Resource Type:
Polypeptide
Name:
DCAR_019585
Identifier:
DCAR_019585.mRNA-protein
Sequence:
MADKQSLTLAFSLILLLSLSSARLLPNTTAVDLISDGSTQSQPLLRLYAT
SEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEI
LGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGST
VMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAA
MIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQ
PWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREDTAGGETI
KHLTRYHEQTKREHFLLGDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAA
AFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKL
RSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCI
VMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS*
Sequence Length:
492
Sequence Checksum:
ad19fb8e50b55f3a6e4f81efbb61f9ad
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_019585, derives from mRNA, DCAR_019585. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7CAF7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5730726.1}))
HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 372/559 (66.55%), Postives = 427/559 (76.39%), Query Frame = 0
Match: A0A7J7CAF7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5730726.1}))
HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 372/559 (66.55%), Postives = 427/559 (76.39%), Query Frame = 0
Query: 20 SSARLLPNTTAVDLISDG--STQSQPLLRLYATSEA---KECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEP--------------NRE-----------------------------------DTAGG------ETIKHLTRYHEQTKR-------------------------EHFLLG--DQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 491
++ R LP +++DL+SDG S + P L L + S A + CE+TYGFLPCT T LGNLFLIL YGYLMF +ATYLS+GSELLLEILGPGI+GGLFLPVLGALPDAMLILVSG+SG+ ETAQ QVSVGMGLLAGSTVMLLTVIWGTC++VGKCDI DS+A DG++T+G SLTG+GV+ D+WT YAAMIMA+S++PFLVVQLPQVLHSTSGRHLAVLIAL+ISVS+LISYCLYQVFQPWIQRRRI YAKHKHVISG+LKH ALG+L+ + GEP N++ DT+G E ++ +T++ ++ KR EH LLG DQSDEVVEGVEN +W + KAVL+LLLG +IAAAFADPLVDAVDNFS ATSIP+FFISFIALP ATNSSEAVSAIIFASRKKLR+ASLTFSE+YGAVTMNNILCLSVFLALVYVRGL WDFSSEVLVILIVCIVMGALGS+RTTFPLWT S+A+LLYPFSLALVYVLDY++GWS
Sbjct: 22 ANGRDLP--SSLDLVSDGLQSERDPPYLLLKSFSAAGVEESCEQTYGFLPCTKTTLGNLFLILVYGYLMFTSATYLSSGSELLLEILGPGIIGGLFLPVLGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVMLLTVIWGTCIIVGKCDIHDSIARDGQNTKGFSLTGNGVSTDVWTCYAAMIMAISVIPFLVVQLPQVLHSTSGRHLAVLIALIISVSMLISYCLYQVFQPWIQRRRIVYAKHKHVISGMLKHF--HALGKLMTDDGEPDIDAIKKLFVAIDANKDEQISATELKALIIGIGFQEIDLDKDDSMTKLMEDFDTSGNSEIDMEEFVRGITKWLDEAKRACATSEGRGSQTWKFIDDFHLQTKREHALLGPEDQSDEVVEGVENSRWISFKAVLMLLLGTIIAAAFADPLVDAVDNFSDATSIPTFFISFIALPLATNSSEAVSAIIFASRKKLRTASLTFSEIYGAVTMNNILCLSVFLALVYVRGLTWDFSSEVLVILIVCIVMGALGSLRTTFPLWTCSVAYLLYPFSLALVYVLDYVYGWS 576
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3JC99 ((Sodium/calcium exchanger membrane region {ECO:0000313|EMBL:OMO92397.1}))
HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 357/514 (69.46%), Postives = 411/514 (79.96%), Query Frame = 0
Match: A0A1R3JC99 ((Sodium/calcium exchanger membrane region {ECO:0000313|EMBL:OMO92397.1}))
HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 357/514 (69.46%), Postives = 411/514 (79.96%), Query Frame = 0
Query: 29 TAVDLISDG--STQSQPLLRLYATSEAKE-CEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPN-----------REDTAGGETIKHLT------RYHE-----------------------------QTKREHFLLG--DQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 491
+ DL+SDG + ++ P L L A+E CE+TYGFLPCTTT LGNLFLI+ YGY M+LAATYLS GSELLLEILGPGIVGGLFLP+LGALPDAMLILVSG+SGT + AQ QVSVGMGLLAGSTVMLLTVIWG+CVVVG+ D+ DSVA+DG+ T+G+SLT +G++ DIWT YAA IMA+S++PF++VQLPQ+L+STSGRHLAVLIA ++S+S+LI+YCLYQVFQPWIQRRR+ YAKHKHVISG+LKHLK ALG+LLN+ GEPN E+ GG + L R+ E QTKREH LLG +QSDEVVEGVENP+ TIKAVL+LL+G +IAAAFADPLVDAVDNFS ATSIPSFFISFIALP ATNSSEAVSAIIFASRK R++SLTFSELYGAVTMNN+LCLSVFLALVYVRGL WDFSSEVLVILIVC+VMGA S RTTFPLWT S+A++LYPFSLALVYVLDY+FGWS
Sbjct: 28 SPTDLVSDGISAVKNPPYLLLKPQFSAEESCEQTYGFLPCTTTALGNLFLIIVYGYFMYLAATYLSNGSELLLEILGPGIVGGLFLPMLGALPDAMLILVSGLSGTTDVAQSQVSVGMGLLAGSTVMLLTVIWGSCVVVGRSDLRDSVAVDGRLTKGISLTETGISTDIWTCYAARIMAISVIPFIIVQLPQLLNSTSGRHLAVLIAFIVSLSMLIAYCLYQVFQPWIQRRRLAYAKHKHVISGILKHLKKSALGKLLNDDGEPNTEVIRKLFGTIDENGDGGLSPSELKAFIIGIRFEEIDLDKDDAVTKVMADFDTSRDSLVQEDEFQTKREHDLLGSEEQSDEVVEGVENPKKITIKAVLMLLVGTIIAAAFADPLVDAVDNFSDATSIPSFFISFIALPLATNSSEAVSAIIFASRKNKRTSSLTFSELYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILIVCLVMGAFASFRTTFPLWTCSVAYILYPFSLALVYVLDYVFGWS 541
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A3N4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50251.1}))
HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0
Identity = 370/576 (64.24%), Postives = 422/576 (73.26%), Query Frame = 0
Match: A0A5B7A3N4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50251.1}))
HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0
Identity = 370/576 (64.24%), Postives = 422/576 (73.26%), Query Frame = 0
Query: 1 MADKQSLTLAFSLILLLSLSSARLLPN--TTAVDLISDG---STQSQPLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPN--------------------------------------REDTAGGETIKHL-TRYHEQTKREHFL------------LGDQSDEVVEG-----------------------------VENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 491
MA +QSLT +L++L L+ RL+ + +T DLISDG + LLRL + C++TYGF+PCTTT LGNLFLI+ YGYLMFLAATYLS GSELLL+ILGPGIVGGLFLPVLGALPDAMLILVSG+SG+ TAQ QVSVGMGLLAGSTVMLLTVIWGTCVVVGKCD++ S+A DGKD +G SLTGSGV+ DIWTSYAA IMA+S++PFLVVQLPQVLHSTSGRHLAVLIAL++S+ LL+SYCLYQVFQPWIQ RR+ YAKHKHVISG+LKHL+ R+LGRLL + G+PN ED A + +K T ++ Q + E F+ GD S + G VENP+WT+ KAVLLLLLG VIAAAFADPLVDAVDNFSSAT IP+FFISFIALP ATNSSEAV+AIIFASRKK R+ASLTFSELYGAVTMNN+LCLSVFLALVYVRGL WDFS+EVLVILIVCIVMGA S RT FPLWT+SIAF+LYPFSLALVYVLDY+FGWS
Sbjct: 1 MAVRQSLTFLTTLLILCGLAYGRLITDRPSTRSDLISDGVHHDFRGPSLLRLNPFYASDSCDQTYGFMPCTTTALGNLFLIIVYGYLMFLAATYLSNGSELLLKILGPGIVGGLFLPVLGALPDAMLILVSGLSGSTGTAQSQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDLQGSIATDGKDIKGFSLTGSGVSTDIWTSYAARIMAISVIPFLVVQLPQVLHSTSGRHLAVLIALIVSLVLLVSYCLYQVFQPWIQSRRLAYAKHKHVISGILKHLRKRSLGRLLTDDGKPNLDFIAKLFTMIDGNGDGSISLPELRAFIVGIRFEEINLDEDDAVDKVMKDFDTSHNSQIEPEEFINGISKWLEEAKHSGDSSSKAHPGAIKYLSNFHEQTKREHDLLGDQSDEVVEGVENPRWTSFKAVLLLLLGTVIAAAFADPLVDAVDNFSSATGIPTFFISFIALPMATNSSEAVTAIIFASRKKQRTASLTFSELYGAVTMNNLLCLSVFLALVYVRGLTWDFSAEVLVILIVCIVMGAFASFRTIFPLWTTSIAFMLYPFSLALVYVLDYVFGWS 576
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8BPN7 ((uncharacterized protein LOC104613162 {ECO:0000313|RefSeq:XP_010279178.1}))
HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 347/577 (60.14%), Postives = 420/577 (72.79%), Query Frame = 0
Match: A0A1U8BPN7 ((uncharacterized protein LOC104613162 {ECO:0000313|RefSeq:XP_010279178.1}))
HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 347/577 (60.14%), Postives = 420/577 (72.79%), Query Frame = 0
Query: 1 MADKQSLTLAFSLILLLSLSS---ARLLPNTTAVDLISDGSTQSQ---PLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKH------------KHVISGVLK-----------------------HLKMRALGRLLN----ERGEPNREDTA-----------------------------------------GGETIKHLTRYHEQTKREHFLLGDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 491
MA K+ L F I++L+++ +R + ++ DL+SDG +Q PLL + ++ CE TYGFLPCTTTV+GNLFLI+ YGYLMFLAA+YLS GSELLL ILGPG++GGLFLP+LGALPDAMLILVSG+SG+ ETAQ QV VGMGLLAGSTVMLLT++WG+CVVVGKCDIE+S+A+D +DT+ LSL GSG++ DIWTSYAA IM +S++PF++VQLPQ+LHS+SGRHLAVLIA ++SV+LLISYCLYQVFQPWIQ+RR++YAKH KH + +LK HL + L L+ E + NR+D A G T++++ +H+Q ++EH LLGD SD+V+EGVENP+WT+IKAVL+LLLG IAAAFADPLVDAV NFSSATSIPSFFISFIALP ATNSSEAVSA+IFASRKK ++ASLTFSE+YGA TMNNILCLSVFLALVYVR L WDFS+EVLVILIVCIVMG S RTTFPLWT S+AF+LYPFSL LVYVLDY+FGWS
Sbjct: 1 MAKKRFLYSVFVFIVILAIAGVGWSRFITESSHSDLVSDGINNAQTKSPLLLIKRLRASESCENTYGFLPCTTTVVGNLFLIIVYGYLMFLAASYLSDGSELLLAILGPGLIGGLFLPILGALPDAMLILVSGLSGSKETAQSQVLVGMGLLAGSTVMLLTLLWGSCVVVGKCDIEESIAVDSQDTKRLSLVGSGISTDIWTSYAARIMVISVIPFIIVQLPQILHSSSGRHLAVLIAFIVSVALLISYCLYQVFQPWIQQRRLEYAKHKHVISGILKYLKKHSLGKLLKDDGEPNEDIIKRLFKQIDADKDGHLSIPELRALIIGIELEEIDLNRDDAAEKLMKDFDQSNDNLLNEEEFVEGIKKWLYEAKRSTDYVPFSGSHTLRYIDGFHKQARQEHILLGDASDDVIEGVENPKWTSIKAVLMLLLGTAIAAAFADPLVDAVQNFSSATSIPSFFISFIALPLATNSSEAVSALIFASRKKKKTASLTFSEIYGAATMNNILCLSVFLALVYVRHLTWDFSAEVLVILIVCIVMGLFASFRTTFPLWTCSVAFVLYPFSLVLVYVLDYVFGWS 577
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UE47 ((uncharacterized protein LOC105176958 {ECO:0000313|RefSeq:XP_011098256.1}))
HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 369/569 (64.85%), Postives = 424/569 (74.52%), Query Frame = 0
Match: A0A6I9UE47 ((uncharacterized protein LOC105176958 {ECO:0000313|RefSeq:XP_011098256.1}))
HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 369/569 (64.85%), Postives = 424/569 (74.52%), Query Frame = 0
Query: 4 KQSLTLAFSLILLLSLSSARLLPNTTAVDLISD----GSTQSQPLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYA--KH------KHVI------------------------------SGVLKHLKMRAL--GRLLNERG--------------EPNR-----------------EDTAGGETIKH------LTRYHEQTKREHFLLGDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 491
K +L L F ++LL L+ AR + + + DLISD G+++ PLLRL A E CEETYGF+PCT+T LGNLFLIL YGYLMFLAATYLS GSELLLEILGPGIVGGLFLPVLGALPDAMLILVSG+SG+ ETAQ QVSVGMGLLAGSTVMLLT+IWGTC++VGKCDIE+SVA+D KDT+ SL GSG++ DIWTSYA++IMA+S++PF++VQLPQ+LHS SGRHLAVLIAL++S SLLI+YCLYQVFQP +QRRRI YA KH KH+ G L H ++RAL G +E + +R E+ G +T H + +HEQT+REH LLGDQ DE EGV+NP+WT++KAVLLLLLG VIAA FADPLVDAVDNFS+ATSIPSFFISFI LP ATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNN+LCLSVFLALVYVRGLVWDFSSEVLVILIVC+VMG S+RTTFPLWTS +AFLLYPFSLALVYVLDY+FGWS
Sbjct: 6 KPALALVF-ILLLCGLAYARRIRDQS--DLISDDVVVGASKFPPLLRLPAAEEV--CEETYGFMPCTSTALGNLFLILVYGYLMFLAATYLSTGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGLSGSRETAQSQVSVGMGLLAGSTVMLLTLIWGTCIIVGKCDIENSVAVDSKDTKAFSLAGSGISTDIWTSYASIIMAISVIPFIIVQLPQILHSNSGRHLAVLIALIVSASLLIAYCLYQVFQPMVQRRRIAYAKHKHVVAGILKHLKMHAFGKLYGEDGKLNVEVLRKLFRTIDDNKDGYLSHTELRALIVGIRFSESNLDEDDAVVKLMKDLDSSRDSRVDLHEFISTVARWLEEAKGAKTSNHTGSMKFIDDFHEQTRREHDLLGDQGDEAAEGVDNPRWTSVKAVLLLLLGTVIAAVFADPLVDAVDNFSTATSIPSFFISFIVLPLATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNVLCLSVFLALVYVRGLVWDFSSEVLVILIVCVVMGVFASIRTTFPLWTSLLAFLLYPFSLALVYVLDYVFGWS 569
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G3U7 ((Sodium/calcium exchanger family protein / calcium-binding EF hand family protein {ECO:0000313|EMBL:GFZ05461.1}))
HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 367/523 (70.17%), Postives = 412/523 (78.78%), Query Frame = 0
Match: A0A7J0G3U7 ((Sodium/calcium exchanger family protein / calcium-binding EF hand family protein {ECO:0000313|EMBL:GFZ05461.1}))
HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 367/523 (70.17%), Postives = 412/523 (78.78%), Query Frame = 0
Query: 32 DLISDG---STQSQPLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNRE------------------------------------DTAGGETIKHLTRYHEQ------------------------TKREHFLLGDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 491
DL+SDG + PLL SE+ CEETYGFLPCTTTVLGNLFLI+ YGYLMFLAATYLS GSELLLEILGPG+VGGLFLPVLGALPDAMLILVSG+SG+ ETAQ QVSVGMGLLAGSTVMLLT+IWGTCVVVGKCDIE SVAI+ KDTRG SLTGSGV+ DIWTSYAA IMA+S++PFLVVQLPQ+++STSGRHLAVLIAL++S S+LISYCLYQ+FQPWIQRR++ +AKHKHVISG+L+HL+MRALGRLL + G PN E D E I + ++ E+ TKREH LLGD SDEVVEGVENP+ TTIKAVLLLLLG +IAAAFADPLVDAVDNFS ATSIP+FFISFIALPFATNSSEAVSAIIF++RK+ RSASLTFSELYGAVTMNN+LCLSVFLALVY+RGL WDFS+EVLVI+IV +VMGA S RTTFPLWT+ +AFLLYPFSLALVYVLDY+ GWS
Sbjct: 37 DLVSDGVHGGYDAPPLLLRLRASES--CEETYGFLPCTTTVLGNLFLIIVYGYLMFLAATYLSNGSELLLEILGPGVVGGLFLPVLGALPDAMLILVSGLSGSTETAQSQVSVGMGLLAGSTVMLLTIIWGTCVVVGKCDIEHSVAINEKDTRGCSLTGSGVSTDIWTSYAARIMAISVIPFLVVQLPQLMNSTSGRHLAVLIALIVSFSMLISYCLYQIFQPWIQRRKLAFAKHKHVISGILRHLRMRALGRLLRDDGTPNTEIIEKLFRTVDGNSDGYISTAELKALIIGIRFDEIDLDEDDAEFICGIEKWLEEARRSGPPLKDGAGTIKYLDDFHRNTKREHDLLGDASDEVVEGVENPKTTTIKAVLLLLLGTLIAAAFADPLVDAVDNFSDATSIPTFFISFIALPFATNSSEAVSAIIFSTRKRQRSASLTFSELYGAVTMNNVLCLSVFLALVYIRGLTWDFSAEVLVIVIVSVVMGAFASFRTTFPLWTAILAFLLYPFSLALVYVLDYVLGWS 557
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J8Z260 (EF-hand domain-containing protein {ECO:0000259|PROSITE:PS50222})
HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 356/566 (62.90%), Postives = 409/566 (72.26%), Query Frame = 0
Match: A0A7J8Z260 (EF-hand domain-containing protein {ECO:0000259|PROSITE:PS50222})
HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 356/566 (62.90%), Postives = 409/566 (72.26%), Query Frame = 0
Query: 20 SSARLL---PNTTAVDLISDG--STQSQPLLRLYATSEAKE-CEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTG-----------SGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPN-----------REDTAGGETIKHLT------RYHE----------------QTKREHFLLGDQSDEVVEG--------------------------------------------VENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 491
S AR + P+ T L+SDG + ++ P L L A+E CE++YGFLPCTTTVLGN+FLI+ YGYLM+LAATYLS GSELLLEILGPG+VGGLFLP+LGALPDAMLILVSG+SGT ETAQ QVSVGMGLLAGSTVMLLTVIWG+C++VG+CD+ DSVAIDG +T+G +L G SGV+ DIWT YAA IMA+S++PFL+VQLPQ L STSGRHLAVLIAL+IS+ +LISYC+YQVFQPWIQRRRI +AKHKHVISG+L+HLK ALGRLL + GEP+ E+ GG + L R+ E T R++ + Q DE VEG VENP+W +IKAVL+LLLG +IAAAFADPLVDAVDNFS ATSIPSFFISFIALP ATNSSEAVSAIIFASRKK R+ASLTFSELYGAVTMNN+LCLSVFLALVYVRGL WDFSSEVLVILIVCIVMGA S RTTFPLWT S+A++LYPFSL LVYVLDY+ GWS
Sbjct: 21 SHARFITGRPSPTG--LVSDGISTVKNLPYLLLKPPVSAEESCEQSYGFLPCTTTVLGNMFLIIVYGYLMYLAATYLSYGSELLLEILGPGLVGGLFLPMLGALPDAMLILVSGLSGTAETAQSQVSVGMGLLAGSTVMLLTVIWGSCIIVGRCDLHDSVAIDGTNTKGFNLKGAQLCSTLFLAKSGVSTDIWTCYAARIMAISVIPFLIVQLPQALSSTSGRHLAVLIALIISLLMLISYCVYQVFQPWIQRRRIAFAKHKHVISGILRHLKKHALGRLLTDDGEPDTEIIRKLFETIDENHDGGLSPSELRALIIGIRFEEIDLDQDDAVSKVIAEFDTSRDNLV---QEDEFVEGIMKWINEAKQTGGAYLESNAGTFKFIDHFHQARSEEQSDEVVENVENPRWISIKAVLMLLLGTLIAAAFADPLVDAVDNFSEATSIPSFFISFIALPLATNSSEAVSAIIFASRKKQRTASLTFSELYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILIVCIVMGAFASFRTTFPLWTCSVAYILYPFSLGLVYVLDYVLGWS 581
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438E5K6 ((Sodium/calcium exchanger NCL {ECO:0000313|EMBL:RVW42959.1}))
HSP 1 Score: 657.907 bits (1696), Expect = 0.000e+0
Identity = 355/559 (63.51%), Postives = 411/559 (73.52%), Query Frame = 0
Match: A0A438E5K6 ((Sodium/calcium exchanger NCL {ECO:0000313|EMBL:RVW42959.1}))
HSP 1 Score: 657.907 bits (1696), Expect = 0.000e+0
Identity = 355/559 (63.51%), Postives = 411/559 (73.52%), Query Frame = 0
Query: 21 SARLLPN-TTAVDLISDGSTQSQP-----LLRLY-ATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNRE-------------------------------------------------DTAG------GETIKHLTRYHEQTKR-------------------------EHFLL-GDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 491
R++ N T++ L+SDG + LLR + A S + C++TYGF+PCTTT +GNLFLIL YGYLMFLAATYLS+GSELLLEILGPG+VGGLFLP+LGALPDAMLILVSG+SG+ ETAQ QVSVGMGLLAGSTVMLLT+IWGTCV+VGKCD++DSVA D +DT+G SLTGSGV+ DIWTSYAA+IM +S++PF++VQLPQVLHSTS R LAVLIAL++S+ LLI+YCLYQVF PWIQ+RR+ YAKHKHVISG+LKHL+ ALGRLL E GEPN E DT+ GE +K ++R+ + KR EH L GDQSDEVVE VENP+W T KA+++LLLG +IAA FADPLVDAVDNFS AT IP+FFISFIALP ATNSSEAVSAIIFASRKK R+ SLTFSELYGAVTMNN+LCLSVFLALVYVRGL WDFSSEVLVI+IVC+VMG S RTTFPLWTS +A LLYPFSLALVYVLDY+ GWS
Sbjct: 22 DGRVISNRTSSTGLVSDGVHDHRDGSPYLLLRSFSAVSASDSCDQTYGFMPCTTTTVGNLFLILVYGYLMFLAATYLSSGSELLLEILGPGLVGGLFLPILGALPDAMLILVSGLSGSTETAQSQVSVGMGLLAGSTVMLLTIIWGTCVIVGKCDLQDSVAKDLQDTKGFSLTGSGVSTDIWTSYAAIIMVISVIPFIIVQLPQVLHSTSARRLAVLIALIVSLILLITYCLYQVFVPWIQKRRLAYAKHKHVISGLLKHLRKHALGRLLTEEGEPNEEIIRKLFHTIDENDDGNLSKAELRALIVGIQFEEIDLDKNEAVDKVMSDFDTSNDQFVDEGEFVKGISRWLMEAKRYGGSGPDAGPNSSSVLDAFHRGTKREHNRLGGDQSDEVVEAVENPKWITFKAIMMLLLGTLIAAVFADPLVDAVDNFSDATGIPTFFISFIALPLATNSSEAVSAIIFASRKKKRTTSLTFSELYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVIVIVCVVMGVFASFRTTFPLWTSFVALLLYPFSLALVYVLDYVLGWS 580
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6VEX4 ((Vacuolar calcium ion transporter {ECO:0000313|EMBL:KAA3467709.1}))
HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 355/574 (61.85%), Postives = 410/574 (71.43%), Query Frame = 0
Match: A0A5B6VEX4 ((Vacuolar calcium ion transporter {ECO:0000313|EMBL:KAA3467709.1}))
HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 355/574 (61.85%), Postives = 410/574 (71.43%), Query Frame = 0
Query: 20 SSARLL---PNTTAVDLISDG--STQSQPLLRLYATSEAKE-CEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTG-----------SGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPN-----------REDTAGGETIKHLT------RYHE----------------QTKREHFLLGDQSDEVVEGV-------------------------------------------------EN---PQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 491
S AR + P+ T L+SDG + ++ P L L A+E CE++YGFLPCTTTVLGN+FLI+ YGYLM+LAATYLS GSELLLEILGPGIVGGLFLP+LGALPDAMLILVSG+SGT ETAQ QVSVGMGLLAGSTVMLLTVIWG+C++VG+CD+ DSVAIDG +T+G +L G SGV+ DIWT YAA IMA+S++PFL+VQLPQ L STSGRHLAVLIAL+IS+ +L+SYC+YQVFQPWIQRRR+ +AKHKHVISG+L+HLK ALGRLL + GEP+ E+ GG + L R+ E T R++ + Q DE VEG+ EN P+W +IKAVL+LLLG +IAAAFADPLVDAVDNFS ATSIPSFFISFIALP ATNSSEAVSAIIFASRKK R+ASLTFSELYGAVTMNN+LCLSVFLALVYVRGL WDFSSEVLVILIVCIVMGA S RTTFPLWT S+A++LYPFSL LVYVLDY+FGWS
Sbjct: 21 SHARFITGRPSPTG--LVSDGISTVKNLPYLLLKPPVSAEESCEQSYGFLPCTTTVLGNIFLIIVYGYLMYLAATYLSYGSELLLEILGPGIVGGLFLPMLGALPDAMLILVSGLSGTAETAQSQVSVGMGLLAGSTVMLLTVIWGSCIIVGRCDLHDSVAIDGTNTKGFNLKGAQLCSTLFLAKSGVSTDIWTCYAARIMAISVIPFLIVQLPQALSSTSGRHLAVLIALIISLLMLVSYCVYQVFQPWIQRRRLAFAKHKHVISGILRHLKKHALGRLLTDDGEPDTEIIRKLFETIDENHDGGLSPSELRALIIGIRFEEIDLDQDDAVSKVIADFDTSRDNLV---QEDEFVEGITKWINEAKQTGGSYLESNAGTFKFIDHFHQQTKREHALLGSEEQSDEVVENVENPRWISIKAVLMLLLGTLIAAAFADPLVDAVDNFSEATSIPSFFISFIALPLATNSSEAVSAIIFASRKKQRTASLTFSELYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILIVCIVMGAFASFRTTFPLWTCSVAYILYPFSLGLVYVLDYVFGWS 589
BLAST of DCAR_019585 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3U5I6 ((sodium/calcium exchanger NCL {ECO:0000313|RefSeq:XP_014501261.1}))
HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 355/576 (61.63%), Postives = 423/576 (73.44%), Query Frame = 0
Match: A0A1S3U5I6 ((sodium/calcium exchanger NCL {ECO:0000313|RefSeq:XP_014501261.1}))
HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 355/576 (61.63%), Postives = 423/576 (73.44%), Query Frame = 0
Query: 1 MADKQSLTLAFSLILLLSLSSARLLPNTTAVDLISDGSTQS--QPLLRL-YATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNRE-------------------------------------------------DTAG------GETIKHLTRYHEQTKR-------------------------EHFLL--GDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 491
++ +S+ L +++L + AR D +SDG + + + LLRL A + CE+TYGFLPCTTTV+GNLFLIL YG+LMF AAT+LS GSELLLEILGPGIVGGLFLP+LGALPDAMLILVSG+SG+ ETAQ QVSVGMGLLAGSTV+LLT+IWGTCV+VGKCDIE+S+AID +DTRG LTGSGV+ DIWTSYAA IM +S+LPF++VQLPQ+L+STSGRHLAVLIAL++S+ LL++YCLYQ+FQPWIQ+R+++Y KHKHVI G L+HLK RALGRLL + GEP++E DT+G GE + ++R+ ++ +R EH LL GDQS+E EG+EN +WT+IKAVLLLLLG +IAAAFADPLVDAVDNFS ATSIP+FFISFIALP ATNSSEAVSAIIFASR K ++ASLTFSELYGAVTMNN+LCLSVFLALVYVRGL WDFSSEVLVIL+VCIV+G S RT FPLWTS +A LLYPFSLALVYVLDY+FGWS
Sbjct: 7 VSSHRSIFLILWIVILCGHAHARFFSR----DPLSDGVSANTWEGLLRLPSAITAESSCEQTYGFLPCTTTVIGNLFLILVYGFLMFKAATFLSGGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIENSIAIDSRDTRGFHLTGSGVSTDIWTSYAARIMVISVLPFVIVQLPQILNSTSGRHLAVLIALIVSLCLLVAYCLYQIFQPWIQKRKLEYIKHKHVILGFLRHLKERALGRLLKDNGEPDKEVIEKLFSTIDEDQDGSLTHSELRALVIGIQFEEIDLDHDDAVKRIMNDFDTSGNQLVDRGEFVNGVSRWLQRAQRAPVASGDAGPHTKKFLSDFHTETKREHDLLDVGDQSNEEAEGIENAKWTSIKAVLLLLLGTIIAAAFADPLVDAVDNFSEATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSELYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILVVCIVVGVFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS 578
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7CAF7 | E-Value: 0.000e+0, PID: 66.55 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5730... [more] |
| A0A1R3JC99 | E-Value: 0.000e+0, PID: 69.46 | (Sodium/calcium exchanger membrane region {ECO:000... [more] |
| A0A5B7A3N4 | E-Value: 0.000e+0, PID: 64.24 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5025... [more] |
| A0A1U8BPN7 | E-Value: 0.000e+0, PID: 60.14 | (uncharacterized protein LOC104613162 {ECO:0000313... [more] |
| A0A6I9UE47 | E-Value: 0.000e+0, PID: 64.85 | (uncharacterized protein LOC105176958 {ECO:0000313... [more] |
| A0A7J0G3U7 | E-Value: 0.000e+0, PID: 70.17 | (Sodium/calcium exchanger family protein / calcium... [more] |
| A0A7J8Z260 | E-Value: 0.000e+0, PID: 62.90 | EF-hand domain-containing protein {ECO:0000259|PRO... [more] |
| A0A438E5K6 | E-Value: 0.000e+0, PID: 63.51 | (Sodium/calcium exchanger NCL {ECO:0000313|EMBL:RV... [more] |
| A0A5B6VEX4 | E-Value: 0.000e+0, PID: 61.85 | (Vacuolar calcium ion transporter {ECO:0000313|EMB... [more] |
| A0A1S3U5I6 | E-Value: 0.000e+0, PID: 61.63 | (sodium/calcium exchanger NCL {ECO:0000313|RefSeq:... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |