MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEE
NLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLP
SVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSN
LWKGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYED
FNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQE
AYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQTSNLSFSG
LTGDSSTGEYQDCGASPMLVMGEPPPWCTPESSLASSTRSSAVQRYKDKK
KTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF*
| Relationships |
|---|
| The polypeptide, DCAR_019663, derives from mRNA, DCAR_019663. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A6L5B892 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1001563.1}))
HSP 1 Score: 500.36 bits (1287), Expect = 5.019e-175
Identity = 255/396 (64.39%), Postives = 300/396 (75.76%), Query Frame = 0
Query: 1 MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSNLWKGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKG-NGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQTSNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCT--PESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQT 393
MVYC+SDAACLCLSCDRS+HSANALSRRH RTL+CERCNLQPAFVRCVEE+ S CQNCDW H ++ + H+ QAV Y+GCPSA ELS IWSFL+DLPS + STCEQG+GSMSI D + N P S N L I +L+ N S+ WK S+ + D+ QQ+ AK T++KI GA EL E DD +EDFNMDELD NIEKYEELFGVGHNDPQ FN++GID LFEMK GA++ Y+AEGS +G +N+ +P SNA++ADS+ISCKT P+ FARQ SN+SFSG+TG S+ YQDC ASPML+MGEPPPWC+ ES S R+SAVQRYKDKKKTRKF+KRVRY TRKARADVRKR KGRFVKAGDAFDYDPLS++
Sbjct: 14 MVYCQSDAACLCLSCDRSIHSANALSRRHPRTLLCERCNLQPAFVRCVEESSSLCQNCDWMVHVNA---SGHKRQAVKCYSGCPSANELSCIWSFLMDLPSALASTCEQGLGSMSIADDNLTNDKAPSRSINDRGLSINVTDLQNVNSSDGWKSPSMPQLDENLVY--QQSVFAKSTSSKI---GADELELHE-DDLHEDFNMDELDSNIEKYEELFGVGHNDPQQFFNNNGIDGLFEMKEMTGADTISPRPYVAEGSLIGWQNVMKPKGSNASAADSMISCKTNPSGCFARQISNISFSGVTGMSNDINYQDCDASPMLLMGEPPPWCSQGSESPSTSDIRNSAVQRYKDKKKTRKFDKRVRYETRKARADVRKREKGRFVKAGDAFDYDPLSKS 400
Match: A0A5B7A4T9 ((Putative B-box type zinc finger protein with CCT domain isoform 1 {ECO:0000313|EMBL:MPA51135.1}))
HSP 1 Score: 486.108 bits (1250), Expect = 1.992e-169
Identity = 251/399 (62.91%), Postives = 300/399 (75.19%), Query Frame = 0
Query: 1 MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSNLWKGSS-VAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPP--PWCTPESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRS 395
MVYCRSD A LCLSCDR+VHSANAL+RRHSRTL+CERCN QPAF+RC+EE +S CQ CDW HG S T H+ VN Y+GCPSAAELS IWSF+LD PS DSTCEQG+GSMSI D S N NN + + ++K ++S +W GSS + + + K + DQ SA T+ KI +G K EDD +YE+FNMDE+DLNIE YEELFGV N+P+ LF + GIDSLF M +GA+ NCQ A++AEGSS+GL N QPA SNAASADS++S KTEPN F RQ S+LSFSGLTG+SS G+YQDCGAS ML+ GEPP P C PE+ L S+ R+SAV RYK+KK RKFEKRVRYA+RKARADVR+RVKGRFVKAGD++DYDPLSQT+S
Sbjct: 14 MVYCRSDVASLCLSCDRNVHSANALARRHSRTLLCERCNSQPAFIRCIEERISLCQKCDWMGHGHDGSST-HKRLTVNYYSGCPSAAELSTIWSFVLDFPSAGDSTCEQGLGSMSISDNSPRN----CQENNNGPVIVEVNDVKEADRSGIWMGSSSMTQLNIKPHSVDQPVLSANATSPKICCAGTKVTGMCEDDGFYENFNMDEVDLNIENYEELFGVTLNNPEQLFENGGIDSLFGMDMSGADFNCQSAHLAEGSSIGLVNALQPACSNAASADSMMSSKTEPNLCFTRQAHSSLSFSGLTGESSAGDYQDCGASSMLLTGEPPWYPPC-PENHL-SANRNSAVMRYKEKKAARKFEKRVRYASRKARADVRRRVKGRFVKAGDSYDYDPLSQTKS 405
Match: A0A5J5A4Z1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524902.1}))
HSP 1 Score: 486.108 bits (1250), Expect = 2.603e-169
Identity = 259/402 (64.43%), Postives = 301/402 (74.88%), Query Frame = 0
Query: 1 MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANF-GTPMGSNNQ-ADLCIGAGNLKYGNKSNLWKG-SSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGN-GANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCTP-ESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 396
MVYCRSDAACLCLSCDR+VHSANALSRRHSRTL+CE+CN QPAFVRCVEE +S CQNCDW H S+ + H+ VN Y+GCPSAAELS IWSF+LD PS DSTCEQG GSMSI D S N G P +N Q A + + ++ +K +WKG SS+ + + K N Q SA T+ KI + K EDD +YEDF+MDE+DLNIE YEE FGV NDP+ LF +DGIDSLF MK G +SN Q A +AEGSS GL + QPA SN ASADSI+S KTEP RQ S+LSFSGLTG+SS G+YQDCGAS ML+MGE PPWC+P S AS+TRSSAV RYK+KKK RKFEKRVRYA+RKARADVR+RVKGRF+KAGDA+DYDPLSQTRS+
Sbjct: 14 MVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCEKCNSQPAFVRCVEERISLCQNCDWMEHDGSSLVSTHKRLNVNCYSGCPSAAELSTIWSFILDFPSAGDSTCEQGFGSMSISDNSMKNCQGRPENNNGQDAPVVVEVNDVTDMDKLGVWKGSSSMRQLNIKSHNVGQPAVSATATSPKICCARTKVPRIGEDDCFYEDFDMDEVDLNIENYEEFFGVALNDPEQLF-EDGIDSLFGMKDMFGVDSNYQSACVAEGSSNGLVHGLQPACSNPASADSIMSSKTEPKFCLTRQAHSSLSFSGLTGESSAGDYQDCGASSMLLMGE-PPWCSPCPESHASTTRSSAVMRYKEKKKARKFEKRVRYASRKARADVRRRVKGRFIKAGDAYDYDPLSQTRSY 413
Match: A0A6P4A548 ((zinc finger protein CONSTANS-LIKE 9-like {ECO:0000313|RefSeq:XP_015880870.1, ECO:0000313|RefSeq:XP_015880871.1}))
HSP 1 Score: 477.248 bits (1227), Expect = 8.159e-166
Identity = 253/401 (63.09%), Postives = 294/401 (73.32%), Query Frame = 0
Query: 1 MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSNLWK-GSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKG-NGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYF--ARQTSNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCTP--ESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRS 395
MVYCRSDAACLCLSCDR+VHSANALSRRHSRTL+CERCN QPA VRC EE +S CQNCDW HG+S S ++H+ Q +N Y+GCPSAAELS+IWSF+LD PSV +S CEQ +G MSI + S N S N + NK +LW SSV + + DQ SA VT K+ G K EDDD YEDFNMDE+DLN+E YEELFG+ N+ + L + GIDSLF K +GA+SNCQ A AEGSSVGL N QPA SNAASADS++S KTEP F + SNLSFSGLTG+SS G+YQDCGAS ML+MGE PPWC P + +L S++RS AV RYK+KKKTRKFEKRVRYA+RKARADVRKRVKGRFVKAGDA+DYDPL+QTRS
Sbjct: 14 MVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPALVRCSEERVSLCQNCDWMGHGNSTSASSHKRQTINCYSGCPSAAELSSIWSFVLDFPSVGESACEQEMGMMSITENSTENAWD--SSENASGSARVNDVPSMDNKPSLWACSSSVPEHNSAAQVLDQPVGSASVTLPKLCCPGTKGPGLCEDDDLYEDFNMDEMDLNLENYEELFGMALNNSEELLENGGIDSLFGTKDMSGADSNCQGAVAAEGSSVGLVNAMQPACSNAASADSVMSTKTEPILCFNTKQAHSNLSFSGLTGESSAGDYQDCGASSMLLMGE-PPWCPPPCQENLQSASRSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAGDAYDYDPLNQTRS 411
Match: A0A6S7P0R9 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4106822.1}))
HSP 1 Score: 470.7 bits (1210), Expect = 2.121e-163
Identity = 251/403 (62.28%), Postives = 293/403 (72.70%), Query Frame = 0
Query: 1 MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSNLWKGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQTSNLSFSGLTGDSSTGEYQDCGA-SPMLVMGEPPPWC------TPESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 396
MVYCRSDAA LCLSCDR VHSANALS+RHSRTLVC+RCN QPA VRCVEE +S CQNCDW H N T H Q +N Y+GCPSA ELS+IWSF+ +LPSV+DSTCEQGIGSMSI D S P SNN D + N+SNLW GSS D K+ N QQ +++KI SG K+ +D+ +Y DFNMDE+DL+IE YEELFGVGHNDP+HLF DGID LF GA SN +Y A+ SS G N QPA SNAASADS++SCKTEPN + RQ SN+SFS LTG+SS GEYQDCGA S M++MGEPP + + +++ A +RS AV RY++KKK RKFEKRVRYATRKARADVRKRVKGRFVKAGDA+DYDP+SQTRS+
Sbjct: 14 MVYCRSDAAYLCLSCDRVVHSANALSKRHSRTLVCDRCNSQPAVVRCVEEKVSLCQNCDWVGH---NGSTTHSRQTLNCYSGCPSAVELSSIWSFMTELPSVIDSTCEQGIGSMSIADNSQG----PSRSNNNQDAVV--------NESNLWTGSSSVCVDDKQENVVQQVGQLNSSSSKISHSGKKDAEACDDEGFYVDFNMDEVDLSIENYEELFGVGHNDPEHLFAKDGIDCLF----GGAESNFHGSYAAKESSTGHGNQVQPACSNAASADSLMSCKTEPNPCYGRQHSNISFSSLTGESSAGEYQDCGASSSMILMGEPPWFIQGGGGGSDQTTAAIGSRSDAVLRYREKKKMRKFEKRVRYATRKARADVRKRVKGRFVKAGDAYDYDPMSQTRSY 397
Match: A0A2J6M4C0 ((Uncharacterized protein {ECO:0000313|EMBL:PLY94339.1}))
HSP 1 Score: 470.7 bits (1210), Expect = 3.334e-163
Identity = 253/415 (60.96%), Postives = 294/415 (70.84%), Query Frame = 0
Query: 1 MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSNLWKGSSVAKADKKRANGDQQ--------NESAKVTATKIGLSGAK--ELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQTSNLSFSGLTGDSSTGEYQDCGA-SPMLVMGEPPPWC--------TPESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 396
MVYCRSDAA LCLSCDR VHSANALS+RHSRTLVC+RCN QPA VRCVEE +S CQNCDW H N T H Q +N Y+GCPSA ELS+IWSF+ +LPSV+DSTCEQGIGSMSI D S P SNN D+ N+SNL GSS D K+ N QQ +++ + K+ SG K E +DD +Y DFNMDE+DL+IE YEELFGVGHNDP+HLF DGID LF GA SNC +Y A+ SS G N QPA SNAASADS++SCKTEPN + RQ SN+SFS LTG+SS GEYQDCGA S ML+MGEPP + + +++ A +RS AV RY++KKK RKFEKRVRYATRKARADVRKRVKGRFVKAGDA+DYDP+SQTRS+
Sbjct: 14 MVYCRSDAAYLCLSCDRVVHSANALSKRHSRTLVCDRCNSQPAVVRCVEEKVSLCQNCDWVGH---NGSTTHSRQTLNCYSGCPSAVELSSIWSFMTELPSVIDSTCEQGIGSMSIADNSQG----PSRSNNNQDV--------VANESNLLTGSSSVHVDDKQENVVQQVGQLNSSSSKNKDLEWIKVSHSGKKDAEACDDDDDGFYVDFNMDEVDLSIENYEELFGVGHNDPEHLFAKDGIDCLF----GGAESNCHGSYAAKESSTGHGNQVQPACSNAASADSLMSCKTEPNPCYGRQHSNISFSSLTGESSAGEYQDCGASSSMLLMGEPPWFIQGGGGGGGSDQTTTAIGSRSDAVLRYREKKKMRKFEKRVRYATRKARADVRKRVKGRFVKAGDAYDYDPMSQTRSY 409
Match: A0A6A4LHF3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9457810.1}) (Fragment))
HSP 1 Score: 461.455 bits (1186), Expect = 9.440e-160
Identity = 241/401 (60.10%), Postives = 293/401 (73.07%), Query Frame = 0
Query: 1 MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGA--GNLKYGNKSNLWKGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCT--PESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 396
MVYCRSDAACLCLSCDR+VHSANALSRRHSRTLVCERCN QPAFVRCVEE +S CQNCDW H +S SG+ H+ Q VN Y+GCPS+AELS IWSF+LD+PSV+DSTCE+G+ +M+I D S P S + D+ + ++K +KS++W GSS A + R G + S+K+ + K + EDD +YED NMD++DL++E YE+LFGV NDP+HLF +DGI SLF +KG A AE SS+G N QPA SN ASADS +S KTEPN FA+Q S LSFSG TG E QDCGAS ML++GE PPWC P++SL S+ RSSAV RYK+KKKTR+FEK+VRYA+RKARADVRKRVKGRFVKAG+A+DYDPLS+T SF
Sbjct: 14 MVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRCVEEKISLCQNCDWSGHPNSTSGSNHKRQTVNCYSGCPSSAELSTIWSFVLDIPSVIDSTCEKGLSTMTIADSSPTKCEGPSQSKDGQDVSVPVEENDVKIVDKSSVWTGSS-AMPQRNRPTGLTNSTSSKMCCPE-----TKAPDLCEDDGFYEDLNMDDVDLDLENYEQLFGVAFNDPEHLFGNDGIGSLFGVKGISA---------AEESSMGKVNAMQPACSNXASADSFMSSKTEPNLGFAKQAHSTLSFSGSTGGDHQ-EIQDCGASSMLLLGE-PPWCPSCPDNSLPSTVRSSAVLRYKEKKKTRQFEKKVRYASRKARADVRKRVKGRFVKAGEAYDYDPLSKTMSF 397
Match: A0A6J1I244 ((zinc finger protein CONSTANS-LIKE 10-like isoform X2 {ECO:0000313|RefSeq:XP_022971006.1, ECO:0000313|RefSeq:XP_022971007.1}))
HSP 1 Score: 461.455 bits (1186), Expect = 1.358e-159
Identity = 240/403 (59.55%), Postives = 298/403 (73.95%), Query Frame = 0
Query: 1 MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNN---QADLCIGAGNLKYGNKSNLWKGSSVAKADKKRAN-GDQQNESAKVTATKIGLSGAKELNF-REDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYF-ARQTSNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCTP--ESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRS 395
MV+CRSD ACLCLSCDR+VHSANALSRRH+RTL+CERC+LQPA VRC++E +S CQNCDW HG+S + ++H+ QA+N Y+GCPSAAELS+IWSF+L++PSV D+ CE+ +G MSI + +P+ +NN + A ++ +KSN+ GSS R + DQ E A + K G K F +DDD Y++F+MDE+DLN+E YEELFG+ N + LF + GIDSLFE KG +S C A AEGSSVG+ QPA SN ASADS++S KTEP F +RQ S +SFSGLTG+SS G+YQDCGAS ML+MGEPPPWC P ESS+ SS R++AV RYK+KKKTRKFEKRVRYATRKARADVR+RVKGRFVK G+A+DYDPLSQTRS
Sbjct: 14 MVFCRSDVACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPASVRCIDERVSLCQNCDWTGHGTSTTSSSHKRQAINCYSGCPSAAELSSIWSFVLEVPSVNDA-CEKEMGLMSISETDLTGASSPLENNNACRRMPESTEARDVCSRDKSNILVGSSSLSDFGSRPHISDQPVELANMAVPKFCCPGTKLPGFCDDDDDIYKEFDMDEMDLNLENYEELFGMSLNHSEDLFENGGIDSLFEAKGFD-DSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQASGVSFSGLTGESSAGDYQDCGASSMLLMGEPPPWCAPGTESSIPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKVGEAYDYDPLSQTRS 414
Match: A0A2R6QEA1 ((Zinc finger protein like {ECO:0000313|EMBL:PSS06477.1}))
HSP 1 Score: 461.455 bits (1186), Expect = 1.500e-159
Identity = 258/403 (64.02%), Postives = 310/403 (76.92%), Query Frame = 0
Query: 1 MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQAD--LCIGAGNLKYGNKSNLW-KGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKG-NGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCTP--ESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 396
MVYCRSDAACLCLSCDR+VHSANALSRRHSRTLVCERCN QPAFVRCVEE +S CQNCDW H S S + H+ Q VN Y+GCPSAAELS IWSF+ D+P+V DSTCE+G+ S+SI D S N G P+ SN+ D + + ++K +KS++W + SS+ + + K N DQQ A T++K+ GAK EDD +YEDFNMDE+DL+IE YEELFGV NDPQ LF +DGI SLF +K +G++ NCQ AY A+ SS + QPA SNAASADS++S KT+PN F RQ SNLSFSGLTG+S+ G++QDCGAS ML+MGE PPW P ESSL S++RSSAV RYK+KKKTRKFEK+VRYA RKARADVRKRVKGRFVKAG+A+DYDPLS+ RSF
Sbjct: 14 MVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRCVEEKVSLCQNCDWLGHAGSTSASTHKRQTVNCYSGCPSAAELSTIWSFVSDIPAVTDSTCEKGLSSISIRDNSLTNCGGPLQSNDGQDASVLVEENDIKNVDKSSVWTESSSLPQLNTKPQNVDQQMGLANSTSSKMCCPGAKAPGQHEDDGFYEDFNMDEIDLDIENYEELFGVAFNDPQQLFGNDGIGSLFGVKNMSGSDLNCQSAYAAQDSS-----MMQPACSNAASADSMMSSKTDPNLCFGRQAHSNLSFSGLTGESNGGDFQDCGASSMLLMGE-PPWGPPCAESSLPSTSRSSAVMRYKEKKKTRKFEKKVRYAARKARADVRKRVKGRFVKAGEAYDYDPLSKRRSF 410
Match: A0A834GR93 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7140380.1}))
HSP 1 Score: 459.914 bits (1182), Expect = 3.038e-159
Identity = 239/401 (59.60%), Postives = 292/401 (72.82%), Query Frame = 0
Query: 1 MVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIG--AGNLKYGNKSNLWKGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCT--PESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 396
MVYCRSDAACLCLSCDR+VHSANALSRRHSRTLVCERCNLQPAF+RCVEE +S CQNCDW H +S SG+ H+ Q VN Y+GCPS+AELS IWSF+LD+PSV+DSTCE+G+ +M+I D S P + + D+ + ++K +KS++W GSS + A E T++K+ K + EDD +YED NMD++DL++E YE+LFGV NDP+HLF +DGI SLF +KG A AE SS+G N QPA SN ASADS +S KTEPN FA+Q S LSFSG TG E QDCGAS ML++GE PPWC P++SL S+ RSSAV RYK+KKKTR+FEK+VRYA+RKARADVRKRVKGRFVKAG+A+DYDPLS+T SF
Sbjct: 14 MVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNLQPAFIRCVEEKISLCQNCDWLGHPNSTSGSNHKRQTVNCYSGCPSSAELSTIWSFVLDIPSVIDSTCEKGLSTMTITDSSPTKCEGPSQNKDGQDVSVPVEVNDVKIVDKSSVWTGSSAMPQWNRPA------ELTNSTSSKMCSPETKAPDLCEDDGFYEDLNMDDVDLDLENYEQLFGVAFNDPEHLFGNDGIGSLFGVKGISA---------AEESSMGKVNAMQPACSNGASADSFMSSKTEPNLGFAKQAHSTLSFSGSTGGDHQ-EIQDCGASSMLLLGE-PPWCPPCPDNSLPSTIRSSAVLRYKEKKKTRQFEKKVRYASRKARADVRKRVKGRFVKAGEAYDYDPLSKTMSF 397
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5B892 | E-Value: 5.019e-175, PID: 64.39 | (Uncharacterized protein {ECO:0000313|EMBL:KAF1001... [more] |
| A0A5B7A4T9 | E-Value: 1.992e-169, PID: 62.91 | (Putative B-box type zinc finger protein with CCT ... [more] |
| A0A5J5A4Z1 | E-Value: 2.603e-169, PID: 64.43 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more] |
| A0A6P4A548 | E-Value: 8.159e-166, PID: 63.09 | (zinc finger protein CONSTANS-LIKE 9-like {ECO:000... [more] |
| A0A6S7P0R9 | E-Value: 2.121e-163, PID: 62.28 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4106... [more] |
| A0A2J6M4C0 | E-Value: 3.334e-163, PID: 60.96 | (Uncharacterized protein {ECO:0000313|EMBL:PLY9433... [more] |
| A0A6A4LHF3 | E-Value: 9.440e-160, PID: 60.10 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9457... [more] |
| A0A6J1I244 | E-Value: 1.358e-159, PID: 59.55 | (zinc finger protein CONSTANS-LIKE 10-like isoform... [more] |
| A0A2R6QEA1 | E-Value: 1.500e-159, PID: 64.02 | (Zinc finger protein like {ECO:0000313|EMBL:PSS064... [more] |
| A0A834GR93 | E-Value: 3.038e-159, PID: 59.60 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7140... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |