Resource Type:
Polypeptide
Name:
DCAR_021014
Identifier:
DCAR_021014.mRNA-protein
Sequence:
MATIEFQEKKRWGDLSKVYTRKKHNKRFKNCDTGAVEPATSSATPVNEAV
STETITDITNNQEKVGVEKGGDSVQERPLELDLAEKDGNSTSQVEEVPKN
LSPLNGVSDGLSNENQPQEGDNSTNKLQEVPNGNAVINPVVVRVDDRVRI
NFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAP
VGAAAYSLSQHSENNERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNG
FASVRENDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSH
AFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPP
ETNKKVKSNGRRKHGQLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVF
NEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTF
RNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPELIFDMNHYGGLP
TPMSRKVVPTPPSSQPIFPERDLDRSEYMPEPVEFRPKPFVVPSVKTPVP
KKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQ
DDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELAQARAEAQKSI
HAPNLDPAFTVAAEESKAGDTRVATKSLVQAEKQGGDVSSSSSSSTSDSD
SSSSDSDSDSSSAQGSDGD*
Sequence Length:
720
Sequence Checksum:
389b92e79df66b39a34cebe42fc19091
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_021014, derives from mRNA, DCAR_021014. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ABF0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8526777.1}))
HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 345/689 (50.07%), Postives = 431/689 (62.55%), Query Frame = 0
Match: A0A5J5ABF0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8526777.1}))
HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 345/689 (50.07%), Postives = 431/689 (62.55%), Query Frame = 0
Query: 1 MATIEFQEKKRWGDLSKVYTRKKHNKRFKNCDTGAVEPATSSATPVNEAVSTETITDITNNQEKVGVEKGGDSVQERPLELDLAEKDGNSTSQVEEVPKNLSPLNGVSDGLSNENQPQEGDNSTNKLQEVPNGNAVINPVVVRVDDRVRINFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAPVGAAAYSLSQHSENNERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNGFASVRENDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSHAFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPP-ETNKKVKSNGRRKH-GQLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVFNEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTFRNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPELIFDMNHYGGLPTPMSRKVVPTPPSSQPIFPERDLDRSEYMPEPVEFRPKPF-VVPSVKTPVPKKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQDDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELA-QARAEAQKSIHAPNLDPAFTVAAEESKAGDTRVATKSLVQAEKQG 685
+ + +EK RWGD +KVYTRK HNK KN +T S+ N +ST T + +N +P LA ++ NS+ Q + LS L+ SD S+ N P + ST +E PNGN I P + +VD+RVRIN AA S+++I ELRRKL+ ELDQVRS++K+L+AKE+ L+ S AAA GA AY+ SQ S N V+ G L+RVNSE+ SV + +S +F+HL+VSV +NN HG E++EKEKRTPKANQYYRNSDFLL K+RLPP E+NKK+K+N +KH G++ Y +D++ +QA KSC LL +LMKHKHGWVFN PV+A+AL LHDYHDIIKHPMDLGT+KS+LA YKSPREFA+DVRLTFRNA YNP G DVHIMA+ L IFE+RWAVIEA+YNP+ ++M GL TP SRK P P +P R LDRSE M V+ + K P + PV KKPKAKD +KRDMTF+EK++LS NL+ LP EKL+++VQIIK NS L Q DDEIE+DIDS DAETLWELDRFVTNYKKSLSK +R+AELA QARAEA S+ A N PA + +E+K + VAT S VQ EKQG
Sbjct: 6 LGADDLREKHRWGDGNKVYTRKIHNKGLKNKNTSNNNATASTTANNNNIISTTTTDNNNDNNNNF----------PQPCSQTLATEEANSSQQQQ----TLSRLDAASDDSSSHNPPPQV--STPNGREPPNGNGAIKPFITKVDNRVRINLAAARSKNDILELRRKLVTELDQVRSLAKKLEAKELLLTEY-SAAAAAGAGADAYNHSQFS-----------------------------GNGVINRGG---------------LVRVNSEVGSVGHL------------------DSRSFQHLSVSVMENN---HGVGEFVEKEKRTPKANQYYRNSDFLLGKERLPPPESNKKLKTNRGKKHSGEMGYGFVMDKYTSQALKSCSNLLAKLMKHKHGWVFNTPVDAKALDLHDYHDIIKHPMDLGTVKSRLAKNWYKSPREFAEDVRLTFRNAMAYNPKGQDVHIMAELLLNIFEERWAVIEAEYNPDWRYEMVRDAGLLTPTSRKTHPFP---RPPPEMRSLDRSESMTMTVDSKLKQSNFAPVGRAPVLKKPKAKDPHKRDMTFEEKQRLSTNLQCLPSEKLDNIVQIIKNSNSALCQHDDEIEVDIDSVDAETLWELDRFVTNYKKSLSKNKRKAELALQARAEATNSVPAINPAPAIVKSPKETKTDEKNVATSSPVQDEKQG 609
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6MF73 ((Uncharacterized protein {ECO:0000313|EMBL:PLY98252.1}))
HSP 1 Score: 560.066 bits (1442), Expect = 0.000e+0
Identity = 325/640 (50.78%), Postives = 397/640 (62.03%), Query Frame = 0
Match: A0A2J6MF73 ((Uncharacterized protein {ECO:0000313|EMBL:PLY98252.1}))
HSP 1 Score: 560.066 bits (1442), Expect = 0.000e+0
Identity = 325/640 (50.78%), Postives = 397/640 (62.03%), Query Frame = 0
Query: 9 KKRWGDLSKVYTRKKHNKRFKNCDTGAVEPATSSATPVNEAVSTETITDITNNQEKVGVEKGGDSVQERPLELDLAEKDGNSTSQVEEVPKNLSPLNGVSDGLSNENQPQEGDNSTNKLQEVPNGNAVINPVVVRVDDRVRINFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAPVGAAAYSLSQHSENN--ERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNGFASVRENDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSHAFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPPETNKKVKSNGRRKHG-QLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVFNEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTFRNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPE----LIFDMNHYGGLPTPMSRKVVPTPPSSQPIFPERDLDRSEYMPEPVEFRPKPFVVPSVKTPVPKKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQDDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELAQ 641
K +WG+ +KVYTR RFK A SS T + +T T TN ++ Q +LA +D NS Q LSP+ VSD S + S N+ P GN VI PVVV V DRVRIN A +++EI ELR KL EL+QVR +S++L+ KE EL+ S A P AYS SQ+S N+ ERR +++VNSE+ + + VD LMR+NS++ S + RPFRQLNVSV +N +HG E++EKEKRTPKANQYYRNSDFLL KDRLPPETNK+ K+NG RKH + DY+S +R NQ FK+C LLQRLMKHKHGWVFNEPVNA+ LGLHDYHDIIKHPMD GTIKS+LA YKSP EFA+DVRLTF NA TYNP G DVH+MA+QLS IFE+RW+VIE++ NP+ +I+D N + + P + P R L RSE M P RPKP + P +TP PKKPKAKD NKR+MT++EK+KLS NL+SLP EKL+++VQIIKK+N+ L Q DDEIE+DIDS D ETLWELDRFVTNYKKSLSK+RRRAELAQ
Sbjct: 15 KSKWGEGNKVYTR-----RFKRIAKNTTAAAPSSPTTTDTVAATSPPTTRTNTSNPTSPPTASNNEQ------NLATEDANSEHQ-----HTLSPVVEVSDDHS-----VQIAASPNQ----PTGNGVIKPVVVIVGDRVRINLKAAKAKNEIIELREKLRAELNQVRRVSQKLEDKEAELT-TFSAVLAVPADVEAYSHSQYSGNDIIERRALLRVNSEMGT-----------------------------DFVDRRALMRLNSDMGSAPNT-DMRPFRQLNVSVVDN--------------------NHGVGEFVEKEKRTPKANQYYRNSDFLLGKDRLPPETNKRQKANGGRKHSKESDYSSGHERHRNQMFKNCNNLLQRLMKHKHGWVFNEPVNAKLLGLHDYHDIIKHPMDFGTIKSRLAQNFYKSPMEFAEDVRLTFYNAMTYNPKGQDVHVMAEQLSNIFEERWSVIESESNPDWRYGMIYDANTPTPTSRTPTSRKAPHFAHA----PSRTLYRSESMSLPFMNRPKPKIAPPSRTPAPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDNIVQIIKKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKSLSKHRRRAELAQ 574
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7P127 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4106952.1}))
HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0
Identity = 326/642 (50.78%), Postives = 399/642 (62.15%), Query Frame = 0
Match: A0A6S7P127 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4106952.1}))
HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0
Identity = 326/642 (50.78%), Postives = 399/642 (62.15%), Query Frame = 0
Query: 9 KKRWGDLSKVYTRKKHNKRFKNC--DTGAVEPATSSATPVNEAVSTETITDITNNQEKVGVEKGGDSVQERPLELDLAEKDGNSTSQVEEVPKNLSPLNGVSDGLSNENQPQEGDNSTNKLQEVPNGNAVINPVVVRVDDRVRINFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAPVGAAAYSLSQHSENN--ERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNGFASVRENDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSHAFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPPETNKKVKSNGRRKHG-QLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVFNEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTFRNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPE----LIFDMNHYGGLPTPMSRKVVPTPPSSQPIFPERDLDRSEYMPEPVEFRPKPFVVPSVKTPVPKKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQDDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELAQ 641
K +WG+ +KVYTR RFK +T A P++ +AT +T T TN ++ E +LA +D NS Q LSP+ VSD S + S N+ P GN VI PVVV V DRV+IN A S++EI ELR KL EL+ VR +S++L+ KE EL+ S A P YS SQ+S N+ ERR +++VNSE+ + + VD LMR+NS++ S + RPFRQLNVSV +N N HG E++EKEKRTPKANQYYRNSDFLL KDRLPPETNK+ K+NG RKH + DY+S +R NQ FKSC LLQRLMKHKHGWVFNEPVNA+ LGLHDYHDIIKHPMD GTIKS+LA YKSP EFA+DVRLTF NA TYNP G DVH+MA+QLS IFE+RW+VIE++ NP+ +I+D N + + P + P R L RSE M P RPKP + P +TP PKKPKAKD NKR+MT++EK+KLS NL+SLP EKL+++VQIIKK+N+ L Q DDEIE+DIDS D ETLWELDRFVTNYKKSLSK+RRRAELAQ
Sbjct: 35 KSKWGEGNKVYTR-----RFKRIAKNTTAAAPSSPTATDTVTVAATSPPTTRTNTSNPASPPTATNN------EQNLATEDANSEHQ-----HTLSPVVEVSDDHSVQIAV-----SPNR----PTGNGVIKPVVVIVGDRVKINLKAAKSKNEIIELREKLRAELNHVRRVSQKLEDKEAELT-TFSAVLAVPADVETYSHSQYSGNDIIERRALLRVNSEMGT-----------------------------DFVDRRALMRLNSDMGSAPNT-DLRPFRQLNVSVVDNNN-------------------HGVGEFVEKEKRTPKANQYYRNSDFLLGKDRLPPETNKRQKANGGRKHSKESDYSSGHERHRNQMFKSCNNLLQRLMKHKHGWVFNEPVNAKLLGLHDYHDIIKHPMDFGTIKSRLAQNFYKSPMEFAEDVRLTFYNAMTYNPKGQDVHVMAEQLSNIFEERWSVIESESNPDWRYGMIYDANTPTPTSRTPTSRKAPHFSHA----PSRTLYRSESMSLPFMNRPKPKIAPPSRTPAPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDNIVQIIKKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKSLSKHRRRAELAQ 597
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z0Y1 ((Putative transcription factor GTE4 {ECO:0000313|EMBL:MPA37752.1}))
HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0
Identity = 338/683 (49.49%), Postives = 425/683 (62.23%), Query Frame = 0
Match: A0A5B6Z0Y1 ((Putative transcription factor GTE4 {ECO:0000313|EMBL:MPA37752.1}))
HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0
Identity = 338/683 (49.49%), Postives = 425/683 (62.23%), Query Frame = 0
Query: 7 QEKKRWGDLSKVYTRKKHNK-RFKNCDTGAVEPATSSATPVNEAVSTETITDITNNQEKVGVEKGGDSVQERPLELDLAEKDGNSTSQVEEVPKNLSPLNGVSDGLSNENQPQEGDNSTNKLQEVPNGNAVINPVVVRVDDRVRINFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAPVGAAAYSLSQHSENNERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNGFASVRENDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSHAFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPP-ETNKKVKSNGRRKHGQLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVFNEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTFRNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPELIFDMNHYGGLPTPMSRKVVPTPPSSQPIFPERDLDRSE-YMPEPVEFRPKPF-VVPSVKTPVPKKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQDDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELA-QARAEAQKSIHAPNLDPAFTVAAEESKAGDTRVATKSLVQAEKQ 684
+EK RWG+ +KVYTRK HNK R + T + +T T T+ ++ + V + LA +D NS+ Q + LS L+ SD S++N P + S E PNGN V PV+ +VD RVRIN AA S+ EI ELRRKL++ELDQVRS K+L+AKEV+++G ++ YS SQ S ++ +++ L+R NSE+ SV + + RPF+QL+VSV E IN HG E++EKEKRTPKANQYYRNSDFLL K+RLPP E+NKKVKSNG++ G++ Y +D++ +QA KSC LL +LMKHKH WVFN PV+A+ALGLHDYHDIIKHPMDLGT+KS+LA YKSPREFA+DVR TF NA TYNP G DVHIMA+QLS IFE++WAVIEA+YN + ++M + GLPTP SRK P P R LDRS+ M PV+ R K P +TPVPKKPKAKD +KRDMTF+EK++LS NL+SLP EKL+++VQIIKK NS L Q DDEIE+DIDS DAETLWELDRFVTNYKKSLSK +R+AELA QARAEA ++ A N PA ++E+K + VAT S VQ EKQ
Sbjct: 12 REKHRWGEGNKVYTRKIHNKGRNNTTTSNNKNTTTDNNNNTTTTTTTTTTTNNNDDDDNNNVPQQSSQT--------LAAEDANSSQQ----QRTLSRLDAASDDSSSQNPPPQV--SAPNGHEPPNGNVVSKPVITKVDSRVRINLAAARSKYEIRELRRKLVSELDQVRSFVKKLEAKEVQVTGYSTS-------GGGYSHSQFSASD--------------------------------------------VINRGGLVRANSEVGSVGHL-DSRPFQQLSVSVIE-IN-------------------HGVGEFVEKEKRTPKANQYYRNSDFLLGKERLPPPESNKKVKSNGKKHGGEMGYRFGMDKYTSQALKSCSNLLAKLMKHKHAWVFNVPVDAKALGLHDYHDIIKHPMDLGTVKSRLAKNWYKSPREFAEDVRRTFHNAMTYNPKGQDVHIMAEQLSKIFEEKWAVIEAEYNVDWRYEMVYDVGLPTPTSRKTH-PPHPPIPAPEMRSLDRSQSMMTMPVDSRLKQSNSAPVGRTPVPKKPKAKDRDKRDMTFEEKQRLSTNLQSLPSEKLDNIVQIIKKSNSTLCQHDDEIEVDIDSVDAETLWELDRFVTNYKKSLSKNKRKAELALQARAEATHAVPAINPTPAIVKESKETKTDEKNVATSSPVQEEKQ 607
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A124SHS3 ((Bromodomain-containing protein {ECO:0000313|EMBL:KVI10456.1}))
HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0
Identity = 327/620 (52.74%), Postives = 404/620 (65.16%), Query Frame = 0
Match: A0A124SHS3 ((Bromodomain-containing protein {ECO:0000313|EMBL:KVI10456.1}))
HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0
Identity = 327/620 (52.74%), Postives = 404/620 (65.16%), Query Frame = 0
Query: 80 ELDLAEKDGNSTSQVEEVPKNLSPLNGVSDGLSNENQPQEG-DNSTNKLQEVPNGNAVINPVVVRVDDRVRINFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAPVGAAAYSLSQHSENN--ERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNGFASV-RE-NDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSHAFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPPETNKKVKSNGRRKHG-QLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVFNEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTFRNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPELIFDMNHYGGLPTPMSRKVVPTPPSSQPIF---PERDLDRSEYMPEPVEFRPKP--FVVPSVKTPVPKKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQDDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELA-QARAEAQKSIHA--PNLDPAFTVAAEESKAGDTRVATKSLVQAEKQG 685
E LA +D NS Q +NLSP+ VSD S +N+ E S N+ P N VI PV + VD RV+IN A S++EI ELR KL ELD+VR ++++L+ KE EL+ + G A YS SQ+S N+ ERR +++VNSE+ ME V RE +++D LMR+NSE+ SV + RPFR L+VSV +N +HG E++EKEKRTPKANQYYRNSDFLL KDRLPPE+NK+ K NG RKH + DY+ +R Q FKSC LLQRLMKHKHGWVFNEPVNA+ LGLHDYHDIIKHPMDLGTIKS+LA YKSPREFADDVRLTF NA TYNP G DVH+MA+QLS IFE+RW+VIE+++NP+ + M + PTP SRKV P F P R L RSE M P R KP F PS +TP+PKKPKAKD NKR+MT++EK+KLS NL+SLP EKL+++VQIIKK+N+ L Q DDEIE+DIDS D ETLWELDRFVTNYKKSLSK++R+AELA QAR A + A NL + A +E+KA + +A+ Q E++G
Sbjct: 77 EQTLATEDANSEKQ-----QNLSPVLEVSDDHSIQNRQLEVLAVSPNE----PTRNGVIKPVAILVDGRVKINVKAARSKNEIIELREKLRAELDRVRRLAQKLEDKEAELTAFSTVVGVGGDGEA-YSHSQYSGNDIVERRSLLRVNSEM--------------GTDFMERRALVRVDREMGSDVIDRRALMRLNSEVGSVAN-SDIRPFRPLSVSVVDN--------------------NHGVGEFVEKEKRTPKANQYYRNSDFLLGKDRLPPESNKRHKVNGGRKHSKESDYSIGHERHRTQMFKSCNNLLQRLMKHKHGWVFNEPVNAKQLGLHDYHDIIKHPMDLGTIKSRLAQNFYKSPREFADDVRLTFHNAMTYNPKGQDVHVMAEQLSNIFEERWSVIESEFNPDWRYGMIYDASTPTPTSRKV--------PHFAHAPPRTLYRSESMTLPFMTRQKPSKFAPPS-RTPMPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDNIVQIIKKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKSLSKHKRKAELAQQARVGAGNANQAVLENLATSIQQAPKENKANEKTLASTPPDQGERRG 642
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103Y492 ((Uncharacterized protein {ECO:0000313|EMBL:KVI02241.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 340/699 (48.64%), Postives = 426/699 (60.94%), Query Frame = 0
Match: A0A103Y492 ((Uncharacterized protein {ECO:0000313|EMBL:KVI02241.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 340/699 (48.64%), Postives = 426/699 (60.94%), Query Frame = 0
Query: 7 QEKKRWGDLSKVYTRKKHNKRFKNCDTGAVEPAT--SSAT-----PVNEAVSTETITDITNNQEKVGVEKGGDSVQERPLELDLAEKDGNSTSQVEEVPKNLSPLNGVSDGLSNENQPQEGDNSTNKLQEVPNGNAVINPVVVRVDDRVRINFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAPVGAAAYSLSQHSENN--ERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNGFASVRE--NDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSHAFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPPETNKKVKSNGRRKHG-QLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVFNEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTFRNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPELIFDMNHYGGLPTPMSRKVVPTPPSSQPIFPERDLDRSEYMPEPVEFRPKPF-VVPSVKTPVPKKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQDDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELA-QARAEAQKSIHAPNLDPAFTV--AAEESKAGDTRVATKSLVQAEKQGGDVS 689
+EK +WG +KVYTR+ K KN A T SSAT PV A + IT N Q L D N Q L V++ S+++ Q+ + VP GN V+ PVV VDDRV+I+ A+ S+++I ELR KL ELDQVRS+ ++L+ KE EL+ + AA + A YS SQ+ N +RR +++VNSE+ + M+ A V + +D LMRVNSE+ S+ Q+ R FRQLNVSV +N +S G E++EKEKRTPKANQYYRNSDFLL KDRLPPE+NK++KSNG RK+ + DY ++R NQ F+SC LLQRLMKHKHGWVFNEPVNA+ LGLHDYHDIIKHPMDLGTIKS+LA YK+P EFA+DVRLTF NA TYNP G DVH+MA+QLS IFE+RW VIE++YN + + H G PTP SRKV + P R LDRSE M P RPKP PS +TPV KPKAKD NKR+MT++EK+KLS NL+SLP EKL+++VQIIKK N+ L Q DDEIE+DIDS D ETLWELDRFVTNYKKSLSK+RR+AELA QARA A + +PA ++ A E +A + +A Q + +G +VS
Sbjct: 13 KEKSKWGGGNKVYTRRP-KKGIKNAAATATVSVTAVSSATTIPSSPVTTATAVSPITTANNEQT-------------------LTPDDANLRRQ--------QTLRRVAEA-SDDSSGQDLRQVVAEEAIVPTGNGVVRPVVTFVDDRVKIHLEASTSKNDIKELREKLTAELDQVRSLVQRLEDKEAELTNNSTLLGAAGIDEA-YSHSQYPGNVMIDRRALLRVNSEMGA--------------DYMDRRALARVHSEMRSDTIDRRALMRVNSEVGSLAN-QDTR-FRQLNVSVVDN-------------------NSLGAGEFVEKEKRTPKANQYYRNSDFLLGKDRLPPESNKRLKSNGGRKYSRESDYMIGLERQKNQVFRSCSNLLQRLMKHKHGWVFNEPVNAKQLGLHDYHDIIKHPMDLGTIKSRLAQNFYKNPSEFAEDVRLTFHNAMTYNPKGQDVHVMAEQLSNIFEERWTVIESEYNRDWRYGTIHGAGTPTPTSRKVHHFAHA-----PIRTLDRSEPMTLPYVSRPKPSNFAPSSRTPVQTKPKAKDPNKRNMTYEEKQKLSANLQSLPSEKLDNIVQIIKKSNTSLSQHDDEIEVDIDSVDVETLWELDRFVTNYKKSLSKHRRKAELAQQARALAGNANRTMLENPATSIPEAPTEKRAAEKSLAAIPANQGDIRGDNVS 641
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z3W0 ((Putative transcription factor GTE4 {ECO:0000313|EMBL:MPA37753.1}))
HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 336/684 (49.12%), Postives = 425/684 (62.13%), Query Frame = 0
Match: A0A5B6Z3W0 ((Putative transcription factor GTE4 {ECO:0000313|EMBL:MPA37753.1}))
HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 336/684 (49.12%), Postives = 425/684 (62.13%), Query Frame = 0
Query: 7 QEKKRWGDLSKVYTRKKHNK-RFKNCDTGAVEPATSSATPVNEAVSTETITDITNNQEKVGVEKGGDSVQERPLELDLAEKDGNSTSQVEEVPKNLSPLNGVSDGLSNENQPQEGDNSTNKLQEVPNGNAVINPVVVRVDDRVRINFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAPVGAAAYSLSQHSENNERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNGFASVRENDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSHAFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPP-ETNKKVKSNGRRKHGQLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVFNEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTFRNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPELIFDMNHYGGLPTPMSRKVVPTPPSSQPIFPERDLDRSE-YMPEPVEFRPKPF-VVPSVKTPVPKKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQDDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELA-QARAEAQKSIHAPNLDPAFTVAAEESKAGDTRVATKSLVQAEKQG 685
+EK RWG+ +KVYTRK HNK R + T + +T T T+ N+ + ++ + LA +D NS+ Q + LS L+ SD S++N P + S E PNGN V PV+ +VD RVRIN AA S+ EI ELRRKL++ELDQVRS K+L+AKEV+++G ++ YS SQ S ++ +++ L+R NSE+ SV + + RPF+QL+VSV E IN HG E++EKEKRTPKANQYYRNSDFLL K+RLPP E+NKKVKSNG++ G++ Y +D++ +QA KSC LL +LMKHKH WVFN PV+A+ALGLHDYHDIIKHPMDLGT+KS+LA YKSPREFA+DVR TF NA TYNP G DVHIMA+QLS IFE++WAVIEA+YN + ++M + GLPTP SRK P P R LDRS+ M PV+ R K P +TPVPKKPKAKD +KRDMTF+EK++LS NL+SLP EKL+++VQIIKK NS L Q DDEIE+DIDS DAETLWELDRFVTNYKKSLSK +R+AELA QARAEA ++ N PA A +E+K + V+T S +Q E QG
Sbjct: 12 REKHRWGEGNKVYTRKIHNKGRNNTTTSNNKNTTTDNNNNTTTTTTTTTTTNNNNDDXNNDDDDNNNNNVPQQSSQTLAAEDANSSQQ----QRTLSRLDAASDDSSSQNPPPQ--VSAPNGHEPPNGNVVSKPVITKVDSRVRINLAAARSKYEIRELRRKLVSELDQVRSFVKKLEAKEVQVTGYSTS-------GGGYSHSQFSASD--------------------------------------------VINRGGLVRANSEVGSVGHL-DSRPFQQLSVSVME-IN-------------------HGVGEFVEKEKRTPKANQYYRNSDFLLGKERLPPPESNKKVKSNGKKHGGEMGYRFGMDKYTSQALKSCSNLLAKLMKHKHAWVFNVPVDAKALGLHDYHDIIKHPMDLGTVKSRLAKNWYKSPREFAEDVRRTFHNAMTYNPKGQDVHIMAEQLSKIFEEKWAVIEAEYNVDWRYEMVYDVGLPTPTSRKTH-PPHPPIPAPEMRSLDRSQSMMTMPVDSRLKQSNSAPVGRTPVPKKPKAKDRDKRDMTFEEKQRLSTNLQSLPSEKLDNIVQIIKKSNSTLCQHDDEIEVDIDSVDAETLWELDRFVTNYKKSLSKNKRKAELALQARAEAIHAVPVMNPAPAVVEAPKETKTDERNVSTSSPIQEEMQG 616
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PTG7 ((Transcription factor like {ECO:0000313|EMBL:PSR96394.1}))
HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0
Identity = 334/691 (48.34%), Postives = 428/691 (61.94%), Query Frame = 0
Match: A0A2R6PTG7 ((Transcription factor like {ECO:0000313|EMBL:PSR96394.1}))
HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0
Identity = 334/691 (48.34%), Postives = 428/691 (61.94%), Query Frame = 0
Query: 5 EFQEKKRWGDLSKVYTRKKHNKRFKNCDTGAVEPATSSATPVNEAVSTETITDITNNQEKVGVEKGGDSVQERPLE-LDLAEKDGNSTSQVEEVPKNLSPLNGVSDGLSNENQPQEGDNSTNKLQEVPNGNAVINPVVVRVDDRVRINFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAPVGAAAYSLSQHSENNERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNGFASVRENDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSHAFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPP-ETNKKVKSNGRRKHG-QLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVFNEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTFRNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPELIFDMNHYGGLPTPMSRKVVPTPPSSQPIFPE-RDLDRSEYMPEPVEFRPKPFVVPSVKTPVPKKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQDDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELA-QARAEAQKSIHAPNLDPAFTVAAEESKAGDTRVATKSLVQAEKQGGDVSS 690
E +E+ RWG+ +KVYTRKK KN T + A ++ + T Q+ S Q P E L+ ++K L SD SN +QP + D E+P+ N P++V+VDDRVRI+ A S++EI EL+RKL++ELD+VRS++K+L+AKE++L+ + + G YS SQ+S N DG LMRVNSE+ SV + + R FRQL+VSV EN ++G E +EKEKRTPKANQYYRNS+FLL KDRLPP E+NKK+KSNG +KHG ++ Y + ++ ++ F SC LL RLMKHKH WVFN+PV+A+ALGLHDYHDIIKHPMDLGT+KS+LA YKSPREFA+DVRLTFRNA TYNP G DVH+MA++LS IFE++WAVIE++Y+ + F++ H GLPTP SR V P PP+ P E R L+R+E M V+ R KP P +TPVPKKPKAKD NKRDMT++EK++LS +L+SLP EKL+S+VQIIKKRN+ L Q DDEIE+DIDS DAETLWELDRFVTNYKKSLSK +R+AELA QARAEA ++ A N A A +ESKA + AT S Q E+QG +VS
Sbjct: 10 ETRERNRWGENNKVYTRKKG---LKNITTTSTAAAATTFIATTANNKNNNNDNKTVPQQ---------SSQTLPTEELNFSQKQ----------------LAVGSDDASNHDQPPQVDVPNG--CELPSRNGDSRPIIVKVDDRVRIHLAGGRSKNEIQELKRKLVSELDEVRSLAKRLEAKEIQLT-----SYSIAGGGGGYSHSQYSAN-----------------------------------------------DGRALMRVNSEVGSV-SHHDSRLFRQLSVSVVEN--------------------NYGVGELVEKEKRTPKANQYYRNSEFLLGKDRLPPAESNKKLKSNGGKKHGREMGYGFGLSKYISKIFNSCNNLLSRLMKHKHAWVFNKPVDAKALGLHDYHDIIKHPMDLGTVKSRLAKNWYKSPREFAEDVRLTFRNAMTYNPKGQDVHVMAEELSMIFEEKWAVIESEYSLDWRFELVHDAGLPTPTSRMVQPFPPAQPPPALEIRTLERAESMIMAVDSRLKP-SAPVGRTPVPKKPKAKDPNKRDMTYEEKQRLSTHLQSLPPEKLDSIVQIIKKRNTTLSQHDDEIEVDIDSVDAETLWELDRFVTNYKKSLSKNKRKAELALQARAEATTAVPATNPGSAVVEAPKESKADENNAAT-SPAQGERQGDNVSG 595
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z196 ((Putative transcription factor GTE4 {ECO:0000313|EMBL:MPA37751.1}))
HSP 1 Score: 539.265 bits (1388), Expect = 0.000e+0
Identity = 336/689 (48.77%), Postives = 425/689 (61.68%), Query Frame = 0
Match: A0A5B6Z196 ((Putative transcription factor GTE4 {ECO:0000313|EMBL:MPA37751.1}))
HSP 1 Score: 539.265 bits (1388), Expect = 0.000e+0
Identity = 336/689 (48.77%), Postives = 425/689 (61.68%), Query Frame = 0
Query: 1 MATIEFQEKKRWGDLSKVYTRKKHNKRFKNCDTGAVEPATSSATPVNEAVSTETITDITNNQEKVGVEKGGDSVQERPLELDLAEKDGNSTSQVEEVPKNLSPLNGVSDGLSNENQPQEGDNSTNKLQEVPNGNAVINPVVVRVDDRVRINFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAPVGAAAYSLSQHSENNERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNGFASVRENDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSHAFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPP-ETNKKVKSNGRRKHG-QLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVFNEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTFRNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPELIFDMNHYGGLPTPMSRKVVPTPPSSQPIFPERDLDRSE-YMPEPVEFRPKPF-VVPSVKTPVPKKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQDDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELA-QARAEAQKSIHAPNLDPAFTVAAEESKAGDTRVATKSLVQAEKQ 684
+A + +EK RWG+ +KVYTRK HNK KN +T A A+++ +T T + +N S +P LA ++ NS+ Q + LS L+ SD S+ N P + S +E PN N I P++ +VD+RVRIN AA S+++I ELRRKL+ ELDQVRS+ AK++E V + G Y+ SQ S N+ +++ L+RVNSE+ SV + +S FRHL+VSV +NN HG E+IEKEKRTPK NQYYRNSDFLL K+RLPP E+NKK+K+N +KHG ++ Y +D++ QA KSC LL +LMKHKH WVFN PV+A+ALGLHDYHDIIKHPMDLGT+KS+LA YKSPREFA+DVR TF NA TYNP G DVHIMA+QLS IFE++WAVIEA+YN + ++M + GLPTP SRK P P R LDRS+ M PV+ R K P +TPVPKKPKAKD +KRDMTF+EK++LS NL+SLP EKL+++VQIIKK NS L Q DDEIE+DIDS DAETLWELDRFVTNYKKSLSK +R+AELA QARAEA ++ A N PA ++E+K + VAT S VQ EKQ
Sbjct: 6 LAADDSREKHRWGEGNKVYTRKIHNKGLKNKNTAATAAASTTTDNNIITTTTTTNINNDDN-----------SNVPQPSSQTLATEEANSSQQQRQT---LSRLDAASDDSSSHNPPPQV--SAPNGREAPNENGAIKPIITKVDNRVRINLAAARSKNDIRELRRKLVTELDQVRSL-----AKKLEAKEVQLTGYSTGDGGGGYNHSQFSGND--------------------------------------------VINKGSLVRVNSEVGSVGHL------------------DSRPFRHLSVSVMENN---HGVGEFIEKEKRTPKVNQYYRNSDFLLGKERLPPPESNKKLKTNRGKKHGGEMGYGFVMDKYACQALKSCSNLLAKLMKHKHAWVFNVPVDAKALGLHDYHDIIKHPMDLGTVKSRLAKNWYKSPREFAEDVRRTFHNAMTYNPKGQDVHIMAEQLSKIFEEKWAVIEAEYNVDWRYEMVYDVGLPTPTSRKTH-PPHPPIPAPEMRSLDRSQSMMTMPVDSRLKQSNSAPVGRTPVPKKPKAKDRDKRDMTFEEKQRLSTNLQSLPSEKLDNIVQIIKKSNSTLCQHDDEIEVDIDSVDAETLWELDRFVTNYKKSLSKNKRKAELALQARAEATHAVPAINPTPAIVKESKETKTDEKNVATSSPVQEEKQ 607
BLAST of DCAR_021014 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HA25 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5948648.1}))
HSP 1 Score: 538.88 bits (1387), Expect = 0.000e+0
Identity = 301/563 (53.46%), Postives = 373/563 (66.25%), Query Frame = 0
Match: A0A7J7HA25 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5948648.1}))
HSP 1 Score: 538.88 bits (1387), Expect = 0.000e+0
Identity = 301/563 (53.46%), Postives = 373/563 (66.25%), Query Frame = 0
Query: 129 EVPNGNAVINPVVVRVDDRVRINFAATNSRDEIWELRRKLLNELDQVRSMSKQLQAKEVELSGVCSNTAAAPVGAAAYSLSQHSENNERREVVKVNSEVVSVRNLKLKPFRAVSNSVMENNGFASVRENDNLVDGSQLMRVNSELDSVVTVQEYRPFRQLNVSVPENINNSHAFRHLNVSVPQNNNHSHGFSEYIEKEKRTPKANQYYRNSDFLLAKDRLPP-ETNKKVKSNGRRKHG-QLDYASSIDRFWNQAFKSCRELLQRLMKHKHGWVFNEPVNARALGLHDYHDIIKHPMDLGTIKSKLAHYLYKSPREFADDVRLTFRNAKTYNPMGHDVHIMADQLSTIFEDRWAVIEAKYNPELIFDMNHYGGLPTPMSRKVVPTPPSSQPIFPERDLDRSEYMPEPVEFRPKPFVVPSVKTPVPKKPKAKDLNKRDMTFDEKRKLSVNLESLPVEKLESVVQIIKKRNSVLKQQDDEIELDIDSFDAETLWELDRFVTNYKKSLSKYRRRAELA-QARAEAQKSIHAPNLDPAFTVAAEESKAGDTRVATKSLVQAEKQGGDV 688
E PNGN + P++ +V++RVRI+ A ++EI L+RKL+NELDQVR + K+L+AKEV+LSG S G YS SQ+S N DG L RVNSE+ SV + RPF+QL+VSV EN +HG E+IEKEKRTPKANQYYRNS+FLL KDRLPP E+NKK+KSNG +KHG ++ Y +D++ +QA KSC LL RLMKHKHGWVFN PV+A+ALGLHDYH II HPMDLGT+KS+L+ YKSPREFA+DVRLTFRNA TYNP G DVH+MA++LS IFE++WA IE++YN + +++ H GLPTP SRKV P PP Q I R L+R+ E V + KP P +TPVPKKPKAKDL+KRDMT++EK++LS NL+SLP EKL+++VQIIKKRNS L Q DDEIE+DIDS DAETLWELDRFVTNYKKSLSK +R+AE+A QARAE + N PA A +ESK G+ AT S Q E++G +V
Sbjct: 23 EPPNGNGAVKPIITKVENRVRIDLEAAREKNEIGTLKRKLVNELDQVRGLVKELEAKEVQLSG-YSLAVVVGGGGGGYSHSQYSGN-----------------------------------------------DGRVLARVNSEVGSV-GHHDSRPFQQLSVSVMEN--------------------NHGVGEFIEKEKRTPKANQYYRNSEFLLGKDRLPPAESNKKLKSNGGKKHGREMGYGFGMDKYTSQALKSCNNLLARLMKHKHGWVFNTPVDAKALGLHDYHIIINHPMDLGTVKSRLSKNWYKSPREFAEDVRLTFRNAMTYNPKGQDVHLMAEELSNIFEEKWAAIESEYNLDWRYELVHDVGLPTPTSRKVHPPPPPLQ-IPDVRSLERA----ESVTGKLKPH-APVARTPVPKKPKAKDLHKRDMTYEEKQRLSTNLQSLPTEKLDNIVQIIKKRNSALSQHDDEIEVDIDSVDAETLWELDRFVTNYKKSLSKIKRKAEIALQARAETATGVPGMNPAPASVQAPKESKIGEQNAATASPAQGERKGDNV 510
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5ABF0 | E-Value: 0.000e+0, PID: 50.07 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8526... [more] |
| A0A2J6MF73 | E-Value: 0.000e+0, PID: 50.78 | (Uncharacterized protein {ECO:0000313|EMBL:PLY9825... [more] |
| A0A6S7P127 | E-Value: 0.000e+0, PID: 50.78 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4106... [more] |
| A0A5B6Z0Y1 | E-Value: 0.000e+0, PID: 49.49 | (Putative transcription factor GTE4 {ECO:0000313|E... [more] |
| A0A124SHS3 | E-Value: 0.000e+0, PID: 52.74 | (Bromodomain-containing protein {ECO:0000313|EMBL:... [more] |
| A0A103Y492 | E-Value: 0.000e+0, PID: 48.64 | (Uncharacterized protein {ECO:0000313|EMBL:KVI0224... [more] |
| A0A5B6Z3W0 | E-Value: 0.000e+0, PID: 49.12 | (Putative transcription factor GTE4 {ECO:0000313|E... [more] |
| A0A2R6PTG7 | E-Value: 0.000e+0, PID: 48.34 | (Transcription factor like {ECO:0000313|EMBL:PSR96... [more] |
| A0A5B6Z196 | E-Value: 0.000e+0, PID: 48.77 | (Putative transcription factor GTE4 {ECO:0000313|E... [more] |
| A0A7J7HA25 | E-Value: 0.000e+0, PID: 53.46 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5948... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |