ STLDDS + L +M+K P+F+PD STYH+LLS S SSL SVRK L+LM + G F PDK TTDIA+R LC++ ++ AVELVKEL LKHS PD+YTYNFL+KHLCR+R+L+ +N+FI +MR+ F +KPDL+ YTI+IDNVCN KNLREATRLL +LSE GFKPDCYVYNT+MKGYCMLSQG EVL VY KM EEGV PDLVT+NTL++GLSKSGRV++AKKFL VM E GH PD VTYTSLMNGMCREGNALGAL LL EME KGC+PNSCTYNTLLHGLCKA+LLD+ +EL+ VMKA++M+LE GSYGT +R+LCR G VAEAY+VFDYAVESKSL D +AY+TLE TLKWL KAKEQGLAV
Sbjct: 1 MGKLPPAVRAAPF-QVSSVLRNRPSLLPEQPEAETPQPRHFPKKFPGKKSPKTLTAQNPKLPAITFTSPNLSAAKSLFNSLISSTSAAADGL--RFHNSLLQSYAATSTLDDSISLLKYMIKTHPTFSPDWSTYHVLLSQSCKSDDSSLSSVRKILDLMATDG-FTPDKATTDIAIRTLCNNGRVDHAVELVKELCLKHSPPDSYTYNFLIKHLCRNRTLSTVNNFIKEMRECFEIKPDLIAYTILIDNVCNRKNLREATRLLQLLSEDGFKPDCYVYNTIMKGYCMLSQGSEVLWVYKKMKEEGVDPDLVTYNTLVFGLSKSGRVKEAKKFLGVMAEMGHFPDEVTYTSLMNGMCREGNALGALQLLEEMEAKGCSPNSCTYNTLLHGLCKAKLLDRAIELYSVMKASDMQLEPGSYGTVLRALCRNGRVAEAYEVFDYAVESKSLKDFAAYSTLETTLKWLKKAKEQGLAV 469
| Match Name | Stats | Description |
|---|---|---|
| A0A314KJ63 | E-Value: 0.000e+0, PID: 72.41 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A1S4CSF5 | E-Value: 0.000e+0, PID: 73.30 | (pentatricopeptide repeat-containing protein At2g1... [more] |
| A0A1U7WZM2 | E-Value: 0.000e+0, PID: 65.34 | (pentatricopeptide repeat-containing protein At2g1... [more] |
| A0A1S3X3P0 | E-Value: 0.000e+0, PID: 65.34 | (pentatricopeptide repeat-containing protein At2g1... [more] |
| A0A5B7AY33 | E-Value: 0.000e+0, PID: 63.75 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6155... [more] |
| A0A5J5C070 | E-Value: 0.000e+0, PID: 63.39 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8547... [more] |
| A0A2G2XFX3 | E-Value: 0.000e+0, PID: 70.17 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A1U8FVE1 | E-Value: 0.000e+0, PID: 69.69 | (pentatricopeptide repeat-containing protein At2g1... [more] |
| A0A7J0GF88 | E-Value: 0.000e+0, PID: 63.64 | (Tetratricopeptide repeat (TPR)-like superfamily p... [more] |
| A0A2R6Q204 | E-Value: 0.000e+0, PID: 63.42 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |