MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVV
GDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKA
AILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVG
GRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLA
HNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVV
FGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSEN
PIKSVIGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFSPGP
SVSKPSSEDNPPR*
| Relationships |
|---|
| The polypeptide, DCAR_019366, derives from mRNA, DCAR_019366. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5J5AYI9 (Metallophos domain-containing protein {ECO:0000259|Pfam:PF00149})
HSP 1 Score: 483.026 bits (1242), Expect = 2.032e-169
Identity = 243/357 (68.07%), Postives = 281/357 (78.71%), Query Frame = 0
Query: 1 MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSS---ENPIKSVI----GTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFSPGP 350
M ALLHAP C+ S PS P S K K NRF MA+SVRIAVVGDVHD WNLEED KAL+LL+PDLVLFTGD+GNE NV+LV SIADL AKA ILGNHDAW+T +F+ R+KD VQLQL+CLG EHVGY+RLDFP LKLSIVGGRPFS GG++LFR +LL++RYGV M SAKRIY+AA+GTPEDH +I LAHNGPTGLGS +NDICG+DW F GGDHGDPDLA+A+S LKETTK S+PLVVFGHMHK+LA GNGLRKM+V+G DN+IYLNGA+VPRVK L + + N I I GT RA TLVEI+ G+LEKI ETW+SV+GDK L EE+ILF+ GP
Sbjct: 1 MFMSALLHAPTLCCLFGS-CPS-PSSSKLK------NRFLMASSVRIAVVGDVHDDWNLEEDTKALQLLRPDLVLFTGDFGNE-NVELVRSIADLKFAKAIILGNHDAWSTQQFAQRRKDRVQLQLECLGEEHVGYRRLDFPMLKLSIVGGRPFSCGGEQLFRKRLLAERYGVHDMNGSAKRIYEAAIGTPEDHLVILLAHNGPTGLGSNLNDICGKDWVFGGGDHGDPDLANAISHLKETTKFSIPLVVFGHMHKELAHGNGLRKMIVLGTDNTIYLNGAIVPRVKSLGDEQKTNNRSFMNNEIPVTIPEAEGTVRAFTLVEIVDGKLEKIAETWISVIGDKTTLEEENILFTTGP 348
Match: A0A5B7BPR7 (Metallophos domain-containing protein {ECO:0000259|Pfam:PF00149})
HSP 1 Score: 482.256 bits (1240), Expect = 3.562e-169
Identity = 242/357 (67.79%), Postives = 282/357 (78.99%), Query Frame = 0
Query: 1 MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDAT-----SSENPIKS--VIGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFSPGP 350
M ALLHAP C+ S+ P S KRK FSMA+SVRIAVVGDVHD WNL+ED KAL+LL+PDLVLFTGD+GNE NV+LV+SIADL AKA ILGNHDAW+T +FS R+KD VQLQL+CLG EHVGY+RLDFP LKLSIVGGRPFS GG++LFR +LL+ RYGV M SAKR+Y+AALGTPEDH +IFLAHNGPTGLGS +NDICG+DW F GGDHGDPDLA A+ LKETT+ S+PLVVFGHMHK+LA GNGLRKM+V+G DN+IYLNGA+VPRVK+L + ++E P+ + GT RA TLVEI+ G+LEKI ETWVSV+GDK L EEHILFS GP
Sbjct: 1 MFISALLHAPTLCCLFGSSPSHSPKSSKRK-------NFSMASSVRIAVVGDVHDDWNLQEDTKALQLLRPDLVLFTGDFGNE-NVELVQSIADLEFAKAVILGNHDAWSTQQFSERRKDRVQLQLECLGEEHVGYRRLDFPMLKLSIVGGRPFSCGGEQLFRKRLLAARYGVHDMNGSAKRVYEAALGTPEDHLVIFLAHNGPTGLGSNLNDICGKDWVFGGGDHGDPDLAHAICHLKETTQFSIPLVVFGHMHKELAYGNGLRKMIVLGADNTIYLNGAIVPRVKRLGDEQGTNNRGFMNNETPVTTPEAEGTVRAFTLVEIVDGKLEKIAETWVSVIGDKTTLEEEHILFSTGP 349
Match: A0A836Y7K1 ((Calcineurin metallo-phosphoesterase superfamily protein {ECO:0000313|EMBL:KAG5243770.1}))
HSP 1 Score: 465.307 bits (1196), Expect = 1.531e-162
Identity = 230/349 (65.90%), Postives = 274/349 (78.51%), Query Frame = 0
Query: 5 ALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKH--DATSSENPIKSVI-----GTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILF 346
AL+HAP P +S ++ + P SMA S RIAVVGDVHD WNLEED+KAL+LL+PDLVLFTGD+GNE NV+LV+SIADL + K ILGNHDAW T FS ++KD VQ QL+CLG EHV Y+RLDFPTLKLS+VGGRPFS GG+++FR LLS RYGV+ M+ SA RIY AALGTPEDH +IFLAHNGPTGLGS +NDICG+DW F GGDHGDPDLA A+S++KETTK++ PLVVFGHMHK+LA GNGLRKM+VVG D +IYLNGA+VPRV++LV++ D+T+S N SVI GT RA TLVEIL GR++KI ETWVSV D+ AL EEH+LF
Sbjct: 8 ALIHAPSPCFLSATHRSTSSPDPTTVRSS------SMAASARIAVVGDVHDDWNLEEDSKALQLLQPDLVLFTGDFGNE-NVELVQSIADLNLPKVVILGNHDAWKTQHFSGKRKDGVQRQLECLGEEHVAYKRLDFPTLKLSVVGGRPFSCGGEQIFRRSLLSARYGVQDMDGSADRIYNAALGTPEDHMVIFLAHNGPTGLGSNLNDICGKDWVFGGGDHGDPDLAQAISRVKETTKINTPLVVFGHMHKELAYGNGLRKMIVVGADKTIYLNGAIVPRVRRLVVEQGTDSTNSMNNETSVISPGSRGTLRAFTLVEILEGRVDKIAETWVSVTDDETALEEEHVLF 349
Match: A0A2K2A4G7 (Metallophos domain-containing protein {ECO:0000259|Pfam:PF00149})
HSP 1 Score: 462.225 bits (1188), Expect = 2.244e-161
Identity = 229/352 (65.06%), Postives = 271/352 (76.99%), Query Frame = 0
Query: 5 ALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKH--DATSSENPIKSVI-----GTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFSPG 349
AL+HAP P +S + + P SMA S RIAVVGDVHD WNLEED+KAL+LL+PDLVLFTGD+GNE NV+LV+SIADL + K ILGNHD+W T FS ++KD VQ QL+CLG EHV Y+RLDFPTLKLS+VGGRPFS GG+++FR LLS RYGV+ M+ SA RIY AALGTPEDH +IFLAHNGPTGLGS +NDICG+DW F GGDHGDPDLA A+S LKETTK+S+PLVVFGHMHK+LA GNGLRKM+VVG D +IYLNGA+VPRV++LV + D T+ N SV GT RA TLVEIL GR++KI ETWVSV+ D+ A+ EEH+LF G
Sbjct: 6 ALIHAPAPCFISTTQRSTSSPDPTTVRSS------SMAASARIAVVGDVHDDWNLEEDSKALQLLQPDLVLFTGDFGNE-NVELVQSIADLNLPKVVILGNHDSWKTQHFSGKRKDGVQRQLECLGEEHVAYKRLDFPTLKLSVVGGRPFSCGGEQIFRRSLLSARYGVQDMDGSADRIYNAALGTPEDHMVIFLAHNGPTGLGSNLNDICGKDWVFGGGDHGDPDLAQAISHLKETTKISIPLVVFGHMHKELAYGNGLRKMIVVGADKTIYLNGAIVPRVRRLVAEQGTDNTNFMNNETSVFSPGSRGTMRAFTLVEILEGRVDKIAETWVSVIEDETAIGEEHVLFQRG 350
Match: A0A1U8AIG7 ((uncharacterized protein LOC104603343 isoform X1 {ECO:0000313|RefSeq:XP_010265657.1}))
HSP 1 Score: 457.603 bits (1176), Expect = 1.041e-159
Identity = 220/312 (70.51%), Postives = 261/312 (83.65%), Query Frame = 0
Query: 35 KKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSVIGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILF 346
++NR SM +SVRIAVVGDVHD WNL+ED +AL+ L+PDLVLFTGD+GNE NV+LV SIADL IAKA ILGNHD+WNT +FS + KD VQLQL+CLG EHVGY RLDFP LK+S+VGGRPFS GG+ LFR +LLS RYGV M+ SAK+IYKAALGTPE SI+FLAHNGP GLGS++NDICG+DW F GGDHGDPDLA A+S LKETT+ S+PLVVFGHMHK+LA GNGLRKM+VVG DN+IYLNGA+VPRV+ + + TS+ P+ + GT RA TLVEIL G+L +I ETWVSV+GDK A+ EEHIL+
Sbjct: 28 QRNRVSMPSSVRIAVVGDVHDDWNLQEDERALQFLQPDLVLFTGDFGNE-NVELVRSIADLKIAKAVILGNHDSWNTQQFSKKGKDHVQLQLECLGEEHVGYSRLDFPMLKMSVVGGRPFSCGGESLFRKRLLSARYGVDDMDGSAKKIYKAALGTPEGLSIVFLAHNGPIGLGSDINDICGKDWVFGGGDHGDPDLARAISLLKETTQFSIPLVVFGHMHKELAYGNGLRKMLVVGADNTIYLNGAIVPRVRSFM--KEETSTYAPVST--GTVRAFTLVEILDGKLVRIAETWVSVIGDKMAIEEEHILY 334
Match: A0A6J0ZN03 ((uncharacterized protein LOC110410707 isoform X1 {ECO:0000313|RefSeq:XP_021276238.1}))
HSP 1 Score: 454.907 bits (1169), Expect = 2.037e-158
Identity = 229/355 (64.51%), Postives = 270/355 (76.06%), Query Frame = 0
Query: 1 MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATS--VRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSVI-------GTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILF 346
MLS AL HAP + +S P P R MA S VRIAVVGDVHD W+LEED KAL+ LKPDLVLFTGD+GNE NV+LV+++A L KA ILGNHD+WNT +FS ++KD VQLQL+CLG EHVGY+RLDFP LKLSIVGGRPFS GGQ++FR +L+S RYGV+ ME SAKRIY+AALGTPEDH +IFLAHNGPTGLGSE+NDICG+DW F GGDHGDPDLA A+S LKET+ S+ LVVFGHMHK+LADGNGLRKM+VVG DN IYLNGA+VPRVK+ + K A + + GTKRA TL+EIL G+++KI E WVSV+G++ L EEHILF
Sbjct: 1 MLS-ALTHAPTLRFLCSSPQPKPVPC-----------RSCMADSSLVRIAVVGDVHDDWDLEEDTKALQFLKPDLVLFTGDFGNE-NVELVQNVAALNFPKAVILGNHDSWNTQQFSGKRKDRVQLQLECLGQEHVGYKRLDFPLLKLSIVGGRPFSCGGQQIFRKRLVSARYGVQDMEGSAKRIYEAALGTPEDHLVIFLAHNGPTGLGSELNDICGKDWVFGGGDHGDPDLAQAISHLKETSTFSILLVVFGHMHKELADGNGLRKMIVVGTDNIIYLNGAIVPRVKRPINKQQAAHRSSIDNQTLLNASNSDGTKRAFTLIEILNGQVDKISENWVSVVGNETTLEEEHILF 342
Match: A0A1U7YA14 ((uncharacterized protein LOC104242343 isoform X1 {ECO:0000313|RefSeq:XP_009795680.1}))
HSP 1 Score: 452.595 bits (1163), Expect = 1.138e-157
Identity = 226/348 (64.94%), Postives = 267/348 (76.72%), Query Frame = 0
Query: 1 MLSGA-LLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSVIGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFS 347
M +G+ LHAP P C + P L P+ KL FSM++SVRIAVVGDVHD WNLEED KAL+LL+PDLVLFTGD+GNE NV LV SIADL + KA ILGNHDAWNT FS R+KD VQLQL+CLG EHVGY+R+D P LKLS+VGGRPFS GG+ LFR +LL RYGV M+ SA+RI +AA+GTPEDHSIIFLAHNGPTGLG++++DICGRDW GGDHGDPDLA AL+QLKE SVPLV+FGHMHK+LA GNG RKM+VVG+DN+IYLNGA+VPRV+ + ++ GT RA T+ EI GR+EKI ETW+SV+GDK L EEHILF+
Sbjct: 1 MFTGSTWLHAPTPFC--GISGPILHPTPS----KLAGGDFSMSSSVRIAVVGDVHDDWNLEEDRKALQLLQPDLVLFTGDFGNE-NVDLVRSIADLEMTKAVILGNHDAWNTQNFSGREKDAVQLQLECLGDEHVGYRRMDLPMLKLSVVGGRPFSCGGRPLFRKQLLKARYGVHDMDRSAERILQAAMGTPEDHSIIFLAHNGPTGLGAKIDDICGRDWFVGGGDHGDPDLAHALAQLKEAAPYSVPLVIFGHMHKQLALGNGFRKMIVVGNDNTIYLNGAIVPRVRPPALTAESE----------GTSRAFTIAEISNGRVEKIAETWISVIGDKTRLEEEHILFN 331
Match: A0A1S4BFG0 ((uncharacterized protein LOC107807700 isoform X1 {ECO:0000313|RefSeq:XP_016487622.1}))
HSP 1 Score: 452.595 bits (1163), Expect = 1.138e-157
Identity = 226/348 (64.94%), Postives = 267/348 (76.72%), Query Frame = 0
Query: 1 MLSGA-LLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSVIGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFS 347
M +G+ LHAP P C + P L P+ KL FSM++SVRIAVVGDVHD WNLEED KAL+LL+PDLVLFTGD+GNE NV LV SIADL + KA ILGNHDAWNT FS R+KD VQLQL+CLG EHVGY+R+D P LKLS+VGGRPFS GG+ LFR +LL RYGV M+ SA+RI +AA+GTPEDHSIIFLAHNGPTGLG++++DICGRDW GGDHGDPDLA AL+QLKE SVPLV+FGHMHK+LA GNG RKM+VVG+DN+IYLNGA+VPRV+ + ++ GT RA T+ EI GR+EKI ETW+SV+GDK L EEHILF+
Sbjct: 1 MFTGSTWLHAPTPFC--GISGPILHPTPS----KLAGGDFSMSSSVRIAVVGDVHDDWNLEEDRKALQLLQPDLVLFTGDFGNE-NVDLVRSIADLEMTKAVILGNHDAWNTQNFSGREKDAVQLQLECLGDEHVGYRRMDLPMLKLSVVGGRPFSCGGRPLFRKQLLKARYGVHDMDRSAERILQAAMGTPEDHSIIFLAHNGPTGLGAKIDDICGRDWFVGGGDHGDPDLAHALAQLKEAAPYSVPLVIFGHMHKQLALGNGFRKMIVVGNDNTIYLNGAIVPRVRPPALTAESE----------GTSRAFTIAEISNGRVEKIAETWISVIGDKTRLEEEHILFN 331
Match: A0A6J5VLP5 (Metallophos domain-containing protein {ECO:0000259|Pfam:PF00149})
HSP 1 Score: 452.595 bits (1163), Expect = 1.249e-157
Identity = 229/350 (65.43%), Postives = 272/350 (77.71%), Query Frame = 0
Query: 1 MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSV---IGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFS 347
MLS L+HAP S S SL P K + S +S RIA+VGDVHD WNLEED KALELL+PDLVLFTGD+G EE+V+LV+S+A+L AKA ILGNHDAW+T +FS +KKD VQLQL+CLG EHV Y+RLDFP +KLS+VGGRPFS GGQ+LFRPKLLS RYGV+ M+ SAKRI KAALG PEDH +I LAHNGPTGLGS ++D+CG+DW + GGDHGDPDLA ALS LKET K+ PLVVFGHMHK+LADGNGLRKM+VVG DN+IYLNGA+VPRVKKL +D + P S GT RA T+VEI+ G ++KIVE+WVSV+GD+ L EEH+LF+
Sbjct: 1 MLS-TLVHAPTVCSPSGS---SLNPLSKHIATRASMATASARSSARIAIVGDVHDQWNLEEDTKALELLQPDLVLFTGDFG-EESVELVQSVAELRFAKAVILGNHDAWHTKQFSGKKKDGVQLQLECLGEEHVAYRRLDFPVVKLSVVGGRPFSCGGQQLFRPKLLSARYGVQDMDGSAKRICKAALGAPEDHLVILLAHNGPTGLGSNLDDVCGKDWVYGGGDHGDPDLAQALSLLKETGKICGPLVVFGHMHKQLADGNGLRKMIVVGADNTIYLNGAIVPRVKKL---NDEFVDKEPDLSTPESCGTIRAFTIVEIVDGAVDKIVESWVSVVGDRITLEEEHMLFN 342
Match: A0A6J5XZ56 (Metallophos domain-containing protein {ECO:0000259|Pfam:PF00149})
HSP 1 Score: 452.21 bits (1162), Expect = 2.065e-157
Identity = 229/350 (65.43%), Postives = 272/350 (77.71%), Query Frame = 0
Query: 1 MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSV---IGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFS 347
MLS L+HAP S S SL P K + S +S RIA+VGDVHD WNLEED KALELL+PDLVLFTGD+G EE+V+LV+S+A+L AKA ILGNHDAW+T +FS +KKD VQLQL+CLG EHV Y+RLDFP +KLS+VGGRPFS GGQ+LFRPKLLS RYGV+ M+ SAKRI KAALG PEDH ++ LAHNGPTGLGS ++DICG+DW + GGDHGDPDLA ALS LKET K+ PLVVFGHMHK+LADGNGLRKM+VVG DN+IYLNGA+VPRVKKL +D + P S GT RA T+VEI+ G ++KIVE+WVSV+GD+ L EEH+LF+
Sbjct: 1 MLS-TLVHAPTVCSPSGS---SLNPLSKHIATRASMATASARSSARIAIVGDVHDQWNLEEDTKALELLQPDLVLFTGDFG-EESVELVQSVAELRFAKAVILGNHDAWHTKQFSGKKKDGVQLQLECLGEEHVAYRRLDFPVVKLSVVGGRPFSCGGQQLFRPKLLSARYGVQDMDGSAKRICKAALGAPEDHLVLLLAHNGPTGLGSNLDDICGKDWVYGGGDHGDPDLAQALSLLKETGKICGPLVVFGHMHKQLADGNGLRKMIVVGADNTIYLNGAIVPRVKKL---NDEFVDKEPDLSTPESCGTIRAFTIVEIVDGAVDKIVESWVSVVGDRITLEEEHMLFN 342
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5AYI9 | E-Value: 2.032e-169, PID: 68.07 | Metallophos domain-containing protein {ECO:0000259... [more] |
| A0A5B7BPR7 | E-Value: 3.562e-169, PID: 67.79 | Metallophos domain-containing protein {ECO:0000259... [more] |
| A0A836Y7K1 | E-Value: 1.531e-162, PID: 65.90 | (Calcineurin metallo-phosphoesterase superfamily p... [more] |
| A0A2K2A4G7 | E-Value: 2.244e-161, PID: 65.06 | Metallophos domain-containing protein {ECO:0000259... [more] |
| A0A1U8AIG7 | E-Value: 1.041e-159, PID: 70.51 | (uncharacterized protein LOC104603343 isoform X1 {... [more] |
| A0A6J0ZN03 | E-Value: 2.037e-158, PID: 64.51 | (uncharacterized protein LOC110410707 isoform X1 {... [more] |
| A0A1U7YA14 | E-Value: 1.138e-157, PID: 64.94 | (uncharacterized protein LOC104242343 isoform X1 {... [more] |
| A0A1S4BFG0 | E-Value: 1.138e-157, PID: 64.94 | (uncharacterized protein LOC107807700 isoform X1 {... [more] |
| A0A6J5VLP5 | E-Value: 1.249e-157, PID: 65.43 | Metallophos domain-containing protein {ECO:0000259... [more] |
| A0A6J5XZ56 | E-Value: 2.065e-157, PID: 65.43 | Metallophos domain-containing protein {ECO:0000259... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |