Resource Type:
Polypeptide
Name:
DCAR_016898
Identifier:
DCAR_016898.mRNA-protein
Sequence:
MARDKYRQVSLLVFGLIAGLISQNLVIPVMSAATLEDQKTYYSPDPHGGN
SHHGGSHHTPSHGSGGGHGSSPHHHKTPSHGSSTPSNCGTGTPSSGGHHH
STPTHVHNPPTATPSTPSTPTHESPPIIDPGTPTPTYGSPPTNESPPTID
PVTPSTPTYGSPPTTESPPSIAPETPSTPSTGSPPTIDPVTPSTPTYGSP
PTIDPVTPSTPTYGSPPTTESPPSIAPETPSTPTTGSPPSIDPVTPSTPT
SSSPPIIESPPSTVPETPSTPTSGSPPTIDPITPSTPTYGSPTTPSIDPV
TPSTPTYGSPPSVDPVSPSTPTYGSPTTPSVDPVTPSTPTYESPTTPSID
PVTPSTPTYGSPPSVDPVSPSTPTYGSPTTPSVDPVTPSTPTYGSPTTPS
IDPVSPTTPTFGSSPTTPYIDPGTGIDPNSSPFPCIYWSTHPTLIWGLFG
FYGTTLAGAFGLPGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLN
SMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLKLKN*
Sequence Length:
548
Sequence Checksum:
3b4638df1342b7df99657ef64ca1810f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_016898, derives from mRNA, DCAR_016898. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0JHS5 ((protodermal factor 1-like {ECO:0000313|RefSeq:XP_018435192.1}))
HSP 1 Score: 178.333 bits (451), Expect = 8.884e-48
Identity = 141/284 (49.65%), Postives = 168/284 (59.15%), Query Frame = 0
HSP 2 Score: 55.8398 bits (133), Expect = 1.196e-5
Identity = 124/318 (38.99%), Postives = 154/318 (48.43%), Query Frame = 0
Match: A0A6J0JHS5 ((protodermal factor 1-like {ECO:0000313|RefSeq:XP_018435192.1}))
HSP 1 Score: 178.333 bits (451), Expect = 8.884e-48
Identity = 141/284 (49.65%), Postives = 168/284 (59.15%), Query Frame = 0
Query: 294 TPSIDPVTPSTPTYGSPPSVDPVSPSTPT-------YGSP--TTPSVDPVTPSTPTYESPTTPSIDPVTPSTPTYGSPPSVDPVS----PSTPTYGSPTTPSVDP------VTPSTPTYGS-----PTTPSIDPVSPTTPTFGSSPTTPYIDPGT-GIDPNSSPFP-----CIYWSTHPTLIWGLFGFYGTTLAGAFGL---PGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLNSMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLK 544
TP P TPS P+ S PS P PSTP+ Y SP +TP V+ PSTP E+P TP +DP TPST G+PPS PSTP +P TP VDP TP TP+ G P TP IDP TP G +P TP+IDPGT G +PFP C YW HPTLIWGL G++GT + GAFG P GF P +NL+QALSNTR D G+LYREG AS LNSM +FPFTT QVR+ F++ L S AA +QA+ F++ANEG+LK
Sbjct: 134 TPPSHPSTPSRPSRPSHPST-PSRPSTPSNPPSGGYYSSPPPSTPVVE-TPPSTPVVETPPTPIVDPGTPST--GGTPPSSGGYYSSPPPSTPVVETPPTPIVDPGTPIIGETPPTPSSGGYYSSPPPTPIIDP---GTPIIGGTPPTPFIDPGTPGTPFLPAPFPPISGTCDYWRNHPTLIWGLLGWWGT-VGGAFGTLSTPSIIPGFDPHMNLLQALSNTRTDAIGSLYREGTASWLNSMVNSQFPFTTPQVRDHFLAGLSSTKAATKQAQTFKLANEGRLK 409
HSP 2 Score: 55.8398 bits (133), Expect = 1.196e-5
Identity = 124/318 (38.99%), Postives = 154/318 (48.43%), Query Frame = 0
Query: 8 QVSLLVFGLIAGLISQNLVIPVMSAATLEDQKTYYSP-DPHGGNSHHGGSHHTPSHGSGGGHGSSPHHHKTPSHGSSTPSNCGT---GTPSSGGHHHSTPTHVHNPPTATPSTPSTPTHESPPIIDPGTPTPTYGSPPTNESPPTIDPVTPSTPTYGSPPTTESPPSIAPETPSTPSTGSPPTIDPVT---PSTPTYGSPPT--IDPVTPSTPTYGSPPTT----ESPPSIAPETPSTPTTGSPPS--IDPVTPSTPTSSSPPIIESPPSTVPETPSTPTSG----SPPTIDPITPSTPTY-GSPTTPSIDPVTPSTP 305
+SL + L A L+SQ L+ V S +D+KTYYSP DP+ G+ G PSHG G+ +P TPSH + PSNCG+ + P+ TPSTP+H P TP P++ SPP N P P TPS P+ S P+T S PS PS SPP PV PSTP +PPT +DP TPS T G+PP++ SPP PSTP +PP+ +DP TP + ETP TP+SG SPP I P TP G+P TP IDP TP TP
Sbjct: 4 MMSLTICALFAALLSQQLLASVASIK-FQDEKTYYSPPDPNAGSPPSG---TPPSHG---GYTPTP---STPSH--TPPSNCGSPPYDPTPPSHTPTPSTPSHTPTPSTPSHTPSTPSHTPTPSTPSHTPIPSHTSPPCNCGTPPSHPSTPSRPSRPSHPSTPSRPSTPSNPPSGGYYSSPPPSTPVVETPPSTPVVETPPTPIVDPGTPS--TGGTPPSSGGYYSSPP------PSTPVVETPPTPIVDPGTP----------------IIGETPPTPSSGGYYSSPPPTPIIDPGTPIIGGTPPTPFIDPGTPGTP 285
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5XHX0 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ18660.1}) (Fragment))
HSP 1 Score: 172.17 bits (435), Expect = 3.490e-47
Identity = 120/238 (50.42%), Postives = 143/238 (60.08%), Query Frame = 0
HSP 2 Score: 41.5874 bits (96), Expect = 2.201e-1
Identity = 74/192 (38.54%), Postives = 82/192 (42.71%), Query Frame = 0
Match: M5XHX0 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ18660.1}) (Fragment))
HSP 1 Score: 172.17 bits (435), Expect = 3.490e-47
Identity = 120/238 (50.42%), Postives = 143/238 (60.08%), Query Frame = 0
Query: 328 TPSVDPVTPSTPTYESPTTPSIDPVTPSTPT-----------YGSPPSVDPVSP-STPTYGSPTTPSVDPVTPSTPTYGSPTTPSIDPVSPTTPTFGSSPTTPYI----DPGTGIDPNSSPFPCIYWSTHPTLIWGLFGFYGTTLAGAFG---LPGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLNSMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLKLK 546
TPS P TP Y +PT PS DP TPS P+ Y SPP+ SP TP +P TP + +TP TP +P TP I VSP P G+ PT P P DPNS PF CIYW HPT+IWGL G++GT L AFG LPG G+ ++L QALSNT DG G LYR+G A+LLNSM RF FTT QVR+SF+ +LGSN AAA QAR F++ANEG+LK +
Sbjct: 26 TPSSPPSNCGTPPYHNPT-PSHDPGTPSRPSTPSTPPSGGGYYNSPPTSGGYSPPQTPDILTPPTPDI--LTPPTPDVLTPPTPDI--VSPPMPYIGTPPTDPNTPSIPTPPFLPDPNSPPFTCIYWRNHPTVIWGLLGWWGT-LGHAFGVTSLPGFGSS---TMSLQQALSNTHTDGLGELYRQGTAALLNSMVDNRFHFTTKQVRDSFVGALGSNKAAASQARVFKLANEGKLKSR 254
HSP 2 Score: 41.5874 bits (96), Expect = 2.201e-1
Identity = 74/192 (38.54%), Postives = 82/192 (42.71%), Query Frame = 0
Query: 53 HGGSHHTPSHGSGGGHGSSPHHHKTPSHGSSTPSNCGTGTPSSGGHHHSTPTHVHNPPTATPSTPSTPTHESPPIIDPGTPTPTYGSPPTNESPPTIDPVTPSTP-----TYGSPPTTESPPSIAPETPSTPSTGSPPTIDPVTPSTPTYGSPPTIDPVTPSTPTYGSPPTTESPPSIAPETPSTPTTGSPP 239
HG SH PSH S HH TPS S PSNCGT PP P TP+H DPGTP+ P TPSTP Y SPPT S P TP +PPT D +TP TP +PPT D V+P P G+PPT + PSI P P P SPP
Sbjct: 11 HGDSHRPPSHRS---------HHPTPS---SPPSNCGT------------------PPYHNP----TPSH------DPGTPS---------------RPSTPSTPPSGGGYYNSPPT-----SGGYSPPQTPDILTPPTPDILTPPTPDVLTPPTPDIVSPPMPYIGTPPTDPNTPSI-PTPPFLPDPNSPP 141
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A2YKB6 ((Protodermal factor 1 {ECO:0000313|EMBL:KAE8678467.1}))
HSP 1 Score: 179.489 bits (454), Expect = 3.649e-47
Identity = 167/353 (47.31%), Postives = 200/353 (56.66%), Query Frame = 0
HSP 2 Score: 99.7525 bits (247), Expect = 1.269e-19
Identity = 137/314 (43.63%), Postives = 163/314 (51.91%), Query Frame = 0
Match: A0A6A2YKB6 ((Protodermal factor 1 {ECO:0000313|EMBL:KAE8678467.1}))
HSP 1 Score: 179.489 bits (454), Expect = 3.649e-47
Identity = 167/353 (47.31%), Postives = 200/353 (56.66%), Query Frame = 0
Query: 227 PETPSTPTTGSPPSIDPVTPSTPTSSSPPIIESPPSTVPETPSTPTSGSPPTIDPITPSTPTYGSPTTPSIDPVTPSTP-TYG--SPPS------------------VDPVSPSTP-TYGSPTTPSVDPVTPSTPTYESPTTPSIDPVTPST-PTY--GSPPSVDPVSPSTPTYGSPTTPSVDPVTPST-PTYGSPTTPSIDPVSPTTPTFGSSPTTPYIDPGT-GIDPNSSPFP--------CIYWSTHPTLIWGLFGFYGTTLAGAFGLPGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLNSMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLK 544
P TPS G+PP +P TPSTP P TP+ GSPP+ +P TP SP TP IDP TPSTP +YG SPP+ +DP +PSTP +YG + P+ +P TP SP TP IDP TPST P+Y GSPP+ SP TP SP TP +DP TPST P+YG + P+ G SP TP IDPGT I C +W +HPTLIWGL G++G TL AFG+ GFG ++L QALSNTR+DG GALYREG AS LNSM RFPF+T QVR SF+S+LGSN AAA QA F++ANEG +K
Sbjct: 203 PSTPSGGNCGTPPH-EPSTPSTP------------------PRTPSHGSPPSYGGGSPPTPVTVSPPTPIIDPGTPSTPPSYGGGSPPTYGGGSPPTPVTVSPPTPIIDPGTPSTPPSYGGGSPPTYGGGSPPTPVTVSPPTPIIDPGTPSTPPSYGGGSPPTYGGGSPPTPVIVSPPTPIIDPGTPSTPPSYGGGSPPTYG---------GGSPPTPIIDPGTPSIPTPPFFPAPTPPIGGTCDFWRSHPTLIWGLLGWWG-TLGSAFGMT-SAPGFGATMSLPQALSNTRSDGLGALYREGTASFLNSMVNHRFPFSTEQVRQSFVSALGSNSAAAAQAHLFKLANEGHIK 525
HSP 2 Score: 99.7525 bits (247), Expect = 1.269e-19
Identity = 137/314 (43.63%), Postives = 163/314 (51.91%), Query Frame = 0
Query: 1 MARDKYRQVSLLVFGLIAGLISQNLVIPVMSAATLEDQKTYY-SPDPHGGNSHHGGSHHT-PSHGSGGGHGSSPHHHKTPSHGSSTPSNCGTGTPSSGGHHH--STPT-----HVHNPPT--ATPST-PSTPTHESPP------------------IIDPGTPT--PTY--GSPPT------------NESPPTIDPVTPST-PTY--GSPPT------------TESPPSIAPETPSTP---STGSPPTIDPVTPSTPTYGSPPT--IDPVTPST-PTYGSPPTTESPPSIAPETPSTPTTGSPPSIDPVTPS 247
MAR++ +Q+ L+ + L+AGL+ QNLV+PV S+ L +QK YY SPDPH G GSH T PSHGSGGG +P H TPSHG GG+HH STP+ + PP +TPST P TP+H SPP IIDPGTP+ P+Y GSPPT + P IDP TPST P+Y GSPPT + P I P TPSTP GSPPT +P TP SPPT IDP TPST P+YG SPP+ +P TP IDP TPS
Sbjct: 117 MARERNKQLCLM-WVLVAGLLCQNLVVPV-SSIDLGEQKNYYPSPDPHAGTPPS-GSHGTPPSHGSGGG---TPPSHGTPSHG--------------GGYHHTPSTPSTPSGGNCGTPPHEPSTPSTPPRTPSHGSPPSYGGGSPPTPVTVSPPTPIIDPGTPSTPPSYGGGSPPTYGGGSPPTPVTVSPPTPIIDPGTPSTPPSYGGGSPPTYGGGSPPTPVTVSPPTPIIDPGTPSTPPSYGGGSPPTYGGGSPPTPVIVSPPTPIIDPGTPSTPPSYGG----GSPPTYGGGSPPTPI------IDPGTPS 400
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251Q1G1 ((Uncharacterized protein {ECO:0000313|EMBL:ONI17643.1}))
HSP 1 Score: 170.629 bits (431), Expect = 4.977e-46
Identity = 120/238 (50.42%), Postives = 143/238 (60.08%), Query Frame = 0
HSP 2 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 106/256 (41.41%), Postives = 122/256 (47.66%), Query Frame = 0
Match: A0A251Q1G1 ((Uncharacterized protein {ECO:0000313|EMBL:ONI17643.1}))
HSP 1 Score: 170.629 bits (431), Expect = 4.977e-46
Identity = 120/238 (50.42%), Postives = 143/238 (60.08%), Query Frame = 0
Query: 328 TPSVDPVTPSTPTYESPTTPSIDPVTPSTPT-----------YGSPPSVDPVSP-STPTYGSPTTPSVDPVTPSTPTYGSPTTPSIDPVSPTTPTFGSSPTTPYI----DPGTGIDPNSSPFPCIYWSTHPTLIWGLFGFYGTTLAGAFG---LPGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLNSMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLKLK 546
TPS P TP Y +PT PS DP TPS P+ Y SPP+ SP TP +P TP + +TP TP +P TP I VSP P G+ PT P P DPNS PF CIYW HPT+IWGL G++GT L AFG LPG G+ ++L QALSNT DG G LYR+G A+LLNSM RF FTT QVR+SF+ +LGSN AAA QAR F++ANEG+LK +
Sbjct: 79 TPSSPPSNCGTPPYHNPT-PSHDPGTPSRPSTPSTPPSGGGYYNSPPTSGGYSPPQTPDILTPPTPDI--LTPPTPDVLTPPTPDI--VSPPMPYIGTPPTDPNTPSIPTPPFLPDPNSPPFTCIYWRNHPTVIWGLLGWWGT-LGHAFGVTSLPGFGSS---TMSLQQALSNTHTDGLGELYRQGTAALLNSMVDNRFHFTTKQVRDSFVGALGSNKAAASQARVFKLANEGKLKSR 307
HSP 2 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 106/256 (41.41%), Postives = 122/256 (47.66%), Query Frame = 0
Query: 1 MARDKYRQVSLLVFGLIAGLISQNLVIPVMSAATLEDQKTYYSPDPHGGNS------------HHGGSHHTPSHGSGGGHGSSPHHHKTPSHGSSTPSNCGTGTPSSGGHHHSTPTHVHNPPTATPSTPSTPTHESPPIIDPGTPTPTYGSPPTNESPPTIDPVTPSTP-----TYGSPPTTESPPSIAPETPSTPSTGSPPTIDPVTPSTPTYGSPPTIDPVTPSTPTYGSPPTTESPPSIAPETPSTPTTGSPP 239
M R + R SL ++ L+AG+ISQNLVIPVMS+ T+E QKTYYSPDPH G+ HG SH PSH S HH TPS S PSNCGT PP P TP+H DPGTP+ P TPSTP Y SPPT S P TP +PPT D +TP TP +PPT D V+P P G+PPT + PSI P P P SPP
Sbjct: 1 MGRVRSRVASLFIWTLVAGMISQNLVIPVMSS-TVEGQKTYYSPDPHAGSPPGGPHSTPSNPPSHGDSHRPPSHRS---------HHPTPS---SPPSNCGT------------------PPYHNP----TPSH------DPGTPS---------------RPSTPSTPPSGGGYYNSPPT-----SGGYSPPQTPDILTPPTPDILTPPTPDVLTPPTPDIVSPPMPYIGTPPTDPNTPSI-PTPPFLPDPNSPP 194
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4FKM3 ((Full=PREDICTED: protodermal factor 1 {ECO:0000313|EMBL:VVA28597.1}))
HSP 1 Score: 169.859 bits (429), Expect = 1.026e-45
Identity = 120/238 (50.42%), Postives = 143/238 (60.08%), Query Frame = 0
HSP 2 Score: 90.1225 bits (222), Expect = 3.048e-17
Identity = 106/250 (42.40%), Postives = 122/250 (48.80%), Query Frame = 0
Match: A0A5E4FKM3 ((Full=PREDICTED: protodermal factor 1 {ECO:0000313|EMBL:VVA28597.1}))
HSP 1 Score: 169.859 bits (429), Expect = 1.026e-45
Identity = 120/238 (50.42%), Postives = 143/238 (60.08%), Query Frame = 0
Query: 328 TPSVDPVTPSTPTYESPTTPSIDPVTPSTPT-----------YGSPPSVDPVSP-STPTYGSPTTPSVDPVTPSTPTYGSPTTPSIDPVSPTTPTFGSSPTTPYI----DPGTGIDPNSSPFPCIYWSTHPTLIWGLFGFYGTTLAGAFG---LPGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLNSMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLKLK 546
TPS P TP Y +PT PS DP TPS P+ Y SPP+ SP TP +P TP + +TP TP +P TP I VSP P G+ PT P P DPNS PF CIYW HPT+IWGL G++GT L AFG LPG G+ ++L QALSNT DG G LYR+G A+LLNSM RF FTT QVR+SF+ +LGSN AAA QAR F++ANEG+LK +
Sbjct: 79 TPSSPPSNCGTPPYHNPT-PSHDPGTPSRPSTPSTPPSGGGYYNSPPTSGGYSPPQTPDILTPPTPDI--LTPPTPDVLTPPTPDI--VSPPIPYIGTPPTDPNTPSIPTPPFLPDPNSPPFTCIYWRNHPTVIWGLLGWWGT-LGHAFGVTSLPGFGSS---TMSLQQALSNTHTDGLGELYRQGTAALLNSMVDNRFHFTTKQVRDSFVGALGSNKAAASQARVFKLANEGKLKSR 307
HSP 2 Score: 90.1225 bits (222), Expect = 3.048e-17
Identity = 106/250 (42.40%), Postives = 122/250 (48.80%), Query Frame = 0
Query: 1 MARDKYRQVSLLVFGLIAGLISQNLVIPVMSAATLEDQKTYYSPDPHGGNSHHGGSHHTPSHGSGGGHGSSPHHHKTPSHGS------STPSNCGTGTPSSGGHHHSTPTHVHNPPTATPSTPSTPTHESPPIIDPGTPTPTYGSPPTNESPPTIDPVTPSTP-----TYGSPPTTESPPSIAPETPSTPSTGSPPTIDPVTPSTPTYGSPPTIDPVTPSTPTYGSPPTTESPPSIAPETPSTPTTGSPP 239
M R R SL ++ L+AG+ISQNLVI VMS+ T+E QKTYYSPDPH G GG H TPS+ HG S H+ PSH S S PSNCGT PP P TP+H DPGTP+ P TPSTP Y SPPT S P TP +PPT D +TP TP +PPT D V+P P G+PPT + PSI P P P SPP
Sbjct: 1 MGRVTSRVASLFIWTLVAGMISQNLVILVMSS-TVEGQKTYYSPDPHAGRPP-GGPHSTPSNPPS--HGDS---HRPPSHRSNHPTPSSPPSNCGT------------------PPYHNP----TPSH------DPGTPS---------------RPSTPSTPPSGGGYYNSPPT-----SGGYSPPQTPDILTPPTPDILTPPTPDVLTPPTPDIVSPPIPYIGTPPTDPNTPSI-PTPPFLPDPNSPP 194
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6L0Y4 ((Uncharacterized protein {ECO:0000313|EMBL:KAB8518530.1}))
HSP 1 Score: 169.859 bits (429), Expect = 1.479e-45
Identity = 129/249 (51.81%), Postives = 162/249 (65.06%), Query Frame = 0
HSP 2 Score: 57.3806 bits (137), Expect = 2.573e-6
Identity = 96/233 (41.20%), Postives = 117/233 (50.21%), Query Frame = 0
Match: A0A5N6L0Y4 ((Uncharacterized protein {ECO:0000313|EMBL:KAB8518530.1}))
HSP 1 Score: 169.859 bits (429), Expect = 1.479e-45
Identity = 129/249 (51.81%), Postives = 162/249 (65.06%), Query Frame = 0
Query: 304 TPTYGSPPSVDPVSPSTPTYG-SPTTPSVDPVTPSTPTYE-SPTTPSIDPV--TPSTPTYGSPPSVDPVSPSTP--TYGSPTTPSVDPVTPSTPTY--GSPTTPSIDPVSPTTPTFGSSPTTPYIDPGTGIDPNSSPFPCIYWSTHPTLIWGLFGFYGTTLAGAFGLPGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLNSMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLK 544
TP++G S +P +PSTP+Y +P+TPS DP TPSTP+Y +P+TPS DP TPS G+PP+ +PSTP Y SP PTY GSP TP +SP T SP+ P++ DPN P C YW +HP +IWGL G++GT L AFG+ GFG ++L QALSNTR DG GALYREG ASLLNSM +RFPFTT QVR+SF+SS+GSN AAA QA+ F++ANEG++K
Sbjct: 95 TPSHGGSGSYNP-TPSTPSYNPTPSTPSYDP-TPSTPSYNPTPSTPSYDPTPSTPSDGNCGTPPAHHDPTPSTPGSYYNSP------------PTYSDGSPPTPVT--LSPPTTYTPPSPSPPFV-----TDPNV-PGTCNYWRSHPAVIWGLLGWWGT-LGNAFGVTSV-PGFGASVSLPQALSNTRTDGLGALYREGTASLLNSMVNQRFPFTTKQVRDSFVSSIGSNRAAAAQAQLFKLANEGRIK 319
HSP 2 Score: 57.3806 bits (137), Expect = 2.573e-6
Identity = 96/233 (41.20%), Postives = 117/233 (50.21%), Query Frame = 0
Query: 1 MARDKYRQVSLLVFGLIAGLISQNLVIPVMSAATLEDQKTYYSPDP----------------HGGN--SHHGGSHH-TPSHGSGGGHGSSPHHHKTPSHGSSTPSNCGTGTPSSGGHHHSTPTHVHNPPTATPSTPSTPTHESPPIIDPGTPTPTYGSPPTNESPPTIDPVTPSTPTYGSPPTTESPPSIAPETPSTPST--GSPPTIDPVTPSTPTYGSPPTIDPVTPSTPT 212
MAR + SL + +++ L+SQN++I VMS A +EDQK YYSPDP +GG SH GGS+ TPS S G G+ P HH TPSHG G+G+ +NP TPSTPS S P DP TP+Y P S P+ DP TPSTP+ G+ T PP+ TPSTP + SPPT GSPPT PVT S PT
Sbjct: 1 MARVTSKLASLYICTVVSALLSQNMMIHVMSTA-VEDQKNYYSPDPHPPGGGHHGHTPSHHGNGGTPPSHGGGSYDPTPSPPSDGYGGTPPSHHGTPSHG-------GSGS--------------YNP---TPSTPSYNPTPSTPSYDPTPSTPSYNPTP---STPSYDP-TPSTPSDGNCGT---PPAHHDPTPSTPGSYYNSPPTYSD--------GSPPT--PVTLSPPT 191
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5UID4 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4273898.1}))
HSP 1 Score: 168.703 bits (426), Expect = 2.372e-45
Identity = 119/234 (50.85%), Postives = 141/234 (60.26%), Query Frame = 0
HSP 2 Score: 101.679 bits (252), Expect = 3.412e-21
Identity = 101/233 (43.35%), Postives = 117/233 (50.21%), Query Frame = 0
Match: A0A6J5UID4 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4273898.1}))
HSP 1 Score: 168.703 bits (426), Expect = 2.372e-45
Identity = 119/234 (50.85%), Postives = 141/234 (60.26%), Query Frame = 0
Query: 328 TPSVDPVTPSTPTYESPTTPSIDPVTPSTPT-----------YGSPPSVDPVSPS-TPTYGSPTTPSVDPVTPSTPTYGSPTTPSID--PVSPTTPTFGSSPTTPYIDPGTGIDPNSSPFPCIYWSTHPTLIWGLFGFYGTTLAGAFG---LPGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLNSMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLK 544
TPS P TP Y +PT PS DP TPS P+ Y SPP+ SP TP +P TP V +TP TP SP P I P P TP+ PT P++ DPNS PF CIYW HPT+IWGL G++GT L AFG LPG G+ ++L QALSNT DG G LYR+G A+LLNSM RF FTT QVR+SF+ +LGSN AAA QAR F++ANEG+LK
Sbjct: 80 TPSSPPSNCGTPPYHNPT-PSHDPGTPSEPSTPSTPPSGGGYYNSPPTSGGYSPPPTPDVLTPPTPDV--LTPPTPDIVSPPIPYIGTPPTDPNTPSI---PTPPFLP-----DPNSPPFTCIYWRNHPTVIWGLLGWWGT-LGHAFGVNSLPGFGSS---TMSLQQALSNTHTDGLGELYRQGTAALLNSMVDNRFHFTTKQVRDSFVGALGSNKAAASQARVFKLANEGKLK 298
HSP 2 Score: 101.679 bits (252), Expect = 3.412e-21
Identity = 101/233 (43.35%), Postives = 117/233 (50.21%), Query Frame = 0
Query: 1 MARDKYRQVSLLVFGLIAGLISQNLVIPVMSAATLEDQKTYYSPDPHGGN-------------SHHGGSHHTPSHGSGGGHGSSPHHHKTPSHGSSTPSNCGTGTPSSGGHHHSTPTHVHNPPTATPSTPSTPTHESPPIIDPGTPTPTYGSPPTNESPPTIDPVTPSTP-----TYGSPPTTES---PPSIAPETPSTPSTGSPPTIDPVTPSTPTYGSPPTIDPVTPSTPT 212
M R + R SL ++ L+AG+ISQNLVIPVMS +T+E QKTYYSPDPH G+ SH GGSH PSHGS HH TP SS PSNCGT PP P TP+H DPGTP+ +P TPSTP Y SPPT+ PP+ TP TP +PPT D V+P P G+PPT DP TPS PT
Sbjct: 1 MGRVRSRVASLFIWTLVAGMISQNLVIPVMS-STVEGQKTYYSPDPHSGSPPGGSHSTPSDPPSHGGGSHRPPSHGS---------HHPTP---SSPPSNCGT------------------PPYHNP----TPSH------DPGTPS---------------EPSTPSTPPSGGGYYNSPPTSGGYSPPPTPDVLTPPTPDVLTPPTPDIVSPPIPYIGTPPT-DPNTPSIPT 176
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R9ZKB1 ((Nucleus degradation inhibitor 1 {ECO:0000313|EMBL:AJA72318.1}))
HSP 1 Score: 170.629 bits (431), Expect = 3.734e-45
Identity = 107/218 (49.08%), Postives = 136/218 (62.39%), Query Frame = 0
HSP 2 Score: 41.2022 bits (95), Expect = 4.974e-1
Identity = 99/291 (34.02%), Postives = 120/291 (41.24%), Query Frame = 0
Match: A0A2R9ZKB1 ((Nucleus degradation inhibitor 1 {ECO:0000313|EMBL:AJA72318.1}))
HSP 1 Score: 170.629 bits (431), Expect = 3.734e-45
Identity = 107/218 (49.08%), Postives = 136/218 (62.39%), Query Frame = 0
Query: 336 PSTPTYESPTTPSIDPVTPSTPTYGSPPSVDPVSPSTPTYGSPTTPSVDPVTPSTPTYGSPTTPSIDPVSPTTPTFGSSPTTPYIDPGT-GIDPNSSPFP-----CIYWSTHPTLIWGLFGFYGTTLAGAFG---LPGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLNSMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLK 544
PSTP E+P TP +DP TP + +P TP+ G ++P PSTP +P TP +DP TP G +P TP+IDPGT G +PFP C YW HPTLIWGL G++GT + GAFG +P GF P +NL+QALSNTR D G+LYREG AS LNSM +FPFTT+QVR+ F++ L S AA +QA+ F++ANEG+LK
Sbjct: 191 PSTPVVETPPTPIVDPGTP----------IIGETPPTPSGGYYSSPP-----PSTPIVVTPPTPIVDP---GTPIIGGTPPTPFIDPGTPGTPFLPAPFPPITGTCDYWRNHPTLIWGLLGWWGT-VGGAFGAVSIPSSIPGFDPHMNLLQALSNTRTDAIGSLYREGTASWLNSMVNNQFPFTTSQVRDQFLAGLSSTKAATKQAQTFKLANEGRLK 389
HSP 2 Score: 41.2022 bits (95), Expect = 4.974e-1
Identity = 99/291 (34.02%), Postives = 120/291 (41.24%), Query Frame = 0
Query: 10 SLLVFGLIAGLISQNLVIPVMSAATLEDQKTYYS-PDPHGGNSHHGGSHHTPSHGSGGGHGSSPHHHKTPSHGS-----------------------------STPSNCGTGTPSSGGHHHSTPTHVHNPPT-ATPSTPSTPTH-------------------ESPPIIDPGTPTPTYGSPPTNESPPTIDPVTPSTPTYGSP----PTTESPPS--------IAPETPSTPSTG---SPPTIDPVTPSTPTYGSPPT--IDPVTPSTPTYGSPPTTESPPSIAPETPSTP 233
SL ++ + A ++SQ L V S ED+KTYYS PDP+ G+ G PSHG +P H + GS T C GTP S H STP+H P + PS PSTP++ PI+DPGTP E+PP TPS Y SP P E+PP+ I ETP TPS G SPP PSTP +PPT +DP TP G+PPT P I P TP TP
Sbjct: 6 SLTIWAIFAAVLSQQLFASVASIK-FEDEKTYYSPPDPNAGSPPSG---TPPSHGGYTPTPPTPSHTPPSNCGSPPYDPTPPSHTPTPSTPSHTPSTPSHTPSHTSPPCHCGTPPS---HPSTPSHPSRPSHPSRPSRPSTPSNPPSGGYYSSPPPSTPVVVTPPTPIVDPGTPI-------IGETPP-----TPSGGYYSSPPPSTPVVETPPTPIVDPGTPIIGETPPTPSGGYYSSPP------PSTPIVVTPPTPIVDPGTPI--IGGTPPT----PFIDPGTPGTP 265
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A078ILF3 (((rape) hypothetical protein {ECO:0000313|EMBL:CAF1802721.1}) (BnaC04g52630D protein {ECO:0000313|EMBL:CDY50826.1}))
HSP 1 Score: 170.244 bits (430), Expect = 4.963e-45
Identity = 107/218 (49.08%), Postives = 136/218 (62.39%), Query Frame = 0
HSP 2 Score: 42.743 bits (99), Expect = 1.517e-1
Identity = 101/285 (35.44%), Postives = 124/285 (43.51%), Query Frame = 0
Match: A0A078ILF3 (((rape) hypothetical protein {ECO:0000313|EMBL:CAF1802721.1}) (BnaC04g52630D protein {ECO:0000313|EMBL:CDY50826.1}))
HSP 1 Score: 170.244 bits (430), Expect = 4.963e-45
Identity = 107/218 (49.08%), Postives = 136/218 (62.39%), Query Frame = 0
Query: 336 PSTPTYESPTTPSIDPVTPSTPTYGSPPSVDPVSPSTPTYGSPTTPSVDPVTPSTPTYGSPTTPSIDPVSPTTPTFGSSPTTPYIDPGT-GIDPNSSPFP-----CIYWSTHPTLIWGLFGFYGTTLAGAFG---LPGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLNSMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLK 544
PSTP E+P TP +DP TP + +P TP+ G ++P PSTP +P TP +DP TP G +P TP+IDPGT G +PFP C YW HPTLIWGL G++GT + GAFG +P GF P +NL+QALSNTR D G+LYREG AS LNSM +FPFTT+QVR+ F++ L S AA +QA+ F++ANEG+LK
Sbjct: 190 PSTPVVETPPTPIVDPGTP----------IIGETPPTPSGGYYSSPP-----PSTPIVVTPPTPIVDP---GTPIIGGTPPTPFIDPGTPGTPFLPAPFPPITGTCDYWRNHPTLIWGLLGWWGT-VGGAFGAVSIPSSIPGFDPHMNLLQALSNTRTDAIGSLYREGTASWLNSMVNNQFPFTTSQVRDQFLAGLSSTKAATKQAQTFKLANEGRLK 388
HSP 2 Score: 42.743 bits (99), Expect = 1.517e-1
Identity = 101/285 (35.44%), Postives = 124/285 (43.51%), Query Frame = 0
Query: 10 SLLVFGLIAGLISQNLVIPVMSAATLEDQKTYYS-PDPHGGNSHHGGSHHTPSHGSGGGHGSSPHHHKTPSHGS-----------------------------STPSNCGTGTPSSGGHHHSTPTHVHNPPT-ATPSTPSTPTH-------------------ESPPIIDPGTPTPTYGSPPTN----ESPPTIDPVTPSTPTYGSPPTTESPPS--IAPETPSTPSTG---SPPTIDPVTPSTPTYGSPPT--IDPVTPSTPTYGSPPTTESPPSIAPETPSTP 233
SL ++ + A ++SQ L V S ED+KTYYS PDP+ G+ G PSHG +P H + GS T C GTP S H STP+H P + PS PSTP++ PI+DPGTP+ T G+PP++ SPP PSTP +PPT P I ETP TPS G SPP PSTP +PPT +DP TP G+PPT P I P TP TP
Sbjct: 6 SLTIWAIFAAVLSQQLFASVASIK-FEDEKTYYSPPDPNAGSPPSG---TPPSHGGYTPTPPTPSHTPPSNCGSPPYDPTPPSHTPTPSTPSHTPSTPSHTPSHTSPPCHCGTPPS---HPSTPSHPSRPSHPSRPSRPSTPSNPPSGGYYSSPPPSTPVVVTPPTPIVDPGTPS-TGGTPPSSGGYYSSPP------PSTPVVETPPTPIVDPGTPIIGETPPTPSGGYYSSPP------PSTPIVVTPPTPIVDPGTPI--IGGTPPT----PFIDPGTPGTP 264
BLAST of DCAR_016898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3P6BEK1 ((Uncharacterized protein {ECO:0000313|EMBL:VDD04457.1}))
HSP 1 Score: 170.244 bits (430), Expect = 5.312e-45
Identity = 107/218 (49.08%), Postives = 136/218 (62.39%), Query Frame = 0
Match: A0A3P6BEK1 ((Uncharacterized protein {ECO:0000313|EMBL:VDD04457.1}))
HSP 1 Score: 170.244 bits (430), Expect = 5.312e-45
Identity = 107/218 (49.08%), Postives = 136/218 (62.39%), Query Frame = 0
Query: 336 PSTPTYESPTTPSIDPVTPSTPTYGSPPSVDPVSPSTPTYGSPTTPSVDPVTPSTPTYGSPTTPSIDPVSPTTPTFGSSPTTPYIDPGT-GIDPNSSPFP-----CIYWSTHPTLIWGLFGFYGTTLAGAFG---LPGGGTGFGPQLNLVQALSNTRNDGYGALYREGAASLLNSMAIKRFPFTTNQVRNSFISSLGSNLAAAEQARKFQMANEGQLK 544
PSTP E+P TP +DP TP + +P TP+ G ++P PSTP +P TP +DP TP G +P TP+IDPGT G +PFP C YW HPTLIWGL G++GT + GAFG +P GF P +NL+QALSNTR D G+LYREG AS LNSM +FPFTT+QVR+ F++ L S AA +QA+ F++ANEG+LK
Sbjct: 193 PSTPVVETPPTPIVDPGTP----------IIGETPPTPSGGYYSSPP-----PSTPIVVTPPTPIVDP---GTPIIGGTPPTPFIDPGTPGTPFLPAPFPPITGTCDYWRNHPTLIWGLLGWWGT-VGGAFGAVSIPSSIPGFDPHMNLLQALSNTRTDAIGSLYREGTASWLNSMVNNQFPFTTSQVRDQFLAGLSSTKAATKQAQTFKLANEGRLK 391
| Match Name | Stats | Description |
|---|---|---|
| A0A6J0JHS5 | E-Value: 8.884e-48, PID: 49.65 | (protodermal factor 1-like {ECO:0000313|RefSeq:XP_... [more] |
| M5XHX0 | E-Value: 3.490e-47, PID: 50.42 | (Uncharacterized protein {ECO:0000313|EMBL:EMJ1866... [more] |
| A0A6A2YKB6 | E-Value: 3.649e-47, PID: 47.31 | (Protodermal factor 1 {ECO:0000313|EMBL:KAE8678467... [more] |
| A0A251Q1G1 | E-Value: 4.977e-46, PID: 50.42 | (Uncharacterized protein {ECO:0000313|EMBL:ONI1764... [more] |
| A0A5E4FKM3 | E-Value: 1.026e-45, PID: 50.42 | (Full=PREDICTED: protodermal factor 1 {ECO:0000313... [more] |
| A0A5N6L0Y4 | E-Value: 1.479e-45, PID: 51.81 | (Uncharacterized protein {ECO:0000313|EMBL:KAB8518... [more] |
| A0A6J5UID4 | E-Value: 2.372e-45, PID: 50.85 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4273... [more] |
| A0A2R9ZKB1 | E-Value: 3.734e-45, PID: 49.08 | (Nucleus degradation inhibitor 1 {ECO:0000313|EMBL... [more] |
| A0A078ILF3 | E-Value: 4.963e-45, PID: 49.08 | ((rape) hypothetical protein {ECO:0000313|EMBL:CAF... [more] |
| A0A3P6BEK1 | E-Value: 5.312e-45, PID: 49.08 | (Uncharacterized protein {ECO:0000313|EMBL:VDD0445... [more] |
Pages
back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |