Resource Type:
Polypeptide
Name:
DCAR_018616
Identifier:
DCAR_018616.mRNA-protein
Sequence:
MSSRRPPWLLQRRFITTNTHTKPTSNPTHNPKWCVKQVSKSNFSETLENI
KDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLF
QFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMAN
EGFDFNACINDGISYLSRAQELIARNRRGNPVISNLEQSSSPHSVADSLF
LGRIQSRVKSWLKACKESKTGSEDALIRSLRKLMVGSEEYGSRPCLRIDV
CSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFE
KEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGP
LPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFF
APIDAEIPQKVEADESKSHGYDVLRISQLFAKICSVLKISSETDKHSSSA
LKGYANIFNPYSASSDNHMEEDVRLSTDHPQKISTENIVFVWGFTLGTSA
KMLRNQLLTSSEVLSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGN
NCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHT
EDSQKESTEVYWRNSDLINLDEL*
Sequence Length:
624
Sequence Checksum:
501c7d3717c042c31845b5bd7c91344b
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_018616, derives from mRNA, DCAR_018616. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B6L9 ((Putative poly(A)-specific ribonuclease PARN-like {ECO:0000313|EMBL:MPA64660.1}) (3.1.13.4 {ECO:0000313|EMBL:MPA64660.1}))
HSP 1 Score: 790.801 bits (2041), Expect = 0.000e+0
Identity = 384/617 (62.24%), Postives = 482/617 (78.12%), Query Frame = 0
Match: A0A5B7B6L9 ((Putative poly(A)-specific ribonuclease PARN-like {ECO:0000313|EMBL:MPA64660.1}) (3.1.13.4 {ECO:0000313|EMBL:MPA64660.1}))
HSP 1 Score: 790.801 bits (2041), Expect = 0.000e+0
Identity = 384/617 (62.24%), Postives = 482/617 (78.12%), Query Frame = 0
Query: 9 LLQRRFITTNTHTKPTSNPTHNPKWCVKQVSKSNFSETLENIKDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLFQFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMANEGFDFNACINDGISYLSRAQELIARNRRGNPVISN-LEQSSSPHSVADSLFLGRIQSRVKSWLKACKESKTGSEDALIRSLRKLMVGSEEYGSRPCLRIDVCSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGPLPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFFAPIDAEIPQKVEADESKSHGYDVLRISQLFAKICSVLKISSET----DKHSSSALKGYANIFNPYSASSDNHMEEDVRLSTDHPQKISTENIVFVWGFTLGTSAKMLRNQLLTSSEVLSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGNNCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHTEDSQKESTEVYWRNSDLINL 620
+LQRRF+ + + KP H+ +W +KQV+KSNF+E+LE I + I D++AVSL+KTGS+SAPWHR LP+DT +TAY KAKYAAERFQ+ QFAVCPFSIR SK+IA+PYNFHLFPRD LK+GMP YSF CQSSYL+SMA EGFDFN CI +GISYLSRAQE A++R GN V S + QSSS SVADSLF+ RI+SRV+ W ACK+S T +++ALIRSLRKL++GSEEY SRPCL I+VCSER V LALE+L+EF DD+VP++I AKGGG QAV+VVLT+SKEDK++FE+E Q EE QN+ RGFREVID ISASQKP+VA NSL+DFT IHSKFL PLPPS DEF+ SL + PHVLD++HLM EI PLKK+ ++ A S++KRRFF PID EIPQ+ EA+ES+ HG++VLRISQLFAK+CS+LK++ E H SAL+GYANIFNP S SS + ++ DV + D +K+ + ++VF+WGF G SA+ML+NQL S EV S+EFDV+++DKSCA++ F P + FLEAM+SGG +C+ L +ISEGLRAA Y+ Y +VC LGLW+ LADSLDKAL D D +E KE +E+YW +INL
Sbjct: 1 MLQRRFLCSKVYKKP-----HHHQWTIKQVTKSNFTESLEEITNHIHDCDFVAVSLQKTGSYSAPWHRVLPVDTHETAYFKAKYAAERFQVLQFAVCPFSIRASKVIAHPYNFHLFPRDELKIGMPSYSFSCQSSYLSSMAREGFDFNVCIYNGISYLSRAQESAAKDRIGNAVTSTYVVQSSSTLSVADSLFVERIKSRVRHWRNACKDSTTRTDEALIRSLRKLVLGSEEYESRPCLSIEVCSERQVHLALEMLREFYDDLVPLLIPAKGGGTQAVRVVLTNSKEDKNLFERELQHMEEKQNRRARGFREVIDSISASQKPVVAHNSLDDFTFIHSKFLTPLPPSKDEFKCSLRMVFPHVLDVNHLMKEIGPLKKVTNLPTAISFIKRRFFVPIDLEIPQQAEANESEIHGHNVLRISQLFAKLCSLLKVTPEALEDDSGHLCSALEGYANIFNPCSTSSQDPIDGDVTVWMDDTRKVCSGDLVFLWGFRRGVSARMLKNQLSGSHEVFSEEFDVQLMDKSCAIVIFWNPGLAESFLEAMDSGGISCEPLKEMISEGLRAAGYDIYNKVCRLGLWKADLADSLDKAL-ADTDSLSEAHSKEPSEIYWDTVSMINL 611
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C936 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550537.1}))
HSP 1 Score: 786.178 bits (2029), Expect = 0.000e+0
Identity = 388/626 (61.98%), Postives = 485/626 (77.48%), Query Frame = 0
Match: A0A5J5C936 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550537.1}))
HSP 1 Score: 786.178 bits (2029), Expect = 0.000e+0
Identity = 388/626 (61.98%), Postives = 485/626 (77.48%), Query Frame = 0
Query: 9 LLQRRFITTNTHTKPTSNPTHNPKWCVKQVSKSNFSETLENIKDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLFQFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMANEGFDFNACINDGISYLSRAQELIARNRRGNPVISN-LEQSSSPHSVADSLFLGRIQSRVKSWLKACKESKTGSEDALIRSLRKLMVGSEEYGSRPCLRIDVCSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGPLPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFFAPIDAEIPQKVEADESK----SHGYDVLRISQLFAKICSVLKISSET----DKHSSSALKGYANIFNPYSASSDNHMEEDVRLSTDHPQKISTENIVFVWGFTLGTSAKMLRNQLLTSSEV--LSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGNNCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHTEDSQKESTEVYWRNSDLINLDEL 623
+LQRRF+ + KP H +W +KQV+KSNF+E+LE IK+ I D++AVSL+KTGS+SAPWHR LPIDT +TAY KAKYAAE+FQ+ QFAVCPFSIR SK+IA+PYNFHLFPRD LK GMP YSF CQSSYL+SMA EGFDFN CI +GISYLSRAQE A++R GNPV SN + QSSS SVADS+F+ RI+SRV+ W ACK+S T + ALI SLRKL++GSE YGSRPCL ++VCSE V L LE+L+EF+DD+VP++I AKGGG QAV+VVLTSSKEDK++FE+E Q EE+QN+ VRGFREVID ISASQKP+VA NSLN FT IHSKFL PLP SMDEFR SL L PHVLD++HLM EI PLKK+ ++ A S++KRRFF PID EIP + EA+E + HG +VLRISQLFA++CS+LK++ E + H SAL+GYANIFNP S SS + ++ DV + TD+ +K+S++++VF+WGF G SA+ML+ +L +S EV LS+EFDVR++DKSCA++ F P S FLEAM+SGG +C+ L +ISEG RAA YETYKRVC LGLW+ LADSLDKALE ++E +E+YW + +INLD+L
Sbjct: 1 MLQRRFLCSKVLKKP-----HRHQWTIKQVTKSNFNESLEEIKNHIHDCDFVAVSLRKTGSYSAPWHRVLPIDTTETAYFKAKYAAEKFQVLQFAVCPFSIRTSKVIAHPYNFHLFPRDELKTGMPSYSFSCQSSYLSSMAREGFDFNVCIYNGISYLSRAQESAAKDRIGNPVTSNYVVQSSSTLSVADSVFVERIKSRVRHWRNACKDSTTKTHGALISSLRKLVLGSEVYGSRPCLSVEVCSEHQVHLVLEMLREFSDDLVPLLIPAKGGGTQAVRVVLTSSKEDKNLFERELQHMEEEQNRRVRGFREVIDSISASQKPVVAHNSLNVFTFIHSKFLTPLPSSMDEFRCSLRLVFPHVLDVNHLMKEIDPLKKVTNLPTAISFIKRRFFVPIDLEIPHQAEANEGEINGLKHGRNVLRISQLFARLCSILKVTPEALEDDNGHLCSALEGYANIFNPCSTSSQDLVDVDVTVWTDNKRKVSSKDLVFLWGFRRGVSARMLKKKLGSSHEVFLLSEEFDVRLVDKSCAIVVFWNPGLSDSFLEAMDSGGISCEPLREMISEGTRAACYETYKRVCRLGLWKRNLADSLDKALENTDSLSEAYFKREPSEIYWDSESMINLDDL 621
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P6N0 ((Poly(A)-specific ribonuclease PARN-like {ECO:0000313|EMBL:PSR86300.1}))
HSP 1 Score: 771.155 bits (1990), Expect = 0.000e+0
Identity = 381/623 (61.16%), Postives = 480/623 (77.05%), Query Frame = 0
Match: A0A2R6P6N0 ((Poly(A)-specific ribonuclease PARN-like {ECO:0000313|EMBL:PSR86300.1}))
HSP 1 Score: 771.155 bits (1990), Expect = 0.000e+0
Identity = 381/623 (61.16%), Postives = 480/623 (77.05%), Query Frame = 0
Query: 11 QRRFITTNT-----HTKPTSNPTHNPKWCVKQVSKSNFSETLENIKDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLFQFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMANEGFDFNACINDGISYLSRAQELIARNRRGNPVISN-LEQSSSPHSVADSLFLGRIQSRVKSWLKACKESKTGSEDALIRSLRKLMVGSEEYGSRPCLRIDVCSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGPLPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFFAPIDAEIPQKVEADESKSHGYDVLRISQLFAKICSVLKISSET----DKHSSSALKGYANIFNPYSASSDNHMEEDVRLSTDHPQKISTENIVFVWGFTLGTSAKMLRNQLLTSSEVLSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGNNCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHTEDSQKESTEVYWRNSDLINLDEL 623
QRRF+ T H + ++ +W +KQV+KSNFSE LE IK+ I SD++AVSL++TGSHS+PWHR LPIDT +T+Y KAKYAAERFQ+ QFAVCPFS+R SK+IA+PYNFHLFPRD LK+GMP YSF CQSSYLTSMA EGFDFNACI DGISYLSR QEL +++R N V S + QSSS +SVAD++F+ RI+SRVK W A +S T +EDALI+ LRKL++GSE YGSRPCL IDVCSER VQL LE+L+EF+DD+VP+++ A GGG QAV+VVLTSSKED++ F++E Q E +QNK VRGFREVI+LISASQKP+VA NSLNDFT IHSKFL LP SMDEF+ SL L PH+LD+SHLM EI PLKK+ ++ AA SY+KRRFFAPID EI + +A+E K HGY+VLRIS+LFAK+CS+L+I ET + S L+GYAN+F+P S SS + ++ D+ + TD+ +K+ +++VF+WGF G SA+ML+ L S EV S+EFDVR+LDKSCAV+ F P SS FLEAM+SGG +C+SL +IS+GLRA DY+TY R C LGLWE LAD+LDKAL D D ++ +E +E+ W + +INLD L
Sbjct: 9 QRRFLCTKITNHHRHDHRHDHHHNHRRWPIKQVTKSNFSEALEQIKNHIHGSDFVAVSLQRTGSHSSPWHRVLPIDTVETSYFKAKYAAERFQVLQFAVCPFSLRASKVIAHPYNFHLFPRDELKIGMPSYSFSCQSSYLTSMAREGFDFNACIYDGISYLSRTQELASKDRIENLVPSKYMLQSSSANSVADAVFVERIKSRVKHWRNALNDSSTRTEDALIKCLRKLVLGSEAYGSRPCLSIDVCSERQVQLTLEMLREFSDDLVPLLVPANGGGTQAVRVVLTSSKEDRESFQRELQDLEAEQNKRVRGFREVIELISASQKPVVAHNSLNDFTFIHSKFLSSLPSSMDEFKCSLSLVFPHILDVSHLMKEIGPLKKVTNLPAAISYLKRRFFAPIDMEICHQADANEGKIHGYNVLRISELFAKLCSILRIVPETLEADNNRLPSVLEGYANVFSPCSPSSYDPIDRDISVWTDNTRKVDGKDLVFLWGFGGGMSARMLKKLLRNSHEVFSEEFDVRLLDKSCAVVVFCNPGSSESFLEAMDSGGVSCESLREMISDGLRATDYQTYWRACRLGLWEADLADALDKALADD-DSLSKAHSEEPSEICWNSELMINLDAL 630
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G2I8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7120346.1}))
HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 372/621 (59.90%), Postives = 474/621 (76.33%), Query Frame = 0
Match: A0A834G2I8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7120346.1}))
HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 372/621 (59.90%), Postives = 474/621 (76.33%), Query Frame = 0
Query: 10 LQRRFITTNTHTKPTSNPTHNPKWCVKQVSKSNFSETLENIKDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLFQFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMANEGFDFNACINDGISYLSRAQELIARNRRGNPVISN-LEQSSSPHSVADSLFLGRIQSRVKSWLKACKESKTGSE--DALIRSLRKLMVGSEEYGSRPCLRIDVCSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGPLPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFFAPIDAEIPQKVEADESKSHGYDVLRISQLFAKICSVLKISSET----DKHSSSALKGYANIFNPYSASSDNHMEEDVRLSTDHPQKISTENIVFVWGFTLGTSAKMLRNQLLTSSEVLSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGNNCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHTEDSQKESTEVYWRNSDLINLDEL 623
Q+RF+ T SN +W +KQV+K+NFSE L K I SD++AVSL+KTGS+S+PWHR LP+DT+ TAY KAKYAAERFQ+ QFAVCPFS+R SK+IA+PYNFHLFPRD K+GMP YSF CQSSYLTSMA EGFDFNACI DGISYLSR+QE + R GN V S + QSSS SVAD++F+ RI+SRVK W+ K++ +E DALI+SLRKL++GSE++GSRPCL IDVCSER VQL +E+L++F+DD+VP++ AKGGG QAV+VVLT SKED++ FE+E Q EE+QNK VRGFREVIDLISASQKP+VA NSLNDF+ I+S FL LP SMDEFR+SLHL PH+LD+S+LM EI L+K+ ++ A+ S++K RFFAPID EI + + +E K HG++VLRIS+LFAK+CS+LKI+ ET D H S L+GYAN F P+S +S + ++EDV + TD+P+K+ +++VF+WGF G SAKML L S EV S+EFDVR+LD+SCAV+ F K SS FLEA++SGG C+SL+ +ISEGLRAADY+ Y+R C LGLWE LADSLDKA+ + D ++E E+ W N +INLD+L
Sbjct: 8 FQKRFLCTQISNHHHSN--RRRRWPIKQVNKTNFSEALAEFKTHIHDSDFVAVSLQKTGSYSSPWHRVLPVDTSDTAYFKAKYAAERFQVLQFAVCPFSVRASKVIAHPYNFHLFPRDEFKIGMPSYSFSCQSSYLTSMAREGFDFNACIYDGISYLSRSQESASIARIGNLVPSKCVLQSSSALSVADAVFVERIKSRVKHWINTIKDTGPKNEGTDALIKSLRKLILGSEQHGSRPCLSIDVCSERQVQLVVEMLRDFSDDLVPLLSPAKGGGTQAVRVVLTGSKEDRETFERELQNLEEEQNKRVRGFREVIDLISASQKPVVAHNSLNDFSFIYSNFLSSLPSSMDEFRSSLHLVFPHILDVSYLMKEIGHLRKVTNLPASISFLKGRFFAPIDMEISHQADGNEVKIHGHNVLRISELFAKLCSILKIAPETLKDDDSHLPSVLQGYANTFTPHSTNSQDPVDEDVSIWTDNPRKVECKDLVFLWGFRGGMSAKMLNKLLRDSHEVFSEEFDVRLLDRSCAVVVFLKSGSSETFLEAIDSGGKCCESLTEMISEGLRAADYQIYRRACRLGLWESDLADSLDKAV-AECDSNSEADSTGPLEICWNNDLMINLDDL 625
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4LWP4 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9460851.1}) (Fragment))
HSP 1 Score: 744.962 bits (1922), Expect = 0.000e+0
Identity = 374/624 (59.94%), Postives = 473/624 (75.80%), Query Frame = 0
Match: A0A6A4LWP4 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9460851.1}) (Fragment))
HSP 1 Score: 744.962 bits (1922), Expect = 0.000e+0
Identity = 374/624 (59.94%), Postives = 473/624 (75.80%), Query Frame = 0
Query: 7 PWLLQRRFITTNTHTKPTSNPTHNPKWCVKQVSKSNFSETLENIKDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLFQFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMANEGFDFNACINDGISYLSRAQELIARNRRGNPVISN-LEQSSSPHSVADSLFLGRIQSRVKSWLKACKESKTGSE--DALIRSLRKLMVGSEEYGSRPCLRIDVCSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGPLPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFFAPIDAEIPQKVEADESKSHGYDVLRISQLFAKICSVLKISSET----DKHSSSALKGYANIFNPYSASSDNHMEEDVRLSTDHPQKISTENIVFVWGFTLGTSAKMLRNQLLTSSEVLSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGNNCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHTEDSQKESTEVYWRNSDLINLDEL 623
P QRRF+ T + +W +KQV+K+NFSE L K I SD++AVSL+KTGS+S+PWHR LP+DT TAY KAKYAAERFQ+ QFAVCPFS+R SK+IA+PYNFHLFPRD K+GMP YSF CQSSYLTSMA EGFDFNACI DGISYLSR+QE + R GN V S + QSSS SVAD++F+ RI+SRVK W+ K++ +E DALI+SLRKL++GSE++GSRPCL IDVCSER VQL +E+L++F+DD+VP++ AKGGG QAV+VVLT SKED++ FE+E Q EE+QNK V GFREVIDLISASQKP+VA NSLNDF+ I+S FL LP SMDEFR+SLHL PH+LD+S+LM EI PL+K+ ++ AA S++K RFFAPID EI + + +E K HG++VLRIS+LFAK+CS+LKI+ ET D H S L+GYAN F P+S +S + ++EDV + TD+P+K+ +++VF+WGF G SAKML L S EV S+EFDVR+LD+SCAV+ F K SS FLEA++SGG C+SL +ISEGLRAADY+ Y+R C LGLWE LADSLDKA+ +FD ++E E+ W N +INLD+L
Sbjct: 5 PRTFQRRFLCTQISNQ-------RRRWPIKQVTKTNFSEALAEFKTHIHDSDFVAVSLQKTGSYSSPWHRVLPVDTPDTAYFKAKYAAERFQVLQFAVCPFSVRASKVIAHPYNFHLFPRDEFKIGMPSYSFSCQSSYLTSMAREGFDFNACIYDGISYLSRSQESASIARIGNLVPSKCVLQSSSALSVADAVFVERIKSRVKHWINTIKDTGPKNEGTDALIKSLRKLILGSEQHGSRPCLSIDVCSERQVQLVVEMLRDFSDDLVPLLSPAKGGGTQAVRVVLTGSKEDRETFERELQNLEEEQNKRVHGFREVIDLISASQKPVVAHNSLNDFSFIYSSFLSSLPSSMDEFRSSLHLVFPHILDVSYLMKEIGPLRKVTNLPAAISFLKGRFFAPIDMEISHQADGNEGKIHGHNVLRISELFAKLCSILKIAPETLKDDDSHLPSVLQGYANTFTPHSTNSQDPVDEDVSIWTDNPKKVECKDLVFLWGFRGGMSAKMLNKLLRNSHEVFSEEFDVRLLDRSCAVVVFWKSGSSETFLEAIDSGGKCCESLREMISEGLRAADYQIYRRACRLGLWESDLADSLDKAV-AEFDSNSEADSTGPLEICWNNDLMINLDDL 620
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7FQV8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5930622.1}))
HSP 1 Score: 732.25 bits (1889), Expect = 0.000e+0
Identity = 381/632 (60.28%), Postives = 483/632 (76.42%), Query Frame = 0
Match: A0A7J7FQV8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5930622.1}))
HSP 1 Score: 732.25 bits (1889), Expect = 0.000e+0
Identity = 381/632 (60.28%), Postives = 483/632 (76.42%), Query Frame = 0
Query: 5 RPPWLLQRRFITTNTHTKPTSNPTHNPKWCVKQVSKSNFSETLENIKDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLFQFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMANEGFDFNACINDGISYLSRAQELIARNRRGNPVISN-LEQSSSPHSVADSLFLGRIQSRVKSWLKACKESKTGSEDALIRSLRKLMVGSEEYGSRPCLRIDVCSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGPLPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFFAPIDAEIPQK-------VEADESKSHGYDVLRISQLFAKICSVLKISSET----DKHSSSALKGYANIFNPYSASSDNH-MEEDVRLSTDHPQKISTENIVFVWGFTLGTSAKMLRNQLLTSSEVLSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGNNCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHTEDSQKESTEVYWRNSDLINLDEL 623
RPP +LQRRF++T T T T+N H +W VKQV+K+NFSE L+ IK+ + SD++AVSL+KTGS S+PWHR LPIDTA TAY KAKYAAERFQ+ QFAVCPFSIR SK+IA+PYNFHLFPRD LK+GMP YSF CQSSYLTSMA EGFDFNACI +GISYLSRAQE +++R GNPV S + QSSS SVAD++F+ RI+SRV+ W A K++ T +E+ALI+SLRKL++GSEEYGSRPCL IDVCSER VQLALE+L++F++D+VP++I KGG QAV+VVLTSSKEDK+ FE+E Q E++QNK VRGFREVIDLIS + FT I+SKFL LP SMDEFR S+ L PH+LD++HLM EI +KK+ ++ AA SY+KRRFFAPID EI + +A ESK HG+DVLRIS+LFAK+CS+LKI+ T + H S L+ Y NIFNP S SS +H ++EDV + TD+ +K+ ++++VF+WGF G SA+ L+ L S +V S+EFD+R+LDKSCAV+AF P S FLEAM+SGG +C+SL +ISEGLRAA Y+TY+R C LG+ E LADSL+KAL D D +E +ES+E+YW + +INLD+L
Sbjct: 4 RPP-MLQRRFLSTATATTTTTN--HRRRWPVKQVTKANFSEALDQIKNHLGDSDFVAVSLQKTGSFSSPWHRVLPIDTADTAYFKAKYAAERFQVLQFAVCPFSIRASKVIAHPYNFHLFPRDELKIGMPSYSFSCQSSYLTSMAREGFDFNACIYNGISYLSRAQESASKDRIGNPVPSKYVIQSSSALSVADAVFVERIKSRVRHWRNAFKDTSTRAEEALIKSLRKLILGSEEYGSRPCLSIDVCSERQVQLALEMLRDFSEDLVPLLIPTKGGETQAVRVVLTSSKEDKETFERELQNLEDEQNKRVRGFREVIDLISTFSETCY-------FTFIYSKFLSSLPSSMDEFRCSVRLVFPHILDVNHLMKEIGLMKKVTNLPAAISYLKRRFFAPIDMEISHQGKSLLHTYDASESKIHGHDVLRISELFAKLCSILKIAPVTHEDENGHLPSVLEDYTNIFNPCSTSSQDHTIDEDVSVWTDNRRKVDSKDLVFLWGFRGGMSARTLKKLLHDSHDVFSEEFDIRLLDKSCAVVAFWNPGLSESFLEAMDSGGISCESLGEMISEGLRAATYQTYRRACRLGILEADLADSLEKAL-GDADSLSEAHSEESSEIYWDSDLMINLDDL 624
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UTX0 ((Uncharacterized protein {ECO:0000313|EMBL:CDP11722.1}))
HSP 1 Score: 731.48 bits (1887), Expect = 0.000e+0
Identity = 356/629 (56.60%), Postives = 469/629 (74.56%), Query Frame = 0
Match: A0A068UTX0 ((Uncharacterized protein {ECO:0000313|EMBL:CDP11722.1}))
HSP 1 Score: 731.48 bits (1887), Expect = 0.000e+0
Identity = 356/629 (56.60%), Postives = 469/629 (74.56%), Query Frame = 0
Query: 9 LLQRRFITTNTHTKPTSNPTH-------NPKWCVKQVSKSNFSETLENIKDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLFQFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMANEGFDFNACINDGISYLSRAQELIARNRRGNPVI-SNLEQSSSP--HSVADSLFLGRIQSRVKSWLKACKESKTGSEDALIRSLRKLMVGSEEYGSRPCLRIDVCSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGPLPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFFAPIDAEIPQKVEADESKSHGYDVLRISQLFAKICSVLKISSETDKH----SSSALKGYANIFNPYSASSDNHMEEDVRLSTDHPQKISTENIVFVWGFTLGTSAKMLRNQLLTSSEVLSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGNNCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHTEDSQKESTEVYWRNSDLINLDEL 623
LLQRR + T K + +PTH N KW +KQV+KSNF+ETLE IK I SD+IAVSL+KTG+ S+PW + LP DTA+ AYLKAKYAAERFQ+ QFAVCPFS++ SK+IA+PYNFHLFPRD LK+GMP YSF CQSSYLT+MA EGFDFNACI DGISYLSRAQEL A++R GNP+ S ++ S SP +SVADS+F+ RI+SR+K W + C++S+ +ED LI +LRK++ G E +GSRP L ID+CSER VQL LE L+EF D+VP+++ AKGGG QA++VVLTSSKED+++FEKE Q EE+ N VRGFREV+DLIS SQKP+VA N++N+F IHSKF+ PLP ++DEFR+SL H++D++HLM EI PL K+N++ AA Y+KRRF P+ EIPQ ++ DE + HG DVLRIS+LFAK+C +L+I E+ + SSS L+ YAN+FNP SS + +++DV +ST+ ++IS N+VF+WGF SA+ L++ L S EV S E DVR+ D++CA++ F P + +FL+ M SGG NC+ + ++ISEGLRAA Y TYKRVC L +WE LAD+L+KALE D +S++E + W N +L NLD+L
Sbjct: 2 LLQRRLLCTQV-PKRSIHPTHHQNSNLNNKKWAIKQVTKSNFAETLEEIKTHIFNSDFIAVSLQKTGAFSSPWQKVLPFDTAEVAYLKAKYAAERFQVLQFAVCPFSVKSSKIIAHPYNFHLFPRDELKMGMPSYSFFCQSSYLTAMAQEGFDFNACIYDGISYLSRAQELAAKDRTGNPLPRSYMKPSQSPTVYSVADSMFVDRIKSRIKIWKRTCQDSEKKTEDDLISTLRKIVSGGEVFGSRPSLSIDICSERQVQLILETLQEFT-DLVPLLVPAKGGGSQAIRVVLTSSKEDRNVFEKELQLMEEEHNMQVRGFREVVDLISTSQKPVVAHNAINEFAFIHSKFIAPLPSTVDEFRSSLCSVFSHIVDVNHLMREIGPLNKVNNLPAAILYLKRRFTRPLHMEIPQHIDGDEVRVHGRDVLRISELFAKLCLILRIVPESPEADYSTSSSTLECYANVFNPCFISSSDLLDDDVNISTEKTRRISVANLVFLWGFRGMMSARKLKSLLKGSHEVFSGEIDVRLADRNCAIVVFWAPGFAERFLKVMNSGGTNCEPIKDMISEGLRAACYRTYKRVCELSIWEPSLADALEKALEEASDLPEANSEEELPAICWDNDELTNLDDL 628
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TX62 ((poly(A)-specific ribonuclease PARN-like isoform X1 {ECO:0000313|RefSeq:XP_027082930.1}))
HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0
Identity = 355/629 (56.44%), Postives = 468/629 (74.40%), Query Frame = 0
Match: A0A6P6TX62 ((poly(A)-specific ribonuclease PARN-like isoform X1 {ECO:0000313|RefSeq:XP_027082930.1}))
HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0
Identity = 355/629 (56.44%), Postives = 468/629 (74.40%), Query Frame = 0
Query: 9 LLQRRFITTNTHTKPTSNPTH-------NPKWCVKQVSKSNFSETLENIKDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLFQFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMANEGFDFNACINDGISYLSRAQELIARNRRGNPVI-SNLEQSSSP--HSVADSLFLGRIQSRVKSWLKACKESKTGSEDALIRSLRKLMVGSEEYGSRPCLRIDVCSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGPLPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFFAPIDAEIPQKVEADESKSHGYDVLRISQLFAKICSVLKISSETDKH----SSSALKGYANIFNPYSASSDNHMEEDVRLSTDHPQKISTENIVFVWGFTLGTSAKMLRNQLLTSSEVLSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGNNCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHTEDSQKESTEVYWRNSDLINLDEL 623
LLQRR + T K + +PTH N KW +KQV+KSNF+ETLE IK I SD+IAVSL+KTG+ S+PW + LP DTA+ AYLKAKYAAERFQ+ QFAVCPFS++ SK+IA+PYNFHLFPRD LK+GMP YSF CQSSYLT+MA EGFDFNACI DGISYLSRAQEL A++R GNP+ S ++ S SP +SVADS+F+ RI+SR+K W + C++S+ +ED LI +LRK++ G E +GSRP L ID+CSER VQL LE L+EF D+VP+++ AK GG QA++VVLTSSKED+++FEKE Q EE+ N VRGFREV+DLIS SQKP+VA N++N+F IHSKF+ PLP ++DEFR+SL H++D++HLM EI PL K+N++ AA Y+KRRF P+ EIPQ ++ DE + HG DVLRIS+LFAK+C +L+I E+ + SSS L+ YAN+FNP SS + +++DV +ST+ ++IS N+VF+WGF SA+ L++ L S EV S E DVR+ D++CA++ F P + +FL+ M SGG NC+ + ++ISEGLRAA Y TYKRVC L +WE LAD+L+KALE D +S++E + W N +L NLD+L
Sbjct: 2 LLQRRLLCTQV-PKRSIHPTHHQNSNLNNKKWAIKQVTKSNFAETLEEIKTHIFNSDFIAVSLQKTGAFSSPWQKVLPFDTAEVAYLKAKYAAERFQVLQFAVCPFSVKSSKIIAHPYNFHLFPRDELKMGMPSYSFFCQSSYLTAMAQEGFDFNACIYDGISYLSRAQELAAKDRTGNPLPRSYMKPSQSPTVYSVADSMFVDRIKSRIKIWKRTCQDSEKKTEDDLISTLRKIVSGGEVFGSRPSLSIDICSERQVQLILETLQEFT-DLVPLLVPAKVGGSQAIRVVLTSSKEDRNVFEKELQLMEEEHNMQVRGFREVVDLISTSQKPVVAHNAINEFAFIHSKFIAPLPSTVDEFRSSLCSVFSHIVDVNHLMREIGPLNKVNNLPAAILYLKRRFTRPLHMEIPQHIDGDEVRVHGRDVLRISELFAKLCLILRIVPESPEADYSTSSSTLECYANVFNPCFISSSDLLDDDVNISTEKTRRISVANLVFLWGFRGMMSARKLKSLLKGSHEVFSGEIDVRLADRNCAIVVFWAPGFAERFLKVMNSGGTNCEPIKDMISEGLRAACYRTYKRVCELSIWEPSLADALEKALEEASDLPEANSEEELPAICWDNDELTNLDDL 628
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TQC1 ((poly(A)-specific ribonuclease PARN-like isoform X1 {ECO:0000313|RefSeq:XP_027080678.1}))
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 354/629 (56.28%), Postives = 465/629 (73.93%), Query Frame = 0
Match: A0A6P6TQC1 ((poly(A)-specific ribonuclease PARN-like isoform X1 {ECO:0000313|RefSeq:XP_027080678.1}))
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 354/629 (56.28%), Postives = 465/629 (73.93%), Query Frame = 0
Query: 9 LLQRRFITTNTHTKPTSNPTH-------NPKWCVKQVSKSNFSETLENIKDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLFQFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMANEGFDFNACINDGISYLSRAQELIARNRRGNPVI-SNLEQSSSP--HSVADSLFLGRIQSRVKSWLKACKESKTGSEDALIRSLRKLMVGSEEYGSRPCLRIDVCSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGPLPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFFAPIDAEIPQKVEADESKSHGYDVLRISQLFAKICSVLKISSETDKH----SSSALKGYANIFNPYSASSDNHMEEDVRLSTDHPQKISTENIVFVWGFTLGTSAKMLRNQLLTSSEVLSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGNNCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHTEDSQKESTEVYWRNSDLINLDEL 623
LLQRR + T K + +PTH N KW +KQV+KSNF+E LE IK I SD+IAVSL+KTG+ S+PW + LP DTA+ AYLKAKYAAER+Q+ QFAVCP S++ SK+IA+PYNFHLFPRD LK+GMP YSF CQSSYLT+MA EGFDFNACI DGISYLSRAQEL A++R GNP+ S ++ S SP +SVADS+F+ RI+SR+K W C++S+ +ED LI +LRK++ G E +GSRP L ID+CSER VQL LE+L EF D+VP+++ AKGGG QA++VVLTSS EDK++FEKE Q EE+ N VRGFREV+DLIS SQKP+VA N++N+F IHSKF+ PLP ++DEFR+SL H++D++HLM EI PL K+N++ AA Y+KRRF P+ EIPQ ++ DE + HG DVLRIS+LFAK+C +L+I E+ + SSS L+ YAN+FNP SS + +++DV +ST+ ++IS N+VF+WGF SA+ L++ L S EV S E DVR+ D++CA++ F P + +FLE M SGG NC+ + ++ISEGLRAA Y TYKRVC L +WE LAD+L+KALE D +S++E + W N +L NLD+L
Sbjct: 2 LLQRRLLCTQV-PKRSIHPTHHQNSNLNNKKWAIKQVTKSNFAEALEEIKTHIFNSDFIAVSLQKTGAFSSPWQKVLPFDTAEVAYLKAKYAAERYQVLQFAVCPLSVKSSKIIAHPYNFHLFPRDELKMGMPSYSFFCQSSYLTAMAREGFDFNACIYDGISYLSRAQELAAKDRTGNPLPRSYMKPSQSPTVYSVADSMFVDRIKSRIKIWKSTCQDSEKKTEDDLISTLRKIVSGGEVFGSRPSLSIDICSERQVQLILEMLHEFT-DLVPLLVPAKGGGSQAIRVVLTSSNEDKNVFEKELQLMEEEHNMQVRGFREVVDLISTSQKPVVAHNAINEFAFIHSKFIAPLPSTVDEFRSSLCSVFSHIVDVNHLMREIGPLNKVNNLPAAILYLKRRFTRPLHMEIPQHIDGDEVRVHGRDVLRISELFAKLCLILRIVPESPEADYSTSSSTLECYANVFNPCFISSSDLLDDDVNISTEKTRRISVANLVFLWGFRGMMSARKLKSLLKGSHEVFSGEIDVRLADRNCAIVVFWAPGFAERFLEVMNSGGTNCEPIKDMISEGLRAACYRTYKRVCELSIWEPSLADALEKALEEASDLPEANSEEELPAICWDNDELTNLDDL 628
BLAST of DCAR_018616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4EFS7 ((poly(A)-specific ribonuclease PARN-like {ECO:0000313|RefSeq:XP_018818256.2}))
HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0
Identity = 365/620 (58.87%), Postives = 460/620 (74.19%), Query Frame = 0
Match: A0A2I4EFS7 ((poly(A)-specific ribonuclease PARN-like {ECO:0000313|RefSeq:XP_018818256.2}))
HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0
Identity = 365/620 (58.87%), Postives = 460/620 (74.19%), Query Frame = 0
Query: 7 PWLLQRRFITTNTHTKPTSNPTHNPKWCVKQVSKSNFSETLENIKDQILKSDYIAVSLKKTGSHSAPWHRTLPIDTAQTAYLKAKYAAERFQLFQFAVCPFSIRDSKLIAYPYNFHLFPRDGLKLGMPCYSFMCQSSYLTSMANEGFDFNACINDGISYLSRAQELIARNRRGNPV-ISNLEQSSSPHSVADSLFLGRIQSRVKSWLKACKESKTGSEDALIRSLRKLMVGSEEYGSRPCLRIDVCSERHVQLALEVLKEFADDVVPMVIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQCKEEDQNKLVRGFREVIDLISASQKPLVAQNSLNDFTIIHSKFLGPLPPSMDEFRTSLHLAVPHVLDISHLMDEISPLKKLNSVSAATSYMKRRFFAPIDAEIPQKVEADESKSHGYDVLRISQLFAKICSVLKISS-ETD-KHSSSALKGYANIFNPYSASSDNHMEEDVRLSTDHPQKISTENIVFVWGFTLGTSAKMLRNQLLTSSEVLSDEFDVRILDKSCAVIAFSKPDSSTKFLEAMESGGNNCDSLSNLISEGLRAADYETYKRVCSLGLWEVKLADSLDKALETDFDGHTEDSQKESTEVYWRNSDLINLDEL 623
P+LLQRRF+ T TH K W VKQV+KSNF ETL IK I SD+IAVSL++TGS SAPWHR LP D TAY KAK AAERFQL QFAVCPFSIR SKL+A+PYNFHLFPRD LK+GMP YSF CQ+SYLTSMA EGFDFN CI DGISYLSRAQE AR + NP+ I+++ +SS +VADS+F+ RI+ RVK W K+CK+ T S++ L+RSLRK+++GSEEYGSRPC+ IDVCSER VQL LE+L EF+DD+VP++I AKGG Q V+VVLTSSKED +F+ E Q EE+ NK VRGFREVIDLISASQ+P+V+ NSLNDFT IHSKFL PLPP++DEF +SL PHV+D+ LM EI PL+ + ++ A SY+K FFAPID EI Q+ +E K HG+DVLRIS LFAK+CSVL+I+ +TD K AL+ YANI NP SASS + +VR+ T++ +K+S +++VF+WGF G +A ML++ + S ++ S+EFD+R++D+SCA++ F KP S FL M S + SL L+SEGLRAA Y YK+VCSLG+WEV LA+SL+KALE DS+ S +V+W + +NLD+L
Sbjct: 19 PYLLQRRFLCTKTHQK----------WSVKQVTKSNFQETLSEIKIDIADSDFIAVSLQRTGSVSAPWHRVLPFDLPDTAYSKAKRAAERFQLLQFAVCPFSIRSSKLLAHPYNFHLFPRDELKIGMPSYSFSCQTSYLTSMAREGFDFNTCIYDGISYLSRAQESAARVQIRNPMRITHVVKSSPNPTVADSVFIERIKLRVKHWRKSCKDLSTKSDEVLVRSLRKIVLGSEEYGSRPCMNIDVCSERQVQLVLEMLGEFSDDLVPLIIPAKGGATQEVRVVLTSSKEDMVLFQNELQDLEEEWNKKVRGFREVIDLISASQRPVVSHNSLNDFTFIHSKFLAPLPPNVDEFLSSLRSVFPHVIDVQQLMKEILPLRNVTNIPTAISYLKDHFFAPIDVEILQQDAVNERKIHGHDVLRISLLFAKLCSVLRIAPIQTDSKKLVPALEEYANILNPCSASSQESTDGEVRIGTNNTRKVSCKHLVFLWGFKHGMTAGMLKSLIQGSHDIFSEEFDLRLVDRSCAIVVFWKPGLSETFLNVMNSEEIS-GSLRELVSEGLRAACYGIYKKVCSLGIWEVDLAESLEKALEESECFQNTDSEANSLDVHWFSDSTVNLDDL 627
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B6L9 | E-Value: 0.000e+0, PID: 62.24 | (Putative poly(A)-specific ribonuclease PARN-like ... [more] |
| A0A5J5C936 | E-Value: 0.000e+0, PID: 61.98 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8550... [more] |
| A0A2R6P6N0 | E-Value: 0.000e+0, PID: 61.16 | (Poly(A)-specific ribonuclease PARN-like {ECO:0000... [more] |
| A0A834G2I8 | E-Value: 0.000e+0, PID: 59.90 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7120... [more] |
| A0A6A4LWP4 | E-Value: 0.000e+0, PID: 59.94 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9460... [more] |
| A0A7J7FQV8 | E-Value: 0.000e+0, PID: 60.28 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5930... [more] |
| A0A068UTX0 | E-Value: 0.000e+0, PID: 56.60 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1172... [more] |
| A0A6P6TX62 | E-Value: 0.000e+0, PID: 56.44 | (poly(A)-specific ribonuclease PARN-like isoform X... [more] |
| A0A6P6TQC1 | E-Value: 0.000e+0, PID: 56.28 | (poly(A)-specific ribonuclease PARN-like isoform X... [more] |
| A0A2I4EFS7 | E-Value: 0.000e+0, PID: 58.87 | (poly(A)-specific ribonuclease PARN-like {ECO:0000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |