DCAR_016845

Resource Type: 
Polypeptide
Name: 
DCAR_016845
Identifier: 
DCAR_016845.mRNA-protein
Sequence: 
MAAATQFEDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTR
NLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFA
KAHRIPFVNDCVFVSPNDHIQSVEEFCESPCVFVTETGNRSSKVLGVVNK
FDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLVR
NGEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERL
EHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQA
QNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIP
VIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKK
YRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMH
AVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKK
SF*
Sequence Length: 
503
Sequence Checksum: 
e2e35e03f987c3f6e8d215653bcb0557
View location in JBrowse: 
DCARv2_Chr5:8276694..8279004-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_016845, derives from mRNA, DCAR_016845.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7MN19 (Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928} (IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPD {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPDH {ECO:0000256|HAMAP-Rule:MF_03156}) (1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928}))

HSP 1 Score: 811.216 bits (2094), Expect = 0.000e+0
Identity = 396/505 (78.42%), Postives = 445/505 (88.12%), Query Frame = 0
 
Query:    1 MAAATQFEDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTRNLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFAKAHRIPFVN-DCVFVSPNDHIQSVEEFCESPCVFVTETGNRS-SKVLGVVNKFDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLVR-NGEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERLEHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQAQNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKKYRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMHAVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKKSF 502
            M  A   EDGFPAT+LFNQG+SYTYDDVIFLPHYIDFP+DSVQL TKL+RN+NLS+PCVASPMDTVTEASMAVSMA+LGGIGI+HSNN+A EQ+S++  AK+HRIPF + D  F+SP+D I S   F  SPCVF+T  G++S  K+LGVV+K  WE   D+  AR+S YM ++VV +P+TY F+DVAGYLA K +D+VPLV   GEV D+VS  DVER++GFPK+G LPS+G+NGEFLVGASIGTRESDK+RLEHLVKAGA+VIV+DSSQGNSIYQIEMIKY K+ +PELDLIGGNVVTM QAQNLIQAGVD LRVGMGSGSICTTQEVCAVGRGQATAVYKV+S+A +SGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGS EAPG Y  + G RVKKYRGMGSLEAMTKGSDARYLGDT K+KIAQGVVGAVADKGSV +FIPYTM AVKQGFQDLGASSL+SAH LLRSGVLRLEVRTGAAQ EGG+HGLVSYEKKSF
Sbjct:    1 MTTAGDMEDGFPATRLFNQGYSYTYDDVIFLPHYIDFPSDSVQLNTKLSRNINLSVPCVASPMDTVTEASMAVSMAALGGIGIIHSNNTASEQSSLIRSAKSHRIPFASSDIPFLSPDDSISSGSVFDSSPCVFITTNGSKSDKKLLGVVDKLTWEGLADKE-ARISSYMQKNVVTLPNTYKFEDVAGYLATKEMDFVPLVSGEGEVIDVVSKWDVERIKGFPKSG-LPSVGENGEFLVGASIGTRESDKQRLEHLVKAGANVIVIDSSQGNSIYQIEMIKYAKKMFPELDLIGGNVVTMNQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSVAAKSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSTEAPGAYTNQGGQRVKKYRGMGSLEAMTKGSDARYLGDTAKMKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSGVLRLEVRTGAAQVEGGVHGLVSYEKKSF 503
[Close]
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A124S6G0 (Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928} (IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPD {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPDH {ECO:0000256|HAMAP-Rule:MF_03156}) (1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928}))

HSP 1 Score: 809.29 bits (2089), Expect = 0.000e+0
Identity = 393/505 (77.82%), Postives = 449/505 (88.91%), Query Frame = 0
 
Query:    1 MAAATQFEDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTRNLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFAKAHRIPFV-NDCVFVSPNDHIQSVEEFCESPCVFVTETGNRS-SKVLGVVNKFDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLVR-NGEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERLEHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQAQNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKKYRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMHAVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKKSF 502
            MAA  + EDGFPAT+LFNQG+SYTYDDVIFLPHYIDFPTDSVQL TKL+RN+NLS+PCVASPMDTVTEASMAVSMA+LGGIGI+HSNN+  EQ+S++  AK+HRIPF   D  FVSP+D I S   F  SPCVFV   G++S +K+LGVV+K  WE   D+  ARVS YM ++++ +P+TY F+DVAGYLAAK LD+VPLV  NGEV D+VS  DVER+RGFPK G LPS+G++GEFLVGASIGTRESDK+RLE+LV+AG ++IV+DSSQGNSIYQIEMIKY K+TYP+LD++GGNVVTM QAQNLIQAGVD LRVGMGSGSICTTQEVCAVGRGQATAVYKV+S+A QSGIP+IADGGISNSGHIVKALTLGASTVMMGSFLAGS EAPG Y+Y+ GHR+KKYRGMGSLEAMTKGSDARYLGDT K+KIAQGVVGAVADKGSV +FIPY MHAVKQGFQDLGASSL+SAH +LRSG+LRLEVRTGAAQ EGG+HGL+SYEKKSF
Sbjct:    1 MAAVGEMEDGFPATRLFNQGYSYTYDDVIFLPHYIDFPTDSVQLNTKLSRNINLSVPCVASPMDTVTEASMAVSMAALGGIGIIHSNNTPSEQSSLIRSAKSHRIPFACTDIPFVSPDDSISSASVFETSPCVFV---GSKSDNKLLGVVDKLTWEGLADKE-ARVSSYMEKNMITLPNTYKFEDVAGYLAAKELDFVPLVSGNGEVVDVVSKADVERIRGFPK-GGLPSVGEDGEFLVGASIGTRESDKKRLEYLVEAGVNLIVIDSSQGNSIYQIEMIKYAKKTYPDLDVVGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSVAAQSGIPIIADGGISNSGHIVKALTLGASTVMMGSFLAGSTEAPGAYQYQGGHRIKKYRGMGSLEAMTKGSDARYLGDTAKMKIAQGVVGAVADKGSVLKFIPYAMHAVKQGFQDLGASSLQSAHDMLRSGILRLEVRTGAAQVEGGVHGLLSYEKKSF 500
[Close]
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6M8X6 (Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928} (IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPD {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPDH {ECO:0000256|HAMAP-Rule:MF_03156}) (1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928}))

HSP 1 Score: 806.594 bits (2082), Expect = 0.000e+0
Identity = 393/505 (77.82%), Postives = 445/505 (88.12%), Query Frame = 0
 
Query:    1 MAAATQFEDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTRNLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFAKAHRIPFVN-DCVFVSPNDHIQSVEEFCESPCVFVTETGNRS-SKVLGVVNKFDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLVR-NGEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERLEHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQAQNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKKYRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMHAVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKKSF 502
            M  A   EDGFPAT+LFNQG+SYTYDDVIFLPHYIDFPTD+VQL TKL+RN+NLS+PCV+SPMDTVTEASMAVSMA+LGGIGI+HSNN+A EQ+S++  AK+HRIPF + D  F+SP+D I S   F  SPCVF+T  G++S  K+LGVV+K  WE   D+  AR+S YM ++VV +P+TY F+DVAGYLA K +D+VPLV   GEV D+VS  DVER++GFPK+G LPS+G+NGEFLVGASIGTRESDK+RLEHLVKAGA+VIV+DSSQGNSIYQIEMIKY K+ +P+LD+IGGNVVTM QAQNLIQAGVD LRVGMGSGSICTTQEVCAVGRGQATAVYKV+S+A +SGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGS EAPG Y  + G RVKKYRGMGSLEAMTKGSDARYLGDT K+KIAQGVVGAVADKGSV +FIPYTM AVKQGFQDLGASSL+SAH LLRSGVLRLEVRTGAAQ EGG+HGLVSYEKKSF
Sbjct:    1 MTTAGDMEDGFPATRLFNQGYSYTYDDVIFLPHYIDFPTDAVQLNTKLSRNINLSVPCVSSPMDTVTEASMAVSMAALGGIGIIHSNNTASEQSSLIRSAKSHRIPFASSDIPFLSPDDSISSGSIFDSSPCVFITTNGSKSDKKLLGVVDKLTWEGLADKE-ARISSYMQKNVVTLPNTYKFEDVAGYLATKEMDFVPLVSGEGEVIDVVSKWDVERIKGFPKSG-LPSVGENGEFLVGASIGTRESDKQRLEHLVKAGANVIVIDSSQGNSIYQIEMIKYAKKMFPDLDVIGGNVVTMNQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSVAAKSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSTEAPGAYTNQGGQRVKKYRGMGSLEAMTKGSDARYLGDTAKMKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSGVLRLEVRTGAAQVEGGVHGLVSYEKKSF 503
[Close]
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZYQ0 (Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928} (IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPD {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPDH {ECO:0000256|HAMAP-Rule:MF_03156}) (1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928}))

HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0
Identity = 390/498 (78.31%), Postives = 448/498 (89.96%), Query Frame = 0
 
Query:    7 FEDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTRNLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFAKAHRIPFVNDCVFVSPNDHIQSVEEFCESPCVFVTETGNRSSKVLGVVNKFDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLV--RNGEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERLEHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQAQNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKKYRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMHAVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKKSF 502
            F+DGFPA +LFNQG+SYTYDDVIFLPHYIDFPTD+VQLATKLTRN++LSIPCV+SPMDTVTE+SMAV+MA+LGGIGIVHSNN+A +QA+++  AK+HRIPFV+D +FVSP+D I SV+EF  SPC+ VTE+G + SK LGVV K DW+   D+   +V DYM +S+ +VPS+YNF++VA YLAAK+L++VPLV  ++GEV D+V+  DVER+RGFPK G +PS+G +G+F+VGASIGTRESDKERLE LVKAG +V+VLDSSQGNSIYQIEMIKY K+ YPELD+IGGNVVTM QAQNLIQAGVD LRVGMGSGSICTTQEVCAVGRGQATAVYKV+SIAEQSG+P+IADGGISNSGHIVKAL LGASTVMMGSFLAGS EAPG YEY+ G R+KKYRGMGSLEAMTKGSDARYLGDT KLKIAQGVVGAVADKGSV +FIPYTM AVKQGFQDLGASSL+SAH LL+SGVLR EVRTGAAQ EGG+HGLVSYEKKSF
Sbjct:    6 FDDGFPAVRLFNQGYSYTYDDVIFLPHYIDFPTDAVQLATKLTRNVSLSIPCVSSPMDTVTESSMAVAMAALGGIGIVHSNNTASDQAALIRQAKSHRIPFVSDPIFVSPSDSITSVDEFASSPCILVTESGTKKSKFLGVVTKSDWQALNDKE-VKVRDYMTKSLASVPSSYNFEEVAAYLAAKDLEFVPLVNEKDGEVVDVVTAADVERIRGFPKLG-MPSMGPDGKFMVGASIGTRESDKERLEELVKAGINVVVLDSSQGNSIYQIEMIKYAKKMYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAEQSGVPIIADGGISNSGHIVKALVLGASTVMMGSFLAGSNEAPGAYEYQGGRRIKKYRGMGSLEAMTKGSDARYLGDTAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLKSGVLRQEVRTGAAQVEGGVHGLVSYEKKSF 501
[Close]
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G4T8 (Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928} (IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPD {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPDH {ECO:0000256|HAMAP-Rule:MF_03156}) (1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928}))

HSP 1 Score: 804.283 bits (2076), Expect = 0.000e+0
Identity = 385/498 (77.31%), Postives = 441/498 (88.55%), Query Frame = 0
 
Query:    7 FEDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTRNLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFAKAHRIPFVNDCVFVSPNDHIQSVEEFCESPCVFVTETGNRSSKVLGVVNKFDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLV--RNGEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERLEHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQAQNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKKYRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMHAVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKKSF 502
             +DGFPA +LFNQG+SYTYDDVIFLPHYIDFPTDSVQL+TKL+RNLNLSIPCVASPMDTVTE+SMAVSMA+LGGI IVHSNNSA +QAS++  AK+HRIPFV+D +F SP+D I S++EF  SPC+ +TE+G   SK+LG V K DW+   D+  + VS YM +S V+ PS Y+F+ VA YLAAKNL++VPLV   +GEV D+V+  DVER+RGFPK G +PS+G +G+F+VGA+IGTRESDKERLEHLVKAGA+V+VLDSSQGNSIYQIEMIKYVK+TYPELD+IGGNVVTM QA +LIQAGVD LRVGMGSGSICTTQEVCAVGRGQATAVYKV+S+AE+SG+PVIADGGISNSGHIVK L LGASTVMMGSFLAGS EAPG YEY+ G R+KKYRGMGSLEAMTKGSDARYLGD  KLKIAQGVVGAVADKGSV +F+PY M AVKQGFQDLGASSL+SAH LLRSG+LRLEVRTGAAQ EGG+HGLVSY+KKSF
Sbjct:    6 MDDGFPAERLFNQGYSYTYDDVIFLPHYIDFPTDSVQLSTKLSRNLNLSIPCVASPMDTVTESSMAVSMAALGGIAIVHSNNSASDQASIIRSAKSHRIPFVSDLIFKSPSDFINSMDEFGSSPCILITESGTGKSKLLGAVTKSDWQALNDKETS-VSYYMAKSPVSAPSDYDFEQVAAYLAAKNLEFVPLVNEEDGEVVDMVTAADVERIRGFPKMG-MPSVGPDGKFMVGAAIGTRESDKERLEHLVKAGANVVVLDSSQGNSIYQIEMIKYVKKTYPELDVIGGNVVTMYQAHSLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSVAERSGVPVIADGGISNSGHIVKGLVLGASTVMMGSFLAGSNEAPGAYEYQGGCRIKKYRGMGSLEAMTKGSDARYLGDKAKLKIAQGVVGAVADKGSVLKFVPYAMQAVKQGFQDLGASSLQSAHDLLRSGILRLEVRTGAAQVEGGVHGLVSYKKKSF 501
[Close]
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BHS8 (Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928} (IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPD {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPDH {ECO:0000256|HAMAP-Rule:MF_03156}) (1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928}))

HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 394/497 (79.28%), Postives = 445/497 (89.54%), Query Frame = 0
 
Query:    8 EDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTRNLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFAKAHRIPFVNDCVFVSPNDHIQSVEEFCESPCVFVTETGNRSSKVLGVVNKFDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLV--RNGEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERLEHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQAQNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKKYRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMHAVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKKSF 502
            +DGFPA +LFNQG+SYTYDDVIFLPHYIDFPTDSVQLATKLTRN++LSIPCVASPMDTVTE+SMAV+MA+LGGIGIVHSNN+  +QA+++  AK+HRIPFV+D +FVSP+D I SV+EF  SP + VTE+G + SK LGVV K DW+   D+  ARV DYM +S+ +VPS+YNF++VA YLAAKNL++VPLV  ++GEV D+V+  DVER+RGFPK G  PS+G +G F+VGASIGTRESDKERLEHLVKAG +V+VLDSSQGNSIYQIEMIKYVK+ YPELD+IGGNVVTM QAQNLIQAGVD LRVGMGSGSICTTQEVCAVGRGQATAVYKV+S+AEQSG+PVIADGGISNSGHIVKAL LGASTVMMGSFLAGS EAPGTYEY+ G R+K YRGMGSLEAMTKGSDARYLGDT KLKIAQGVVGAVADKGS+ +FIPY M AVKQGFQDLGASSL+SAH LLRSGVLR EVRTGAAQ EGGIHGLVSYEKKSF
Sbjct:    7 DDGFPAVRLFNQGYSYTYDDVIFLPHYIDFPTDSVQLATKLTRNVSLSIPCVASPMDTVTESSMAVAMAALGGIGIVHSNNTPSDQAALIRHAKSHRIPFVSDPIFVSPSDSITSVDEFASSPFILVTESGTKKSKFLGVVTKSDWQALNDKE-ARVCDYMTKSLASVPSSYNFEEVAAYLAAKNLEFVPLVNEKDGEVVDVVTAADVERIRGFPKLGT-PSIGPDGGFIVGASIGTRESDKERLEHLVKAGINVVVLDSSQGNSIYQIEMIKYVKKMYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSVAEQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSNEAPGTYEYQGGRRIKTYRGMGSLEAMTKGSDARYLGDTAKLKIAQGVVGAVADKGSILKFIPYAMQAVKQGFQDLGASSLQSAHDLLRSGVLRQEVRTGAAQVEGGIHGLVSYEKKSF 501
[Close]
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834H4V2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7146957.1}))

HSP 1 Score: 803.512 bits (2074), Expect = 0.000e+0
Identity = 389/499 (77.96%), Postives = 443/499 (88.78%), Query Frame = 0
 
Query:    7 FEDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTRNLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFAKAHRIPFVNDCVFVSPNDHIQSVEEFCESP-CVFVTETGNRSSKVLGVVNKFDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLV--RNGEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERLEHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQAQNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKKYRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMHAVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKKSF 502
             +DGFPA +LF QG+SYTYDDVIFLPHYIDFPTDSVQL+TKLTRNLNLSIPCVASPMDTVTE+SMAV+MA+LGGIGIVHSNNS  +QA+++  AK+HRIPFV+D +F SP+D I SV EF  SP C+ VTE+G R SK+LGVV K DWE   D++ ARVSDYMV+S ++ PS Y+ + VA +LAAKNL++VPLV  ++G+V D+VS  DV+R+RGFPK G +PS+G +G+F+VGA+IGTRESDKERLE LVKAGA+VIVLDSSQGNS YQI+MIKYV +TYPELD+IGGNVVTM QA NLIQAGV  LRVGMGSGSICTTQEVCAVGRGQATAVYKV+SIAE+SG+PVIADGGISNSGHIVKAL LGASTVMMGSFLAGS EAPG YEY+ GHRVKKYRGMGSLEAM KGSDARYLGDT KLKIAQGVVGAVADKGSV +F+PY M AVKQGFQDLGASSL+SAH+LLRS VLRLEVR+GAAQ EGG+HGLVSYEKKSF
Sbjct:    6 IDDGFPAERLFKQGYSYTYDDVIFLPHYIDFPTDSVQLSTKLTRNLNLSIPCVASPMDTVTESSMAVAMAALGGIGIVHSNNSPSDQAAIIRSAKSHRIPFVSDLIFKSPSDSIDSVWEFGSSPTCILVTESGTRKSKLLGVVTKSDWEALNDKQ-ARVSDYMVKSTISAPSDYDLEQVAVFLAAKNLEFVPLVNEKDGQVVDVVSATDVDRIRGFPKLG-MPSMGSDGKFMVGAAIGTRESDKERLEQLVKAGANVIVLDSSQGNSSYQIDMIKYVMKTYPELDVIGGNVVTMNQAHNLIQAGVGGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAERSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSNEAPGAYEYQGGHRVKKYRGMGSLEAMMKGSDARYLGDTAKLKIAQGVVGAVADKGSVLKFLPYNMQAVKQGFQDLGASSLQSAHELLRSSVLRLEVRSGAAQVEGGVHGLVSYEKKSF 502
[Close]
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A0Z0 (Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928} (IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPD {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPDH {ECO:0000256|HAMAP-Rule:MF_03156}) (1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928}))

HSP 1 Score: 800.816 bits (2067), Expect = 0.000e+0
Identity = 388/498 (77.91%), Postives = 447/498 (89.76%), Query Frame = 0
 
Query:    7 FEDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTRNLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFAKAHRIPFVNDCVFVSPNDHIQSVEEFCESPCVFVTETGNRSSKVLGVVNKFDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLV--RNGEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERLEHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQAQNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKKYRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMHAVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKKSF 502
            F+DGFPA +LFNQG+SYTYDDVIFLPHYIDFPTD+VQLATKLTRN++LSIPCV+SPMDTVTE+SMAV+MA+LGGIGIVHSNN+A +QA+++  AK+HRIPFV+D +FVSP+D I SV+EF  SPC+ VTE+G + SK LGVV K DW+   D+   +V DYM +S+ +VPS+YNF++VA YLAAK+L++V LV  ++GEV D+V+  DVER+RGFPK G +PS+G +G+F+VGASIGTRESDKERLE LVKAG +V+VLDSSQGNSIYQIEMIKY K+ YPELD+IGGNVVTM QAQNLIQAGVD LRVGMGSGSICTTQEVCAVGRGQA+AVYKV+SIAEQSG+P+IADGGISNSGHIVKAL LGASTVMMGSFLAGS EAPG YEY+ G R+KKYRGMGSLEAMTKGSDARYLGDT KLKIAQGVVGAVADKGSV +FIPYTM AVKQGFQDLGASSL+SAH LL+SGVLR EVRTGAAQ EGG+HGLVSYEKKSF
Sbjct:    6 FDDGFPAVRLFNQGYSYTYDDVIFLPHYIDFPTDAVQLATKLTRNVSLSIPCVSSPMDTVTESSMAVAMAALGGIGIVHSNNTASDQAALIRQAKSHRIPFVSDPIFVSPSDSITSVDEFASSPCILVTESGTKKSKFLGVVTKSDWQALNDKE-VKVRDYMTKSLASVPSSYNFEEVAAYLAAKDLEFVSLVNEKDGEVVDVVTAADVERIRGFPKLG-MPSMGPDGKFMVGASIGTRESDKERLEELVKAGINVVVLDSSQGNSIYQIEMIKYAKKMYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQASAVYKVSSIAEQSGVPIIADGGISNSGHIVKALVLGASTVMMGSFLAGSNEAPGAYEYQGGRRIKKYRGMGSLEAMTKGSDARYLGDTAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLKSGVLRQEVRTGAAQVEGGVHGLVSYEKKSF 501
[Close]
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6KPP7 (Inosine-5'-monophosphate dehydrogenase {ECO:0000256|RuleBase:RU003928} (1.1.1.205 {ECO:0000256|RuleBase:RU003928}))

HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 389/498 (78.11%), Postives = 432/498 (86.75%), Query Frame = 0
 
Query:    7 FEDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTRNLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFAKAHRIPFVN-DCVFVSPNDHIQSVEEFCESPCVFVTETGNRSSKVLGVVNKFDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLVR-NGEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERLEHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQAQNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKKYRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMHAVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKKSF 502
             EDGFPAT+LFNQG+SYTYDDVIFLPHYIDF TDSVQL TKL+RN+NLSIPCVASPMDTVTEASMAVSMA+LGGIGI+HSNN+A EQ+S++  AK+HRIPF + D  F+SP+D I S   F  SPCVF+T   N  + +LGVV+K  WE   D+  AR+S YM ++VV +P+T N  DVAGYL  K +D+VPLV   GEV D+VS  DVER+ GFPKT   PS+G+NGEFLVGASIGTRE DKERLEH+VKAGA+VIV+DSSQGNSIYQIEMIKYVK+T+P LD+IGGNVVTM QAQNLIQAGVD LRVGMGSGSICTTQEVCAVGRGQATAVYKV+S+A QSG+PVIADGGISNSGHIVKALTLGASTVMMGSFLAGS EAPG Y  + G RVKKYRGMGSLEAM KGSDARYLGDT K+KIAQGVVGAVADKGSV +FIPYTMHAVKQGFQDLGASSL SAH LLRSGVLRLEVRTGAAQ EGG+HGLVSYEKKSF
Sbjct:    1 MEDGFPATRLFNQGYSYTYDDVIFLPHYIDFSTDSVQLNTKLSRNINLSIPCVASPMDTVTEASMAVSMAALGGIGIIHSNNTASEQSSLIRSAKSHRIPFASTDIPFLSPDDSISSASVFNNSPCVFITNDKNNKN-LLGVVDKLTWESLPDKE-ARISSYMQKNVVTLPNTCNLKDVAGYLTKKEMDFVPLVSGEGEVIDVVSKWDVERINGFPKTSGFPSVGENGEFLVGASIGTREKDKERLEHVVKAGANVIVIDSSQGNSIYQIEMIKYVKKTFPNLDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSVAAQSGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSTEAPGAYTNQGGERVKKYRGMGSLEAMRKGSDARYLGDTAKMKIAQGVVGAVADKGSVLKFIPYTMHAVKQGFQDLGASSLYSAHDLLRSGVLRLEVRTGAAQVEGGVHGLVSYEKKSF 496
[Close]
BLAST of DCAR_016845 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9FZM4 (Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928} (IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPD {ECO:0000256|HAMAP-Rule:MF_03156}) (IMPDH {ECO:0000256|HAMAP-Rule:MF_03156}) (1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_03156, ECO:0000256|RuleBase:RU003928}))

HSP 1 Score: 793.112 bits (2047), Expect = 0.000e+0
Identity = 383/504 (75.99%), Postives = 438/504 (86.90%), Query Frame = 0
 
Query:    1 MAAATQFEDGFPATKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATKLTRNLNLSIPCVASPMDTVTEASMAVSMASLGGIGIVHSNNSAVEQASVVEFAKAHRIPFVNDCVFVSPNDHIQSVEEFCESPCVFVTETGNRSSKVLGVVNKFDWEKCGDRRNARVSDYMVESVVNVPSTYNFDDVAGYLAAKNLDYVPLVRN--GEVFDIVSVGDVERVRGFPKTGALPSLGKNGEFLVGASIGTRESDKERLEHLVKAGADVIVLDSSQGNSIYQIEMIKYVKRTYPELDLIGGNVVTMAQAQNLIQAGVDALRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAEQSGIPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSREAPGTYEYKNGHRVKKYRGMGSLEAMTKGSDARYLGDTNKLKIAQGVVGAVADKGSVSRFIPYTMHAVKQGFQDLGASSLESAHKLLRSGVLRLEVRTGAAQTEGGIHGLVSYEKKSF 502
            M  A   +DGFPATKLFNQG+SYTYDDVIFLPHYIDFPTD+V L+TKL+R + L+ PCVASPMDTVTE+SMA +MASLG IGI+HSN +A  QAS+V  AK+H+IPF +D +F SP+D I   ++F  SPC+FVTE+GN +SK+LG V K  WEK  D ++ RVS+YM +S V++P+ Y+F+DVAGYLA   L +VPLVR    E+ ++V+  DVER++GFPK G LPS+G +G+FLVGA+IGTR+SDKERLEHLVKAG +V+VLDSSQGNSIYQIEMIKYVK+TYP+LDLIGGNVVT  QAQNLIQAGVD LRVGMGSGSICTTQEVCAVGRGQATAVYKVASIA +SG+PVIADGGISNSGHIVKALTLGASTVMMGSFLAGS EAPGTYEY+ G RVKKYRGMGSLEAMTKGSDARYLGD  KLKIAQGVVGAVADKGSV + IPYTM AVKQGFQDLGASSL+SAH LLR+GVLRLEVRTGAAQ EGG+HGLVSYEKKSF
Sbjct:    1 MDGAQLLDDGFPATKLFNQGYSYTYDDVIFLPHYIDFPTDAVSLSTKLSRRVALATPCVASPMDTVTESSMAAAMASLGAIGIIHSNTTASHQASLVRLAKSHKIPFNHDLIFKSPSDSILLADDFSSSPCIFVTESGNENSKLLGTVEKSVWEKL-DDKDVRVSEYMTKSPVSLPANYSFEDVAGYLAKNKLQFVPLVREEGQEIVNLVTADDVERIQGFPKLG-LPSVGSDGKFLVGAAIGTRQSDKERLEHLVKAGVNVVVLDSSQGNSIYQIEMIKYVKKTYPDLDLIGGNVVTAYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAESGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSNEAPGTYEYQGGRRVKKYRGMGSLEAMTKGSDARYLGDKAKLKIAQGVVGAVADKGSVLKLIPYTMQAVKQGFQDLGASSLQSAHDLLRTGVLRLEVRTGAAQVEGGVHGLVSYEKKSF 502
Match NameStatsDescription
A0A6S7MN19E-Value: 0.000e+0, PID: 78.42Inosine-5'-monophosphate dehydrogenase {ECO:000025... [more]
A0A124S6G0E-Value: 0.000e+0, PID: 77.82Inosine-5'-monophosphate dehydrogenase {ECO:000025... [more]
A0A2J6M8X6E-Value: 0.000e+0, PID: 77.82Inosine-5'-monophosphate dehydrogenase {ECO:000025... [more]
A0A5J4ZYQ0E-Value: 0.000e+0, PID: 78.31Inosine-5'-monophosphate dehydrogenase {ECO:000025... [more]
A0A7J0G4T8E-Value: 0.000e+0, PID: 77.31Inosine-5'-monophosphate dehydrogenase {ECO:000025... [more]
A0A5B7BHS8E-Value: 0.000e+0, PID: 79.28Inosine-5'-monophosphate dehydrogenase {ECO:000025... [more]
A0A834H4V2E-Value: 0.000e+0, PID: 77.96(Uncharacterized protein {ECO:0000313|EMBL:KAF7146... [more]
A0A5J5A0Z0E-Value: 0.000e+0, PID: 77.91Inosine-5'-monophosphate dehydrogenase {ECO:000025... [more]
A0A2J6KPP7E-Value: 0.000e+0, PID: 78.11Inosine-5'-monophosphate dehydrogenase {ECO:000025... [more]
A0A2G9FZM4E-Value: 0.000e+0, PID: 75.99Inosine-5'-monophosphate dehydrogenase {ECO:000025... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.