Resource Type:
Polypeptide
Name:
DCAR_021796
Identifier:
DCAR_021796.mRNA-protein
Sequence:
MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQ
KQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLV
VTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGIL
KGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGG
HRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIIL
FIIIIVPIVIPIWLLFTQEPEDQAHEALLAETRTEEPVITGHDANEIIFS
EVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGE
DFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFV
SLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMG
WPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG
TLILSSLLASSIYDSEAAKQAQQFPITSGDDEPPRCYGVVCFSLTLYIMS
ALCIVAVILSLTLVYRTRVVYAHLCYYSRRLSDSENLKTLGIVFSRQRAM
LGQGCQSQAVFSKARYLVILKLAQV*
Sequence Length:
626
Sequence Checksum:
8f2aa2cb55789db17add45729ffdaa69
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_021796, derives from mRNA, DCAR_021796. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5Q8V5 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 917.916 bits (2371), Expect = 0.000e+0
Identity = 456/589 (77.42%), Postives = 510/589 (86.59%), Query Frame = 0
Match: A0A2H5Q8V5 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 917.916 bits (2371), Expect = 0.000e+0
Identity = 456/589 (77.42%), Postives = 510/589 (86.59%), Query Frame = 0
Query: 1 MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLVVTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGGHRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIILFIIIIVPIVIPIWLLFTQEPEDQAHEALLAETRTEEPVITGHDANEIIFSEVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFVSLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMGWPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGTLILSSLLASSIYDSEAAKQAQQ----------FPITSGDDEPPRCYGVVCFSLTLYIMSALCIVAVILSLTLVYRTRVVYAHLCYYSR 579
MG+F ++F+ FFNNRWLVFVAAMWIQSCAGIGYLFGSISP IKSSLNYNQKQ+ARLGVAKDLGDSVGFLAGSLCE+LPMW ALLVGA QNFIGYG VWL+VTGRAPVLPLWAMC+LIF+G NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGL GAIL+QVY +I++PD A+LIFMVAVGPAMVVI+LMFI+RPVGGHRQVR SD +S +FIY VCL+LAAYLMGVMLVEDL+DLNH VI+IFT+ILF+++ +PIVIPI L F E D A EALL++ EP + + +E+I SEVEDEKP+ VDLLPA+ER+KRIAQLQ++L AAAEGAVRVK RRGPHRGEDFTL QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS+GY+NTHIFVS+ISIWNFLGRVGGGYFSEIIV+DYAYPR +AMAVAQF+MA GH+F+ MGWPG MYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG+L+ S L+AS IYD EA KQ Q F DEP +C G +C+ LT IMS LCIVAVILS+ LV+RT VY+HL SR
Sbjct: 1 MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPMWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDQANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETHEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSR 589
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067FKD0 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 916.376 bits (2367), Expect = 0.000e+0
Identity = 455/589 (77.25%), Postives = 510/589 (86.59%), Query Frame = 0
Match: A0A067FKD0 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 916.376 bits (2367), Expect = 0.000e+0
Identity = 455/589 (77.25%), Postives = 510/589 (86.59%), Query Frame = 0
Query: 1 MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLVVTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGGHRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIILFIIIIVPIVIPIWLLFTQEPEDQAHEALLAETRTEEPVITGHDANEIIFSEVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFVSLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMGWPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGTLILSSLLASSIYDSEAAKQAQQ----------FPITSGDDEPPRCYGVVCFSLTLYIMSALCIVAVILSLTLVYRTRVVYAHLCYYSR 579
MG+F ++F+ FFNNRWLVFVAAMWIQSCAGIGYLFGSISP IKSSLNYNQKQ+ARLGVAKDLGDSVGFLAGSLCE+LP+W ALLVGA QNFIGYG VWL+VTGRAPVLPLWAMC+LIF+G NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGL GAIL+QVY +I++PD A+LIFMVAVGPAMVVI+LMFI+RPVGGHRQVR SD +S +FIY VCL+LAAYLMGVMLVEDL+DLNH VI+IFT+ILF+++ +PIVIPI L F E D A EALL++ EP + + +E+I SEVEDEKP+ VDLLPA+ER+KRIAQLQ++L AAAEGAVRVK RRGPHRGEDFTL QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS+GY+NTHIFVS+ISIWNFLGRVGGGYFSEIIV+DYAYPR +AMAVAQF+MA GH+F+ MGWPG MYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG+L+ S L+AS IYD EA KQ Q F DEP +C G +C+ LT IMS LCIVAVILS+ LV+RT VY+HL SR
Sbjct: 1 MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSR 589
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4U326 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 915.99 bits (2366), Expect = 0.000e+0
Identity = 455/589 (77.25%), Postives = 510/589 (86.59%), Query Frame = 0
Match: V4U326 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 915.99 bits (2366), Expect = 0.000e+0
Identity = 455/589 (77.25%), Postives = 510/589 (86.59%), Query Frame = 0
Query: 1 MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLVVTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGGHRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIILFIIIIVPIVIPIWLLFTQEPEDQAHEALLAETRTEEPVITGHDANEIIFSEVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFVSLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMGWPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGTLILSSLLASSIYDSEAAKQAQQ----------FPITSGDDEPPRCYGVVCFSLTLYIMSALCIVAVILSLTLVYRTRVVYAHLCYYSR 579
MG+F ++F+ FFNNRWLVFVAAMWIQSCAGIGYLFGSISP IKSSLNYNQKQ+ARLGVAKDLGDSVGFLAGSLCE+LP+W ALLVGA QNFIGYG VWL+VTGRAPVLPLWAMC+LIF+G NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGL GAIL+QVY +I++PD A+LIFMVAVGPAMVVI+LMFI+RPVGGHRQVR SD +S +FIY VCL+LAAYLMGVMLVEDL+DLNH VI+IFT+ILF+++ +PIVIPI L F E D A EALL++ EP + + +E+I SEVEDEKP+ VDLLPA+ER+KRIAQLQ++L AAAEGAVRVK RRGPHRGEDFTL QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS+GY+NTHIFVS+ISIWNFLGRVGGGYFSEIIV+DYAYPR +AMAVAQF+MA GH+F+ MGWPG MYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG+L+ S L+AS IYD EA KQ Q F DEP +C G +C+ LT IMS LCIVAVILS+ LV+RT VY+HL SR
Sbjct: 1 MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETHEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSR 589
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1PZJ0 ((Major facilitator superfamily protein {ECO:0000313|EMBL:PWA91190.1}))
HSP 1 Score: 915.605 bits (2365), Expect = 0.000e+0
Identity = 450/587 (76.66%), Postives = 501/587 (85.35%), Query Frame = 0
Match: A0A2U1PZJ0 ((Major facilitator superfamily protein {ECO:0000313|EMBL:PWA91190.1}))
HSP 1 Score: 915.605 bits (2365), Expect = 0.000e+0
Identity = 450/587 (76.66%), Postives = 501/587 (85.35%), Query Frame = 0
Query: 1 MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLVVTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGGHRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIILFIIIIVPIVIPIWLLFTQEPEDQAHEALLAETRTEEPVITGHDANEIIFSEVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFVSLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMGWPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGTLILSSLLASSIYDSEAAKQAQQFPITSG-------DDEPPRCYGVVCFSLTLYIMSALCIVAVILSLTLVYRTRVVYAHLCYYSRR 580
M + D I F NNRWLVF+AAMWIQSCAGIGYLFGSISP IKSSLNYNQKQVARLGVAKDLGDSVGFLAGS+ EILP+WA LLVGA QNF+GYG VWLVVTG+APVLPLW MCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAIL+Q+Y LINSPD ASLIFMVAVGP+MVVI+LMFIVRPVGGHRQ+RSSD ++ S IYCVCLILAAYLMGVMLVEDLIDLN ++ IFT ILF++++VPI IPI+L FT + EALL+E + +EP T HD NEIIFSEVE+EKP VDLLPA+ERQKRIAQLQSKLAQAAAEGAVR+K RGPHRGEDF L QALIKADFWL+F +LLLGSGSGLTVIDNLGQMS+S+GY+NTHIFVS+ISIWNFLGRVGGGY SEI+V+DYAYPR +A+AVAQ IMA GHLF AMGWPG MY+GTLLIGLGYG HWAI+PA ASELFGLKKFGALYNFLTLANPAG+L+ + L+AS IYDSEA KQA ++ D+ +C G +CF LT IMS LCI+A ILSL LV RT+ VY HL Y +R
Sbjct: 1 MVKAKDLLITFINNRWLVFIAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSMSEILPLWALLLVGAIQNFVGYGWVWLVVTGKAPVLPLWVMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYALINSPDKASLIFMVAVGPSMVVIALMFIVRPVGGHRQLRSSDASNFSIIYCVCLILAAYLMGVMLVEDLIDLNQTIVKIFTAILFVLVVVPIGIPIYLTFTSDRRTPEQEALLSEPQHKEPE-TSHDPNEIIFSEVEEEKPHDVDLLPASERQKRIAQLQSKLAQAAAEGAVRIKRTRGPHRGEDFDLTQALIKADFWLLFCTLLLGSGSGLTVIDNLGQMSESLGYDNTHIFVSMISIWNFLGRVGGGYVSEIVVRDYAYPRPVALAVAQAIMAIGHLFFAMGWPGAMYIGTLLIGLGYGFHWAIIPATASELFGLKKFGALYNFLTLANPAGSLVFNGLIASYIYDSEAEKQAGLHTSSASYLTKLFDTDDALKCSGSICFFLTYMIMSGLCIIACILSLILVRRTKTVYQHL--YGKR 584
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061ECX0 ((Major facilitator superfamily protein isoform 1 {ECO:0000313|EMBL:EOY02830.1}))
HSP 1 Score: 913.679 bits (2360), Expect = 0.000e+0
Identity = 453/590 (76.78%), Postives = 509/590 (86.27%), Query Frame = 0
Match: A0A061ECX0 ((Major facilitator superfamily protein isoform 1 {ECO:0000313|EMBL:EOY02830.1}))
HSP 1 Score: 913.679 bits (2360), Expect = 0.000e+0
Identity = 453/590 (76.78%), Postives = 509/590 (86.27%), Query Frame = 0
Query: 1 MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLVVTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGGHRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIILFIIIIVPIVIPIWLLFTQEPEDQAHEALLAETRTEEPVITGHDANEIIFSEVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFVSLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMGWPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGTLILSSLLASSIYDSEAAKQAQQF---PITSG--------DDEPPRCYGVVCFSLTLYIMSALCIVAVILSLTLVYRTRVVYAHLCYYSR 579
MG+ ++F F NNRWLVFVAAMWIQSCAGIGYLFGSISP IKSSLNYNQ+Q+A+LGVAKDLGDSVGFLAGSL EILP+W ALLVGA QN +GYG VWL+VTGR PVLPLWAMC+LIF+G NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAIL+Q+Y +IN PD ASLIFMVAVGPAMVVI+LMFI+RPVGGHRQVR SDG SS+FIY VCL+LAAYLMGV+L+EDL+D++H +++IFT+ILF+++ +PI IPI L F +E D A E LL +E + HDANEIIFSEVEDEKP+ VDLLPA+ERQKRIAQLQ KL QAAAEGAVRVK RRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS+GYNNTHIFVS+ISIWNFLGRVGGGYFSEIIV+DYAYPR +A+AVAQ +M+ GH+F AMGWPG +Y+GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG+L+ S ++ASSIYD EA KQAQQ P SG DEP +C G VCF LT IMS C++A +LS+ LVYRT+ VYAHL SR
Sbjct: 1 MGRLKERFQAFVNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQRQLAKLGVAKDLGDSVGFLAGSLSEILPLWGALLVGAVQNLVGYGWVWLIVTGRVPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMINFPDHASLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDGLSSTFIYGVCLLLAAYLMGVLLLEDLVDVSHILVIIFTVILFVLLFIPIAIPIILSFCEESRDPAEEVLLPRPEQQEAGKSEHDANEIIFSEVEDEKPKEVDLLPASERQKRIAQLQVKLFQAAAEGAVRVKRRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYNNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAIAVAQLVMSVGHVFFAMGWPGAIYIGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAQQHHIQPPVSGSIFSGMFAQDEPLKCEGSVCFFLTSMIMSGFCVIAAVLSMILVYRTKTVYAHLYGKSR 590
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G9V1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7129401.1}))
HSP 1 Score: 910.212 bits (2351), Expect = 0.000e+0
Identity = 456/585 (77.95%), Postives = 511/585 (87.35%), Query Frame = 0
Match: A0A834G9V1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7129401.1}))
HSP 1 Score: 910.212 bits (2351), Expect = 0.000e+0
Identity = 456/585 (77.95%), Postives = 511/585 (87.35%), Query Frame = 0
Query: 1 MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLVVTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGGHRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIILFIIIIVPIVIPIWLLFTQEPEDQAHEALLAETRTEEPVITGHDANEIIFSEVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFVSLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMGWPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGTLILSSLLASSIYDSEAAKQ-----------AQQFPITSGDDEPPRCYGVVCFSLTLYIMSALCIVAVILSLTLVYRTRVVYAHL 574
M +KF+ FFN+RWLVFVAAMWIQSCAGIGYLFGSISP IKSSLNYNQKQ+ARLGVAKDLGDSVGFLAGSLCE+LP+WAAL VGA QNF+GYG VWLVVTGRAP LPLWAMC+LIF GTNGETYFNTA+LVSCVQNFPKSRG VVG+LKGFAGL+GAIL+Q+Y +I++PD A+LIFMVAVGP MVVI+LMFIVRPVGGH+Q+R SD +SSSFIY VCL+LAAYLM VML+EDL+DL++ VI+IFT+ LFI+++VPIVIP+ L F E D A EALL ++ E +GHD NE+IFSEVEDEKP+ VDLLPA ERQKRIAQLQ +LAQAAAEGAVRVK RRGPHRGEDFTL QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS+GY+NTHIFVSLISIWNFLGRVGGGYFSEIIV+DYAYPR +AMA AQFIMAFGHLF+AMGWPG MY+GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG+L+ S L+ASSIYD EA KQ F + DEP +C G +CFSLTL IMS LCI+AV+LS+ LV+RT+VVYAHL
Sbjct: 1 MVSLGEKFVSFFNSRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPLWAALFVGALQNFVGYGWVWLVVTGRAPALPLWAMCVLIFAGTNGETYFNTASLVSCVQNFPKSRGHVVGVLKGFAGLAGAILTQIYAVIHTPDHAALIFMVAVGPTMVVIALMFIVRPVGGHKQIRPSDSSSSSFIYSVCLLLAAYLMAVMLLEDLVDLSYTVIIIFTVGLFILLVVPIVIPVSLSFFPETRDPAEEALLPDSHKHEASKSGHDINEVIFSEVEDEKPKEVDLLPALERQKRIAQLQVRLAQAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSVGYDNTHIFVSLISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAAAQFIMAFGHLFLAMGWPGAMYIGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDIEAEKQHHHHHHLQKVLGSTFLGSFAVDEPLKCDGAICFSLTLMIMSGLCIIAVVLSMILVHRTKVVYAHL 585
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2UCK0 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0
Identity = 442/591 (74.79%), Postives = 505/591 (85.45%), Query Frame = 0
Match: A0A5D2UCK0 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0
Identity = 442/591 (74.79%), Postives = 505/591 (85.45%), Query Frame = 0
Query: 1 MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLVVTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGGHRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIILFIIIIVPIVIPIWLLFTQEPEDQA-HEALLAETRTEEPVITGHDANEIIFSEVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFVSLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMGWPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGTLILSSLLASSIYDSEAAKQAQQF---PITSGD--------DEPPRCYGVVCFSLTLYIMSALCIVAVILSLTLVYRTRVVYAHLCYYSR 579
MG+ ++ F NNRWLVFVAA+WIQSCAGIGY+FGS+SP IK SLNYNQ+Q+++LGVAKDLGDSVGFLAGSL EILP+W ALLVGA QN IGYG VWL+VTGRAPVLPLWAMC+LIF+G NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAIL+Q+Y +IN PD A+LIFMVAVGPAMVV++LMFI+RPVGGHRQVR SDG S +FIY VCL+LAAYLMGVML+EDL+D++H +I+IFT+ILF++++ P+VIP+ L F+ EP+D A E LL + +E + D E+IFSEVEDEKP+ VDLLPATER KRIAQLQ+KL QAAAEGAVRVK RRGPHRGEDFTLMQALIKAD WLIFFSLLL SGSGLTVIDNLGQMSQS+GY+NTHIFVS+ISIWNFLGRVGGGYFSEIIV+DYAYPR +AMAV+Q +MA GH+F AMGWPG MY+GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG+LI S ++ASSIYD EA KQA Q P SG DEP +C G +CF LT IMS CI+A +LSL LVYRT+ VYA++ SR
Sbjct: 2 MGKLKERIQAFVNNRWLVFVAAIWIQSCAGIGYVFGSLSPVIKRSLNYNQRQLSKLGVAKDLGDSVGFLAGSLSEILPLWGALLVGALQNLIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMINFPDQAALIFMVAVGPAMVVVALMFIIRPVGGHRQVRPSDGLSFTFIYSVCLLLAAYLMGVMLLEDLVDVSHTLIIIFTVILFLLLVAPVVIPVKLSFSDEPKDLAVEEVLLPKPGQQEAGKSEQD--EVIFSEVEDEKPKEVDLLPATERHKRIAQLQAKLCQAAAEGAVRVKRRRGPHRGEDFTLMQALIKADLWLIFFSLLLASGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPIAMAVSQLVMAVGHVFFAMGWPGAMYIGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLIFSGVIASSIYDREAEKQAHQHHIPPQISGSIFSGMFAVDEPLKCEGSICFFLTSMIMSGFCIIAGVLSLILVYRTKTVYANIYGKSR 590
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0D2NEZ0 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0
Identity = 442/591 (74.79%), Postives = 505/591 (85.45%), Query Frame = 0
Match: A0A0D2NEZ0 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0
Identity = 442/591 (74.79%), Postives = 505/591 (85.45%), Query Frame = 0
Query: 1 MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLVVTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGGHRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIILFIIIIVPIVIPIWLLFTQEPEDQA-HEALLAETRTEEPVITGHDANEIIFSEVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFVSLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMGWPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGTLILSSLLASSIYDSEAAKQAQQF---PITSGD--------DEPPRCYGVVCFSLTLYIMSALCIVAVILSLTLVYRTRVVYAHLCYYSR 579
MG+ ++ F NNRWLVFVAA+WIQSCAGIGY+FGS+SP IK SLNYNQ+Q+++LGVAKDLGDSVGFLAGSL EILP+W ALLVGA QN IGYG VWL+VTGRAPVLPLWAMC+LIF+G NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAIL+Q+Y +IN PD A+LIFMVAVGPAMVV++LMFI+RPVGGHRQVR SDG S +FIY VCL+LAAYLMGVML+EDL+D++H +I+IFT+ILF++++ P+VIP+ L F+ EP+D A E LL + +E + D E+IFSEVEDEKP+ VDLLPATER KRIAQLQ+KL QAAAEGAVRVK RRGPHRGEDFTLMQALIKAD WLIFFSLLL SGSGLTVIDNLGQMSQS+GY+NTHIFVS+ISIWNFLGRVGGGYFSEIIV+DYAYPR +AMAV+Q +MA GH+F AMGWPG MY+GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG+LI S ++ASSIYD EA KQA Q P SG DEP +C G +CF LT IMS CI+A +LSL LVYRT+ VYA++ SR
Sbjct: 2 MGKLKERIQAFVNNRWLVFVAAIWIQSCAGIGYVFGSLSPVIKRSLNYNQRQLSKLGVAKDLGDSVGFLAGSLSEILPLWGALLVGALQNLIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMINFPDQAALIFMVAVGPAMVVVALMFIIRPVGGHRQVRPSDGFSFTFIYSVCLLLAAYLMGVMLLEDLVDVSHTLIIIFTVILFLLLVAPVVIPVKLSFSDEPKDLAVEEVLLPKPEQQEAGKSEQD--EVIFSEVEDEKPKEVDLLPATERHKRIAQLQAKLCQAAAEGAVRVKRRRGPHRGEDFTLMQALIKADLWLIFFSLLLASGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPIAMAVSQLVMAVGHVFFAMGWPGAMYIGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLIFSGVIASSIYDREAEKQAHQHHIPPQISGSIFSGMFAVDEPLKCEGSICFFLTSMIMSGFCIIAGVLSLILVYRTKTVYANIYGKSR 590
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J9B2K2 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 907.901 bits (2345), Expect = 0.000e+0
Identity = 441/591 (74.62%), Postives = 505/591 (85.45%), Query Frame = 0
Match: A0A7J9B2K2 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 907.901 bits (2345), Expect = 0.000e+0
Identity = 441/591 (74.62%), Postives = 505/591 (85.45%), Query Frame = 0
Query: 1 MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLVVTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGGHRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIILFIIIIVPIVIPIWLLFTQEPEDQA-HEALLAETRTEEPVITGHDANEIIFSEVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFVSLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMGWPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGTLILSSLLASSIYDSEAAKQAQQF---PITSGD--------DEPPRCYGVVCFSLTLYIMSALCIVAVILSLTLVYRTRVVYAHLCYYSR 579
MG+ ++ F NNRWLVFVAA+WIQSCAGIGY+FGS+SP IK SLNYNQ+Q+++LGVAKDLGDSVGFLAGSL EILP+W ALLVGA QN IGYG VWL+VTGRAPVLPLWAMC+LIF+G NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAIL+Q+Y +IN PD A+LIFMVAVGPAMVV++LMFI+RPVGGHRQVR SDG S +FIY VCL+LAAYLMGVML+EDL+D++H +I+IFT+ILF++++ P+VIP+ L F+ EP+D A E LL + +E + D E+IFSEVEDEKP+ VDLLPA+ER KRIAQLQ+KL QAAAEGAVRVK RRGPHRGEDFTLMQALIKAD WLIFFSLLL SGSGLTVIDNLGQMSQS+GY+NTHIFVS+ISIWNFLGRVGGGYFSEIIV+DYAYPR +AMAV+Q +MA GH+F AMGWPG MY+GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG+LI S ++ASSIYD EA KQA Q P SG DEP +C G +CF LT IMS CI+A +LSL LVYRT+ VYA++ SR
Sbjct: 1 MGKLKERIQAFVNNRWLVFVAAIWIQSCAGIGYVFGSLSPVIKRSLNYNQRQLSKLGVAKDLGDSVGFLAGSLSEILPLWGALLVGAVQNLIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMINFPDQAALIFMVAVGPAMVVVALMFIIRPVGGHRQVRPSDGLSFTFIYSVCLLLAAYLMGVMLLEDLVDVSHTLIIIFTVILFLLLVAPVVIPVKLSFSDEPKDLAVEEVLLPKPEQQEAGKSEQD--EVIFSEVEDEKPKEVDLLPASERHKRIAQLQAKLCQAAAEGAVRVKRRRGPHRGEDFTLMQALIKADLWLIFFSLLLASGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPIAMAVSQLVMAVGHVFFAMGWPGAMYIGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLIFSGVIASSIYDREAEKQAHQHHIPPQISGSIFSGMFAVDEPLKCEGSICFFLTSMIMSGFCIIAGVLSLILVYRTKTVYANIYGKSR 589
BLAST of DCAR_021796 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J8YRE0 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 907.516 bits (2344), Expect = 0.000e+0
Identity = 441/591 (74.62%), Postives = 505/591 (85.45%), Query Frame = 0
Match: A0A7J8YRE0 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 907.516 bits (2344), Expect = 0.000e+0
Identity = 441/591 (74.62%), Postives = 505/591 (85.45%), Query Frame = 0
Query: 1 MGQFNDKFIEFFNNRWLVFVAAMWIQSCAGIGYLFGSISPAIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSLCEILPMWAALLVGAAQNFIGYGLVWLVVTGRAPVLPLWAMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILSQVYVLINSPDSASLIFMVAVGPAMVVISLMFIVRPVGGHRQVRSSDGASSSFIYCVCLILAAYLMGVMLVEDLIDLNHNVIVIFTIILFIIIIVPIVIPIWLLFTQEPEDQA-HEALLAETRTEEPVITGHDANEIIFSEVEDEKPRGVDLLPATERQKRIAQLQSKLAQAAAEGAVRVKSRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSIGYNNTHIFVSLISIWNFLGRVGGGYFSEIIVKDYAYPRHLAMAVAQFIMAFGHLFMAMGWPGEMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGTLILSSLLASSIYDSEAAKQAQQF---PITSGD--------DEPPRCYGVVCFSLTLYIMSALCIVAVILSLTLVYRTRVVYAHLCYYSR 579
MG+ ++ F NNRWLVFVAA+WIQSCAGIGY+FGS+SP IK SLNYNQ+Q+++LGVAKDLGDSVGFLAGSL EILP+W ALLVGA QN IGYG VWL+VTGRAPVLPLWAMC+LIF+G NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAIL+Q+Y +IN PD A+LIFMVAVGPAMVV++LMFI+RPVGGHRQVR SDG S +FIY VCL+LAAYLMGVML+EDL+D++H +I+IFT+ILF++++ P+VIP+ L F+ EP+D A E LL + +E + D E+IFSEVEDEKP+ VDLLPA+ER KRIAQLQ+KL QAAAEGAVRVK RRGPHRGEDFTLMQALIKAD WLIFFSLLL SGSGLTVIDNLGQMSQS+GY+NTHIFVS+ISIWNFLGRVGGGYFSEIIV+DYAYPR +AMAV+Q +MA GH+F AMGWPG MY+GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG+LI S ++ASSIYD EA KQA Q P SG DEP +C G +CF LT IMS CI+A +LSL LVYRT+ VYA++ SR
Sbjct: 2 MGKLKERIQAFVNNRWLVFVAAIWIQSCAGIGYVFGSLSPVIKRSLNYNQRQLSKLGVAKDLGDSVGFLAGSLSEILPLWGALLVGALQNLIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMINFPDQAALIFMVAVGPAMVVVALMFIIRPVGGHRQVRPSDGLSFTFIYSVCLLLAAYLMGVMLLEDLVDVSHTLIIIFTVILFLLLVAPVVIPVKLSFSDEPKDLAVEEVLLPKPEQQEAGKSEQD--EVIFSEVEDEKPKEVDLLPASERHKRIAQLQAKLCQAAAEGAVRVKRRRGPHRGEDFTLMQALIKADLWLIFFSLLLASGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPIAMAVSQLVMAVGHVFFAMGWPGAMYIGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLIFSGVIASSIYDREAEKQAHQHLIPPQISGSIFSGMFAVDEPLKCEGSICFFLTSMIMSGFCIIAGVLSLILVYRTKTVYANIYGKSR 590
| Match Name | Stats | Description |
|---|---|---|
| A0A2H5Q8V5 | E-Value: 0.000e+0, PID: 77.42 | Nodulin-like domain-containing protein {ECO:000025... [more] |
| A0A067FKD0 | E-Value: 0.000e+0, PID: 77.25 | Nodulin-like domain-containing protein {ECO:000025... [more] |
| V4U326 | E-Value: 0.000e+0, PID: 77.25 | Nodulin-like domain-containing protein {ECO:000025... [more] |
| A0A2U1PZJ0 | E-Value: 0.000e+0, PID: 76.66 | (Major facilitator superfamily protein {ECO:000031... [more] |
| A0A061ECX0 | E-Value: 0.000e+0, PID: 76.78 | (Major facilitator superfamily protein isoform 1 {... [more] |
| A0A834G9V1 | E-Value: 0.000e+0, PID: 77.95 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7129... [more] |
| A0A5D2UCK0 | E-Value: 0.000e+0, PID: 74.79 | Nodulin-like domain-containing protein {ECO:000025... [more] |
| A0A0D2NEZ0 | E-Value: 0.000e+0, PID: 74.79 | Nodulin-like domain-containing protein {ECO:000025... [more] |
| A0A7J9B2K2 | E-Value: 0.000e+0, PID: 74.62 | Nodulin-like domain-containing protein {ECO:000025... [more] |
| A0A7J8YRE0 | E-Value: 0.000e+0, PID: 74.62 | Nodulin-like domain-containing protein {ECO:000025... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |