Resource Type:
Polypeptide
Name:
DCAR_020864
Identifier:
DCAR_020864.mRNA-protein
Sequence:
MTKTPLIPLLVVLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHS
GFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVV
DSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMD
VRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRN
KRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQF
IRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIG
ETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAAR
NLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASL
AFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL*
Sequence Length:
441
Sequence Checksum:
79018d9f3bcb1c10757378f427f83fc2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_020864, derives from mRNA, DCAR_020864. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1P555 ((Lung seven transmembrane receptor family protein {ECO:0000313|EMBL:PWA80879.1}))
HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 370/432 (85.65%), Postives = 404/432 (93.52%), Query Frame = 0
Match: A0A2U1P555 ((Lung seven transmembrane receptor family protein {ECO:0000313|EMBL:PWA80879.1}))
HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 370/432 (85.65%), Postives = 404/432 (93.52%), Query Frame = 0
Query: 9 LLVVLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
L VVL+ L +P+ E+K+LKI +D RPMIL EKFGFTH+GFVS++++ VSVTS+LSQPDPSRLGFFLLSEES+IQVLLE+QQNPNFCVVDSH+I+LLFTFRDL+PPPHSSFNKSYPV+ PNEYSLFFANC PES V+MDVRTE+YN D+G T KDYL AGLTQLP LY F++VY+AF+G W C++NKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+ASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASLAFY+VMFYMFRPVE+NEYFVLDDE+EEAAE+ALRDEEFEL
Sbjct: 4 LTVVLLLFALTITPSTAEIKSLKIRSDNRPMILLEKFGFTHTGFVSVAISAVSVTSSLSQPDPSRLGFFLLSEESMIQVLLEIQQNPNFCVVDSHFITLLFTFRDLSPPPHSSFNKSYPVTYPNEYSLFFANCNPESLVTMDVRTELYNTDDGNT-KDYLSAGLTQLPGLYFVFSLVYLAFVGVWVSICLKNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSSAAEEIASLAFYLVMFYMFRPVEKNEYFVLDDEDEEAAELALRDEEFEL 434
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251SQQ6 ((Putative lung seven transmembrane receptor family protein {ECO:0000313|EMBL:OTG01168.1}))
HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0
Identity = 369/423 (87.23%), Postives = 397/423 (93.85%), Query Frame = 0
Match: A0A251SQQ6 ((Putative lung seven transmembrane receptor family protein {ECO:0000313|EMBL:OTG01168.1}))
HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0
Identity = 369/423 (87.23%), Postives = 397/423 (93.85%), Query Frame = 0
Query: 18 LLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
LL P+ E+K+LKI +D RPMILFEKFGFTH+GF S++++ VSVTS+LSQPDP+RLGFFLLSEESLIQVLLELQQNPNFCVVDS +ISLLFTFRDL+PPPHSSFNKSYPV+ PNEYSLFFANC PES V+MDVRTE+YN DNG KDYL AGLTQLPSLY F+IVY+ FLGFW C++NKRSVHRIHLLMGGLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+ASIVIGETGPFI+DWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASL FY+VMFYMFRPVE+NEYFVLDDE+EEAAEMALRDEEFEL
Sbjct: 17 LLTVPSTAEIKSLKIRSDNRPMILFEKFGFTHTGFASVAISSVSVTSSLSQPDPARLGFFLLSEESLIQVLLELQQNPNFCVVDSKFISLLFTFRDLSPPPHSSFNKSYPVTYPNEYSLFFANCNPESLVTMDVRTELYNTDNGA--KDYLSAGLTQLPSLYFIFSIVYLCFLGFWISLCLKNKRSVHRIHLLMGGLLIMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASIVIGETGPFIRDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSSAAEEIASLVFYLVMFYMFRPVEKNEYFVLDDEDEEAAEMALRDEEFEL 437
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6K334 ((Uncharacterized protein {ECO:0000313|EMBL:PLY69482.1}))
HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0
Identity = 369/432 (85.42%), Postives = 402/432 (93.06%), Query Frame = 0
Match: A0A2J6K334 ((Uncharacterized protein {ECO:0000313|EMBL:PLY69482.1}))
HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0
Identity = 369/432 (85.42%), Postives = 402/432 (93.06%), Query Frame = 0
Query: 9 LLVVLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
L+ VL+ + +PT E+K+LKI +D RPMILFEKFGFTH+G+VS++++ VSVTS+L+QPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDS +ISLLFTFRDL+PPP SSFNKSYPV+ PNEYSLFFANC P+S V+MDVRTE+YN D+G TTKDYL AGLTQLPSLY F+++Y+ FLGFW C +N+RS HRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+ASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASL FYMVMFYMFRPVE+NEYFVLDDE+EEAAEMALRDEEFEL
Sbjct: 8 LIAVLLLVFISTAPTTAEIKSLKIRSDNRPMILFEKFGFTHTGYVSVAISSVSVTSSLAQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSKFISLLFTFRDLSPPPQSSFNKSYPVTYPNEYSLFFANCNPQSIVTMDVRTELYNTDDG-TTKDYLSAGLTQLPSLYFIFSLIYLCFLGFWISICFKNQRSFHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEEIASLVFYMVMFYMFRPVEKNEYFVLDDEDEEAAEMALRDEEFEL 438
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7NTM0 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4101540.1}))
HSP 1 Score: 749.584 bits (1934), Expect = 0.000e+0
Identity = 371/433 (85.68%), Postives = 402/433 (92.84%), Query Frame = 0
Match: A0A6S7NTM0 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4101540.1}))
HSP 1 Score: 749.584 bits (1934), Expect = 0.000e+0
Identity = 371/433 (85.68%), Postives = 402/433 (92.84%), Query Frame = 0
Query: 12 VLIAAVLL----PSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
+LIA LL +PT E+K+LKI +D RPMILFEKFGFTH+G+VS++++ VSVTS+L+QPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDS +ISLLFTFRDL+PPP SSFNKSYPV+ PNEYSLFFANC P+S V+MDVRTE+YN D+G TTKDYL AGLTQLPSLY F+++Y+ FLGFW C +N+RS HRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+ASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASL FYMVMFYMFRPVE+NEYFVLDDE+EEAAEMALRDEEFEL
Sbjct: 7 ILIAVFLLVFISTAPTTAEIKSLKIRSDNRPMILFEKFGFTHTGYVSVAISSVSVTSSLAQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSKFISLLFTFRDLSPPPQSSFNKSYPVTYPNEYSLFFANCNPQSIVTMDVRTELYNTDDG-TTKDYLSAGLTQLPSLYFIFSLIYLCFLGFWISICFKNQRSFHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEEIASLVFYMVMFYMFRPVEKNEYFVLDDEDEEAAEMALRDEEFEL 438
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XH29 ((Transmembrane receptor, eukaryota {ECO:0000313|EMBL:KVH90584.1}))
HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0
Identity = 364/429 (84.85%), Postives = 401/429 (93.47%), Query Frame = 0
Match: A0A103XH29 ((Transmembrane receptor, eukaryota {ECO:0000313|EMBL:KVH90584.1}))
HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0
Identity = 364/429 (84.85%), Postives = 401/429 (93.47%), Query Frame = 0
Query: 12 VLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
VL+ L +P++GE+K+LKI +D RPMILFEKFGFTH+GFVSI+++ VSVTSTLSQPDPSRLGFFLLSEES IQVLLELQQNPNFCVVDS +I+ LFTFRDL+PPP SSFN++YPV+ PNEYSLFFANC P+S V+MDV TE+YN D+G +TKDYL AGLTQLPSLY F+++Y++FLGFW C +N+RSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+ASIVIGETGPFI+DWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWV+ AAEE+ASL FYMVM+YMFRPVE+NEYFVLDDE+EEAAEMALRDEEFEL
Sbjct: 11 VLLFFFLFTAPSMGEIKSLKIRSDNRPMILFEKFGFTHTGFVSIAISSVSVTSTLSQPDPSRLGFFLLSEESQIQVLLELQQNPNFCVVDSKFIARLFTFRDLSPPPQSSFNRTYPVTHPNEYSLFFANCNPQSLVTMDVHTELYNTDDG-STKDYLSAGLTQLPSLYFIFSLIYLSFLGFWISICFKNQRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASIVIGETGPFIRDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVANAAEEIASLVFYMVMYYMFRPVEKNEYFVLDDEDEEAAEMALRDEEFEL 438
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PWT5 ((Uncharacterized protein {ECO:0000313|EMBL:PSR98228.1}))
HSP 1 Score: 729.169 bits (1881), Expect = 0.000e+0
Identity = 348/426 (81.69%), Postives = 386/426 (90.61%), Query Frame = 0
Match: A0A2R6PWT5 ((Uncharacterized protein {ECO:0000313|EMBL:PSR98228.1}))
HSP 1 Score: 729.169 bits (1881), Expect = 0.000e+0
Identity = 348/426 (81.69%), Postives = 386/426 (90.61%), Query Frame = 0
Query: 17 VLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTL--SQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
++L PT E+K+LKI+ DARPMILFEKFGFTH+G V+I+V+ V VTS+L S DP+RLGFFLLSEESLIQVL+ELQQNP+FCV+DS YI LF FRDL+PP +S+N SYPV+ PNEYSLFFANC PESQV+M+VRTEVYN D G+ +DYL AGLTQLP+L+ F+I Y AFLGFW C NKRSVHRIHLLM GLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIR+VLLFTVIVLIGTGWSFLKPFLQ+KEKKVLMIVIPLQVLAN+AS+VIGETGPFIKDWVTWNQVFLLVDI+CCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS A EE+ASLAFY+VMFYMFRPVE+NEYFVL+D EEEAAEMALRDE+F+L
Sbjct: 13 LILALPTAAEIKSLKITADARPMILFEKFGFTHAGHVTITVSAVLVTSSLPASVADPTRLGFFLLSEESLIQVLIELQQNPSFCVLDSKYIKFLFNFRDLSPPSQTSYNHSYPVTAPNEYSLFFANCVPESQVTMNVRTEVYNLD-AGSVRDYLSAGLTQLPTLFFLFSISYFAFLGFWIYICFTNKRSVHRIHLLMAGLLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRIVLLFTVIVLIGTGWSFLKPFLQDKEKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIVCCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNATEEIASLAFYIVMFYMFRPVEKNEYFVLNDGEEEAAEMALRDEDFDL 437
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6N261 ((Uncharacterized protein {ECO:0000313|EMBL:KAD4384379.1}))
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 356/419 (84.96%), Postives = 387/419 (92.36%), Query Frame = 0
Match: A0A5N6N261 ((Uncharacterized protein {ECO:0000313|EMBL:KAD4384379.1}))
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 356/419 (84.96%), Postives = 387/419 (92.36%), Query Frame = 0
Query: 22 PTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
P E+K+LKI +D RPMILFEKFGFTH+G V+IS++ VSVTS+LSQPDPS LGFFLLSEESLIQVL+ELQQNP FCVV+S +I L TFRDL+PPPHSSFN SYPV+LPNEYSLFFANC PES V+MDVRTE+YN D+G KDYL AG TQLPS+Y F++VY+ FLGFW C +N+RSVHRIHLLMGGLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQE+EKKVLMIVIPLQVLAN+ASIVIGETGPFIKDW+TWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASL FY+VMFYMFRPVE+NEYFVLDDE+EEAAEMALRDEEFEL
Sbjct: 20 PATAEIKSLKIRSDNRPMILFEKFGFTHTGVVTISISSVSVTSSLSQPDPSHLGFFLLSEESLIQVLIELQQNPTFCVVNSKFIKRLLTFRDLSPPPHSSFNNSYPVTLPNEYSLFFANCNPESLVTMDVRTELYNTDDGA--KDYLSAGQTQLPSIYFIFSLVYLCFLGFWISLCFKNQRSVHRIHLLMGGLLIMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANVASIVIGETGPFIKDWMTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSSAAEEIASLVFYLVMFYMFRPVEKNEYFVLDDEDEEAAEMALRDEEFEL 436
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AT65 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58611.1}) (Fragment))
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 369/438 (84.25%), Postives = 406/438 (92.69%), Query Frame = 0
Match: A0A5B7AT65 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58611.1}) (Fragment))
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 369/438 (84.25%), Postives = 406/438 (92.69%), Query Frame = 0
Query: 3 KTPLIPLLVVLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
K P +P VVL+ LL +P E+K LKI+ D RPMILFEKFGFTH+G VS++V+ VSVTSTL++PDPSRLGFFLLSEESLIQVL+ELQQNP+FCV+DS YI LLFTFRDL+PPPH+SFN+SYPV+ PNEYSLFFANCAPESQV+MDVRTEV+N+D GG KDYLPAGLT+LP+L+ F+++YIAFLGFW C +NKRS HRIHLLM GLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+AS+VIGETGPFI+DWVTWNQVFLLVDI+CCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASLAFY+VMFYMFRPVERNEYFVLD+EEEEAAEMALRDEEFEL
Sbjct: 23 KMPKMPHAVVLLLFALLLTPITAEIKNLKITADPRPMILFEKFGFTHTGHVSVAVSSVSVTSTLARPDPSRLGFFLLSEESLIQVLIELQQNPSFCVLDSKYIKLLFTFRDLSPPPHTSFNQSYPVTAPNEYSLFFANCAPESQVTMDVRTEVFNFDAGGV-KDYLPAGLTKLPTLFFLFSLIYIAFLGFWIYICYKNKRSFHRIHLLMAGLLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASVVIGETGPFIRDWVTWNQVFLLVDIVCCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEEIASLAFYLVMFYMFRPVERNEYFVLDEEEEEAAEMALRDEEFEL 459
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AP88 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58612.1}))
HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0
Identity = 361/420 (85.95%), Postives = 395/420 (94.05%), Query Frame = 0
Match: A0A5B7AP88 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58612.1}))
HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0
Identity = 361/420 (85.95%), Postives = 395/420 (94.05%), Query Frame = 0
Query: 21 SPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
P E+KTLKI+ D RPMILFEKFGFTH+G VS++V+ VSVTS+L++PDPS LGFFLLSEESLIQVLLE QQNP+FCV+DS YISLLFTFRDL+PPPH+SFN+SYPV+ PNEYSLFFANCAPESQV+MDVRTEV+N+D GG KDYLPAGLT+LP+L+ F+++YIAFLGFW C +NKRS HRIHLLM GLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+AS+VIGETGPFI+DWVTWNQVFLLVDI+CCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASLAFY+VMFYMFRPVERNEYFVLD+EEEEAAEMALRDEEFEL
Sbjct: 18 GPITAEIKTLKITADPRPMILFEKFGFTHTGHVSVAVSSVSVTSSLARPDPSHLGFFLLSEESLIQVLLEFQQNPSFCVLDSKYISLLFTFRDLSPPPHTSFNRSYPVTAPNEYSLFFANCAPESQVTMDVRTEVFNFDAGGV-KDYLPAGLTKLPTLFFLFSLIYIAFLGFWIYICYKNKRSFHRIHLLMAGLLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASVVIGETGPFIRDWVTWNQVFLLVDIVCCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEEIASLAFYLVMFYMFRPVERNEYFVLDEEEEEAAEMALRDEEFEL 436
BLAST of DCAR_020864 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7APS5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58609.1}) (Fragment))
HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 368/438 (84.02%), Postives = 406/438 (92.69%), Query Frame = 0
Match: A0A5B7APS5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58609.1}) (Fragment))
HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 368/438 (84.02%), Postives = 406/438 (92.69%), Query Frame = 0
Query: 3 KTPLIPLLVVLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
K P +P VVL+ LL +P E+K LKI+ D RPMILFEKFGFTH+G VS++V+ VSVTSTL++PDPSRLGFFLLSEESLIQVL+ELQQNP+FCV+DS YI LLFTFRDL+PPPH+SFN+SYPV+ PNEYSLFFANCAPESQV+MDVRTEV+N+D GG KDYLPAGLT+LP+L+ F+++Y+AFLGFW C +NKRS HRIHLLM GLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+AS+VIGETGPFI+DWVTWNQVFLLVDI+CCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASLAFY+VMFYMFRPVERNEYFVLD+EEEEAAEMALRDEEFEL
Sbjct: 23 KMPKMPHAVVLLLFALLLTPITAEIKNLKITADPRPMILFEKFGFTHTGHVSVAVSSVSVTSTLARPDPSRLGFFLLSEESLIQVLIELQQNPSFCVLDSKYIKLLFTFRDLSPPPHTSFNQSYPVTAPNEYSLFFANCAPESQVTMDVRTEVFNFDAGGV-KDYLPAGLTKLPTLFFLFSLIYLAFLGFWIYICYKNKRSFHRIHLLMAGLLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASVVIGETGPFIRDWVTWNQVFLLVDIVCCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEEIASLAFYLVMFYMFRPVERNEYFVLDEEEEEAAEMALRDEEFEL 459
| Match Name | Stats | Description |
|---|---|---|
| A0A2U1P555 | E-Value: 0.000e+0, PID: 85.65 | (Lung seven transmembrane receptor family protein ... [more] |
| A0A251SQQ6 | E-Value: 0.000e+0, PID: 87.23 | (Putative lung seven transmembrane receptor family... [more] |
| A0A2J6K334 | E-Value: 0.000e+0, PID: 85.42 | (Uncharacterized protein {ECO:0000313|EMBL:PLY6948... [more] |
| A0A6S7NTM0 | E-Value: 0.000e+0, PID: 85.68 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4101... [more] |
| A0A103XH29 | E-Value: 0.000e+0, PID: 84.85 | (Transmembrane receptor, eukaryota {ECO:0000313|EM... [more] |
| A0A2R6PWT5 | E-Value: 0.000e+0, PID: 81.69 | (Uncharacterized protein {ECO:0000313|EMBL:PSR9822... [more] |
| A0A5N6N261 | E-Value: 0.000e+0, PID: 84.96 | (Uncharacterized protein {ECO:0000313|EMBL:KAD4384... [more] |
| A0A5B7AT65 | E-Value: 0.000e+0, PID: 84.25 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5861... [more] |
| A0A5B7AP88 | E-Value: 0.000e+0, PID: 85.95 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5861... [more] |
| A0A5B7APS5 | E-Value: 0.000e+0, PID: 84.02 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5860... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |