Resource Type:
Polypeptide
Name:
DCAR_018814
Identifier:
DCAR_018814.mRNA-protein
Sequence:
MCCILFQLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKM
PPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKY
KVSSSDMEKAASLGPGEPSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIA
RANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNL
LPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKM
DSFIRVIPSPRTRDRNQTSTTAAAEDDENYETDGEDIPEEEAVCRICLVE
VCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPV
KLLRVQSVQNRNTGAIGAPYMEVNGFRVWQEVPILVIVSILLYFCFLEEL
LVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLV
VIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRRLHVS
SN*
Sequence Length:
503
Sequence Checksum:
3db9f3af44480180233ef0820626fa96
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_018814, derives from mRNA, DCAR_018814. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VXS6 ((uncharacterized protein LOC113727776 {ECO:0000313|RefSeq:XP_027107923.1}))
HSP 1 Score: 488.419 bits (1256), Expect = 1.349e-166
Identity = 260/498 (52.21%), Postives = 342/498 (68.67%), Query Frame = 0
Match: A0A6P6VXS6 ((uncharacterized protein LOC113727776 {ECO:0000313|RefSeq:XP_027107923.1}))
HSP 1 Score: 488.419 bits (1256), Expect = 1.349e-166
Identity = 260/498 (52.21%), Postives = 342/498 (68.67%), Query Frame = 0
Query: 7 QLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKV--SSSDMEKAASLGPGEPS----DKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQ-TSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRR 496
++ SS+G +++T N K RK L E+ R D S +FVQIKMPP+PT + K+VN + PSPS+++ N+SPGPS +AK+S K++LPK S K + +D++KA++ G + +KPS+LRSWSLSKIFTP+M RTSSL PV V H +SE+ +G S +S T+ +TKG HI+RSLSVP++NK S ++MDSF RVIP+ PR +D + TS + A + EN + DGEDIPEEEAVCRIC +E+CEGGETLK+EC+CKGELALAH+ECAIKWFSIKG KTC+VCK EV+NLPV LLR+QSV+ +NT A +E+NG+RVW EVPILVIVS+L YFCFLE+LLV MG G++A+S+PFSC+LG LA+MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ +VH + +L I+L+TFAGFGVAM GS I E L+WRR+
Sbjct: 53 KVESSSGITEETGNAKNWRKQNLFLEIPTRTMDASCAEFVQIKMPPTPTPTPKRVNFMLTPSPSDSRLNSSPGPSSSRAKSSIKNLLPKLSFKNRNLNPETDIDKASNFDSGSSTTASQEKPSMLRSWSLSKIFTPRMKRTSSL--------------------------------------PVTPVAHLSSESVTDG--------SACSSLTL---------DTKGPQRHISRSLSVPAINKERSIKRMDSFFRVIPTTPRVKDGDSITSVSTAGGNTENSDADGEDIPEEEAVCRICFIELCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKQEVQNLPVTLLRIQSVRCQNTRASRVRNLEINGYRVWHEVPILVIVSMLAYFCFLEQLLV--GKMGTGAIAISLPFSCVLGLLASMTSSTMVKRRFVWVYASVQFALVVLFAHIFYSVVHVQAVLSILLSTFAGFGVAMSGSSIVVEFLRWRRQ 493
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U8Q7 ((E3 ubiquitin-protein ligase MARCH7-like {ECO:0000313|RefSeq:XP_027086322.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 9.469e-166
Identity = 260/498 (52.21%), Postives = 342/498 (68.67%), Query Frame = 0
Match: A0A6P6U8Q7 ((E3 ubiquitin-protein ligase MARCH7-like {ECO:0000313|RefSeq:XP_027086322.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 9.469e-166
Identity = 260/498 (52.21%), Postives = 342/498 (68.67%), Query Frame = 0
Query: 7 QLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKV--SSSDMEKAASLGPGEPS----DKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQ-TSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRR 496
++ SS+G +++T N K RK L E+ R D S +FVQIKMPP+PT + K+VN + PSPS+++ N+SPGPS +AK+S K++LPK S K + +D++KA++L G + +KPS+ RSWSLSKIFTP+M RTSSL PV V H +SE+ +G S +S T+ +TKG HI+RSLSVP++NK S ++MDSF RVIP+ PR +D + TS + A + EN + DGEDIPEEEAVCRIC +E+CEGGETLK+EC+CKGELALAH+ECAIKWFSIKG KTC+VCK EV+NLPV LLR+QSV+ +NT A +E+NG+RVW EVPILVIVS+L YFCFLE+LLV MG G++A+S+PFSC+LG LA+MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ +VH + +L I+L+TFAGFGVAM GS I E L+WRR+
Sbjct: 38 KVESSSGITEETGNAKNWRKQNLFLEIPTRTMDASCAEFVQIKMPPTPTPTPKRVNFMLTPSPSDSRLNSSPGPSSSRAKSSIKNLLPKLSFKNRNLNPETDIDKASNLDSGSSTTASQEKPSMSRSWSLSKIFTPRMKRTSSL--------------------------------------PVTPVAHLSSESITDG--------SACSSLTL---------DTKGPQRHISRSLSVPAINKERSIKRMDSFFRVIPTTPRVKDGDSITSVSTAGGNTENSDADGEDIPEEEAVCRICFIELCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKQEVQNLPVTLLRIQSVRCQNTRASRVRNLEINGYRVWHEVPILVIVSMLAYFCFLEQLLV--GKMGTGAIAISLPFSCVLGLLASMTSSTMVKRRFVWVYASVQFALVVLFAHIFYSVVHVQAVLSILLSTFAGFGVAMSGSSIVVEFLRWRRQ 478
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UG02 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})
HSP 1 Score: 483.026 bits (1242), Expect = 1.576e-164
Identity = 261/505 (51.68%), Postives = 341/505 (67.52%), Query Frame = 0
Match: A0A068UG02 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})
HSP 1 Score: 483.026 bits (1242), Expect = 1.576e-164
Identity = 261/505 (51.68%), Postives = 341/505 (67.52%), Query Frame = 0
Query: 7 QLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKV--SSSDMEKAASLGPGEPS----DKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQ-TSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFR-------VWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRR 496
++ SS+G +++T N K RK L E+ R D S +FVQIKMPP+PT + K+VN + PSPS+++ N+SPGPS +AK+S K++LPK S K + +D++KA++ G + +KPS+LRSWSLSKIFTP+M RTSSL PV V H +SE+ +G S S T+ +TKG HI+RSLSVP++NK S ++MDSF RVIP+ PR +D + TS + A + EN + DGEDIPEEEAVCRIC +E+CEGGETLK+EC+CKGELALAH+ECAIKWFSIKG KTC+VCK EV+NLPV LLR+QSVQ +NT A +E+NG+R VW EVPILVIVS+L YFCFLE+LLV MG G++A+S+PFSC+LG LA+MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ +VH + +L I+L+TFAGFGVAM GS I E L+WRR+
Sbjct: 38 KVESSSGITEETGNAKNWRKQNLFLEIPTRTMDASCAEFVQIKMPPTPTPTPKRVNFMLTPSPSDSRLNSSPGPSSSRAKSSIKNLLPKLSFKNRNLNPETDIDKASNFDSGSSTTASQEKPSMLRSWSLSKIFTPRMKRTSSL--------------------------------------PVTPVAHLSSESVTDG--------SACTSLTL---------DTKGPQRHISRSLSVPAINKERSIKRMDSFFRVIPTTPRVKDGDSITSVSTAGGNTENSDADGEDIPEEEAVCRICFIELCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKQEVQNLPVTLLRIQSVQCQNTRASRVRNLEINGYRQVIYLGMVWHEVPILVIVSMLAYFCFLEQLLV--GKMGTGAIAISLPFSCVLGLLASMTSSTMVKRRFVWVYASVQFALVVLFAHIFYSVVHVQAVLSILLSTFAGFGVAMSGSSIVVEFLRWRRQ 485
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TV34 ((uncharacterized protein LOC105170709 isoform X1 {ECO:0000313|RefSeq:XP_011089894.1}))
HSP 1 Score: 472.626 bits (1215), Expect = 9.485e-161
Identity = 253/490 (51.63%), Postives = 329/490 (67.14%), Query Frame = 0
Match: A0A6I9TV34 ((uncharacterized protein LOC105170709 isoform X1 {ECO:0000313|RefSeq:XP_011089894.1}))
HSP 1 Score: 472.626 bits (1215), Expect = 9.485e-161
Identity = 253/490 (51.63%), Postives = 329/490 (67.14%), Query Frame = 0
Query: 7 QLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGE----PSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQTSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELL 491
+L S+G + +TPN+K RK L E+ R ++S Q+FVQIKMPP+PT + K+VN + PSPS+++ N SP PS + K+S ++ILPK + K++ SSSD+EKA S+ DKPS+ RSWS SKIFT P + R +S PV V H+N ++ G++ N T +TKGA I+RSLSVP +NK + RKMDSF RVIPS PR ++ + + A DDEN E +GEDIPEEEAVCRICLVE+CEGGETLK+EC+CKGELALAH+ECAIKWF+IKG KTC++CK EV+NLPV LLR+QS NRNT ME+NG+RVWQEVPILVIVS+L YFCFLE+LLV MG ++A+S+PFSC+LG LA+MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ +VH +P+L I+++TFAGFGVAM GS + E+L
Sbjct: 30 KLEKSSGMAAETPNSKHWRKSNLFLEIPTRTLEVSRQEFVQIKMPPTPTPTPKRVNFLVTPSPSDSRLNGSPLPSSTRGKSSIRNILPKLNFKHRASSSDVEKAGSIDSSSLTTVTQDKPSMSRSWSFSKIFT-----------PRMKRTSS---------------------------LPVTPVAHSNPDSAHGGSI-----------------NCHLTLDTKGAR-RISRSLSVPVINKEKNIRKMDSFYRVIPSTPRVKNGDAEVSKATTGDDENDEANGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAIKWFAIKGNKTCDICKQEVENLPVTLLRIQSSINRNTSGSNFGQMEINGYRVWQEVPILVIVSMLAYFCFLEQLLV--GKMGSSAIAISLPFSCVLGLLASMTSSTMVKRRFVWVYASVQFALVVLFAHIFYNLVHVQPVLSILISTFAGFGVAMSGSSVVVEVL 461
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4LYR6 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292} (Fragment))
HSP 1 Score: 469.544 bits (1207), Expect = 2.670e-159
Identity = 256/503 (50.89%), Postives = 331/503 (65.81%), Query Frame = 0
Match: A0A6A4LYR6 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292} (Fragment))
HSP 1 Score: 469.544 bits (1207), Expect = 2.670e-159
Identity = 256/503 (50.89%), Postives = 331/503 (65.81%), Query Frame = 0
Query: 19 PNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGE----PSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFT--GTQNTKGAHSHIARSLSVPSLNKLTS--TRKMDSFIRVIPS-PRTRDRNQ-TSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGF---------RVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRRLHVSSN 502
P+ KQ RKP L E+ +R ++S +++VQIKMPP+PT + K+VN + PSPS+A+ + SPGPS + K+S K +LPK S K + S SD E+AA+L P DKPSI RSWSL+KIFT P + R +S LP PI +N E+I G N + T TKGA I+RSLSVP LN + R+ DSF RVIPS P+ ++ + +STT A D EN E GEDIPEEEAVCRICLVE+CEGGETLK+EC+CKG+LALAH+ECA+KWFSIKG TC+VCK EV+NLPV LLR+QSV+NRNTGA A ++E+NG+ RVWQEVPILVIVS+L YFCFLE+LLV MG G+V +S+PFSC+LG LA+MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ ++H + +L I+L+TFAGFG++M GS I E+ +WRR H ++
Sbjct: 55 PHAKQWRKPNLFLEIPSRALEVSPKEYVQIKMPPTPTPTPKRVNFLLTPSPSDARVSGSPGPST-RGKSSLKSLLPKLSFKSRTSQSDAERAANLAVEASSPMPQDKPSISRSWSLTKIFT-----------PRMKRTSS----------------------------------------------LPVTPIGHSNPESICGENLSSSATLKTKGALRSISRSLSVPDLNAIKDRRMRRTDSFFRVIPSTPQVKEGDTVSSTTTPAGDAENSEASGEDIPEEEAVCRICLVELCEGGETLKMECSCKGDLALAHQECAVKWFSIKGNMTCDVCKQEVRNLPVTLLRIQSVRNRNTGANRASHIEINGYRQFCFIILTRVWQEVPILVIVSMLAYFCFLEQLLV--GRMGTGAVTISLPFSCVLGLLASMTSSTMVKRRFVWVYASVQFALVVLFAHIFYTLIHVQSVLSILLSTFAGFGISMSGSSILVEVFRWRRHWHAQAD 497
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7FVB5 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})
HSP 1 Score: 463.381 bits (1191), Expect = 3.730e-157
Identity = 256/504 (50.79%), Postives = 327/504 (64.88%), Query Frame = 0
Match: A0A7J7FVB5 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})
HSP 1 Score: 463.381 bits (1191), Expect = 3.730e-157
Identity = 256/504 (50.79%), Postives = 327/504 (64.88%), Query Frame = 0
Query: 5 LFQLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQD-FVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGE--------PSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQT--STTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRR 496
+ ++++ + + +TPN K +K L E+ R +S D FVQIKMPP+PT + KKVN + PSPS+A+T SPGPS + K+ K +LPK S K + S SD E+A + PG P +KPSI RSWSL++IFTP+M T+S LPV+ V ++N ESI GEN + + NTKGA I+RSLSVP + K ++ DSF RVIPS PR ++ + T + T D EN E DGEDI EEEAVCRICLVE+CEGGETLK+EC+CKGELALAH+ECAIKWFSIKG K C+VCK EV+NL V LLRVQSVQN N+GA A ME+NG+R+WQEV ILVIVS+L YFCFLE+LLV MG G+VA+S+PFSC+LG L++MTSSTMVK RFVW+Y++ QF+LVVIFAH+F+ +VH + +L I+L+TF GFG+AM GS I E +WRR
Sbjct: 30 IHKIDNPSAIASETPNPKHWKKQNLFLEVPTRRLHVSPHDEFVQIKMPPTPTPTPKKVNFVLTPSPSDARTIGSPGPSSARGKSGFKSLLPKLSFKARSSQSDAERATA-NPGVEASSPLPLPQEKPSISRSWSLTRIFTPRMKSTTSS------------------LPVTPVGQSNLESIGGENLGGLVNL------------------------------------NTKGAPRQISRSLSVPVIRKERRMKRSDSFFRVIPSTPRVKEVDSTMPNATTPTGDTENNEDDGEDIHEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKICDVCKQEVQNLSVTLLRVQSVQNPNSGANRALQMEINGYRIWQEVSILVIVSMLAYFCFLEQLLV--GKMGTGAVAISLPFSCVLGLLSSMTSSTMVKRRFVWIYSSTQFALVVIFAHIFYSVVHVQAVLSILLSTFTGFGIAMSGSSILVEFFRWRRH 476
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9V2I4 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})
HSP 1 Score: 462.611 bits (1189), Expect = 5.022e-157
Identity = 244/499 (48.90%), Postives = 327/499 (65.53%), Query Frame = 0
Match: A0A2C9V2I4 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})
HSP 1 Score: 462.611 bits (1189), Expect = 5.022e-157
Identity = 244/499 (48.90%), Postives = 327/499 (65.53%), Query Frame = 0
Query: 11 SAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGE----PSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNT--KGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQTSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRRLHVSSN 502
S G+ ++ ++ Q ++ L E+ +R + SSQD V IK+PPSP+ + +KVN + PS S+A+ SPGPS + K+S + +LPK S K ++S+ D+EKAA+L P P +KPSI RS SLSKIFT P + RA+S LP PI+ +NSE+ G + G+ N+ KG I+RSLSVP K S R+MDSF RVIPS PR ++ + + + D E +TDGEDIPEEEAVCRICLVE+CEGGETLK+EC+CKGELALAH+ECA+KWFSIKG KTC+VCK EV+NLPV LL++QSV++R G A + NG+R+WQEVP+LVI+S+L YFCFLE+LLV +MG G++A+S+PFSC+LG L++M SSTMVK RFVW+YA+ QF+L+V FAH+F+ +V+ + +L I+LATFAGFGVAM GS I E+++WRRR SN
Sbjct: 31 STGTVEEGNHSHQWKRSNLFLEIPSRTLEDSSQDSVVIKIPPSPSPTPRKVNFLLTPSSSDARACGSPGPSTSRGKSSLRSLLPKLSFKSRISTLDVEKAANLPPDTSCNIPREKPSISRSLSLSKIFT-----------PRMNRASS----------------------------------------------LPVTPIANSNSESTRGGSTGGSLNSSGKGPQKKISRSLSVPVNGKERSIRRMDSFFRVIPSTPRVKEGDVITNASPGNDTETDDTDGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKQEVQNLPVTLLKIQSVRSRTGGMSRALQADANGYRIWQEVPVLVIISMLAYFCFLEQLLV--GNMGTGAIAISLPFSCVLGLLSSMISSTMVKRRFVWVYASTQFALLVFFAHIFYSLVNLQAVLSILLATFAGFGVAMSGSSIVVEIVRWRRRWTAQSN 470
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9IAD1 ((Ubiquitin--protein ligase {ECO:0000313|EMBL:PIN26716.1}))
HSP 1 Score: 461.07 bits (1185), Expect = 2.911e-156
Identity = 247/490 (50.41%), Postives = 326/490 (66.53%), Query Frame = 0
Match: A0A2G9IAD1 ((Ubiquitin--protein ligase {ECO:0000313|EMBL:PIN26716.1}))
HSP 1 Score: 461.07 bits (1185), Expect = 2.911e-156
Identity = 247/490 (50.41%), Postives = 326/490 (66.53%), Query Frame = 0
Query: 5 LFQLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAAS---LGPGEPSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQTSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFEL 490
+ +L +S+ ++ N+K RK L E+ R ++S Q+FVQIKMPP+ T + K+VN + PSPS+++ SPGPS +AK+S ++ILPK +KY+ S+SD +KAA+ L G P D PSI +SWS SKIFTP+M R SSL PV + ++N +TR G R NS T +TKG ++RSLSVP +NK RK DSF RVIPS P+ D + ++TA A DDE ET+GEDIPEEEAVCRICLVE+CEGGETLK+EC+CKGELALAH++CA+KWF+IKG +TC+VCK EV+NLPV LLR+QS NRNT ME+N +RVW EVPILVI+S+L YFCFLE+LLV MG ++A+S+PFSC+LG L++MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ +VH + +L I+L+TFAGFGV+M S I E+
Sbjct: 30 IHELETSSEMAEQKSNSKHWRKSNLFLEIPTRTLEVSRQEFVQIKMPPTTTPTPKRVNFVVTPSPSDSRLKGSPGPSSTRAKSSIRNILPKLKLKYRGSNSDTDKAANDIDLATGAP-DTPSISQSWSFSKIFTPRMKRPSSL--------------------------------------PVTPLANSNPNSTRGG---------RTNSRL--------TLDTKGVR-RMSRSLSVPVINKEKGIRKTDSFFRVIPSTPKVTDADTPASTATAGDDEKNETNGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQDCAVKWFAIKGNQTCDVCKQEVRNLPVTLLRIQSCINRNTTVSNLGQMEINRYRVWHEVPILVIISMLAYFCFLEQLLV--GKMGSSAIAISLPFSCVLGLLSSMTSSTMVKRRFVWVYASVQFALVVLFAHIFYNLVHIQAVLSILLSTFAGFGVSMSASSIVVEV 460
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6GU03 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})
HSP 1 Score: 458.373 bits (1178), Expect = 1.729e-155
Identity = 247/503 (49.11%), Postives = 329/503 (65.41%), Query Frame = 0
Match: F6GU03 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})
HSP 1 Score: 458.373 bits (1178), Expect = 1.729e-155
Identity = 247/503 (49.11%), Postives = 329/503 (65.41%), Query Frame = 0
Query: 7 QLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGEPS----DKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGT--QNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRN-QTSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRRLHVSS 501
++ S G +++TP+ +Q R+ L E+ +R + SSQD V+IKMPP+P+ + KKVN PSPS+ + SPGPS K K+S K +LPK S K + ++SD +KAA+L G S +KPSI RS SLSKIFT P + R +S LP P+ +N E++ G + +T+G H I+RSLSVP NK S ++MDSF RVIPS PR ++ + T ++ A + EN E DGEDIPEEEAVCRICLVE+CEGGETLK+EC+CKGELALAH+ECA+KWF IKG K C+VCK EV+NLPV LLR+QS+Q RN+G+ A EVNG+RVW E+P+LVIVS+L YFCFLE+LLV +MG ++A+S+PFSC+LG LA+MT+STMVK RF+W+YA++QF+LVV+FAH+F+ +V + +L I+L+TFAG G+AM GS I ELL+WR R H S
Sbjct: 27 EVEDSTGITEETPHFQQWRRQNLFLEIPSREMEASSQDSVRIKMPPTPSPTPKKVNFFLTPSPSDTRVTGSPGPSATKGKSSKKSLLPKLSFKNRSATSDSDKAANLALGGSSTTSREKPSISRSLSLSKIFT-----------PKMNRTSS----------------------------------------------LPGTPLEHSNPESVSGGSIGSALKSDTRGVHRRISRSLSVPVNNKDRSIKRMDSFFRVIPSTPRVKELDAMTMNSSPAVEAENNEADGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAVKWFRIKGNKNCDVCKQEVQNLPVTLLRIQSIQTRNSGSNRAHQTEVNGYRVWHELPVLVIVSMLAYFCFLEQLLV--GNMGTSAIAISLPFSCVLGLLASMTASTMVKRRFIWVYASIQFALVVLFAHIFYSLVRVQAVLSILLSTFAGLGIAMSGSSIIVELLRWRLRWHAWS 470
BLAST of DCAR_018814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BAY0 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292} (Fragment))
HSP 1 Score: 458.759 bits (1179), Expect = 6.212e-155
Identity = 254/495 (51.31%), Postives = 327/495 (66.06%), Query Frame = 0
Match: A0A5B7BAY0 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292} (Fragment))
HSP 1 Score: 458.759 bits (1179), Expect = 6.212e-155
Identity = 254/495 (51.31%), Postives = 327/495 (66.06%), Query Frame = 0
Query: 7 QLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSL--KKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGE----PSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQN--TKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRN-QTSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELL 491
++ S+G +++TPN K +K L E+ +R ++ Q+FVQIKMPP+PT + KKVN + PSPS+A+ + SPGP + KTS K+++PK S KY+ ++SD EKAAS G P +KPSI RS L+KIFT P + R +S LP PI+ +N E++ G + + N KGA HI+RSLSVP N+ S R+MDSF RVIPS PR +D + S T D EN E DGEDIPEEEAVCRICLVE+CEGGETLK+EC+CKGELALAH+ECA+KWFSIKG KTC+VCK EV+NLPV LLR+QSV+N+N GA MEVNG+RVWQEVP+LVIVS+L YFCFLE+LLV MG G++A+S+PFSC++G LA+MTSSTMV RFVW+YA++QF+LVV+FAH+F+ +VH + +L I+L+TFAG GVAM GS I E L
Sbjct: 61 EVEDSSGITEETPNGKHWKKQNLYLEIPSRKLEVCPQEFVQIKMPPTPTPTPTPKKVNFLLTPSPSDARVSESPGPPSSRGKTSIKNLIPKLSFKYRSATSDTEKAASPAIGASSTMPPEKPSISRS--LTKIFT-----------PRMKRTSS----------------------------------------------LPVTPIAHSNPESVQGGSVSSLLNLDAKGAQQHISRSLSVPVNNRERSIRRMDSFFRVIPSTPRVKDGDAMMSDTTPMGDVENNEADGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKQEVQNLPVTLLRIQSVRNQNAGANRVRQMEVNGYRVWQEVPVLVIVSMLSYFCFLEQLLV--GKMGTGAIAISLPFSCVMGLLASMTSSTMVMRRFVWVYASVQFALVVLFAHIFYSVVHLKAVLSILLSTFAGLGVAMSGSSILVEFL 494
| Match Name | Stats | Description |
|---|---|---|
| A0A6P6VXS6 | E-Value: 1.349e-166, PID: 52.21 | (uncharacterized protein LOC113727776 {ECO:0000313... [more] |
| A0A6P6U8Q7 | E-Value: 9.469e-166, PID: 52.21 | (E3 ubiquitin-protein ligase MARCH7-like {ECO:0000... [more] |
| A0A068UG02 | E-Value: 1.576e-164, PID: 51.68 | RING-CH-type domain-containing protein {ECO:000025... [more] |
| A0A6I9TV34 | E-Value: 9.485e-161, PID: 51.63 | (uncharacterized protein LOC105170709 isoform X1 {... [more] |
| A0A6A4LYR6 | E-Value: 2.670e-159, PID: 50.89 | RING-CH-type domain-containing protein {ECO:000025... [more] |
| A0A7J7FVB5 | E-Value: 3.730e-157, PID: 50.79 | RING-CH-type domain-containing protein {ECO:000025... [more] |
| A0A2C9V2I4 | E-Value: 5.022e-157, PID: 48.90 | RING-CH-type domain-containing protein {ECO:000025... [more] |
| A0A2G9IAD1 | E-Value: 2.911e-156, PID: 50.41 | (Ubiquitin--protein ligase {ECO:0000313|EMBL:PIN26... [more] |
| F6GU03 | E-Value: 1.729e-155, PID: 49.11 | RING-CH-type domain-containing protein {ECO:000025... [more] |
| A0A5B7BAY0 | E-Value: 6.212e-155, PID: 51.31 | RING-CH-type domain-containing protein {ECO:000025... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |