DCAR_022084

Resource Type: 
Polypeptide
Name: 
DCAR_022084
Identifier: 
DCAR_022084.mRNA-protein
Sequence: 
MASVSGIIRNQILHFTPPKHSIPFSSSITPSILPDDKTVITTAVTILKHH
RSKSRWTHLRSLFPNGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCC
HSLSSYSTIIHVLARARQKSKAQSLIQTVLHKFPQAHLGDCPKYPKIFES
LMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSREIFGGVERD
VSGNGVRVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYS
YSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVK
RAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFW
PESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLC
QEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEM
VQIQEQQEAIR*
Sequence Length: 
462
Sequence Checksum: 
3dcb9c0171e9db6327ca0687b91a5d07
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_022084, derives from mRNA, DCAR_022084.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BTE0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8545924.1}))

HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 277/477 (58.07%), Postives = 356/477 (74.63%), Query Frame = 0
 
Query:   15 FTPP--KHSIPFSSSITPSIL-PDDKTVITTAVTILKHHRSKSRWTHLRSLFPNGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCCHSLSSYSTIIHVLARARQKSKAQSLIQTVLHKFPQAHLGDCPKYPKIFESLMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSREIFGGVERDVS-------------------------GN-----GVRVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFWPESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMVQIQEQQE 458
            F+PP  KH + +S S  PS   P   ++I++ V+ILKHHRSKSRW  + SL+PNGF P++VS+ITL LRNNPHLAL +F FT + SLC H+L SYSTIIH+L+R R K++AQ+LIQ+ +      +       PKIFE+L+++YR CDSAPFVF+LL+ + LQ+KRIDQ++E+VRMLRSR I+  +    S                         G      G   V P+VHTFN++M+ FYREGL++NVEE+WDEM++  C PN YSYSVLMAAYC+DE+M +AL+VWEEM  K L+ D+VAYNTIIGGFC+IGE  RAEEFF EME + V+S+CVTFEHLI+GYCKIGDVDSA+LLYK MC KGF PESL +D +I GLC + R+ EA E+L+VA+K HD+ PKG SYEL+IKGLCQEG+M E LKLQAEMVGKG++PN E+Y+AFIDGY+KQGN++ A KLRKEM++ Q +Q+
Sbjct:   49 FSPPSHKHHLVYSFSSLPSDQSPPSDSLISSVVSILKHHRSKSRWNEIHSLYPNGFKPSEVSQITLHLRNNPHLALRFFLFTHRKSLCNHTLLSYSTIIHILSRGRLKTQAQTLIQSAIRLSEPINSSCSTTPPKIFETLVKTYRTCDSAPFVFELLIKACLQSKRIDQSIEIVRMLRSRGIYPTIRTSNSLIESILKFRGCCAGYDMYREIFSFDGEAENRVGAAKVFPSVHTFNIMMLSFYREGLMENVEEIWDEMVKLSCVPNVYSYSVLMAAYCDDEKMGEALKVWEEMRVKDLKHDVVAYNTIIGGFCRIGETGRAEEFFREMELSGVESTCVTFEHLINGYCKIGDVDSAMLLYKDMCRKGFRPESLMVDALIGGLCYQGRVFEALEFLKVAMKSHDMTPKGKSYELLIKGLCQEGKMEEALKLQAEMVGKGFEPNLEIYSAFIDGYMKQGNKDLAGKLRKEMLETQMKQK 525    
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103YES3 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:KVI07769.1}))

HSP 1 Score: 541.962 bits (1395), Expect = 0.000e+0
Identity = 263/471 (55.84%), Postives = 343/471 (72.82%), Query Frame = 0
 
Query:   15 FTPPKHSIPFSSSITPSILPDDKTVITTAVTILKHHRSKSRWTHLRSLFPNGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCCHSLSSYSTIIHVLARARQKSKAQSLIQTVLHKFPQAHLGDCPKY--PKIFESLMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSR------------------------------EIFGGVERDVSGNGV--RVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFWPESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMV 451
            F  P  S+   SS +     +D+T + TAV+ILKHHRSKSRWTHLR+LFP GF P+QVS+IT+QLRNNPHLAL +F FT++HSLC HSL SY+TIIH LAR+RQKS+A SLIQ+ + KF  A+  D P    P IF +L+++YR+CDSAPFVFDLL+ + LQ+KRI+Q +E+ RMLRS+                              E+ G   + V  N V  + VVPNVHT+N+IM  FYR+GLV+N+E VW +M+   C P++YSYS+L+AAYC++ RM DA++VWEEMG K  + D++AYNTIIGGFC+ GEV +AEEFF EM     +S+CVT+EHLI+GYCKIGDVDSA+LLYK +C KG  P   T+D +IK LC KN++SEA +  R  +K++++V KG SYE +IKGLC EGRM +G+KLQAEMVG+GY+PNSE+Y AFIDGY K+GN+E A KLR E++
Sbjct:   98 FLSPIRSLNICSSASSPPSSEDETAVITAVSILKHHRSKSRWTHLRTLFPAGFDPSQVSQITIQLRNNPHLALRFFLFTIEHSLCHHSLLSYATIIHTLARSRQKSRALSLIQSAIRKFSDANT-DLPSNTPPSIFGALIKTYRICDSAPFVFDLLIKACLQSKRINQGIEIARMLRSKGIYPMISTCNSLIMSVSKHHGSVAGYAIYNELLGSSSKVVDKNVVCFKGVVPNVHTYNIIMHAFYRDGLVENLERVWSDMIVNNCLPSAYSYSILIAAYCDNGRMEDAMKVWEEMGNKSFKHDVMAYNTIIGGFCEAGEVHKAEEFFKEMGLGGEESTCVTYEHLINGYCKIGDVDSAVLLYKDICRKGLMPIGRTVDVLIKELCDKNKVSEALKISRATMKRNNVVMKGESYEFIIKGLCNEGRMEDGMKLQAEMVGRGYEPNSEIYRAFIDGYEKEGNKELADKLRGELL 567    

HSP 2 Score: 37.7354 bits (86), Expect = 5.364e+0
Identity = 31/139 (22.30%), Postives = 63/139 (45.32%), Query Frame = 0
 
Query:  215 TFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLV-----AYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKG 348
            T+  ++ G+ + G V +   ++ ++ R+G  P   +  VL+   C+  ++ +AL++        ++R+ V     +Y  II G C  G ++   +   EM     + +   +   I GY K G+ + A  L   + G G
Sbjct:  436 TYEHLINGYCKIGDVDSAVLLYKDICRKGLMPIGRTVDVLIKELCDKNKVSEALKISRAT----MKRNNVVMKGESYEFIIKGLCNEGRMEDGMKLQAEMVGRGYEPNSEIYRAFIDGYEKEGNKELADKLRGELLGMG 570    
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6MCD2 ((Uncharacterized protein {ECO:0000313|EMBL:PLY97252.1}))

HSP 1 Score: 540.421 bits (1391), Expect = 0.000e+0
Identity = 264/475 (55.58%), Postives = 353/475 (74.32%), Query Frame = 0
 
Query:   15 FTPPKHSIPF--SSSITPSILPDDKTVITTAVTILKHHRSKSRWTHLRSLFPNGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCCHSLSSYSTIIHVLARARQKSKAQSLIQTVLHKFPQAHLGDCP--KYPKIFESLMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSREI--------------------FGGVE--RDVSGN---------GVRVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFWPESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMVQIQ 454
            F  P  ++ F  +SS  PS   D++T + TAV++LKHHRSKSRWTHLR+LFP+GF P+Q S+IT+QLRN PHLAL +F F++QHS+C HSL SY+TIIH LAR+RQKS A +LI++ L KFP A+  D P    P IFE+L+ +YR CDSAPFVFDLL+ + LQ+KRI+QA+E+VRMLR++ I                      G E   ++ G+         GV++VVPNVHT+N+IM  FY++GL++N+E++W +M+   C P++YSY++LMAAYC++ RM +A+RVWEEM  KGL+ D +AYNTIIGG C+ GEV +AEEFF EM  +  +S+CVT+EHLI+GYCK GDVDSA+LLYK MC K F P   TID +IK LC KN++SEA +  R A+K++++V KG SYEL+IKGLC EGRM EG+KLQAEMVG+GY+PNS +Y+AFI+GY K+GN+EQA KL+ E+  I+
Sbjct:   13 FLNPTPTLRFCSASSQPPS---DNETAVATAVSVLKHHRSKSRWTHLRTLFPSGFDPSQFSQITIQLRNTPHLALRFFLFSIQHSMCHHSLLSYATIIHTLARSRQKSHALALIKSALRKFPDANT-DSPLRTPPLIFETLITTYRTCDSAPFVFDLLIKACLQSKRINQAIEIVRMLRTKGISPMISTCNSLIMSVSKHHGSIAGYEVYNELLGSTRQFGDQKLGVKIVVPNVHTYNIIMHSFYKDGLIENLEQLWSDMIVNKCLPSAYSYNILMAAYCDNGRMEEAMRVWEEMRNKGLKHDAMAYNTIIGGLCEAGEVDKAEEFFKEMGLDGEESTCVTYEHLITGYCKTGDVDSAMLLYKDMCRKEFTPLGSTIDVLIKELCEKNKVSEALKVSRFAMKRNNVVMKGESYELLIKGLCNEGRMDEGMKLQAEMVGRGYEPNSGIYSAFINGYEKEGNKEQAAKLKMELQSIK 483    
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1AEX2 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400021317}))

HSP 1 Score: 535.028 bits (1377), Expect = 0.000e+0
Identity = 259/485 (53.40%), Postives = 348/485 (71.75%), Query Frame = 0
 
Query:    1 MASVSGIIRNQILHFTPPKHSIP-FSSSITPSILPDDKTVITTAVTILKHHRSKSRWTHLRSLFP--NGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCCHSLSSYSTIIHVLARARQKSKAQSLIQTVLHKFPQAHLGDCPKYPKIFESLMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSREIFGGV------------------------------ERDVSGNGVRVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFWPESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMVQ 452
            MA +S + R  +L     KH +  FS+S +     +D+T+++ A TILKHHRSKSRW+ + SL P  +GFTP+QVS+I LQLRN PHLAL +FNFTV  S+CCHS+SSY+TIIH+L+R+R KS+A  LI+  + KFP  H  D    P+IFE L+++YR CDSAPFVFDLL+ + L +K+ID +V++VR L S+ IF  +                              + + SG  V+ V+ N +TFNV+MV F+REG+V+ +EEVW EM+ + C PN YSYS+LMAAYCED R+ +A++VW+EMG + ++ D+VAYNTII GFCK+G+V+RAEE F EM FN V+ +CVT EHLI+G+C  G++D+AL+LYK MC KGF PES TID V K LC K+ + +A E++R  IKKHDIVP+ T+YEL+I+ LC+EG M E LKLQ EMVGKGY PN E+Y+AFIDGYIKQG+EE+A+ LR EM++
Sbjct:    1 MAMLSSLTRRTVLSIPLTKHPLSTFSASTSSPPQSEDETLVSAATTILKHHRSKSRWSEILSLAPPTSGFTPSQVSKIILQLRNTPHLALRFFNFTVHRSICCHSVSSYATIIHILSRSRLKSQALELIKCAIRKFPDIHKPDSSNPPRIFEILVKTYRSCDSAPFVFDLLIKAYLDSKKIDVSVQLVRTLASKNIFPHIVVCNSLIELIAKSRGPFAAYDMYVEIFRCEKGEGSGREVKGVMANAYTFNVLMVAFHREGVVEKIEEVWKEMMAKNCTPNVYSYSILMAAYCEDGRVENAMKVWKEMGDEDVKHDIVAYNTIIEGFCKVGKVERAEEVFREMVFNGVECTCVTLEHLINGHCMSGNIDAALVLYKDMCRKGFKPESSTIDVVAKVLCDKSGVFDALEFVRAVIKKHDIVPRKTTYELLIQSLCKEGWMEEALKLQVEMVGKGYAPNFEIYSAFIDGYIKQGDEEKAETLRNEMLR 485    

HSP 2 Score: 46.595 bits (109), Expect = 8.598e-3
Identity = 41/174 (23.56%), Postives = 78/174 (44.83%), Query Frame = 0
 
Query:  165 FDLLVMSLLQAKRIDQAVEVVRMLRSREIFGGVE------------RDVSGNGVRVVV-----------PNVHTFNVIM-VGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRV 314
            ++ ++    +  ++++A EV R +    +F GVE              +SGN    +V           P   T +V+  V   + G+   +E V   + +    P   +Y +L+ + C++  M +AL++  EM GKG   +   Y+  I G+ K G+ ++AE    EM  N++
Sbjct:  319 YNTIIEGFCKVGKVERAEEVFREM----VFNGVECTCVTLEHLINGHCMSGNIDAALVLYKDMCRKGFKPESSTIDVVAKVLCDKSGVFDALEFVRAVIKKHDIVPRKTTYELLIQSLCKEGWMEEALKLQVEMVGKGYAPNFEIYSAFIDGYIKQGDEEKAETLRNEMLRNKI 488    
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6NWX5 ((Uncharacterized protein {ECO:0000313|EMBL:KAD5318318.1}))

HSP 1 Score: 531.561 bits (1368), Expect = 0.000e+0
Identity = 263/483 (54.45%), Postives = 344/483 (71.22%), Query Frame = 0
 
Query:    6 GIIRNQILHFTPPKHSIPFSSSITPSILPD-DKTVITTAVTILKHHRSKSRWTHLRSLFPNGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCCHSLSSYSTIIHVLARARQKSKAQSLIQTVLHKFPQAHLGDCPKYPK-IFESLMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSREIF--------------------GGVER-----DVSGN-------GVRVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFWPESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMVQIQ 454
             +++ + + F  P  +  F S   P+  P  D+T++T AV+ILKHHR KSRWTHLR+LFP+GFTP+Q S+IT+QLRNNPHLAL +FNFTV  SLC H+L SY+TIIH LAR+RQK+ A +LIQ+ + KF   +    P  P  IFE+L+R+YR CDSAPFVFDLL+   LQ+K +++A+E+VRMLRS+ I+                     G E      + SG        GV+V VPNVHT+N+IM  FY++GL++N+E+VW EM+   C PN YSYS+LMAAYC++ERM DA+R+W++MG  GLE D++AYNTIIGGFCK G V++AEEFF EM  +    S VT+EHLI GYCKIGD DSA+LLYK MC KGF P  + +D +IK LC  N++SEA    R A+ K+++V KG SYE +IKGLC EGRM EG+KLQAEMVGKGYKP +E+Y+AFI GY K+G+ E A KLR E++ +Q
Sbjct:    2 ALVQAKRIVFFIPTTTTHFCSVAAPT--PSADETIVTDAVSILKHHRFKSRWTHLRTLFPSGFTPSQFSQITVQLRNNPHLALRFFNFTVNRSLCHHNLLSYATIIHTLARSRQKTHALTLIQSAIRKFEDRNNNSLPNAPPLIFETLIRTYRTCDSAPFVFDLLIEGCLQSKSVERAMEIVRMLRSKGIYPMSSTCNSLIMSVSKHHGSIAGYETFNELFNSSGKFGSKKLAGVKVAVPNVHTYNIIMHAFYKDGLIENLEQVWSEMIVNNCVPNEYSYSILMAAYCDNERMEDAIRIWDKMGNDGLEHDILAYNTIIGGFCKFGNVQKAEEFFKEMGLSDKKCSSVTYEHLIKGYCKIGDTDSAMLLYKDMCRKGFTPFGIIVDLLIKELCVNNKVSEALMVSRFAV-KNNVVIKGGSYEFLIKGLCNEGRMEEGMKLQAEMVGKGYKPTAEIYSAFIIGYEKEGSLELAGKLRTELLGLQ 481    
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7LBC6 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4079502.1}))

HSP 1 Score: 524.628 bits (1350), Expect = 0.000e+0
Identity = 258/474 (54.43%), Postives = 344/474 (72.57%), Query Frame = 0
 
Query:   15 FTPPKHSIPF--SSSITPSILPDDKTVITTAVTILKHHRSKSRWTHLRSLFPNGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCCHSLSSYSTIIHVLARARQKSKAQSLIQTVLHKFPQAHLGDCPKYPK-IFESLMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSREI--------------------FGGVE--RDVSGN---------GVRVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFWPESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMVQIQ 454
            F  P  ++ F  +SS  PS   D+   + TAV++LKHHRSKSRWTHLR+LFP+GF P+Q S+IT+QLRNNPHLAL +F F++QHSLC HSL SY+TIIH LAR+RQKS A +LI++ L KFP        + P  IFE+L+ +YR CDSAPFVFDLL+ + LQ+KRI+QA+E+VRMLR++ I                      G E   ++ G+         GV++VVPNVHT+N+IM  FY++GL++N+E+VW +M+   C P++YSY++LMAAYC++ RM + +RVWEEM  +GL+ D +AYNTIIGG C+ GEV +AEEFF EM  +  +S+CVT+EHLI+GYCKIGDVDSA+LLY  M  K F P   TID +IK LC KN++SEA +  R A+K++++V KG SYE +IKGLC EGRM EG+KLQAEMVG+GY PNS +Y+AFI+GY K+GN+E A KL+ E+  I+
Sbjct:   13 FLNPTTNLRFCSASSQPPS---DNDPAVATAVSVLKHHRSKSRWTHLRTLFPSGFDPSQFSQITIQLRNNPHLALRFFLFSIQHSLCHHSLLSYATIIHTLARSRQKSHALALIKSALRKFPDVDTNSPLRTPPLIFETLITTYRTCDSAPFVFDLLIKACLQSKRINQAIEIVRMLRTKGISPMISTCNSLIMSVSKHHGSIAGYEVYNELLGSTRKFGDQKLGVKIVVPNVHTYNIIMHSFYKDGLIENLEQVWSDMIVNNCLPSAYSYNILMAAYCDNGRMEETMRVWEEMRNEGLKHDAMAYNTIIGGLCEAGEVDKAEEFFKEMGLDGEESTCVTYEHLIAGYCKIGDVDSAMLLYNDMRRKEFTPLGSTIDVLIKELCEKNKVSEALKVSRFAMKRNNVVMKGESYEHLIKGLCNEGRMDEGMKLQAEMVGRGYDPNSGIYSAFINGYEKEGNKELAAKLKLELQSIK 483    
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GQG7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7138535.1}))

HSP 1 Score: 523.087 bits (1346), Expect = 0.000e+0
Identity = 267/455 (58.68%), Postives = 335/455 (73.63%), Query Frame = 0
 
Query:   37 KTVITTAVTILKHHRSKSRWTHLRSLFP-NGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCCHSLSSYSTIIHVLARARQ-KSKAQSLIQTVLHKFPQAHLGDCPKYPKIFESLMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSR------------------------------EIFG-GVERDVSGNGVRVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFWPESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMVQIQEQQE 458
            +T+++T V IL HHRSKSRWTHLRSLFP  GFTP+QVS+ITL++RN PHLAL +F FT++H L   SL SYST+IH L+R+R  K +  +LIQ+ LH+FP     D  K PK+F+SL+++YR CDSAPFVFDLL+ + L + RIDQA+E+ RML+SR                              E+FG G E      GV  VVPNV TFNVIM+GF+++GLV NVEE+W EM   GC P+ YSYS+LMAAYCED +M +A+++WEEMG KGL+ D VAYNT+IGGFCKI EV RAEEFF EM  + V+ SCVTFEHLI+G+C+IGDVDSALLLYK MC KGF   S T+D VI+GL G+NR+SEA E+LRVAI+KH+I PK  SYE++IKGLCQEGRM E LKLQAEMVGKG++ N E+Y+AFI+   K+GN E A+ L+KEM + Q  +E
Sbjct:   25 QTLVSTVVQILTHHRSKSRWTHLRSLFPPTGFTPSQVSQITLRIRNKPHLALCFFLFTLRHFLSTPSLLSYSTLIHTLSRSRLLKPQTLTLIQSALHRFP-----DTDKTPKLFQSLVKTYRECDSAPFVFDLLIKACLGSTRIDQAMEIARMLKSRRISPSVSTCNSVIRSVSKYRGCYAGYDFYKEVFGFGDEGKSRTVGVFKVVPNVDTFNVIMLGFHQDGLVGNVEEIWGEMKALGCEPSGYSYSILMAAYCEDRKMGEAVKLWEEMGIKGLKPDSVAYNTMIGGFCKICEVGRAEEFFREMGLSGVECSCVTFEHLINGHCQIGDVDSALLLYKDMCRKGFRSGSSTVDAVIRGLGGENRVSEALEFLRVAIRKHEIAPKRKSYEVLIKGLCQEGRMEEALKLQAEMVGKGFELNCEIYSAFIEANTKEGNVELAEMLKKEMFETQMPKE 474    
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q5N2 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS02569.1}))

HSP 1 Score: 518.464 bits (1334), Expect = 5.724e-180
Identity = 255/470 (54.26%), Postives = 339/470 (72.13%), Query Frame = 0
 
Query:   19 KHSIPFSSSITPSILPDDKTVITTAVTILKHHRSKSRWTHLRSLFPNGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCCHSLSSYSTIIHVLARARQKSKAQSLIQTVLHKFPQAHLGDCPKYPKIFESLMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSREIFGGVE------RDV------------------------SGNGVRVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFWPESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMVQIQEQQE 458
            K +I   S   P      +T+++  V+ILKHHRSKSRWT + SL+P GFTP+  ++ITL+LRN PHLAL +F FT++ SLC HSL SYS +IH L+R+R KS+  +LIQ+ L KF ++      K PK+FE+L+++YR  DSAPFVF+LL+ + L++ R+D+A+E+ RMLRSR IF  V       R V                        S  GV  +VPNVHTFNVIM+GFY++G+ +NVEE+W+EM   GC PN+YSYS+LMA YCED +M +A+ + EEMG KG++ D V YNT+IGGFC+ GEV RAEE F EM  + ++SSCVTFEHLI GYCKIGDVDSA+L+YK MC +G  PESLT+D V+ GLCG+ R+SEA E+LRVA++KH++VPK  SYE++IKGLCQE R+ E LKLQAEMVGKG++PN E+YNAFID  +++ N E A+ L+KEM++ Q  +E
Sbjct:    7 KRTISSLSPPPPPPPTTSETLVSAVVSILKHHRSKSRWTQILSLYPTGFTPSASAQITLRLRNTPHLALRFFLFTLRRSLCPHSLLSYSALIHTLSRSRLKSQTLTLIQSALRKFSES---PPQKTPKLFETLVKTYREYDSAPFVFELLIKACLRSNRVDEAIEITRMLRSRGIFPTVRTCNSLIRSVLRCRGCYAGYDLYKEVFGFDGEVKSSVGVGKIVPNVHTFNVIMLGFYQDGVRENVEEIWEEMGELGCEPNAYSYSILMAGYCEDGKMGEAVILCEEMGIKGVKPDAVVYNTMIGGFCRTGEVGRAEELFREMGLSGLESSCVTFEHLIIGYCKIGDVDSAILVYKDMCRRGLRPESLTVDAVVGGLCGEKRVSEALEFLRVAMRKHEMVPKRKSYEVLIKGLCQEARVEEALKLQAEMVGKGFEPNLEIYNAFIDASMREENNELAEMLKKEMLETQMGKE 473    
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4KW88 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9447227.1}) (Fragment))

HSP 1 Score: 517.309 bits (1331), Expect = 1.103e-179
Identity = 259/411 (63.02%), Postives = 322/411 (78.35%), Query Frame = 0
 
Query:   56 WTHLRSLFP-NGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCCHSLSSYSTIIHVLARARQ-KSKAQSLIQTVLHKFPQAHLGDCPKYPKIFESLMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSR-----EIFG-GVERDVSGNGVRVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFWPESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMVQIQEQQE 458
            WTHLRSL P  GFTP+QVS+ITL++RNNPHLAL +F FT++HSL   SL SYST+IH L+R+R  K +  +LIQ+ L +FP     D  K PK+F+SL+++YR CDSAPFVFDLL+ + L++ RIDQA+E+ RML+SR     E+FG G E      GV  VVPNVHTFNVIM+GF+++GLV NVEEVW EM   GC P+ YSYS+LMAAYCED +M +A+++WEEMG KGL+ D VAYNT+I GFCKI EV RAEEFF EM  + V+ SCVTFEHLI+GYC+IGDVDSALLLYK MC KGF  ES T+D VI+GL G+NR+SEA E+LRVAI+KH+I PK  SYE++IKGLCQEGRM E LKLQAEMVGKG++PN E+Y+AFI+   K+GN E A+ L+KEM + Q  +E
Sbjct:   58 WTHLRSLSPPTGFTPSQVSQITLRIRNNPHLALRFFLFTLRHSLSTPSLLSYSTLIHTLSRSRLLKPQTLTLIQSALLRFP-----DTDKTPKLFQSLVKTYRECDSAPFVFDLLIKACLRSTRIDQAMEIARMLKSRGISPSEVFGFGDEGKSRTAGVFKVVPNVHTFNVIMLGFHQDGLVGNVEEVWGEMEALGCEPSGYSYSILMAAYCEDGKMGEAVKLWEEMGIKGLKPDSVAYNTMIAGFCKICEVGRAEEFFREMGLSGVECSCVTFEHLINGYCQIGDVDSALLLYKDMCRKGFRSESSTVDAVIRGLGGENRVSEALEFLRVAIRKHEIAPKRKSYEVLIKGLCQEGRMEEALKLQAEMVGKGFEPNCEIYSAFIEANTKEGNVELAEMLKKEMFETQMPKE 463    
BLAST of DCAR_022084 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251V333 ((Putative tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:OTG30015.1}))

HSP 1 Score: 514.998 bits (1325), Expect = 4.076e-178
Identity = 257/478 (53.77%), Postives = 336/478 (70.29%), Query Frame = 0
 
Query:   14 HFTPPKHSIPFSSSIT----PSILPDDKTVITTAVTILKHHRSKSRWTHLRSLFPNGFTPTQVSEITLQLRNNPHLALNYFNFTVQHSLCCHSLSSYSTIIHVLARARQKSKAQSLIQTVLHKFPQAHLGDCPKYPKI-FESLMRSYRVCDSAPFVFDLLVMSLLQAKRIDQAVEVVRMLRSREI--------------------FGGVE---------RDVSGN---GVRVVVPNVHTFNVIMVGFYREGLVQNVEEVWDEMLRRGCGPNSYSYSVLMAAYCEDERMVDALRVWEEMGGKGLERDLVAYNTIIGGFCKIGEVKRAEEFFGEMEFNRVDSSCVTFEHLISGYCKIGDVDSALLLYKVMCGKGFWPESLTIDEVIKGLCGKNRISEASEYLRVAIKKHDIVPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMVQIQ 454
            HF  P   + F SS +    P++   D TV T+AVT+LKHHRSKSRWTHLR+LFP+GFTP+Q S+ITL L NNPHLA N+F FT+QHSLC HS SSY++IIH LAR+R KS+  +LIQT + KF   +       P++ FE+L+++YR+ DSAPFVFDLL+ + L +KR++ A+E+VRMLRS+ +                      G E          + SG    GV++VVPNVHT+N++M  FY++GL++ +E VW +M+   C P+ YSYSVLMAAYC+D RM DA RVWEEMG  GLE D+VAYNT+IGGFC+ G V++AEEFF +M  +   SS VT+EHLI+GYCK+GDVDS +LL+K +C KGF P   TID +IK LC  N +SEA    R A+ K+++V  G SYE +IKGLC EGRM E +K+QAEMVGKGY+PNSE+Y+AFI GY K+GN E A KLR E +++Q
Sbjct:   10 HFITPTTILHFFSSSSAAADPTVTSADPTV-TSAVTVLKHHRSKSRWTHLRTLFPSGFTPSQFSQITLNLHNNPHLAFNFFQFTIQHSLCNHSPSSYASIIHTLARSRHKSQTLTLIQTAIRKFHDPNADFDSNTPRLMFETLVKTYRMFDSAPFVFDLLIKACLLSKRVEHAIEIVRMLRSKGLNPMISTCNSLILSVCKHHGSIAGYETYTELFESSSEFSGKKVAGVKIVVPNVHTYNIMMHAFYKDGLIERLERVWSDMIVNMCVPSEYSYSVLMAAYCDDGRMDDATRVWEEMGNGGLEHDVVAYNTMIGGFCEAGNVRKAEEFFMQMGLSEKKSSSVTYEHLINGYCKLGDVDSGMLLFKDLCRKGFTPIGFTIDLLIKELCVNNMVSEALMVSRFAL-KNNVVISGGSYEFLIKGLCNEGRMEESMKVQAEMVGKGYEPNSEIYSAFISGYEKEGNVELAGKLRTEFLEMQ 485    

HSP 2 Score: 43.5134 bits (101), Expect = 7.257e-2
Identity = 19/75 (25.33%), Postives = 39/75 (52.00%), Query Frame = 0
 
Query:  386 VPKGTSYELVIKGLCQEGRMGEGLKLQAEMVGKGYKPNSEVYNAFIDGYIKQGNEEQAKKLRKEMVQIQEQQEAI 460
            VP   SY +++   C +GRM +  ++  EM   G + +   YN  I G+ + GN  +A++   +M   +++  ++
Sbjct:  277 VPSEYSYSVLMAAYCDDGRMDDATRVWEEMGNGGLEHDVVAYNTMIGGFCEAGNVRKAEEFFMQMGLSEKKSSSV 351    
Match NameStatsDescription
A0A5J5BTE0E-Value: 0.000e+0, PID: 58.07(Uncharacterized protein {ECO:0000313|EMBL:KAA8545... [more]
A0A103YES3E-Value: 5.364e+0, PID: 55.84(Pentatricopeptide repeat-containing protein {ECO:... [more]
A0A2J6MCD2E-Value: 0.000e+0, PID: 55.58(Uncharacterized protein {ECO:0000313|EMBL:PLY9725... [more]
M1AEX2E-Value: 8.598e-3, PID: 53.40(Pentatricopeptide repeat-containing protein {ECO:... [more]
A0A5N6NWX5E-Value: 0.000e+0, PID: 54.45(Uncharacterized protein {ECO:0000313|EMBL:KAD5318... [more]
A0A6S7LBC6E-Value: 0.000e+0, PID: 54.43(Uncharacterized protein {ECO:0000313|EMBL:CAB4079... [more]
A0A834GQG7E-Value: 0.000e+0, PID: 58.68(Uncharacterized protein {ECO:0000313|EMBL:KAF7138... [more]
A0A2R6Q5N2E-Value: 5.724e-180, PID: 54.26(Pentatricopeptide repeat-containing protein {ECO:... [more]
A0A6A4KW88E-Value: 1.103e-179, PID: 63.02(Uncharacterized protein {ECO:0000313|EMBL:KAE9447... [more]
A0A251V333E-Value: 4.076e-178, PID: 53.77(Putative tetratricopeptide repeat (TPR)-like supe... [more]

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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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