MEENDDNLSNKSRLIDIDDTVDTLEPKECDVAGEKSSDFECVGREIEEAE
ASIPVTESENLSENCVELEIDGKFSDGVEVEAGELERKDELSGEIEVSGV
GVDASGIEVRDDKDDEIEGEVLYDTVRGDDKNDELEGEVVAEKKDELQGN
YGCQVAKEGEVEGNGVDEGEILGDNDQVEDKDVCEDGFDDKQNVCVQVVA
EKKDELEVEGGMNVGEEAGDKVVPESEIKDEAGVELQAGAVCEEVKAEEL
KGDCGTEVVGEALCEVGNEAENKSEIETEMKVSREPVKNVDDMVEEEKVE
MGYVSSQSLNEVEERAANIEDNAEHSSGLIGLAEDTVMEEKNLVMESVNK
KRDDELDSAPESDDEEDIMETGREYDEDKFEGEVPQPDGDSQLAEDEEDI
METEREFDEDKFEGEVPQPDGDSQLAEDEEDERLVGDEEIPAADVEMETE
TDAGELVKISGGKRKRGKNTKAAGKAQPLNMVGLPVEEEDVCFVCFDGGD
LVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCGCIKDAVILCVRGNKGF
CEACIKIVMMIEDNAQGSQAQIDFDDKSSWEYLFKDYWIDLKESLSISPV
EIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKK
RKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMR
DGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVG
HFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIKSGKD
RKRKTRKKDGRERQSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSD
KVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEIL
NLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEV
QVARVNDWLESEVQRLTHLRDRASDLGKKKQYPLLECVESLQLLRTPEER
RRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGR
EPISPGSGDAKESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVS
ADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQ
KSPASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGY
FPSDLRIWSSSGNKDDSLLLTDALAGKFQKLLPDNGIPNSNNLHNPHLPP
LHSLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADG
TNSNHNGRNNLVNLPSPTPKQRSSGEAGRPIGGVSLPGSIEALQSPAAAT
PDSTRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTISLPNPQSTVASL
HGGQNVSHPFIAPETNANIVQSVTANNPALGTQNWAGAPTQSLEANSSIQ
ASTQQPVYAQWSGVQSTPVQNPSINFPVQGVPQVPNSWRPPMQTNQTNMQ
PNVQWGTGIADNSASQNLQPDNPNSGWASMQVSPNIGWSGPNPNMNWMAS
VQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGNAVGVVQML
GPMNANQGWYSNMAASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANT
GWSAPSGNANQGWGPLAGNQGNNRSQHHRIGDKFSSQKDQGSQPGRNWNK
PSSFGGGGGGPRHGGSRGICYMFQDTGHCKRGDSCSFRHSL*
| Relationships |
|---|
| The polypeptide, DCAR_022912, derives from mRNA, DCAR_022912. |

Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7C1L2 ((Putative zinc finger CCCH domain-containing protein 19 isoform X2 {ECO:0000313|EMBL:MPA74116.1}) (3.6.4.12 {ECO:0000313|EMBL:MPA74116.1}))
HSP 1 Score: 1248.42 bits (3229), Expect = 0.000e+0
Identity = 752/1433 (52.48%), Postives = 929/1433 (64.83%), Query Frame = 0
Query: 425 LAEDEEDERLVGDEEIPAADVEMETETDAGELVKISGGKRKRGKN------TKAAGKAQPLNMVGLPVEEEDVCFVCFDGGDLVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCG-------------------------CIKDAVILCVRGNKGFCEACIKIVMMIEDNAQGS-QAQIDFDDKSSWEYLFKDYWIDLKESLSISPVEIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKKRKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMRDGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVGHFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIKSGKDRKRKTRKKDG-RERQSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSDKVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEILNLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEVQVARVNDWLESEVQRLTHLRDRASDLGKKKQYPLLECVESLQLLRTPEERRRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGREPISP--GSGDAKESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVSADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQKSPASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGYFPSDLRIWSSSGNKDDSLLLTDALAGKFQKLLP--DNGIPNSNNLHNPHLPPLH-SLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADGTNSNHNGRNNLVNLPSPTPKQRSSG-------------------EAGRPIGGVSLPGSIEALQSPAAATP--------------------------------------DSTRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTISLPNPQSTVASLHGGQNVSHPFIAPETNANIVQSVTANNPALGTQNWAGAPTQSLEANSSIQASTQQPVYAQWSGVQSTPVQNPSINFPVQGVPQV--PNSWRPPMQTNQTNMQ----PNVQWGTGIADNSA-SQNLQPDNPNSGWASMQVSPNIGWSG-PNP---NMNWMASVQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGNAVGVVQMLGPMNANQGWYSNMAASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANTGWSAPSGNANQGWGPLAGNQGNNRSQHHRIGDKFSSQKDQ-------GSQPGRNWNKPSSFGGGGGGPRHG----GSRGICYMFQDTGHCKRGDSCSFRHS 1740
+A+D++DE +V ++EI D +ME E DA E+ + G G ++ KA +G +DVCF+CFDGG+LVLCDR+ CPKAYH SCVNR+E FF+AKGRWNCG CIKDAVILCVRGNKGFCE C+K VM+IE+N QG+ +AQ+DFDDKSSWEYLFKDYWIDLK LS+S E+A+A+NPWKGS + A K ESP E D +D G+D +S+N EASK K++ +K+ TK+++ S A+ GAE STP +TEWASKELLEFVMHM++GD++VLSQFDVQALLLEYIK NKLRDPRRKSQIICD RLEN+FGKARVGHFEMLKLLESHFL+KED+QIDD+QG+VVDT+ N ++ADGN + +IK GKD++RKTRKK R QSNLDDYAAIDIHNI+LIYLRRKLMEDLLED + F DKVV TFVRIRISGSNQKQDIYRLVQV GT+K + YK+GKRTT++++EILNLNK EVISID+ISNQEFTEDECKRLRQSIKCG I +TVG I +KAME+Q ARVNDWLE+E+ RL+HLRDRAS+ G++K+ L ECVE LQLL+TPEERRRRLE+IPEIHADP MDP + SE++ + +K+EIYTRPRGSGFSR+GREPISP GS +K+SW+G+R++S K WELNRN+S+KNL + E+A L + +N+WN GR + ++ LEK NS T+SE G++ +S R++S S V S+ S ASL A +A ISE DKIWHYQDP GK+QGPFSM Q+RKWSNTGYFP DLRIW + +DDS+LLTDALAG+FQK LP DN + + +PHL H G +Q +E S+S WA SVE+ LS D S++ RN+ VNLPSPTPKQ + G + G +G S PG ALQSPA ATP +S L SE S SH +PN EQG L+GST LP QS HG HP + ++V + P G P+Q E NSSI A Q Y QW GV ST VQNP+ NFP G + P+ WRPP+Q +Q+N+Q P+V WG G+ +N+ + +PDNPNSGW + +PN+GW G P P N+NW A+VQG PGN N GWV+P G+ QG VPGN+N GWV GN +VQ L P NAN GW + PGNGN AP N G+ VQG PGNAN GW AP+GN WG S+ R GD+FS Q+D+ G GR WN+ SSFG GG G G R +C ++ ++GHCK+G SC + H+
Sbjct: 214 IAKDDDDEEVVAEDEIQMVDTKMEIE-DAVEMAEAEKGDGGGGGKRKRGRISRVPSKAPARKAIG-----DDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSSCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMKTVMLIENNEQGNKEAQVDFDDKSSWEYLFKDYWIDLKAKLSLSLDELAQARNPWKGSDVLAGKQESPEELYDANNDGDSGSD-SSENLEASK-PKKRKAKKRSKSLTKEEDLPSAAVANGAEGSSTPGNTEWASKELLEFVMHMKNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDLRLENLFGKARVGHFEMLKLLESHFLIKEDSQIDDIQGTVVDTDVNQLEADGNADALIKGGKDKRRKTRKKGDDRGPQSNLDDYAAIDIHNINLIYLRRKLMEDLLEDFDKFHDKVVGTFVRIRISGSNQKQDIYRLVQVVGTSKAAEPYKIGKRTTDIVLEILNLNKTEVISIDTISNQEFTEDECKRLRQSIKCGLINRLTVGDILEKAMEIQAARVNDWLETEIVRLSHLRDRASEKGRRKE--LRECVEKLQLLKTPEERRRRLEEIPEIHADPNMDPSYESEEDSES-EDNKREIYTRPRGSGFSRKGREPISPQGGSFSSKDSWSGTRKNSSKNWELNRNMSNKNLLDKGEEASLVGELQNENTWNQGRDDDMQQSNNLEKVNSATNSETVGWHSHSVVRAESFSGVASETSTASLSAGLAETAGKISETDKIWHYQDPSGKIQGPFSMVQMRKWSNTGYFPVDLRIWRTIEKQDDSILLTDALAGRFQKELPQADNSFTKAQTVLSPHLSSTHPGKPYGTPLQKSEL---------------SSSSGWATPSVEVSQLSTDRWGSDYGSRNDSVNLPSPTPKQSTPGWKGGQASENEWSTSSVHVQQVGSVLGASSFPGGDRALQSPAVATPVNGQFTHSSILSSSINPSGSKEHSTVESMGVFVHTSVLNSGGQLARGSENDSSNSHTGLRPAPNSEQGILVGSTNVLPTSQS-----HG----VHPSVETHGRGSLVPKIEMVAPCAT----PGVPSQRFEPNSSIPAPGQAAAYGQWGGVPST-VQNPAGNFPTPGFSALPPPDPWRPPIQGSQSNIQPPAPPSVPWGMGVTENNTFAPGPRPDNPNSGWG-LPGNPNMGWGGXPAPGSTNINWGATVQGPAPGNANVGWVMPTGN-----QGPVPGNVNPGWVVPTGNPGAIVQGLPPGNANPGWGTPTGNPGATVPPGNGNPVWVAPTGNPGATVQGP-PGNANPGWGAPAGNPGM-WG----------SEQQRNGDRFSGQRDRGSQGGDSGFGGGRPWNRQSSFGRGGQGGSSRSLLRGQR-VC-VYHESGHCKKGASCDYLHT 1586
Match: A0A5B7BZQ5 ((Putative zinc finger CCCH domain-containing protein 19-like {ECO:0000313|EMBL:MPA74107.1}) (3.6.4.12 {ECO:0000313|EMBL:MPA74107.1}))
HSP 1 Score: 1233.01 bits (3189), Expect = 0.000e+0
Identity = 740/1443 (51.28%), Postives = 915/1443 (63.41%), Query Frame = 0
Query: 425 LAEDEEDERLVGDEEIPAADVEMETETDAGELVKISGGKRKRGKN------TKAAGKAQPLNMVGLPVEEEDVCFVCFDGGDLVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCG-------------------------CIKDAVILCVRGNKGFCEACIKIVMMIEDNAQGS-QAQIDFDDKSSWEYLFKDYWIDLKESLSISPVEIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKKRKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMRDGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVGHFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIKSGKDRKRKTRKKDGRERQSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSDKVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEILNLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEVQVARVNDWLESEVQRLTHLRDRASDLGKKKQYPLLECVESLQLLRTPEERRRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGREPISP--GSGDAKESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVSADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQKSPASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGYFPSDLRIWSSSGNKDDSLLLTDALAGKFQKLLP--DNGIPNSNNLHNPHLPPLHS-LHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADGTNSNHNGRNNLVNLPSPTPKQRSSG-------------------EAGRPIGGVSLPGSIEALQSPAAATP--------------------------------------DSTRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTISLPNPQSTVAS----------LHGGQNVSHP---FIAPETNANIVQSVTANNPALGTQNWAGAPTQSLEANSSIQASTQQPVYAQWSGVQSTPVQNPSINFPVQGVPQVPNSWRPPMQT--NQTNMQ----PNVQWGTGIADNSASQNLQPDNPNSGWASMQVSPNIGWSGPNP---NMNWMASVQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGNAVGVVQMLGPMNANQGWYSNMAASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANTGWSAPSGNANQGWGPLAGNQGNNRSQHHRIGDKFSSQKDQ-------GSQPGRNWNKPSSFGGGGGGPRHG----GSRGICYMFQDTGHCKRGDSCSFRHS 1740
+A+D++DE +V ++EI D +ME E DA E+ + G G ++ KA +G +DVCF+CFDGG+LVLCDR+ CPKAYH SCVNR+E FF+AKGRWNCG CIKDAVILCVRGNKGFCE C+K VM+IE+N QG+ +AQ+DFDDKSSWEYLFKDYWIDLK LS+S E+A+A+NPWKGS + A K ESP E D +D G+D +S+N EASK K++ +K+ TK+++ S A+ GAE STP +TEWASKELLEFVMHM++GD++VLSQFDVQALLLEYIK NKLRDPRRKSQIICD RLEN+FGKARVGHFEMLKLLESHFL+KED+QIDD+QG+VVDT+ N +DAD + + R++ +K D R QSNLDDYAAIDIHNI+LIYLRRKLMEDLLED + F DKVV TFVRIRISGSNQKQD+YRLVQV GT+K + YK+GKRTT++M+EILNL+K EVISID+ISNQEFTEDECKRLRQSIKCG I +TVG I +KA EVQ ARVNDWLE+E+ RL+HLRDRAS+ G++K+ L ECVE LQLL+TPEERRRRLE+IPEIHADP MDP F SED+DSE + +++EIY RPRGSGF R+GREPISP GS +K+SW+G+R+ S K WELNRN S+KNL +T E+A L + +N+WN GR + ++ LEK NS TSSE G+N +S R++S S V S+ S ASL A +A ISE DK+WHYQDP GK+QGPFS+ QLRKWSN GYFP+DLRIW ++ +DDS+LLTDALAG+FQK LP DN + +PHL H+ G +Q +E +S W+ SVE+ LS D S++ RN+ VNLPSPTPKQ + G +AG +G S PG ALQSPA ATP +S L SE+ S S+ +PN EQ L+GST +LP QS + HG + S P +AP T P +Q W AP+Q LE NSSI Q Y Q GV ST VQNP+ NFP G +P NQ+N+Q P+V WG +N+ + +PDNPNSGW + +PN+GW GP P N+NW A+VQG PGN N GWV+P G+ QG VPGN+N GWV GN +VQ L P NAN GW + PGNGN AP N G+ VQG PGNAN GW AP+GN WG S+ R GD+FS Q+D+ G GR WN+ SSFG GG G G R +C ++ ++GHCK+G SC + H+
Sbjct: 214 IAKDDDDEEVVAEDEIQMVDTKMEIE-DAVEMAEAEKGDGGGGGKRKRGRISRVPSKAPARKAIG-----DDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSSCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMKTVMLIENNEQGNKEAQVDFDDKSSWEYLFKDYWIDLKAKLSLSLDELAQARNPWKGSDVLAGKQESPEELYDANNDGDSGSD-SSENLEASK-PKKRKAKKRSKSLTKEEDLPSAAVANGAEGSSTPGNTEWASKELLEFVMHMKNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDLRLENLFGKARVGHFEMLKLLESHFLIKEDSQIDDIQGTVVDTDVNQLDAD---DAIKGGKDKRRKTRKKGDDRGPQSNLDDYAAIDIHNINLIYLRRKLMEDLLEDFDKFHDKVVGTFVRIRISGSNQKQDMYRLVQVVGTSKAAEPYKIGKRTTDIMLEILNLSKTEVISIDTISNQEFTEDECKRLRQSIKCGLINRLTVGDILEKATEVQAARVNDWLETEIVRLSHLRDRASEKGRRKE--LRECVEKLQLLKTPEERRRRLEEIPEIHADPNMDPSFESEDDDSETEDNRREIYIRPRGSGFGRKGREPISPRAGSFSSKDSWSGARKDS-KNWELNRNTSNKNLLDTGEEASLVGELQNENAWNQGRDKDAQQSNNLEKLNSATSSETVGWNGHSVVRAESFSGVASETSSASLSAGLAETATKISETDKMWHYQDPSGKIQGPFSVVQLRKWSNNGYFPADLRIWRTTEKQDDSILLTDALAGRFQKELPQMDNSFTKVQTVLSPHLSSTHAGKSYGTSLQTSEL----------------SSSGWSTPSVEVSKLSTDRWGSDYGSRNDSVNLPSPTPKQSTPGWTGGQASENKWSTSSFPVQQAGSVLGTSSFPGGNGALQSPAVATPVNGQFSRSSTLSSSINPGGSKQHNTVQSLGVLAPTAVLNSGGQLARGSERDSSSSYSGLSPTPNSEQVFLVGSTNALPTSQSAMTGESHGVHHSVETHGWGSGSVPKTEMVAPST-----------TPRSESQAWGSAPSQKLEPNSSIPG--QPAAYGQLGGVPST-VQNPAGNFPTAGFSALPPPDPWRPPVPGNQSNIQPPAPPSVPWGVA-ENNTFAPGPRPDNPNSGWG-LPGNPNMGWGGPAPGSTNINWGATVQGPAPGNANVGWVMPTGN-----QGPVPGNVNPGWVVPTGNPGAIVQGLPPGNANPGWGTPTGNPGATVPPGNGNPVWVAPTGNPGATVQGP-PGNANPGWGAPAGNPGM-WG----------SEQQRNGDRFSGQRDRGSQGGDSGFGGGRPWNRQSSFGRGGQGGSSRSLLRGQR-VC-VYHESGHCKKGASCDYLHT 1591
Match: A0A5B7BYP9 ((Putative zinc finger CCCH domain-containing protein 19-like {ECO:0000313|EMBL:MPA74112.1}))
HSP 1 Score: 1218.37 bits (3151), Expect = 0.000e+0
Identity = 748/1466 (51.02%), Postives = 924/1466 (63.03%), Query Frame = 0
Query: 401 METEREFDEDKFEGEVPQPDGDS---------QLAEDEEDERLVGDEEIPAADVEMETETDAGELVKISGGKRKRGKNTKAAGKAQ-PLNMVGLPVEEEDVCFVCFDGGDLVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCG-------------------------CIKDAVILCVRGNKGFCEACIKIVMMIEDNAQGS-QAQIDFDDKSSWEYLFKDYWIDLKESLSISPVEIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKKRKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMRDGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVGHFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIKSGKDRKRKTRKKDGRERQSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSDKVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEILNLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEVQVARVNDWLESEVQRLTHLRDRASDLGKKKQYPLLECVESLQLLRTPEERRRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGREPISP--GSGDAKESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVSADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQKSPASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGYFPSDLRIWSSSGNKDDSLLLTDALAGKFQKLLP--DNGIPNSNNLHNPHLPPLHSLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADGTNSNHNGRNNLVNLPSPTPKQRSSG-------------------EAGRPIGGVSLPGSIEALQSPA----------------------------------AATPDSTRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTISLPNPQSTVAS----------LHGGQNVSHP---FIAPETNANIVQSVTANNPALGTQNWAGAPTQSLEANSSIQASTQQPVYAQWSGVQSTPVQNPSINFPVQGVPQVPNSWRPPMQT--NQTNMQ----PNVQWGTGIADNSASQNLQPDNPNSGWASMQVSPNIGWSGPNP---NMNWMASVQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGNAVGVVQMLGPMNANQGWYSNMAASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANTGWSAPSGNANQGWGPLAGNQGNNRSQHHRIGDKFSSQKDQ-------GSQPGRNWNKPSSFGGGGGGPRHG----GSRGICYMFQDTGHCKRGDSCSFRHS 1740
+ETE DE GE P+ D +A D+++E ++ ++E AD E+ETET+ E+V+ G G K ++ P EEDVCF+CFDGGDLVLCDR+ CPKAYH SCVNR+E FF+AKGRWNCG CIKDAVILCVRGNKGFCE C+K VM+IE+N QG+ +AQ+DFDDKSSWEYLFKDYWIDLK LS+S E+A+A+NPWKGS + A K ESP E D +D G+D +S+N EASK K++ +K+ TK+++ S A+ GAE STP +TEWASKELLEFVMHM++GD++VLSQFDVQALLLEYIK NKLRDPRRKSQIICD RLEN+FGKARVGHFEMLKLLESHFL+KED+QIDD+QG+VVDT+ N +DAD + + R++ +K D R QSNLDDYAAIDIHNI+LIYLRRKLMEDLLED + F DKVV TFVRIRISGSNQKQDIYRLVQV GT+K + YK+GKRTT++M+EILNL+K EVISID+ISNQEFTEDECKRLRQSIKCG I +TVG I +KA EVQ ARVNDWLE+E+ RL+HLRDRAS+ G++K+ L ECVE LQLL+TPEERRRRLE+IPEIHADP MDP F SED+DSE + +++EIY RPRGSGF R+GREPISP GS +K+SW+G+R+ S K WELNRN S+KNL +T E+A L + +N+WN GR + ++ LEK NS TSSE G+N +S R++S S V S+ S ASL A +A ISE DK+WHYQDP GK+QGPFS+ QLRKWSN GYFP+DLRIW ++ +DDS+LLTDALAG+FQK LP DN + +PH L S H G+ + + + + +S W+ SVE+ LS D S+ RN+ VNLPSPTPKQ + G +AG +G S PG ALQSPA A +S L SE+ S S+ +PN EQ L+GST +LP QS + HG + S P +AP T P +Q W AP+Q LE NSSI Q Y Q GV ST VQNP+ NFP G +P NQ+N+Q P+V WG +N+ + +PDNPNSGW + +PN+GW GP P N+NW A+VQG PGN N GWV+P G+ QG VPGN+N GWV GN +VQ L P NAN GW + PGNGN AP N G+ VQG PGNAN GW AP+GN WG S+ R GD+FS Q+D+ G GR WN+ SSFG GG G G R +C ++ ++GHCK+G SC + H+
Sbjct: 235 IETETWTDEANGSGEESIPELDDTPLVGAESLMVARDDDEEEVMAEDENQMADTEIETETEVVEMVEAEKGGSGGGGKRKRGRNSRVPSRTPARKTIEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSSCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMKTVMLIENNEQGNKEAQVDFDDKSSWEYLFKDYWIDLKAKLSLSLDELAQARNPWKGSDVLAGKQESPEELYDANNDGDSGSD-SSENLEASK-PKKRKAKKRSKSLTKEEDLPSAAVANGAEGSSTPGNTEWASKELLEFVMHMKNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDLRLENLFGKARVGHFEMLKLLESHFLIKEDSQIDDIQGTVVDTDVNQLDAD---DAIKGGKDKRRKTRKKGDDRGPQSNLDDYAAIDIHNINLIYLRRKLMEDLLEDFDKFHDKVVGTFVRIRISGSNQKQDIYRLVQVVGTSKAAEPYKIGKRTTDIMLEILNLSKTEVISIDTISNQEFTEDECKRLRQSIKCGLINRLTVGDILEKATEVQAARVNDWLETEIVRLSHLRDRASEKGRRKE--LRECVEKLQLLKTPEERRRRLEEIPEIHADPNMDPSFESEDDDSETEDNRREIYIRPRGSGFGRKGREPISPRAGSFSSKDSWSGARKDS-KNWELNRNTSNKNLLDTGEEASLVGELQNENAWNQGRDKDAQQSNNLEKLNSATSSETVGWNGHSVVRAESFSGVASETSSASLSAGLAETATKISETDKMWHYQDPSGKIQGPFSVVQLRKWSNNGYFPADLRIWRTTEKQDDSILLTDALAGRFQKELPQMDNSFTKVQTVLSPH---LSSTHAGKSYETSLQTS------------ELSSSGWSTPSVEVSKLSTDRWGSS---RNDSVNLPSPTPKQSTPGWTGGQASENKWSTSSFPVQQAGSVLGTSSFPGGNGALQSPADNGQFSRSSTLSSSINPGGSKQHNTVQSLGVLAPTAVLNSGGQLARGSERDSSSSYSGLSPTPNSEQVFLVGSTNALPTSQSAMTGESHGVHHSVETHGWGSGSVPKTEMVAPST-----------TPRSESQAWGSAPSQKLEPNSSIPG--QPAAYGQLGGVPST-VQNPAGNFPTAGFSALPPPDPWRPPVPGNQSNIQPPAPPSVPWGVA-ENNTFAPGPRPDNPNSGWG-LPGNPNMGWGGPAPGSTNINWGATVQGPAPGNANVGWVMPTGN-----QGPVPGNVNPGWVVPTGNPGAIVQGLPPGNANPGWGTPTGNPGATVPPGNGNPVWVAPTGNPGATVQGP-PGNANPGWGAPAGNPGM-WG----------SEQQRNGDRFSGQRDRGSQGGDSGFGGGRPWNRQSSFGRGGQGGSSRSLLRGQR-VC-VYHESGHCKKGASCDYLHT 1639
Match: A0A5B7C1M5 ((Putative zinc finger CCCH domain-containing protein 19-like {ECO:0000313|EMBL:MPA74111.1}))
HSP 1 Score: 1216.83 bits (3147), Expect = 0.000e+0
Identity = 747/1466 (50.95%), Postives = 924/1466 (63.03%), Query Frame = 0
Query: 401 METEREFDEDKFEGEVPQPDGDS---------QLAEDEEDERLVGDEEIPAADVEMETETDAGELVKISGGKRKRGKNTKAAGKAQ-PLNMVGLPVEEEDVCFVCFDGGDLVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCG-------------------------CIKDAVILCVRGNKGFCEACIKIVMMIEDNAQGS-QAQIDFDDKSSWEYLFKDYWIDLKESLSISPVEIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKKRKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMRDGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVGHFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIKSGKDRKRKTRKKDGRERQSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSDKVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEILNLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEVQVARVNDWLESEVQRLTHLRDRASDLGKKKQYPLLECVESLQLLRTPEERRRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGREPISP--GSGDAKESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVSADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQKSPASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGYFPSDLRIWSSSGNKDDSLLLTDALAGKFQKLLP--DNGIPNSNNLHNPHLPPLHSLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADGTNSNHNGRNNLVNLPSPTPKQRSSG-------------------EAGRPIGGVSLPGSIEALQSPA----------------------------------AATPDSTRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTISLPNPQSTVAS----------LHGGQNVSHP---FIAPETNANIVQSVTANNPALGTQNWAGAPTQSLEANSSIQASTQQPVYAQWSGVQSTPVQNPSINFPVQGVPQVPNSWRPPMQT--NQTNMQ----PNVQWGTGIADNSASQNLQPDNPNSGWASMQVSPNIGWSGPNP---NMNWMASVQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGNAVGVVQMLGPMNANQGWYSNMAASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANTGWSAPSGNANQGWGPLAGNQGNNRSQHHRIGDKFSSQKDQ-------GSQPGRNWNKPSSFGGGGGGPRHG----GSRGICYMFQDTGHCKRGDSCSFRHS 1740
+ETE DE GE P+ D +A D+++E ++ ++E AD E+ETET+ E+V+ G G K ++ P EEDVCF+CFDGGDLVLCDR+ CPKAYH SCVNR+E FF+AKGRWNCG CIKDAVILCVRGNKGFCE C+K VM+IE+N QG+ +AQ+DFDDKSSWEYLFKDYWIDLK LS+S E+A+A+NPWKGS + A K ESP E D +D G+D +S+N EASK K++ +K+ TK+++ S A+ GAE STP +TEWASKELLEFVMHM++GD++VLSQFDVQALLLEYIK NKLRDPRRKSQIICD RLEN+FGKARVGHFEMLKLLESHFL+KED+QIDD+QG+VVDT+ N +DAD + + R++ +K D R QSNLDDYAAIDIHNI+LIYLRRKLMEDLLED + F DKVV TFVRIRISGSNQKQD+YRLVQV GT+K + YK+GKRTT++++EILNLNK EVISID+ISNQEFTEDECKRLRQSIKCG I +TVG I +KA EVQ ARVNDWLE+E+ RL+HLRDRAS+ G++K+ L ECVE LQLL+TPEERRRRLE+IPEIHADP MDP F SED+DSE + +++EIY RPRGSGF R+GREPISP GS +K+SW+G+R+ S K WELNRN S+KNL +T E+A L + +N+WN GR + ++ LEK NS TSSE G+N +S R++S S V S+ S ASL A +A ISE DK+WHYQDP GK+QGPFS+ QLRKWSN GYFP+DLRIW ++ +DDS+LLTDALAG+FQK LP DN + +PH L S H G+ + + + + +S W+ SVE+ LS D S+ RN+ VNLPSPTPKQ + G +AG +G S PG ALQSPA A +S L SE+ S S+ +PN EQ L+GST +LP QS + HG + S P +AP T P +Q W AP+Q LE NSSI Q Y Q GV ST VQNP+ NFP G +P NQ+N+Q P+V WG +N+ + +PDNPNSGW + +PN+GW GP P N+NW A+VQG PGN N GWV+P G+ QG VPGN+N GWV GN +VQ L P NAN GW + PGNGN AP N G+ VQG PGNAN GW AP+GN WG S+ R GD+FS Q+D+ G GR WN+ SSFG GG G G R +C ++ ++GHCK+G SC + H+
Sbjct: 181 IETETWTDEANGSGEESIPELDDTPLVGAESLMVARDDDEEEVMAEDENQMADTEIETETEVVEMVEAEKGGSGGGGKRKRGRNSRVPSRTPARKTIEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHICSSCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMKTVMLIENNEQGNKEAQVDFDDKSSWEYLFKDYWIDLKAKLSLSLDELAQARNPWKGSDVLAGKQESPEELYDANNDGDSGSD-SSENLEASK-PKKRKAKKRSKSLTKEEDLPSAAVANGAEGSSTPGNTEWASKELLEFVMHMKNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDLRLENLFGKARVGHFEMLKLLESHFLIKEDSQIDDIQGTVVDTDVNQLDAD---DAIKGGKDKRRKTRKKGDDRGPQSNLDDYAAIDIHNINLIYLRRKLMEDLLEDFDKFHDKVVGTFVRIRISGSNQKQDMYRLVQVVGTSKAAEPYKIGKRTTDIVLEILNLNKTEVISIDTISNQEFTEDECKRLRQSIKCGLINRLTVGDILEKATEVQAARVNDWLETEIVRLSHLRDRASEKGRRKE--LRECVEKLQLLKTPEERRRRLEEIPEIHADPNMDPSFESEDDDSETEDNRREIYIRPRGSGFGRKGREPISPRAGSFSSKDSWSGARKDS-KNWELNRNTSNKNLLDTGEEASLVGELQNENAWNQGRDKDAQQSNNLEKLNSATSSETVGWNGHSVVRAESFSGVASETSSASLSAGLAETATKISETDKMWHYQDPSGKIQGPFSVVQLRKWSNNGYFPADLRIWRTTEKQDDSILLTDALAGRFQKELPQMDNSFTKVQTVLSPH---LSSTHAGKSYETSLQTS------------ELSSSGWSTPSVEVSKLSTDRWGSS---RNDSVNLPSPTPKQSTPGWTGGQASENKWSTSSFPVQQAGSVLGTSSFPGGNGALQSPADNGQFSRSSTLSSSINPGGSKQHNTVQSLGVLAPTAVLNSGGQLARGSERDSSSSYSGLSPTPNSEQVFLVGSTNALPTSQSAMTGESHGVHHSVETHGWGSGSVPKTEMVAPST-----------TPRSESQAWGSAPSQKLEPNSSIPG--QPAAYGQLGGVPST-VQNPAGNFPTAGFSALPPPDPWRPPVPGNQSNIQPPAPPSVPWGVA-ENNTFAPGPRPDNPNSGWG-LPGNPNMGWGGPAPGSTNINWGATVQGPAPGNANVGWVMPTGN-----QGPVPGNVNPGWVVPTGNPGAIVQGLPPGNANPGWGTPTGNPGATVPPGNGNPVWVAPTGNPGATVQGP-PGNANPGWGAPAGNPGM-WG----------SEQQRNGDRFSGQRDRGSQGGDSGFGGGRPWNRQSSFGRGGQGGSSRSLLRGQR-VC-VYHESGHCKKGASCDYLHT 1585
Match: A0A2R6RHH7 ((Zinc finger CCCH domain-containing protein {ECO:0000313|EMBL:PSS29473.1}))
HSP 1 Score: 1212.21 bits (3135), Expect = 0.000e+0
Identity = 711/1444 (49.24%), Postives = 879/1444 (60.87%), Query Frame = 0
Query: 426 AEDEEDERLVG-DEEIPAADVEMETETDAGELV-KISGGKRKRGKNTKAAGKAQPLNMVGLPVEEEDVCFVCFDGGDLVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCG-------------------------CIKDAVILCVRGNKGFCEACIKIVMMIEDNAQG-SQAQIDFDDKSSWEYLFKDYWIDLKESLSISPVEIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKKRKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMRDGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVGHFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIKSGKDRKRKTRKKDGRER--QSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSDKVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEILNLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEVQVARVNDWLESEVQRLTHLRDRASDLGKKKQYPLLECVESLQLLRTPEERRRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGREPISP--GSGDAKESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVSADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQKSPASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGYFPSDLRIWSSSGNKDDSLLLTDALAGKFQKLLP--DNGIPNSNNLHNPHL-------PPLHSLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADGTNSNHNGRNNLVNLPSPTPKQ---RSSG-------------EAGRPIGGVSLPGSIEALQSPAAATPD-------------------------------------STRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTISLPNPQSTVASLHGGQNVSHPFIAPETNANIVQSVTANNPALGTQNWAGAPTQSLEANSSIQASTQQPVYAQWSGVQSTPVQNPSINFPVQG---VPQVPNSWRPPMQTNQTNMQ---PNVQWGTGIADNSASQ-NLQPDNPNSGWASMQVSPNIGWSGPNP---NMNWMASVQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGNAVGVVQMLGPMNANQGWYSNMA--ASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANTGWSAPSGNANQG---WGPLAGN----------QGNNRSQHHRIGDKFSSQKDQGSQ---------PGRNW-NKPSSFGGGGGGPRHGGSRGICYMFQDTGHCKRGDSCSFRHS 1740
+D +D VG EE P AD EME DAGE+ + G GK + P V EEDVCF+CFDGG+LVLCDR+ CPKAYH SCVNR+E FF+AKGRWNCG CIKDAVILC+RGNKGFCE C+K VM+IE+N Q + ++DFDDKSSWEYLFKDYWIDLK LS+S E+A+A PWKGS + K ESP E D +D G G++ +S+ EASK K+RK +RLKS ++ +S A T G S P TEWASKELLEFVMHM++G+++VLSQFDVQA+LLEYIKTNKLRDPRRKSQIICDARLEN+FGKARVGHFEMLKLLESHFL+KED+Q DD+QG+VVDTE N ++ADG I+ K G +++ +K G ER QSNLDDYAAID+HNISLIYLRRKL+EDLLED+ F KVV TFVRIRISGSNQKQD+YRLV+V GT K + YKVGK+TT+L++EILNLNK EV+ ID+ISNQEFTEDECKRLRQSIKCG I + VG I +KAM+VQ ARVNDWLE+E+ RL+HLRDRASDLG++K+ L ECVE LQLL+T +ER RRLE+IP+IHADP M P++ S+++DSE++ KQEI RPRGS FSR+GREPISP GS + +SW+G+++ SGK WELNRNLS+K+ +N E+ L ++ +N+WN G +E +EK NS +SE G N +S ARS+S S S+ S ASL + I+E++KIWHYQDP KVQGPFS+ QLRKW+NTGYFP+DL+IW S+ ++DSLLLTDALAG+FQK LP DN + + NPHL P SL QG + E+L DQ+H S+S W S+E+P +S GRN+ +NLPSPTP R +G +A +G S PG SPA T D S+ LM SE S P+ PN EQ G T +LP Q+ + S GQ + ++P Q W G +Q+LE N S+ Q Y W G+ + VQN S NF G PQ P+ WRPP+ NQ N+Q P++ WG G ++AS +PDNP++ W +Q +PN+GW GP P NMNW +VQ PG +N GWV G+ G FQ PGN N GWV QPGN VQ P N N GW + QG PGN N N G+ VQGQ PGNAN GW P NQG GP GN N QH +FS Q+D+G Q GR W N+PSS G GG + +C +Q GHCK+G SC H+
Sbjct: 431 TDDHDDNEEVGTQEETPIADTEMEM--DAGEMAGEEKGVGGAGGKRKRGKNSGVPARASSRRVVEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSICEKNAYYMCYTCTFSLCRTCIKDAVILCIRGNKGFCETCMKTVMLIENNEQADKENRVDFDDKSSWEYLFKDYWIDLKAKLSLSSFELAQATYPWKGSDVLTGKQESPEEVFDANNDQGSGSE-SSETLEASKNKRRKSKRRLKSLIKDENLPSSRA-TIGDVETSIPGPTEWASKELLEFVMHMKNGEKSVLSQFDVQAMLLEYIKTNKLRDPRRKSQIICDARLENLFGKARVGHFEMLKLLESHFLVKEDSQTDDIQGTVVDTEDNQLEADGTIDAPAK-GNKYRKRKMRKKGDERGPQSNLDDYAAIDMHNISLIYLRRKLVEDLLEDMGKFETKVVGTFVRIRISGSNQKQDMYRLVKVVGTRKAAEPYKVGKKTTDLVLEILNLNKMEVVPIDTISNQEFTEDECKRLRQSIKCGLIDRLDVGGILEKAMQVQEARVNDWLEAEILRLSHLRDRASDLGRRKE--LRECVEKLQLLKTRDERVRRLEEIPKIHADPNMHPDYESDEHDSEMEDDKQEILARPRGSVFSRKGREPISPRRGSFSSPDSWSGTKKDSGKNWELNRNLSNKDFSNKAEEVALVGELTNENTWNQGSDNEGN----MEKVNSGINSETVGRNLHSFARSESFSGAASETSHASLAPGASEISTKINEMEKIWHYQDPSAKVQGPFSLVQLRKWNNTGYFPADLKIWRSTEKQEDSLLLTDALAGRFQKELPSVDNNFTKTQTVQNPHLSSTPTGKPYGASLQQGNGGEGVERLRFDQSHGVQSQ--PSSSSGWGTPSIEVPKVS-------DYGRNDSINLPSPTPMSGTPRWTGGQASERKWSSPVQQAASVLGVNSFPGGNGPTHSPAVITRDGGQLTRPSASSSVNQSGNKEHIQMESFGVSAPHTVLNSSMGLMRGSENASSNVLPSSTPVPNSEQAIPTGPTTALPTSQTIMTSESHGQ------------------TSGSDP----QTWGGVSSQNLEPNPSLPVPVQPAAYGHWGGIPT--VQNTSGNFSTPGFAAFPQ-PDPWRPPVVGNQPNIQQAPPSIPWGMGTPQSNASAPGPRPDNPSTVWGPVQGNPNMGWVGPVPGTTNMNWGPAVQ--VPGAVNTGWVATTGNPGTMFQAMPPGNANPGWVAQPGNLGSAVQGAPPGNGNPGWVAPTGNPGFNQGQVPGNVNPVWVPSTGNPGTTVQGQAPGNANAGWGPPP-TGNQGTTVQGPAPGNANAGYGGNPGGWGNEKQHGGDSKRFSGQRDRGFQRRDSGGYNDGGRRWNNRPSSSGSGG--------QIVCKFYQQ-GHCKKGSSCDMLHT 1817
Match: A0A2R6R6T2 ((Zinc finger CCCH domain-containing protein {ECO:0000313|EMBL:PSS21702.1}))
HSP 1 Score: 1200.27 bits (3104), Expect = 0.000e+0
Identity = 804/1828 (43.98%), Postives = 1022/1828 (55.91%), Query Frame = 0
Query: 77 GVEVEAGELERKDELS-----------GEIEVSGVGVDASGIEVRDDKDDE---IEGEVLYDTVRGDDKN--DEL--------EGEVVAEKKDELQGNYGCQVAKEGEVEGNGVDEGEILGDNDQVEDKDVCEDGFDDKQNVCVQVVAEKKDELEVEGGMNVGEEAGDKVVPESEIKDEAGVELQAGAVCEEVKAEELKGDCGTEVVGEALCEVGNEAENKSEIETEMKVSREPVKNVDDMVEEEKVEMGYVSSQSLNEVEERAANIEDNAEHSSGLI-GLAEDTVMEEKNLVMESVNKKRDDELDSAPESDDEEDIMETGREYDEDKFEGEVPQPDGDSQLAEDEEDIMETEREFDEDKFEGEVPQPDGDSQLAED---------EEDERLVGDEEIPAADVEMETETDAGELVKISGGKRKRGKNTKAAGKAQ-PLNMVGLPVEEEDVCFVCFDGGDLVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCG-------------------------CIKDAVILCVRGNKGFCEACIKIVMMIEDNAQG-SQAQIDFDDKSSWEYLFKDYWIDLKESLSISPVEIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKKRKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMRDGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVGHFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIKSGKDRKRKTRKKDGRER--QSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSDKVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEILNLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEVQVARVNDWLESEVQRLTHLRDRASDLGKKKQYPLLECVESLQLLRTPEERRRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGREPISP--GSGDAKESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVSADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQKSPASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGYFPSDLRIWSSSGNKDDSLLLTDALAGKFQKLLP--DNGIPNSNNLHNPHL-------PPLHSLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADGTNSNHNGRNNLVNLPSPTPK---------QRSSGEAGRPI-------GGVSLPGSIEALQSPAAAT-------------------------------------PDSTRNLMLASEKTPSISH--PAFGASPNPEQGNLLGSTISLPNPQSTVASLHGGQNVSHPFIAPETNANIVQSVTANNPALGTQNWAGAPTQSLEANSSIQASTQQPVYAQWSGVQSTPVQNPSINFPVQG---VPQVPNSWRPPMQTNQTNMQ---PNVQWGTGIADNSASQ-NLQPDNPNSGWASMQVSPNIGWSGPNP---NMNWMASVQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGNAVGVVQMLGPMNANQGWYSNMA--ASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANTGWSAPS-------------GNANQGWGPLAGNQGNNRSQHHRIGDKFSSQKDQGSQ---------PGRNW-NKPSSFGGGGGGPRHGGSRGICYMFQDTGHCKRGDSCSFRHS 1740
G+ +E E+ K E++ G I ++G V+ G EV + +D EGE+L + K DEL +G VAE + G +V +G GV EGEIL +VE K + +D A + E+ G EE +V S + G + G + + ++ G V G NE E KSE+E V+D V + S +E+E+ E I G+ + + + +ES K EL + + E + +E DED+ G+ G++ + + E ME+E E VPQ D + D +++E + +EE P D EME DA + G G + + P V EEDVCF+CFDGG+LVLCDR+ CPKAYH SCVNR+E FF+AKGRWNCG CIKDAVILCVRGNKGFCE C+K VM+IE+N Q + ++DFDDKSSWEYLFKDYWIDLK LS+S +E+A+AK PWKGS + A K ESP E D +D G G++ +S+ EASK K+RK +RLKS ++ +S A T G S P TEWASKELLEFVMHM++G+++ LSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLEN+FGKARVGHFEMLKLLESHFL+KED+Q DD+QG+VVDTE N ++ADG I+ +K G +++ +K G ER QSNLDD+AAID+HNISLIYLRRKL+EDLLED+ +F KVV TFVRIRISGSNQKQD+YRLV+V GT K + YKVGK+TT+L++EILNLNK EV+ ID+ISNQEFTEDECKRLRQSIKCG I + VG I KAM+VQ ARVNDWLE+E+ RL+HLRDRASDLG++K+ L ECVE LQLL+TPEER RRLE+IP+IHADP M P++ SE++DSE++ +KQEI RPRGS FSR+GREPISP GS + +SW+G+++ SGK WEL+RNLS+K+ +N E+A L + +N+WN GR E +EK NS T+SE G N +S ARS+S S S+ S ASL V+ NI+E +KIWHYQDP GKVQGPFS+ QLRKW+NTGYFP+DL+IW S+ ++DSLLLTDAL G+FQK LP DN + + +HNP L P SL +G + E+L DQ+H +S R S+EI +S RN+ +NLPSPTP Q S G+ P+ G S P SPA T +S+ L SE + S+ P+ PN EQ +GST +LP Q+ + S GQ ++P Q W GA +Q+LE N S+ Q Y W G+ ST VQN S NF G PQ P+ WRPP+ NQ N+Q PNV WG G ++AS +PDNPN+ W +Q +P +GW GP P NMNW +VQG PG +NAGWV G+ G FQ PGN N GWV QPGN VQ P N N GW + S QG GN N P N G+ VQGQ PGNAN GW PS GNAN G+G GN + QH +FS Q+D+G Q GR W N+PS GG I F G CK+G SC H+
Sbjct: 138 GILIEGTEMVMKSEVTNSTRDDGAGAEGAILMAGTQVEMKG-EVANSTEDGGALTEGEILMTGTEEEMKCEVDELANSSVATGDGGAVAEGGTLMAGITNTRVETG---DGGGVTEGEILMAGTEVEMKGEVANSTEDGG-------ASTEGEILTTG---TEEEMKCEVANSSVATGDGGAVAEGGTLMAGITNSRVETGDGGGVKGAENLMASNETEMKSEVE-----------GVEDGV--------WRSVTGFDELEQVVVKSPVVEEEVVEEIAGVGNEMELGNEFEAIESSEAKFVCELGDSQQCGAESFAV---KETDEDEAMGK-----GETGMEDTE---MESENEVRMTS----VPQLDNSHNVGADSLIVSMNDHDDNEEVGTEEETPIEDTEMEM--DATVMAGEEKGVGGGGGKRRRGKNSGVPARAPSRRVVEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSICEKNAYYMCYTCTFSLCRACIKDAVILCVRGNKGFCETCMKTVMLIENNEQADKENRVDFDDKSSWEYLFKDYWIDLKAKLSLSSLELAQAKYPWKGSDVLAGKQESPEEVFDANNDQGSGSE-SSETLEASKVKRRKSKRRLKSLIKDENLPSSRA-TIGDVEPSIPGPTEWASKELLEFVMHMKNGEKSGLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENLFGKARVGHFEMLKLLESHFLVKEDSQTDDIQGTVVDTEDNQLEADGIIDAPVK-GSKDRKRKMRKKGNERGPQSNLDDFAAIDMHNISLIYLRRKLVEDLLEDMGSFDTKVVGTFVRIRISGSNQKQDMYRLVKVVGTRKAAEPYKVGKKTTDLVLEILNLNKMEVVPIDTISNQEFTEDECKRLRQSIKCGLIDRLDVGDILKKAMQVQAARVNDWLEAEILRLSHLRDRASDLGRRKE--LRECVEKLQLLKTPEERERRLEEIPKIHADPNMHPDYESEEHDSEMEDAKQEILARPRGSAFSRKGREPISPHRGSFCSPDSWSGTKKDSGKNWELSRNLSNKDFSNKAEEAALVGELVNENTWNQGRDKEANS---MEKVNSGTNSETVGRNLHSFARSESFSGAASETSQASLAPGVSEIASNINETEKIWHYQDPSGKVQGPFSLVQLRKWNNTGYFPADLKIWRSTEKQEDSLLLTDALTGRFQKELPSVDNNLTKTQTVHNPPLSSTSTGKPYGASLQEGNGGEGVERLRFDQSHGVQSQLSSSNGR--GTPSIEIHKVS-------DYSRNDSINLPSPTPMSSTPRWTGGQASEGKWSSPVQQPASVPGVNSFPAGNGPTHSPAVVTLNGGQLTRSSTSSSINRSGSKEHIQMESFSVSAPHAVLNSSMELTRGSENATASSNILPSSTPVPNSEQAIPMGSTTALPASQTIITSESHGQ------------------TAGSDP----QTWGGASSQNLEPNPSLPVPVQPSAYGHWGGIPST-VQNTSGNFSTPGFAAFPQ-PDPWRPPVAGNQPNIQQAPPNVPWGMGTPQSNASAPGPRPDNPNNVWGPVQGNPTMGWVGPVPGTTNMNWGPAVQGPVPGVVNAGWVATTGNPGTMFQAMPPGNANPGWVAQPGNPGTAVQGAPPGNGNPGWVAPTGNPGSNQGQVLGNVNPVWVPPTGNPGTTVQGQAPGNANAGWGPPSARNQGATVQGPAPGNANAGYGGNPVGWGNEK-QHGGDNKRFSGQRDRGYQRQDSGGYNDGGRRWNNRPSLSSSSSGGGGQ-----IVCKFHQYGRCKKGSSCDMLHT 1868
Match: A0A7J0EVU7 ((GW repeat-and PHD finger-containing protein NERD {ECO:0000313|EMBL:GFY89727.1}))
HSP 1 Score: 1149.04 bits (2971), Expect = 0.000e+0
Identity = 682/1413 (48.27%), Postives = 845/1413 (59.80%), Query Frame = 0
Query: 455 ELVKISGGKRKRGKNTKAAGKAQPLNMVGLPVEEEDVCFVCFDGGDLVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCG-------------------------CIKDAVILCVRGNKGFCEACIKIVMMIEDNAQG-SQAQIDFDDKSSWEYLFKDYWIDLKESLSISPVEIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKKRKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMRDGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVGHFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIKSGKDRKRKTRKKDGRER--QSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSDKVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEILNLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEVQVARVNDWLESEVQRLTHLRDRASDLGKKKQYPLLECVESLQLLRTPEERRRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGREPISP--GSGDAKESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVSADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQKSPASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGYFPSDLRIWSSSGNKDDSLLLTDALAGKFQKLLP--DNGIPNSNNLHNPHL-------PPLHSLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADGTNSNHNGRNNLVNLPSPTPKQ---RSSG-------------EAGRPIGGVSLPGSIEALQSPAAATPD-------------------------------------STRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTISLPNPQSTVASLHGGQNVSHPFIAPETNANIVQSVTANNPALGTQNWAGAPTQSLEANSSIQASTQQPVYAQWSGVQSTPVQNPSINFPVQG---VPQVPNSWRPPMQTNQTNMQ---PNVQWGTGIADNSASQ-NLQPDNPNSGWASMQVSPNIGWSGPNP---NMNWMASVQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGNAVGVVQMLGPMNANQGWYSNMA--ASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANTGWSAPSGNANQG---WGPLAGN----------QGNNRSQHHRIGDKFSSQKDQGSQ---------PGRNW-NKPSSFGGGGGGPRHGGSRGICYMFQDTGHCKRGDSCSFRHS 1740
ELV + G RGK + G L++ G + F+CFDGG+LVLCDR+ CPKAYH SCVNR+E FF+AKGRWNCG CIKDAVILC+RGNKGFCE C+K VM+IE+N Q + ++DFDDKSSWEYLFKDYWIDLK LS+S E+A+A PWKGS + K ESP E D +D G G++ +S+ EASK K+RK +RLKS ++ +S A T G S P TEWASKELLEFVMHM++G+++VLSQFDVQA+LLEYIKTNKLRDPRRKSQIICDARLEN+FGKARVGHFEMLKLLESHFL+KED+Q DD+QG+VVDTE N ++ADG I+ K G +++ +K G ER QSNLDDYAAID+HNISLIYLRRKL+EDLLED+ F KVV TFVRIRISGSNQKQD+YRLV+V GT K + YKVGK+TT+L++EILNLNK EV+ ID+ISNQEFTEDECKRLRQSIKCG I + VG I +KAM+VQ ARVND + S L K L ECVE LQLL+T +ER RRLE+IP+IHADP M P++ S+++DSE++ KQEI RPRGS F R+GREPISP GS + +SW+G+++ SGK WELNRNLS+K+ +N E+ L ++ +N+WN G +E +EK NS +SE G N +S ARS+S S S+ S ASL + I+E++KIWHYQDP KVQGPFS+ QLRKW+NTGYFP+DL+IW S+ ++DSLLLTDALAG+FQK LP DN + + NPHL P SL QG + E+L DQ+H S+S W S+E+P +S GRN+ +NLPSPTP R +G +A +G S PG SPA T D S+ LM SE S P+ PN EQ G T +LP Q+ + S GQ + ++P Q W G +Q+LE N S+ Q Y W G+ + VQN S NF G PQ P+ WRPP+ NQ N+Q P+V WG G ++AS +PDNP++ W +Q +PN+GW GP P NMNW +VQ PG +NAGWV G+ G FQ PGN N GWV QPGN VQ P N N GW + QG PGN N N G+ VQGQ PGNAN GW P + NQG GP GN N QH +FS Q+D+G Q GR W N+PSS G GG + +C +Q GHCK+G SC H+
Sbjct: 442 ELVVLEG----RGKEVRIQGFPLELHLGG--SLRKTFVFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSICEKNAYYMCYTCTFSLCRTCIKDAVILCIRGNKGFCETCMKTVMLIENNEQADKENRVDFDDKSSWEYLFKDYWIDLKAKLSLSSFELAQATYPWKGSDVLTGKQESPEEVFDANNDQGSGSE-SSETLEASKNKRRKSKRRLKSLIKDENLPSSRA-TIGDVETSIPGPTEWASKELLEFVMHMKNGEKSVLSQFDVQAMLLEYIKTNKLRDPRRKSQIICDARLENLFGKARVGHFEMLKLLESHFLVKEDSQTDDIQGTVVDTEDNQLEADGTIDAPAK-GSKYRKRKMRKKGDERGPQSNLDDYAAIDMHNISLIYLRRKLVEDLLEDMGKFETKVVGTFVRIRISGSNQKQDMYRLVKVVGTRKAAEPYKVGKKTTDLVLEILNLNKMEVVPIDTISNQEFTEDECKRLRQSIKCGLIDRLDVGGILEKAMQVQEARVND-------NFPFCLNLESSLKKGLLRILRECVEKLQLLKTRDERVRRLEEIPKIHADPNMHPDYESDEHDSEMEDDKQEILARPRGSVFIRKGREPISPRRGSFSSPDSWSGTKKDSGKNWELNRNLSNKDFSNKAEEVALVGELTNENTWNQGSDNEGN----MEKGNSGINSETVGRNLHSFARSESFSGAASETSHASLAPGASEIATKINEMEKIWHYQDPSAKVQGPFSLVQLRKWNNTGYFPADLKIWRSTEKQEDSLLLTDALAGRFQKELPSVDNNFTKTQTVQNPHLSSTPTGKPYGASLQQGNGGEGVERLRFDQSHGVQSQ--PSSSSGWGTPSIEVPKVS-------DYGRNDSINLPSPTPMSGTPRWTGGQASERKWSSPVQQAASVLGVNSFPGGNGPTHSPAVITRDGGQLTRPSASSSVNQSGNKEHIQMESFGVSAPHTVLNSSMGLMRGSENASSNVLPSSTPVPNSEQAIPTGPTTALPTSQTIMTSESHGQ------------------TSGSDP----QTWGGVSSQNLEPNPSLPVPVQPAAYGHWGGIPT--VQNTSGNFSTPGFAAFPQ-PDPWRPPVAGNQPNIQQAPPSVPWGMGTPQSNASAPGPRPDNPSTVWGPVQGNPNMGWVGPVPGTTNMNWGPAVQ--VPGAVNAGWVATTGNPGTMFQAMPPGNANPGWVAQPGNLGSAVQGAPPGNGNPGWVAPTGNPGFNQGQVPGNVNPVWVPSTGNPGTTVQGQAPGNANAGWGPPP-SGNQGTTVQGPAPGNANAGYGGNPGGWGNEKQHGGDSKRFSGQRDRGFQRRDSGGYNDGGRRWNNRPSSSGSGG--------QIVCKFYQQ-GHCKKGSSCDMLHT 1788
Match: A0A834GDS6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7127950.1}))
HSP 1 Score: 1140.18 bits (2948), Expect = 0.000e+0
Identity = 707/1470 (48.10%), Postives = 890/1470 (60.54%), Query Frame = 0
Query: 389 GDSQLAEDEEDIMETEREFDEDKFEGEVPQPDGDSQLAEDEEDERLVGDEEIPAADVEMETETDAGELVKI-----SGGKRKRGKNTKAAGKAQPLNMVGLPVEEEDVCFVCFDGGDLVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCG-------------------------CIKDAVILCVRGNKGFCEACIKIVMMIEDNAQ-GSQAQIDFDDKSSWEYLFKDYWIDLKESLSISPVEIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKKRKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMRDGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVGHFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIK-SGKDRKRKTRKKDGRERQSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSDKVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEILNLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEVQVARVND--------------WLESEVQRLTHLRDRASDLGKKKQYPLL----ECVESLQLLRTPEERRRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGREPISPGSGDAK--ESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVSADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQKS--PASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGYFPSDLRIWSSSGNKDDSLLLTDALAGKF---QKLLP-DNGIP-NSNNLHNPHL-------PPLHSLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADGTNSNHNGRNNLVNLPSPTPKQRSSGEAGRPIGGVSLPGSIE-------------ALQSPAAATP----DSTRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTISLPNPQSTVAS-LHGGQNV--SHPFIAPETNANIVQSVTANNPAL-GTQNWAGAPTQSLEANSSIQASTQQPVYAQWSGVQSTPVQNPSINFPVQGVPQV--PNSWRPPMQT-NQTNMQ----PNVQWGTGIADNSASQNLQPDNPNSGWASMQVSPNIGWSGPNP---NMNWMASVQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGN-AVGVVQMLGPMNANQGWYSNMAASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANTGWSAPS--------------GNANQGWGPLA----GNQGNNRSQHHRIGDKFSSQKDQ-GSQPGRNWNKP-SSFGGGGGGPRHGGSRGICYMFQDTGHCKRGDSCSFRHS 1740
G+S L ED + E E E + VP D +SQ + E++E ++E P D EMETET+ GE + GGKRKRGK TK K P V EDVCF+CFDGGD+VLCDR+ CPKAYH SCVNR+E FF+AKGRWNCG CIK++V CVR +KGFCE C+K VM+IE+N + G + +++FDDKSSWEYLFKDYW DLK LS+S E+A+AKNPWKGS + A K ESP E D D G G++++ + ++ KR+ +K+ TK+++S S + A S P +TEWASKELLEFVMHM++GD +VLSQFDVQALLLEYIK NKLRDPR+KSQIICD+RLEN+FGKARVGHFEMLKLLESHF +KED+Q DDVQGSVVD NH++ADGN + K S R++ RK D R QSNL DYAAIDIHNISLIYLRRKL+EDLLEDIE F DKV TFVRIRISGS+Q QD+YRLVQV GT K + YKVGK+TT+L++EILNLNK EV+SID+ISNQEFTEDECKRLRQSIKCG I +TVG I DK+ME+Q ARVND WLE+E RL+HLRDRASD+G+KK+YP L ECVE LQLL+TPEER RRLE++P+IHADPKMDP + SE+ D+E++ +KQE ++RP+GSGF+R GREPISP G+ +S + +R SSGK WE NRN+S+K+ E+A + +N WN GR E ++K T+SE G + S ARSDS S + ++ P+ A VA I+E +KIWHYQDP GK+QGPFS+ QLRKW++ GYFP DLRIW ++ ++DSLLL DALAG+F ++L P DN P +H+PHL P SLH +E +L S+S WA SVE+P SAD S+++ RN+ NLPSPTP + G P S+ S+ A++S +TP S R + SE S S + +QG +G+T +LP Q+ ++S HG Q + + A + + N TQ W GA Q+ E N S+ P Y QW GV ST +QNP+ NF Q P P+ WRPP+ NQ N+Q PNV WG G+A N+A Q +N N+ W M +PN+GW GP P NMNW A VQG +N GWV G+ G QG PGN+N GW PQ GN G+ Q+ P G P NGN G AP N G NVQGQ+PGN N W P+ GN+N GWG A G +G+++ QH+R + FS Q+D+ G G WN P S G G G G +C F GHCK+G C H+
Sbjct: 335 GESGL-EDTDMEKELEAEVTNEGRSTSVPLLD-NSQSVDAEDNEGAEAEDEAPMVDTEMETETEVGETPEADKGASGGGKRKRGKVTKVPAKPLPRKKV----IGEDVCFICFDGGDMVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSHCGKNAHYMCYTCTFSLCKACIKESVFFCVRASKGFCETCMKTVMLIENNERAGEEDRVNFDDKSSWEYLFKDYWEDLKAKLSLSADELAEAKNPWKGSDVLAGKQESPEEVFDATKDQGSGSESSEN--MVTRRAKRRKAKKKSKSLTKEEDSPSSRVVIDAVGASIPSNTEWASKELLEFVMHMKNGDNSVLSQFDVQALLLEYIKRNKLRDPRKKSQIICDSRLENLFGKARVGHFEMLKLLESHFFVKEDSQPDDVQGSVVDNVVNHMEADGNTDVPTKGSKDRRRKMRRKGDLRGPQSNLGDYAAIDIHNISLIYLRRKLVEDLLEDIEKFYDKVFGTFVRIRISGSSQNQDMYRLVQVVGTRKAAEPYKVGKKTTDLVLEILNLNKTEVVSIDTISNQEFTEDECKRLRQSIKCGLIERLTVGDILDKSMEIQAARVNDVSFMDVIAQVYHIQWLETETVRLSHLRDRASDMGRKKEYPFLFTLRECVEKLQLLKTPEERMRRLEEVPKIHADPKMDPSYESEEEDTEMEDNKQENFSRPQGSGFNRIGREPISPRRGNFSPVDSGSSTRTSSGKNWETNRNVSNKDFPIKSEEATTVGEMKNENVWNQGRDREAN----MDKVRLGTNSETIGRDSRSFARSDSFSGAAASETSQPSLAAAGVAETATKINESEKIWHYQDPAGKIQGPFSLVQLRKWNSNGYFPVDLRIWRTTEKQEDSLLLKDALAGRFFQKKELSPMDNNSPVPPQTVHSPHLSSTPAGMPYGASLHHRKEGGVRSQLEP------------SSSSGWATPSVEVPKGSADRLGSDYH-RNDSTNLPSPTPMSSTPRWTGGPTHSPSVATSVSSGQFTQCGSKEHTAMESLGVSTPLSVLSSGRESIRGSENDSSSS---LLVPRSEQQGIYVGTTTALPASQTILSSESHGIQPSVETQQWGAGSVRTQEMGAAPHQNAGTETTQTWGGAAAQNSEPNPSL------PAYGQWGGVPST-IQNPTGNFSTQVFPAFPQPDPWRPPVVVNNQPNIQPAAPPNVPWGMGVAQNNAFPPAQ-NNVNTVWVPMPGNPNMGWVGPAPGATNMNWGAPVQGT----INPGWVAATGNPGAMVQGIPPGNVNPGWAPQTGNPGSGIPQVGNP--------------GSGIQPANGNPGWVAPTGNTGYNVQGQVPGNVNPVWGTPNGNPGTATVQGPAAPGNSNPGWGSSAPVNSGMRGDDK-QHNR-NNSFSGQRDRSGFGGGERWNNPRQSSFGSGSGGGQKGPNTVC-PFHKHGHCKKGTYCDMLHT 1747
Match: A0A6P6WA77 ((zinc finger CCCH domain-containing protein 19 {ECO:0000313|RefSeq:XP_027112154.1}))
HSP 1 Score: 1135.55 bits (2936), Expect = 0.000e+0
Identity = 684/1449 (47.20%), Postives = 875/1449 (60.39%), Query Frame = 0
Query: 387 PDGDSQLAEDEEDIMETEREFDEDKFEGEVPQPDGDSQL------AEDEEDERLVGDEEIPAADVEMETETDAGELVKISGGKRKRGKNTK------AAGKAQPLNMVGLPVEEEDVCFVCFDGGDLVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCG-------------------------CIKDAVILCVRGNKGFCEACIKIVMMIE-DNAQGSQAQIDFDDKSSWEYLFKDYWIDLKESLSISPVEIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKKRKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMRDGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVGHFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIKSGKDRKRKTRKK-DGRERQSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSDKVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEILNLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEVQVARVNDWLESEVQRLTHLRDRASDLGKKKQYPLLECVESLQLLRTPEERRRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGREPISPGSGDAKESWTGSRRSSGKGWELNRNLSDKNLANTVEDAP--LSIGVSADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQKSPASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGYFPSDLRIWSSSGNKDDSLLLTDALAGKFQKLLPDNGIPNSNNLHNPHLPPLHSLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADGTNSNHNGRNNLVNLPSPTPKQRSSGEAGRP----IGGVSLPGSIEALQSPAAATP-------------DSTRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTIS--LPNPQSTVASLHGGQNVSHPFIAPETNANIVQSVTANNPALGTQNWAGAPTQSLEANSSIQASTQQPVYAQWSGVQSTPVQNPSINFPVQGVPQVPNS--WRPPMQTNQTNMQ----PNVQWGTG-IADNSASQNLQPDNPNSGWASMQVSPNIGWSGPNP---NMNWMASVQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGNAVGVVQMLGPMNANQGWYSNMAASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANTGWS------------APSGNANQGWGPLAGNQGN-----NRSQHHRIGDK-FSSQKDQGSQPG-------RNWNKPSSFGGGGGGP-RHGGSRGICYMFQDTGHCKRGDSCSFRH 1739
P D+++ + E E E+E + + V + ++++ +DEEDE +V +E A+ E+ETETD GE K +G KRKRGKN+K G+AQ L +EDVCF+CFDGGDLVLCDR+ CPKAYH SCVNR+E FF+AKG+WNCG C+KDAV LCVRGNKGFCE C++IV +IE D+ + QIDFDDKSSWEYLFKDY+ DLK L IS EIAKAKNPWKGS + A K SP + T + G GT+ + +NPEASKPK++K KRL+S A ++ES + G E S+P TEWAS+ELLEFV+HM++GD++VLSQFDVQALLLEYI+ NKLRDPR+KSQIICD RLEN+FGK RVGHFEMLKLLESHFL+KED +D QGSVVDTE N +D D N E K K+RKRK RKK D R +N DYAAIDIHNI+LIYLRRKLMEDL+ED++ F KV+ TFVRIRISG+ QKQD+YRLVQV GT+K + YKVGKRTT++M+EILNLNK E++SID+ISNQ+FTE+ECKRLRQSIKCG + MTVG I DKAME+Q ARVNDWLESE RL+HLRDRASD+G++K+ L ECVE LQ+L+ PEER RRLE+IP+IH+DPKMDP SE++DS+ D +++E++ + SGF+RRGR PISP S + + S K E NR + KNL+ EDA S + ++ WN GR E+ L + T S+ GFN + S SL A A + I+E K WHYQDP GKVQGPFSMAQLRKWSNTGYFP+DLRIW + +D+S+LLTDALAGK K +S + SL RE E+ N +Q+ +++ S+ A E+P LS + R NL NLPSPTPK ++ E G IGG S G I QSPAAA P +S LM + E +S FG + N EQ N++GS S +P+ +T ++ HP A ++ +QS P + + W G PTQ +E ++ + Q Y W GV S QNP+ NF G P +P W PP Q+NQ NMQ PN+ WGTG I +NS++ L+ +N ++GWA +Q +PN+GW+G P N++W A+VQ PG+ N GW G+ G QG +P N+ SGWV PGN + QG G N G AP N+GS VQ +PGN GW+ APSGN +QGWG GNQG + + ++GD F + +G Q G R WN+ SSFG G P R+ R + + G C++G C++ H
Sbjct: 552 PTADTEMEKKIE--AEMEKEIEAEMVTTRVSDVESNAKIDDSVSVPQDEEDEDMVAEEGSALAETELETETDVGESSKAAGEKRKRGKNSKNLTNSKIGGRAQKLM-------DEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHICSTCQKNAYYMCLTCPFALCKGCVKDAVFLCVRGNKGFCETCMRIVKLIESDDKDTNNVQIDFDDKSSWEYLFKDYYTDLKSKLCISSAEIAKAKNPWKGSDVSAVKEGSPEAAVVTCNAGGSGTEYSGENPEASKPKRKKGKKRLRSVAN-EEESAGAVVRGGGEDISSPGKTEWASEELLEFVVHMKNGDKSVLSQFDVQALLLEYIRRNKLRDPRKKSQIICDTRLENLFGKPRVGHFEMLKLLESHFLIKEDAYTEDNQGSVVDTEVNQLDVDENAETPTKGNKERKRKIRKKVDNRGTLANRYDYAAIDIHNINLIYLRRKLMEDLIEDVDEFQHKVIGTFVRIRISGNTQKQDLYRLVQVVGTSKAAEPYKVGKRTTDMMLEILNLNKTEIVSIDTISNQDFTEEECKRLRQSIKCGLLNRMTVGDILDKAMEIQAARVNDWLESETLRLSHLRDRASDMGRRKE--LRECVEKLQILKAPEERLRRLEEIPKIHSDPKMDPNHESEEDDSDTDDNRREVFQKTSNSGFTRRGRAPISPRSDYSPKDSHNGGNFSDKNREPNRTIFSKNLSIASEDASDNQSGSMVNEDIWNQGREKNREELNNLVNLSQHTKSDIAGFN-----------SMASVNLSVSLPAKEAETVVKINETQKAWHYQDPSGKVQGPFSMAQLRKWSNTGYFPADLRIWRAIEKQDESILLTDALAGKLHKETSG----DSKFVAASGKTSETSLLLSRENSFGERSNGEQHREAQTFHLD-ISKGLIAPPAEVPKLSTEKWT-----RTNLSNLPSPTPKHGNTVETGEHGGTLIGGTSYAGGI---QSPAAALPQLGNLPSVHGSVLNSREQLMNSLENDSVVSGIRFGQATNSEQ-NIVGSVNSSQIPSLAATGEPRTLEEHGHHP--AQTNGSHPIQSGNNQTPRIESHGWLGPPTQKVEPSNFVPMPGQSHGYGPW-GVISPQAQNPTGNFATTGAPALPQPEFWGPPAQSNQPNMQTPAMPNLAWGTGLIENNSSASVLRSENSSTGWAPVQTNPNMGWTGVAPGTTNISWGATVQVPAPGSANHGWASASGNVGSSVQGQMPSNVISGWVAAPGN----------------------SGVQGMVLGGANPGWIAPGGNVGSAVQVPVPGN---GWAMQTGNQGAPVQVAPSGNTSQGWGAPPGNQGTWGSSGQKDKGSQVGDSGFGDSRPKGPQVGDSGYGNRRPWNRQSSFGSRGRVPDRYSAPRDVLCPYNTNGKCRKGSHCNYIH 1935
Match: A0A6A4KWX7 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9447258.1}) (Fragment))
HSP 1 Score: 1102.04 bits (2849), Expect = 0.000e+0
Identity = 791/1907 (41.48%), Postives = 1011/1907 (53.02%), Query Frame = 0
Query: 74 FSDGVEVEAGELERKDELSGEIEVSGVGVD------ASGIEVRDDKDDEIEGEVLYDTVRGDDKNDELEGEVVAEKKDELQ-GNYGCQVAKEGEVEGNGVDEGEI--LGDNDQVEDKDVCEDGFDDKQNVCVQVVAEKKDE---LEVEGGMNVGEEAGDKVVPESEIKDEAGVELQAGAVCEEVKAEELKGDCGTEVVGEALCEVGNEAENKSEIETEMKVSR-EPVKNVDDMVEEEKVEMGYV----SSQSLNEVEERAANIEDNAEHSSGLIGLAEDTVMEEKNLVMESVNKKRDDELDSAPESDDEEDIMETGREYDEDKFEGEVPQPDGDSQLAEDEEDIMETEREFDEDKFEGEVPQPDGDSQL-AEDEED-ERLVGDEEIPAADVEMETETDAGELVKI-----SGGKRKRGKNTKAAGKAQPLNMVGLPVEEEDVCFVCFDGGDLVLCDR------KNCPKAYHASCVNRNEKFFQAKGRWNCG----------------------------------------------------CIKDAVILCVRGNKGFCEACIKIVMMIEDNAQ-GSQAQIDFDDKSSWEYLFKDYWIDLKESLSISPVEIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKKRKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMRDGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVGHFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIK-SGKDRKRKTRKKDGRERQSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSDKVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEILNLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEVQVARVND------------------------------WLESEVQRLTHLRDRASDLGKKKQYPLL---------------------------------------ECVESLQLLRTPEERRRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGREPISPGSGDAK--ESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVSADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQKS--PASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGYFPSDLRIWSSSGNKDDSLLLTDALAGKF--QKLLP---DNGIPNSNNLHNPHL-------PPLHSLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADGTNSNHNGRNNLVNLPSPTPKQRSSGEAGRPIGGVSLPGSIE-------------ALQSPAAATP----DSTRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTISLPNPQSTVAS-LHGGQNVSHPFIAPET-NANIVQSVTA------NNPALGTQNWAGAPTQSLEANSSIQASTQQPVYAQWSGVQSTPVQNPSINFPVQGVPQV--PNSWRPPMQT-NQTNMQ----PNVQWGTGIADNSASQNLQPDNPNSGWASMQVSPNIGWSGPNP---NMNWMASVQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQ---PGNAVGVVQMLGPMNANQGWYSNMAASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANTGWSAPS--------------GNANQGWGPLA-GNQG--NNRSQHHRIGDKFSSQKDQGSQPGRNWNKPSSFGGGGGGPRHGGSR----------------GICYMFQDTGHCKRGDSCSFRHS 1740
+S V V A LE + SG G D E+ D + ++GEV+ V E E + E DELQ G C A E V GEI +G E++++ E F + V + D+ + VEGG++ E D V + + GVE+ AG + EL + + +G + E +E E+ + E VS+ EP + ++ + + G V S Q NE+E +E+ E L G + V E + + V +A E +D+E +M+ G+S L ED E E E E + VP D + AED ED E ++E P D EMETET+ GE + GGKRKRGK TK K P V EDVCF+CFDGGD+VLCDR + CPKAYH SCVNR+E FF+AKGRWNCG CIK++V CVR NKGFCE C+K VM+IE+N + G + +++FDDKSSWEYLFKDYW DLK LS+S E+A+AKNPWKGS + A K ESP E D D G G++++ + ++ KR+ +K+ TK+++S S + A S P +TEWASKELLEFVMHM+DGD +VLSQFDVQALLLEYIK NKLRDPR+KSQIICD+RLEN+FGKARVGHFEMLKLLESHFL+KED+Q DDVQGSVVD NH++ADG + K S R++ RK D R QSNL DYAAIDIHNISLIYLRRKL+EDLLEDIE F DKV TFVRIRISGSNQ QD+YRLVQV GT K + YKVGK+TT+L++EILNLNK EV+SID+ISNQEFTEDECKRLRQSIKCG I +TVG I DK+ME+Q ARVND WLE+E RL+HLRDRASD+G+KK+YP L ECVE LQLL+TPEER RRLE++P+IHADPKMDP + SE+ D+E++ +KQE ++RP+GSGF+R GREPISP G+ +S + +R SSGK WE NRN+S+K+ E+A + +N WN GR E ++K + T+SE G + S ARS+S S + ++ P+ A VA I+E +KIWHYQDP GK+QGPFS+ QLRKW++ GYFP DLRIW ++ +DDSLLL DALAG+F +K LP +N + +PHL P SLH +E +L S+S WA SVE+P SAD S++ RN+ NLPSPTP + G P S+ S+ A++S +TP S R + SE S S + +QG +G+T +LP Q+ + S HG Q P + + A VQ+ N TQ W GA Q+ E N S+ P Y QW GV ST +QNP+ NF Q P P+ WRPP+ T NQ N+Q PNV WG G+A N+A +Q +N N+ W M +PN+GW GP P NMNW A VQG +N GWV G+ G QG PGN+N GW PQ PG+ + P N G G P NGN G AP N G NVQGQ PGN N W P+ GN+N GWG A GN G + QH+R + FS Q+D+ GG GGG R +R +C + GHCK+G C H+
Sbjct: 79 YSPLVVVSASPLEETGTSDAAVSDSGFGDDKEVEVGVEETEIPTDCNLRLDGEVVEAEVEVSTSRGEWESKCEVEGVDELQLGGVNCPNANE-------VAAGEIPPVGSGMDWENENLVETKFVGEVESSVGAFVSELDDSQVVGVEGGVSKSEPGLDDV----KSTNVDGVEVGAGEILRGGSEMELGNEVEMKGLGGGVGEFVSEFEDSQLLGVEGGVSKCEPGLDESELADVKSPIAGEVVVDGSLQGGNEME-----LENEVEMKE-LGGGVGEFVSELDDSQVLGVGLAV-----AAKEDEDKEAVMK------------------GESGL-EDTEMEKELEAEVTNEGRSTSVPLLDNSQSVDAEDNEDNEGAEAEDEAPMVDTEMETETEVGETPEADKGASGGGKRKRGKVTKVPAKPPPRKKV----IGEDVCFICFDGGDMVLCDRSLVLGFRGCPKAYHPSCVNRDEAFFRAKGRWNCGSLSDNVAYAILISWNLLFDLSYLWISGWHLCSHCGKNAHYMCYTCTFSLCKACIKESVFFCVRANKGFCETCMKTVMLIENNERAGEEDRVNFDDKSSWEYLFKDYWEDLKAKLSLSADELAEAKNPWKGSDVLAGKQESPEEVFDATKDQGSGSESSEN--MVTRRAKRRKAKKKSKSLTKEEDSPSSRVVIDAVGASIPSNTEWASKELLEFVMHMKDGDNSVLSQFDVQALLLEYIKRNKLRDPRKKSQIICDSRLENLFGKARVGHFEMLKLLESHFLVKEDSQPDDVQGSVVDNVVNHMEADGTADAPTKGSKDRRRKMRRKGDLRGPQSNLGDYAAIDIHNISLIYLRRKLVEDLLEDIEKFHDKVFGTFVRIRISGSNQNQDMYRLVQVVGTRKGAEPYKVGKKTTDLVLEILNLNKTEVVSIDTISNQEFTEDECKRLRQSIKCGLIERLTVGDILDKSMEIQAARVNDCLGDGDYEERVFLSGFCYKVRCMILFVKMQWLETETVRLSHLRDRASDMGRKKEYPFLLVYEALMHFICNWVIGSSMDSAVGVDRIANLNLLTFTLRECVEKLQLLKTPEERMRRLEEVPKIHADPKMDPSYESEEEDTEMEDNKQENFSRPQGSGFNRIGREPISPRRGNFSPVDSGSSTRTSSGKNWETNRNISNKDFPIKSEEATAVDEIKNENVWNQGRDREAN----MDKVHLGTNSETIGRDSRSFARSESFSGAAASETLQPSLAAAGVAETATKINESEKIWHYQDPAGKIQGPFSLVQLRKWNSNGYFPVDLRIWRTTEKQDDSLLLKDALAGRFFQKKELPPMDNNSTVPPQTVQSPHLSSTPAGMPYGASLHHRKEGGVRSRLEP------------SSSSGWATPSVEVPKGSADRLGSDYR-RNDSTNLPSPTPMSSTPRWTGGPTHSPSVATSVSSGQFTQSGSKEHAAMESLGVSTPLSVLSSGRESIRGSENDSSSS---LLVPRSEQQGIYVGTTTALPASQTILTSESHGIQ----PSVETQQWGAGSVQTQEMGAAPHQNAGTETTQTWGGAAAQNSEPNPSL------PAYGQWGGVPST-IQNPTGNFSTQVFPAFPQPDPWRPPVVTNNQPNIQPAAPPNVPWGMGVAQNNAFPPVQ-NNVNTVWVPMPGNPNMGWVGPAPGATNMNWGAPVQGT----INPGWVATTGNPGAMVQGIPPGNVNPGWAPQTVNPGSGI-------PQVGNPG---------SGIQPANGNPGWVAPTGNTGYNVQGQAPGNVNPVWGTPNGNPGTATVQGPAAPGNSNPGWGSSAPGNSGMRGDDKQHNR-NNSFSGQRDR--------------GGFGGGERWNNTRQSSFGSGSGGGLKGPNTVC-PYHKHGHCKKGTYCDMLHT 1870
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7C1L2 | E-Value: 0.000e+0, PID: 52.48 | (Putative zinc finger CCCH domain-containing prote... [more] |
| A0A5B7BZQ5 | E-Value: 0.000e+0, PID: 51.28 | (Putative zinc finger CCCH domain-containing prote... [more] |
| A0A5B7BYP9 | E-Value: 0.000e+0, PID: 51.02 | (Putative zinc finger CCCH domain-containing prote... [more] |
| A0A5B7C1M5 | E-Value: 0.000e+0, PID: 50.95 | (Putative zinc finger CCCH domain-containing prote... [more] |
| A0A2R6RHH7 | E-Value: 0.000e+0, PID: 49.24 | (Zinc finger CCCH domain-containing protein {ECO:0... [more] |
| A0A2R6R6T2 | E-Value: 0.000e+0, PID: 43.98 | (Zinc finger CCCH domain-containing protein {ECO:0... [more] |
| A0A7J0EVU7 | E-Value: 0.000e+0, PID: 48.27 | (GW repeat-and PHD finger-containing protein NERD ... [more] |
| A0A834GDS6 | E-Value: 0.000e+0, PID: 48.10 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7127... [more] |
| A0A6P6WA77 | E-Value: 0.000e+0, PID: 47.20 | (zinc finger CCCH domain-containing protein 19 {EC... [more] |
| A0A6A4KWX7 | E-Value: 0.000e+0, PID: 41.48 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9447... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
