MSIFFIFLLSLSAIISTTAGDPLSDEISALRAFKSSIKPSTIPSYSCLAS
WNFTSHPCSFPHTTHFICGLTCYNSRVTQLTLDPAGYSGTLSPLISKLTE
LTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLE
SLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIK
ANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSK
NKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYN
RLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNC
LKYCPASSSLCSKSQKATWICRQAYGKPRL*
| Relationships |
|---|
| The polypeptide, DCAR_021995, derives from mRNA, DCAR_021995. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7BZU3 ((Putative Leucine-rich repeat (LRR) family protein {ECO:0000313|EMBL:MPA73536.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA73536.1}))
HSP 1 Score: 489.574 bits (1259), Expect = 3.406e-171
Identity = 254/362 (70.17%), Postives = 293/362 (80.94%), Query Frame = 0
Query: 23 LSDEISALRAFKSSIKPSTIPSYSCLASWNFTSHPCSFPHTTHFICGLTCYNS----RVTQLTLDPAGYSGTLSPLISKLTELTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLESLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIKANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSKNKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYNRLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNCLKYCPASSSLCSKSQKATWICRQAY-GKPR 379
L +I+AL+AFK+SIKP+TIPSYSCLASWNF+S PCSFP THF CGLTC + RVTQLTLDPAGYSGTLSPLISKL +LT LD+S+NN FGPIP SLSSL+ LQ L LR NSFSG VPPS+ LK LESLDLS NSLSG LPN +NS SL RLD+S+NKLTGS+PKLPPNL ++A+KANSLSG LY++SF T+L+ VELSENS G +Q WFF LPSLQQVN S N FT V I KP N S+LVAVDLGFNK++ LP+NF YP+LSSL+L YNRLRGPIP EYSKK+ L+RLFLDGNYLNG+PP SG+T V +G+LGDNCL+ CP SS LC KSQK+T IC+QAY GKPR
Sbjct: 29 LPSDIAALQAFKASIKPTTIPSYSCLASWNFSSDPCSFPRITHFTCGLTCATNSNPYRVTQLTLDPAGYSGTLSPLISKLAQLTILDLSDNNLFGPIPASLSSLSILQTLILRSNSFSGSVPPSITNLKSLESLDLSRNSLSGPLPNPMNSLRSLRRLDISFNKLTGSLPKLPPNLLELALKANSLSGSLYKSSFDGLTQLEVVELSENSFSGTIQAWFFLLPSLQQVNFSNNSFTRVEIWKPTNLNSDLVAVDLGFNKLEDKLPINFSTYPLLSSLSLRYNRLRGPIPWEYSKKESLKRLFLDGNYLNGTPPKGFFSGETSV-SGSLGDNCLQICPVSSQLCLKSQKSTSICQQAYGGKPR 389
Match: A0A6A4KVX9 (LRRNT_2 domain-containing protein {ECO:0000259|Pfam:PF08263} (Fragment))
HSP 1 Score: 486.878 bits (1252), Expect = 3.415e-170
Identity = 250/360 (69.44%), Postives = 293/360 (81.39%), Query Frame = 0
Query: 26 EISALRAFKSSIKPSTIPSYSCLASWNFTSHPCSFPHTTHFICGLTCYNS----RVTQLTLDPAGYSGTLSPLISKLTELTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLESLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIKANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSKNKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYNRLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNCLKYCPASSSLCSKSQKATWICRQAY--GKPR 379
+I+AL+AFK+SIKP+TIPSYSCLASWNFTS PCSFP THF CGLTC + RVTQLTLDPAGYSGTLSPL+S+LT+L HLD+S NNFFGPIP SLSSL NLQ LSLR NSFSG +PPS+ + L+SLD + NSLSGSLPN LNS +L RLDLS+NKL GS+PKLPPNL ++AIKANSLSG LYQ+SF T+L+ VELS+NSL G L+ WFF LPSLQQV+L+ N T V IS+P +S LVAV+LGFNKI+G +P N YPMLSSL+L YNRLRGPIPLE+ KKQ+LRRL+LDGN+LNG+PP+ SG+T V +G+LGDNCL+ CP SS LC KSQK T ICRQAY GKPR
Sbjct: 27 DIAALQAFKASIKPTTIPSYSCLASWNFTSDPCSFPKVTHFTCGLTCTTTSNPFRVTQLTLDPAGYSGTLSPLVSRLTQLVHLDLSGNNFFGPIPASLSSLPNLQSLSLRSNSFSGPIPPSITNFRSLQSLDFAGNSLSGSLPNNLNSMMNLRRLDLSFNKLIGSLPKLPPNLLELAIKANSLSGSLYQSSFNGLTQLEVVELSQNSLSGTLESWFFLLPSLQQVDLANNSLTRVEISRPT--DSELVAVELGFNKIEGYVPKNLSFYPMLSSLSLRYNRLRGPIPLEFGKKQKLRRLYLDGNFLNGTPPAVFFSGETGV-SGSLGDNCLQSCPGSSELCLKSQKPTSICRQAYGGGKPR 383
Match: A0A834G6H2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7126732.1}))
HSP 1 Score: 472.241 bits (1214), Expect = 1.556e-164
Identity = 243/360 (67.50%), Postives = 291/360 (80.83%), Query Frame = 0
Query: 26 EISALRAFKSSIKPSTIPSYSCLASWNFTSHPCSFPHTTHFICGLTCYNS----RVTQLTLDPAGYSGTLSPLISKLTELTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLESLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIKANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSKNKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYNRLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNCLKYCPASSSLCSKSQKATWICRQAY--GKPR 379
+I+AL+AFK+SIKP+TIPSYSCLASWNFTS PCSFP THF CGLTC + RVTQLTLDPAGYSGTLSPL+S+LT+L HLD+S NNFFGPIP SLSSL NLQ L LR NSFSG +PPS+ + L++LD + NSLSGSLPN LNS +L RLDLS+NKLT S+PKLPPNL ++A+KANSLSG L ++SF T+L+ +ELS+NSL G L+ WF LPSLQQV+L+ N T V IS+P +S+LVAV+LGFNKI+G +P N YPMLSSL+L YNRLRGPIPLE+ KKQ+LRRL+LDGN+LNG+PP+ SG+T V +G+LGDNCL+ CP SS LC KSQK T ICRQAY GKPR
Sbjct: 26 DIAALQAFKASIKPTTIPSYSCLASWNFTSDPCSFPKVTHFTCGLTCTTTSNPFRVTQLTLDPAGYSGTLSPLVSRLTQLVHLDLSGNNFFGPIPASLSSLPNLQSLVLRSNSFSGPIPPSITNFRSLQTLDFAGNSLSGSLPNNLNSMMNLRRLDLSFNKLTWSLPKLPPNLLELAMKANSLSGSLNKSSFNGLTQLEVIELSQNSLSGTLESWFLLLPSLQQVDLANNSLTRVEISRPT--DSDLVAVELGFNKIEGYVPKNLSFYPMLSSLSLRYNRLRGPIPLEFGKKQKLRRLYLDGNFLNGTPPAVFFSGETGV-SGSLGDNCLQSCPGSSELCLKSQKPTSICRQAYGGGKPR 382
Match: A0A7J0DQN4 ((Leucine-rich repeat (LRR) family protein {ECO:0000313|EMBL:GFS40065.1}))
HSP 1 Score: 471.47 bits (1212), Expect = 3.936e-164
Identity = 255/384 (66.41%), Postives = 295/384 (76.82%), Query Frame = 0
Query: 6 IFLLSLSAIISTTA-----GDPLSDEISALRAFKSSIKPSTIPSYSCLASWNFTSHPCSFPHTTHFICGLTCYNS----RVTQLTLDPAGYSGTLSPLISKLTELTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLESLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIKANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSKNKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYNRLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNCLKYCPASSSLCSKSQKATWICRQAY-GKPR 379
+FL SL ++I+TT LS +I+AL+AFKSSIKP+TIPSYSCLASWNFTS PCS P THF CG+TC RVT+LTLDPA YSGTLSPL+S+LT+LT LD ++N+FFGPIP SLSSL NLQ +LR N FSG VPPS+ LK L+SLD SHN LSGSLPNTLNS T+L R+DLS+NK TG IPKLP NL ++AIKANSLSG LY++SF TRL+ VELSENS+ G L+ WFF LPSLQQV+L+ N T V I KP S+LVAVDLGFNKI+G LP NF YP LSSL+L YN LRGPIP E+S RL+RLFLDGN+LNG PP L SG T V +G+LGDNCL+ CP SS LC KSQK T ICRQAY GKPR
Sbjct: 7 LFLFSLFSLITTTTTVSAQSQTLSSDIAALQAFKSSIKPNTIPSYSCLASWNFTSDPCSAPRVTHFTCGVTCSAVSNTLRVTRLTLDPAAYSGTLSPLLSRLTQLTELDFADNSFFGPIPASLSSLRNLQTFNLRSNLFSGSVPPSISNLKSLQSLDFSHNLLSGSLPNTLNSLTNLRRIDLSFNKFTGLIPKLPQNLLELAIKANSLSGSLYKSSFDGLTRLEVVELSENSISGTLEAWFFLLPSLQQVDLANNSLTRVEIWKPATLNSDLVAVDLGFNKIEGYLPKNFSDYPRLSSLSLRYNWLRGPIPREFS---RLKRLFLDGNFLNGKPPDGLFSGVTSV-SGSLGDNCLQSCPVSSQLCLKSQKPTSICRQAYGGKPR 386
Match: A0A6P6VU16 ((probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 {ECO:0000313|RefSeq:XP_027106000.1}))
HSP 1 Score: 469.544 bits (1207), Expect = 2.421e-163
Identity = 247/378 (65.34%), Postives = 293/378 (77.51%), Query Frame = 0
Query: 3 IFFIFLLSLSAIISTTAGDPLSDEISALRAFKSSIKPSTIPSYSCLASWNFTSHPCSFPHTTHFICGLTCYNSRVTQLTLDPAGYSGTLSPLISKLTELTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLESLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIKANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSKNKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYNRLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNCLKYCPASSSLCSKSQKATWICRQAY-GKPR 379
F + LL S IIS T+G S +++AL+AFK++IKPS+I YSCL SWNF++ PCS P +F CGL C +RVTQLTLDPA Y+GTL+PLISKLT+L LD+S N F GPIPP L SLANLQ L LRFNSFSG VPPS+ ALK LE++DLSHN LSGSLPN+ +S SL RLDLSYNKLTGS+PKLPPNL ++AIKAN LSG LY+TSF T+L+ VELS NS G L+ WFF LP+LQQV+L+ N FT V I KP N S+LVAVDLGFN+IQG L VNF YP+LSSL+L YNR RGPIP EYSK++ L+RLFLDGN+LNGSPP+ S T V +G+LGDNCL+ CP SS LC KSQK + IC+ AY GKPR
Sbjct: 14 FFLLILLCFSFIISATSGLTFSSDVTALKAFKAAIKPSSIKPYSCLGSWNFSNDPCSIPRA-YFSCGLLCSGNRVTQLTLDPADYAGTLTPLISKLTQLVTLDLSTNKFSGPIPP-LYSLANLQTLVLRFNSFSGTVPPSLTALKSLETVDLSHNYLSGSLPNSWSSIGSLRRLDLSYNKLTGSLPKLPPNLIELAIKANYLSGPLYRTSFQGLTQLEVVELSGNSFAGTLEAWFFLLPALQQVDLANNSFTRVDIWKPTNGNSDLVAVDLGFNRIQGYLSVNFAAYPLLSSLSLRYNRFRGPIPWEYSKRESLKRLFLDGNFLNGSPPAGFFSAGTSV-SGSLGDNCLQKCPVSSQLCLKSQKPSAICQHAYGGKPR 388
Match: A0A068TML4 (LRRNT_2 domain-containing protein {ECO:0000259|Pfam:PF08263})
HSP 1 Score: 469.159 bits (1206), Expect = 3.113e-163
Identity = 249/378 (65.87%), Postives = 295/378 (78.04%), Query Frame = 0
Query: 4 FFIF-LLSLSAIISTTAGDPLSDEISALRAFKSSIKPSTIPSYSCLASWNFTSHPCSFPHTTHFICGLTCYNSRVTQLTLDPAGYSGTLSPLISKLTELTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLESLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIKANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSKNKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYNRLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNCLKYCPASSSLCSKSQKATWICRQAY-GKPR 379
FF+F LL S IIS T+G S +++AL+AFK++IKPS+I YSCL SWNF++ PCS P +F CGL C +RVTQLTLDPA Y+GTL+PLISKLT+L LD+S N F GPIPP L SLANLQ L LRFNSFSG VPPS+ ALK LE++DLSHN LSGSLPN+ +S SL RLDLSYNKLTGS+PKLPPNL ++AIKAN LSG LY+TSF T+L+ VELS NS G L+ WFF LP+LQQV+L+ N FT V I KP N S+LVAVDLGFN+IQG L VNF YP+LSSL+L YNR RGPIP EYSK++ L+RLFLDGN+LNGSPP+ S T V +G+LGDNCL+ CP SS LC KSQK + IC+ AY GKPR
Sbjct: 14 FFLFILLCFSFIISATSGLTFSSDVTALKAFKAAIKPSSIKPYSCLGSWNFSNDPCSIPRA-YFSCGLLCSGNRVTQLTLDPADYAGTLTPLISKLTQLVTLDLSTNKFSGPIPP-LYSLANLQTLVLRFNSFSGTVPPSLTALKSLETVDLSHNYLSGSLPNSWSSIGSLRRLDLSYNKLTGSLPKLPPNLIELAIKANYLSGPLYRTSFQGLTQLEVVELSGNSFAGTLEAWFFLLPALQQVDLANNSFTRVDIWKPTNGNSDLVAVDLGFNRIQGYLSVNFAAYPLLSSLSLRYNRFRGPIPWEYSKRESLKRLFLDGNFLNGSPPAGFFSAGTSV-SGSLGDNCLQKCPVSSQLCLKSQKPSAICQHAYGGKPR 388
Match: A0A2R6Q5Y1 ((Leucine-rich repeat receptor protein kinase {ECO:0000313|EMBL:PSS02685.1}))
HSP 1 Score: 464.151 bits (1193), Expect = 3.289e-161
Identity = 251/375 (66.93%), Postives = 289/375 (77.07%), Query Frame = 0
Query: 14 IISTTA----GDPLSDEISALRAFKSSIKPSTIPSYSCLASWNFTSHPCSFPHTTHFICGLTCYNS----RVTQLTLDPAGYSGTLSPLISKLTELTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLESLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIKANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSKNKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYNRLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNCLKYCPASSSLCSKSQKATWICRQAY-GKPR 379
I +TTA LS +I+AL+AFKSSIKP+TIPSYSCLASWNFTS PCS P THF CG+TC RVT+LTLDPA YSGTLSPL+S+LT+LT LD ++N+FFGPIP SLSSL NLQ +LR N FSG VPPS+ LK L+SLD SHN LSGSLPNTLNS T+L R+DLS+NK TG IPKLP NL ++AIKANSLSG LY++SF T+L+ VELSENS+ G L+ WFF LPSLQQV+L+ N T V I KP S+LVAVDLGFNKI+G LP NF YP LSSL+L YN LRGPIP E+S RL+RLFLDGN+LNG PP L SG T V +G+LGDNCL+ CP SS LC KSQK T ICRQAY GKPR
Sbjct: 19 ITTTTAVSAQSQTLSSDIAALQAFKSSIKPNTIPSYSCLASWNFTSDPCSAPRVTHFTCGVTCSAVSNTLRVTRLTLDPASYSGTLSPLLSRLTQLTELDFADNSFFGPIPASLSSLRNLQTFNLRSNLFSGSVPPSISNLKSLQSLDFSHNLLSGSLPNTLNSLTNLRRIDLSFNKFTGLIPKLPQNLLELAIKANSLSGSLYKSSFDGLTQLEVVELSENSISGTLEAWFFLLPSLQQVDLANNSLTRVEIWKPGTLNSDLVAVDLGFNKIEGYLPKNFSEYPRLSSLSLRYNWLRGPIPREFS---RLKRLFLDGNFLNGKPPDGLFSGVTSV-SGSLGDNCLQSCPVSSQLCLKSQKPTSICRQAYGGKPR 389
Match: A0A2J6LYB2 ((Uncharacterized protein {ECO:0000313|EMBL:PLY92317.1}))
HSP 1 Score: 463.381 bits (1191), Expect = 4.143e-161
Identity = 242/371 (65.23%), Postives = 290/371 (78.17%), Query Frame = 0
Query: 5 FIFLLSLSAIISTTAGDPLSDEISALRAFKSSIKPSTIPSYSCLASWNFTSHPCSFPHTTHFICGLTCYNSRVTQLTLDPAGYSGTLSPLISKLTELTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLESLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIKANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSKNKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYNRLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNCLKYCPASSSLCSKSQKATWICRQAY 375
F+FLL LS + + ++ LS +I+AL+A KSSIKP+TIPSY+CL SW+FTS PCS P THF+CG+TC +RVTQLTLDPAGY GTLSPL+S+LT+L +D+++N F GPIP SL L NLQ L+L NSFSG +PPSV LKK+++LD+S NSLSGSLPNTL S + LTRLDLS+NKLTG IP LP N+ Q+A+K NSLSG+L + SF T+L+TVELSENSL G + WFF +PSLQQVNL+KN FTGV I KP +SNLVAVDLGFN+I G P NF YPML+SLTLSYN+LRG IP EYSKK L RLFLDGNYL G PP + SGKT + +G+LGDNCLK CP SS LC KSQK IC+QAY
Sbjct: 8 FLFLL-LSTVAAASSITTLSSDIAALKAIKSSIKPTTIPSYTCLHSWDFTSDPCSPPRVTHFLCGVTCSGNRVTQLTLDPAGYVGTLSPLVSQLTQLITIDLTDNKFSGPIPSSLFFLPNLQTLNLGSNSFSGVIPPSVSNLKKIQTLDISRNSLSGSLPNTLTSLSQLTRLDLSFNKLTGPIPGLPKNIIQLALKGNSLSGYLQKQSFQGLTQLETVELSENSLAGTIPGWFFLIPSLQQVNLAKNSFTGVEIFKPI--DSNLVAVDLGFNRITGYPPTNFSAYPMLASLTLSYNKLRGRIPWEYSKKPTLSRLFLDGNYLIGLPPKEFFSGKTSI-SGSLGDNCLKLCPVSSELCVKSQKPLSICKQAY 374
Match: A0A7J9G3C2 ((Uncharacterized protein {ECO:0000313|EMBL:MBA0791644.1}))
HSP 1 Score: 462.996 bits (1190), Expect = 6.629e-161
Identity = 237/360 (65.83%), Postives = 289/360 (80.28%), Query Frame = 0
Query: 23 LSDEISALRAFKSSIKPSTIPSYSCLASWNFTSHPCSFPHTTHFICGLTCY--NSRVTQLTLDPAGYSGTLSPLISKLTELTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLESLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIKANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSKNKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYNRLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNCLKYCPASSSLCSKSQKATWICRQAY-GKPR 379
L +ISAL+AFKSSIK S+IPS+SCLASW+F+ PC+ PH T FICG++C +R+TQ+TLDP GYSG L+PLIS+LT+LT LD+S+N FFG IP S+SSL NLQ L+L NSFSG +P SV ALK LE+LDLSHN+LSG LP +LNS TSL RLDLSYNKLTG +PKLP NL ++A+KANSLSG++ +++F TRL+ VELS+NS G L WFF LPSLQQV+L+ N FT V ISKP S+LVAV+LGFNKI+GNLPVNF YPMLSSL+L YNRLRG IPL YSKK+ LRRLFLDGN+L G+PP++ +G TEV G+LGDNCL+ CPA+S LCS QK+ IC++AY GKPR
Sbjct: 23 LPQDISALKAFKSSIKQSSIPSWSCLASWDFSDDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGQLTPLISQLTQLTTLDLSDNYFFGRIPSSISSLRNLQTLTLTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPFNLLELALKANSLSGYVSKSTFDGLTRLEVVELSDNSFSGTLGAWFFLLPSLQQVDLANNSFTHVEISKPAGGNSDLVAVNLGFNKIEGNLPVNFADYPMLSSLSLRYNRLRGAIPLGYSKKKSLRRLFLDGNFLIGTPPAEFFAGDTEV-TGSLGDNCLRGCPANSQLCSPRQKSYAICKRAYSGKPR 381
Match: A0A6P6WAQ9 ((probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 {ECO:0000313|RefSeq:XP_027112548.1}))
HSP 1 Score: 463.381 bits (1191), Expect = 6.961e-161
Identity = 246/378 (65.08%), Postives = 294/378 (77.78%), Query Frame = 0
Query: 4 FFIF-LLSLSAIISTTAGDPLSDEISALRAFKSSIKPSTIPSYSCLASWNFTSHPCSFPHTTHFICGLTCYNSRVTQLTLDPAGYSGTLSPLISKLTELTHLDISENNFFGPIPPSLSSLANLQILSLRFNSFSGWVPPSVFALKKLESLDLSHNSLSGSLPNTLNSATSLTRLDLSYNKLTGSIPKLPPNLYQIAIKANSLSGFLYQTSFTESTRLDTVELSENSLVGVLQPWFFNLPSLQQVNLSKNKFTGVVISKPQNPESNLVAVDLGFNKIQGNLPVNFLLYPMLSSLTLSYNRLRGPIPLEYSKKQRLRRLFLDGNYLNGSPPSDLISGKTEVLAGNLGDNCLKYCPASSSLCSKSQKATWICRQAY-GKPR 379
FF+F LL S IIS T+G S +++AL+AFK++IKPS+I YSCL SWNF++ PCS P +F CGL C +RVTQLTLDPA Y+GTL+PLISKLT+L LD+S N F GPIP L SL NLQ L LRFNSFSG VPPS+ ALK LE++DLSHN LSGSLPN+ +S SL RLDLSYNKLTGS+PKLPPNL ++AIKAN LSG LY+TSF T+L+ VELSENS G L+ WFF LP+LQQV+L+ N FT V I KP+N S+LVAVDLGFN+I+G L VNF YP+LSSL+L YNR RGPIP YSK++ L+RLFLDGN+LNGSPP+ S T V +G+LGDNCL+ CP SS LC KSQK + IC+ AY GKPR
Sbjct: 14 FFLFILLCFSFIISATSGLTFSSDVTALKAFKAAIKPSSIKPYSCLGSWNFSNDPCSIPRA-YFSCGLLCSGNRVTQLTLDPADYAGTLTPLISKLTQLLTLDLSTNKFSGPIP-QLYSLTNLQTLVLRFNSFSGTVPPSLTALKSLETVDLSHNYLSGSLPNSWSSIGSLRRLDLSYNKLTGSLPKLPPNLIELAIKANYLSGPLYRTSFQGLTQLEVVELSENSFSGTLEAWFFLLPALQQVDLANNSFTRVDIWKPKNGNSDLVAVDLGFNRIEGYLSVNFAAYPLLSSLSLRYNRFRGPIPWVYSKRESLKRLFLDGNFLNGSPPAGFFSAGTSV-SGSLGDNCLQKCPVSSQLCLKSQKPSAICQHAYGGKPR 388
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BZU3 | E-Value: 3.406e-171, PID: 70.17 | (Putative Leucine-rich repeat (LRR) family protein... [more] |
| A0A6A4KVX9 | E-Value: 3.415e-170, PID: 69.44 | LRRNT_2 domain-containing protein {ECO:0000259|Pfa... [more] |
| A0A834G6H2 | E-Value: 1.556e-164, PID: 67.50 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7126... [more] |
| A0A7J0DQN4 | E-Value: 3.936e-164, PID: 66.41 | (Leucine-rich repeat (LRR) family protein {ECO:000... [more] |
| A0A6P6VU16 | E-Value: 2.421e-163, PID: 65.34 | (probably inactive leucine-rich repeat receptor-li... [more] |
| A0A068TML4 | E-Value: 3.113e-163, PID: 65.87 | LRRNT_2 domain-containing protein {ECO:0000259|Pfa... [more] |
| A0A2R6Q5Y1 | E-Value: 3.289e-161, PID: 66.93 | (Leucine-rich repeat receptor protein kinase {ECO:... [more] |
| A0A2J6LYB2 | E-Value: 4.143e-161, PID: 65.23 | (Uncharacterized protein {ECO:0000313|EMBL:PLY9231... [more] |
| A0A7J9G3C2 | E-Value: 6.629e-161, PID: 65.83 | (Uncharacterized protein {ECO:0000313|EMBL:MBA0791... [more] |
| A0A6P6WAQ9 | E-Value: 6.961e-161, PID: 65.08 | (probably inactive leucine-rich repeat receptor-li... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |