MGAGRKTQTFVLNDNKIPILNQAPYSGFRNLGKSQLGGVIFGCKNATLKE
CLNNQLFDMIRPEVIYLKSNMSIRYQSSIYLFGVDLELRTWVQVRLRVQC
QSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSAL
QLTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDCNH
SFEAYSDRRTIEESEKDIMYMKLKEMAFKRLDPSLSVEDNVVTDGENSEH
EGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKME
YLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDIN
EFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEI
YVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNN
KLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTN
LKAIGRRCFASAIVL*
| Relationships |
|---|
| The polypeptide, DCAR_018667, derives from mRNA, DCAR_018667. |

Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B6YV65 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222} (Fragment))
HSP 1 Score: 424.476 bits (1090), Expect = 4.652e-139
Identity = 257/529 (48.58%), Postives = 329/529 (62.19%), Query Frame = 0
Query: 1 MGAGRKTQTFVLNDNKIPILNQAPYSGF-RNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRTW----VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQLTKE-----RKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDG-SPDDLVVDC----NHSFEAYSDRRTIEESEKDIMYMKLKEMAFKRLDPSLS-----VEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
MGAGR+TQ F+ N++ NQA + RNL KS LGGVIFGCKN T+KECL QL + Y+K+ N S R I Y + +D RT VQ+R+R+ CQ+L E+QFKPII DNY+ NHFWFELDHAQT RL+SLLSS+ +AP++ A Q T + R +P + RE+ +EG VD A+ +G S V C N EA D++ +E+ E+D++YMKLKE+A R + S S VE+ V + + EH+G L+ Q ISEEK E S D + QL + +EEL AFKTEQ QKM L+QKLV AE EI+ LKDRC++LES SN + D T E+ EL D++E ++L+GGYDG+ WLSALD+YSP D +KSL+PMN +YASVA+FN E+YVFGGGN +WY T VESY+PA WT PSL KGSLA AT+NNK+FA+GGGNG E +SDVEM D+DVG WI TRSM+HK
Sbjct: 38 MGAGRRTQNFLQNESAPSTPNQATDTACARNLRKSHLGGVIFGCKNGTIKECLFKQLLGLPAQHFSYVKNIDPGLPLFLFNYSDRKLHGIFEAASSGQMNINPYAWTMDGSERTQYPSQVQIRVRLHCQALIEDQFKPIIFDNYYSQNHFWFELDHAQTSRLMSLLSSLAVAPSSFAPQNTAKWRTLFRSLP-SPDMREE-SEGLKPPALEVDFAYCYKPNGKSGSSDVALCSDENNQLLEARLDQQVVEKDEEDLIYMKLKELALNR-ECSGSRLTNCVENTAVANDVHLEHQGFLEAQTISEEKNEENLANSFDYPFIITQLIQEMEELKAFKTEQIQKMGCLEQKLVEAEIEIRQLKDRCMMLESMSNPSIEPVDETVVESCNELHIDLDEVIFLVGGYDGVSWLSALDSYSPSQDVIKSLKPMNSFHSYASVAKFNGELYVFGGGNGCLWYNT-----VESYNPANNQWTLHPSLKEKKGSLASATLNNKIFAIGGGNGIECFSDVEMFDIDVGCWISTRSMLHK 558
HSP 2 Score: 104.375 bits (259), Expect = 6.935e-21
Identity = 56/162 (34.57%), Postives = 81/162 (50.00%), Query Frame = 0
Query: 354 YLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTNLKAIGRRCFASAIVL 515
Y IGGYDG +L + + + P ++ MN R S N++IYV GG + T + P +E + P TW + +N+ +G A A ++ +GG ++ D +ECY+EGQGWQ+TNLKAIG+RCF SAIVL
Sbjct: 572 YAIGGYDGKDYLKSAERFDPREHAWTRIESMNTKRGCHSSVVLNEKIYVLGG-----YDGTAMVPSIEIFDPRLGTWMTGEPMNQSRGYSAAAVFKESIYVIGGVKAGDNIVDT-------------------VECYEEGQGWQVTNLKAIGKRCFFSAIVL 709
Match: A0A5J4ZHV6 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})
HSP 1 Score: 417.542 bits (1072), Expect = 6.368e-137
Identity = 249/528 (47.16%), Postives = 331/528 (62.69%), Query Frame = 0
Query: 1 MGAGRKTQTFVLNDNKIPILNQAPYSGF-RNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRTW----VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQLTKERKI---PLTSQWREKGNEGFDTAVSNVDVAHS-------SSSDGSPDDLVVDCNHSFEAYSDRRTIEESEKDIMYMKLKEMAFKR----LDPSLSVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
MGAG++TQTF+ N++ NQA + + RNL KS LGGVIFGCKN T+KECL QLF + Y+K+ N S R I Y + +D RT VQVR+R+ CQ+L E+QFKPIIVDNY+ NHFWFELDHAQT +L+SLLSS+ +AP+T A Q T + + L S + +EGF VD ++S SSD +P + + N EA+ ++ E+ E+D++Y KLKE+A R + VE+ V + + +H+ L+ ISEEK E + S D + QL + +EEL AFKTEQ QK + L+QKLV AE EI+ LK+RC++LES SN V D T +E+ EL D++E ++L+GGY+G WLSALD+YSP D +KS PMN R+YASVA+FN E+YVFGGG+ +WY+T VESY+PA WT PS+N KGSLAGAT+NNK+FA+GGGNG + +SDVEM D+DVGRWI TRSM+ K
Sbjct: 2 MGAGKRTQTFIANESAPSTPNQATGTAYARNLRKSHLGGVIFGCKNGTIKECLFKQLFGLPTQHFSYVKNIDPGLPLFLFNYSDRKLHGIFEAASSGQMNINSYAWTIDGSERTQYPAQVQVRVRLHCQALLEDQFKPIIVDNYYSQNHFWFELDHAQTSKLMSLLSSLAVAPSTFAPQNTAKWRTLFQTLPSPDMREESEGFKLPNLEVDFSYSYKPNGKLGSSDVAP--CIDENNQPLEAHLGQK--EKDEEDLIYTKLKELALNRECSGSRLTGGVEETAVANDVHMDHQCFLEPHTISEEKNEENLINSFDYPFIITQLIQEMEELKAFKTEQIQKTDCLEQKLVEAEIEIRQLKNRCMMLESMSNPSVEHVDETVTESCNELHIDLDEVIFLVGGYNGESWLSALDSYSPSRDVIKSFAPMNFIRSYASVAKFNGELYVFGGGHGCLWYDT-----VESYNPANNQWTLLPSMNEKKGSLAGATLNNKIFAIGGGNGVDCFSDVEMFDIDVGRWISTRSMLQK 520
HSP 2 Score: 94.7449 bits (234), Expect = 7.035e-18
Identity = 53/162 (32.72%), Postives = 84/162 (51.85%), Query Frame = 0
Query: 354 YLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTNLKAIGRRCFASAIVL 515
Y IGGYDG +L +++ + P T ++ MN R S+A N++IYV GG + T + P +E + P +W + +N+ +G A A V L+ +GG I + + +E Y+EG+GW++TNL+AIG+R + SAIVL
Sbjct: 534 YAIGGYDGKDYLKSVERFDPREHTWTRIEGMNTKRGCHSLAVLNEKIYVLGG-----YDGTAMVPSIEIFDPRLGSWMTGEPMNQSRGYSAAAVVKESLYIIGG-------------------VITDDNNVDTVERYEEGRGWEVTNLRAIGKRSYFSAIVL 671
Match: A0A2R6RXG4 ((Kelch-like protein {ECO:0000313|EMBL:PSS34725.1}))
HSP 1 Score: 409.068 bits (1050), Expect = 1.088e-133
Identity = 243/524 (46.37%), Postives = 313/524 (59.73%), Query Frame = 0
Query: 1 MGAGRKTQTFVLNDNKIPILNQAPYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRT----WVQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIA----PNTSALQLTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDCN-------HSFEAYSDRRTIEESEKDIMYMKLKEMAFKRLDPSLSVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
M AGR+TQT VLN++ N+A RNL ++ LGGV+FGC N+T+ ECL Q+F + Y+K+ N S R I Y + D RT VQ+ +R++CQ L EEQFKPII+DNY+ NHFWFELDHAQT +L+SLLS IA P +A Q + P + +E+G +G V++ HSS S S D H E D++ +E+ E+D++YMKLKE+A R L + D V D + E + + EEK E + V S D S +AQL + +EEL FK EQ KM L++KLV AE EI+ L RC+ LES S VA D T ++ +L+PD++E ++L+GGYDG WLSALD+YSP D +K+L PMN R+YASVAR NDE YVFGGGN +WY+T VESY PA WT RPSLN KGSL GAT+NNK+FALGGGNG ES++DVEMLDLDVGRWI TRSM+ K
Sbjct: 1 MDAGRRTQTIVLNESAAFSPNKA--INHRNLTRNHLGGVVFGCTNSTINECLFKQVFGLPAQHFPYVKNIGPGLPLFLFNYSDRKLHGIFEAASSGKMNINPYAWTTDGTERTIFPAQVQIHIRLRCQPLPEEQFKPIIIDNYYSQNHFWFELDHAQTSKLMSLLSCRAIASSTVPPRNATQWRTLFQAPPSHDRKEEG-DGIKPPAFEVEIPHSSKSSKSNGSSSSDIATCLDSNIHPLENCLDKQVVEK-EEDLIYMKLKELALSRERSDLPLSD--VEDSAVTGQEAFSEARTNLEEKNEESLVSSCDYPSIIAQLIQEIEELQVFKIEQIHKMGCLEEKLVEAEIEIQQLNQRCIALESLSQPSVACVDETTMDSSNDLEPDLDELIFLVGGYDGGSWLSALDSYSPTHDVIKTLNPMNSIRSYASVARLNDEFYVFGGGNGCLWYDT-----VESYDPANNQWTLRPSLNVKKGSLGGATLNNKIFALGGGNGVESFADVEMLDLDVGRWIFTRSMLEK 513
HSP 2 Score: 50.8322 bits (120), Expect = 5.199e-4
Identity = 21/57 (36.84%), Postives = 36/57 (63.16%), Query Frame = 0
Query: 349 INEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGG 405
+NE +Y+IGG+DG + +++ Y P L + + +P+ +R Y+S A D IY+ GG
Sbjct: 569 LNEKLYVIGGFDGSAMVPSIEIYDPRLGSWEMGEPIYQSRGYSSAAVLKDAIYILGG 625
Match: A0A7J0E7F8 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})
HSP 1 Score: 406.757 bits (1044), Expect = 4.214e-133
Identity = 242/524 (46.18%), Postives = 311/524 (59.35%), Query Frame = 0
Query: 1 MGAGRKTQTFVLNDNKIPILNQAPYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRT----WVQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIA----PNTSALQLTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDCN-------HSFEAYSDRRTIEESEKDIMYMKLKEMAFKRLDPSLSVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
M AGR+TQT VLN++ N+A RNL ++ LGGV+FGC N+T+ ECL Q+F + Y+K+ N S R I Y + D RT VQ+ +R++CQ L EEQFKPII+DNY+ NHFWFELDHAQT +L+SLLS IA P +A Q + P + +E+G +G V++ HSS S S D H E D++ +E+ E+D++YMKLKE+A R L + D V D + E + + EEK E + V S D S +AQL + +EEL FK EQ KM L++KLV AE EI+ L RC+ LES S VA D T E+ +L+PD++E ++L+GGYDG WLSALD+YSP D +K+L PMN R+YASVAR NDE YVFGGGN +WY+T VESY PA WT RPSLN KGSL GAT+NNK+FALGGGNG ES++DVEMLDLDVG W TRSM+ K
Sbjct: 1 MDAGRRTQTIVLNESAAFSPNKA--INHRNLTRNHLGGVVFGCTNSTINECLFKQVFGLPAQHFPYVKNIGPGLPLFLFNYSDRKLHGIFEAASSGKMNINPYAWTTDGTERTVFPAQVQIHIRLRCQPLPEEQFKPIIIDNYYSQNHFWFELDHAQTSKLMSLLSCRAIASSTVPPRNATQWRTLFQAPPSHDRKEEG-DGIKPPAFEVEIPHSSKSSKSNGSSSSDIATCLDSNIHPLENCLDKQVVEK-EEDLIYMKLKELALSRERSDLPLSD--VEDSAVTGQEAFSEARTNLEEKNEESLVSSCDYPSIIAQLIQEIEELQVFKIEQIHKMGCLEEKLVEAEIEIQQLNQRCIALESLSQPSVACVDETTMESSNDLEPDLDELIFLVGGYDGGSWLSALDSYSPTHDVIKTLNPMNSIRSYASVARLNDEFYVFGGGNGCLWYDT-----VESYDPANNQWTLRPSLNVKKGSLGGATLNNKIFALGGGNGVESFADVEMLDLDVGHWFCTRSMLEK 513
HSP 2 Score: 47.7506 bits (112), Expect = 4.840e-3
Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 0
Query: 348 DINEFM-YLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGG 405
D N+++ Y+IGG+DG + +++ Y P L + + +P+ +R Y+S A D IY+ GG
Sbjct: 533 DGNDYLKYVIGGFDGSAMVPSIEIYDPRLGSWEMGEPIYQSRGYSSAAVLKDSIYILGG 591
Match: A0A834LDZ8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7132300.1}))
HSP 1 Score: 396.356 bits (1017), Expect = 1.230e-128
Identity = 245/524 (46.76%), Postives = 320/524 (61.07%), Query Frame = 0
Query: 1 MGAGRKTQTFVLNDNKI----PILNQAPYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKSNMSIRYQSSIYLFG-----------------VDLELRTW-------------VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQ-LTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDCNHSFEAYSDRRTIEESEKDIMYMKLKEMAF--KRLDPSLS-VEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
M AGR+T TF N++ LNQ +R LGK LGGVIFGCK++T+KECL QLF + Y+K +I ++LF ++L W VQ+RL ++C L EEQFKPII DNY+ +NHFWFELDHAQ +L SLLSS+ IAP+T A Q TK R + ++ E + A DG+ D NH E +++ +E+ E D++YMKLKE+ +R +P L+ ++D+ + +S EGL Q SE E + + S D S +AQL + +EEL FK EQ KM L+QKLV AE+EIK LK RC+VLESR + +VA + A E F +LD D++E ++L+GGYDG WLSALD+YSP D +KSL+PMNC R+Y+SVAR N E+YVFGGGN S+WY++ VESY PA WT RPSLN KGSL GAT+NNK+FA+GGGNG ES++DVEMLDLDVGRWI TRSM+ K
Sbjct: 1 MVAGRRTHTFTPNESSAFSPNQALNQNQAVNYRKLGKRHLGGVIFGCKSSTIKECLFKQLFGLPAQHFCYVK---NIEPGMPLFLFNYTDRKLHGIFEAASPGQMNLNPYAWTTDGSERTVFPAQVQIRLGLRCHPLSEEQFKPIISDNYYTTNHFWFELDHAQASKLSSLLSSMAIAPSTFAPQNSTKWRALFQAPPSHDRAKEIEEPFKPQAFEAGWRPLDGATLDA---NNHGLEDSFEKQVVEKPE-DLIYMKLKELVCNRERSNPPLADIQDSAAVNELHSGQEGLSDAQTNSERISEESLINSLDYPSVVAQLVQGMEELKVFKREQIHKMCCLEQKLVEAESEIKQLKHRCVVLESRLHPFVAHVEEMAVEPFNDLDLDLDELIFLVGGYDGASWLSALDSYSPSHDVIKSLKPMNCIRSYSSVARLNGELYVFGGGNGSLWYDS-----VESYDPASDHWTLRPSLNVQKGSLGGATLNNKIFAIGGGNGVESFADVEMLDLDVGRWIGTRSMLQK 512
HSP 2 Score: 94.3597 bits (233), Expect = 1.029e-17
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 0
Query: 348 DINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTNLKAIGRRCFASAIVL 515
++N +Y +GGYDG +L + + + P + + MN R S+A N+++Y GG + S E V P VE + P +W +++ +G A + + L+ +GG S ++D+ +E YKEGQGW++TNL+AIG RCF SAIVL
Sbjct: 520 ELNGALYAVGGYDGKDYLESAERFDPREHSWTKIASMNTKRGCHSMAVLNEKLYAIGGYDGS---EMV--PSVEIFDPRLGSWMIGEPMDQSRGYSCAAVLKDSLYVIGGVKPGGSEKHETIVDM--------------VERYKEGQGWEVTNLRAIGERCFFSAIVL 668
Match: A0A2N9G9P6 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})
HSP 1 Score: 393.275 bits (1009), Expect = 2.856e-127
Identity = 242/552 (43.84%), Postives = 314/552 (56.88%), Query Frame = 0
Query: 1 MGAGRKTQTFVLNDNKIPILNQAPYSG-FRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRTW----VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQ-LTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDC-----NHSFEAYSDRRTIEESEKDIMYMKLKEMAFK--------------------------------RLDPSLSVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
MGAGRKTQTF +N++ + S RNL KSQLGGVIFGC+N+T+KECL QLF + Y+K+ N S R I Y + D RT VQ+R+R++CQ L E QFKPII DNY+ HFWFELDHAQ RL+SLLSS V+AP+T Q TK R I + G EG ++ HS+ S D V N S E++ DR+ +E+ EKD+++MKLKE+A + L S V+D V +G E +G + EEK E+ S S +AQL + V+EL AF+TEQ QK L+QKL+ AE EI+ LKD ++LE ++ V E+ D NE ++L+GG+DG WLSALD+Y P D +KSL+PM+C R+Y+SVA+ E+YVFGGG+ S+WY+T VESY A WTSRPSLN+ KGSLAGAT++NKLFA+GGGNG E +SDVEMLDLD+GRWI TRSM+ K
Sbjct: 1 MGAGRKTQTFPINEHAPSLPKTVKSSATARNLMKSQLGGVIFGCRNSTIKECLFKQLFGLPAQHSSYVKNIDPGLPLFLFNYSDRRLHGIFEAASAGQMNINPYGWTTDGSERTLYPAQVQIRVRLRCQPLLENQFKPIIADNYYTQTHFWFELDHAQAIRLMSLLSSSVVAPSTYVPQNTTKWRTIFQALPPNDAGEEGEGFKPLALETEHSNHSSLKSDSADVASSFDGDNQSLESHLDRKLVEQDEKDVIFMKLKELALQPMSSDSHGTASPCKNKVEGQVVGSRPIEIEEFALPMSGFVDDTTVLNGIQLEEKGFQVEPMGVEEKNEVCLHSSSKCQSIIAQLIQEVQELKAFRTEQIQKTSILEQKLMEAEMEIQQLKDYRVMLEPVADPSV---------VLDEVHLDHNESIFLVGGFDGETWLSALDSYYPSQDVIKSLRPMSCVRSYSSVAQLKGELYVFGGGDGSLWYDT-----VESYSLANDLWTSRPSLNQEKGSLAGATIDNKLFAIGGGNGVECFSDVEMLDLDIGRWISTRSMLQK 538
HSP 2 Score: 80.8777 bits (198), Expect = 1.908e-13
Identity = 51/175 (29.14%), Postives = 79/175 (45.14%), Query Frame = 0
Query: 342 FTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQ-LTNLKAIGRRCFASAIVL 515
F ++N +Y GG+DG +L + + + P + + MN R S+ N+++Y GG + S + P VE + P +WT + +G A V + +GG + VG +++ IE YKEGQGWQ + IG+RCF SAIVL
Sbjct: 540 FAVAAAELNGVLYATGGFDGKDYLMSAERFDPREHSWTKIASMNKKRGSHSLVVLNEKLYALGGYDGS-----TMVPSVEIFDPRLGSWTIGEPMKNPRGYFAAGAVKESICVIGG--------------IRVG-----ENIVDTIETYKEGQGWQEIHTSTTIGKRCFLSAIVL 690
Match: A0A6A4L620 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222} (Fragment))
HSP 1 Score: 394.815 bits (1013), Expect = 8.827e-127
Identity = 243/501 (48.50%), Postives = 319/501 (63.67%), Query Frame = 0
Query: 1 MGAGRKTQTFVLNDNKI----PILNQAPYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLF---DMIRPEVIYLKSNMSIRYQSSIYLFGVDLELRT----WVQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQ-LTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDCNHSFEAYSDRRTIEESEKDIMYMKLKEMAF--KRLDPSLS-VEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
M AGR+T TF N++ LNQ +R LGK LGGVIFGCK++T+KECL QLF I+ ++ + + Y + D RT VQ+RL ++C L EEQFKPII DNY+ +NHFWFELDHAQ +L SLLSS+ IAP+T A Q TK R + +++ E + A DG+ D NH+ E +++ +E+ E D++Y+KLKE+ +R DP L+ ++D+V + +S +GL Q SE E + + S + S +AQL + +EEL FK EQ KM L+QKLV AETEIK LK RC+VLESR + VA + A E F +LD D++E ++L+GGYDG WLSALD+YSP D +KSL+PMNC R+Y+SVAR N E+YVFGGGN S+WY++ VESY PA WT RPSLN KGSL GAT+NNK+FA+GGGNG ES++DVEMLDLDVGRWI TRSM+ K
Sbjct: 1 MVAGRRTHTFTPNESSAFSPNQALNQNQAVNYRKLGKRHLGGVIFGCKSSTIKECLFKQLFGQLSTIQKLHGIFEAASPGQMNLNPYAWTTDGSERTVFPAQVQIRLGLRCHPLFEEQFKPIISDNYYTTNHFWFELDHAQASKLSSLLSSMAIAPSTFAPQNSTKWRALFQAPPSQDRVKEIEEPFKPRAFEAGWRPLDGAKLDA---NNHALEDSFEKQAVEKPE-DLIYLKLKELVLNRERSDPPLADIQDSVAVNELHSGQDGLSDAQTNSEGISEESLINSLEYPSVVAQLVQGMEELKVFKREQIHKMCCLEQKLVEAETEIKQLKQRCVVLESRLHPSVAHVEEMAVEPFNDLDLDLDELIFLVGGYDGASWLSALDSYSPSHDVIKSLKPMNCIRSYSSVARLNGELYVFGGGNGSLWYDS-----VESYDPASDHWTLRPSLNVQKGSLGGATLNNKIFAIGGGNGVESFADVEMLDLDVGRWIGTRSMLQK 492
HSP 2 Score: 72.7886 bits (177), Expect = 8.368e-11
Identity = 46/165 (27.88%), Postives = 76/165 (46.06%), Query Frame = 0
Query: 348 DINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTNLKAIGRRCFASA 512
++N +Y +GGYDG ++L + + + P + + MN R S+A N+++Y GG + S E V P VE + P +W +++ +G A + + L+ +E YKEGQGW++TNL+AIG R AS+
Sbjct: 500 ELNGALYAVGGYDGKEYLESAERFDPREHSWTKIASMNTKRGCHSMAILNEKLYAIGGYDGS---EMV--PSVEIFDPRLGSWMIGEPMDQSRGYSCAAVLKDSLY---------------------------------VERYKEGQGWEVTNLRAIGERTAASS 626
Match: A0A7J7GK30 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})
HSP 1 Score: 390.578 bits (1002), Expect = 2.186e-126
Identity = 239/525 (45.52%), Postives = 321/525 (61.14%), Query Frame = 0
Query: 1 MGAGRKTQTFVLNDNKIPILNQA--PYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRTW----VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQ-LTKERKIPLT--SQWREKGNEGFDTAVSNVDVAHSSSSDG-SPDDLVVDC---NHSFEAYSDRRTIEESEKDIMYMKLKEMAF--KRLDPSL-SVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
MG GR+TQ F+ N++ I NQA P + RNL K+ LGGVIFGCK +T+KECL QLF + Y+K+ N S R I Y + D RT VQVR+R+ C+ L EEQFK +I+DNY+ NHFWFELDHAQT +L+SLLSS+ +A +T + Q TK R + S R++ EG VD + +G D+ NH E ++ +E+ E+D++YMKLKE+A +R DP L VED +G +S H+GL + Q S+E+ + + S D S ++QL + +EEL AFK EQ KM YL+QKLV AE EI+ LK RC++LE S+ + D A E+ + + D++ +YL+GGY+G+ WLSALD+YSP D +KSL+PMN RAY S+A N E+YVFGGGN ++W +T VESY PA W RPSLN KGSLAGAT+NN++FA+GG NG + Y+DVEM DLDVGRWI +RSM+ K
Sbjct: 1 MGEGRRTQIFIPNESAPSIPNQATGPVNN-RNLSKNHLGGVIFGCKKSTIKECLFKQLFGLPAQHFSYVKNVDPGLPLFLFNYSDRKLHGIFEAASSGQMNINPYAWTTDGSERTLYPAQVQVRVRLHCRPLPEEQFKLVIIDNYYSQNHFWFELDHAQTSKLMSLLSSLAVASSTFSPQNTTKWRTLSQAPPSHDRKEEIEGLMPLALEVDFPYFYDGNGLGSSDVTTHLDRNNHPLEDCLVKQVVEK-EEDLIYMKLKELALNRQRSDPPLMDVEDIATVNGVHSRHKGLSEAQTNSDERNGQSLINSFDYPSVISQLMQGMEELNAFKIEQIHKMGYLEQKLVEAEIEIQELKQRCMMLECTSHPSAVRIDEMAMESVNDPELDLDGLIYLVGGYNGVSWLSALDSYSPTKDVIKSLKPMNHGRAYVSIAWLNGELYVFGGGNGNLWVDT-----VESYDPANNQWHLRPSLNGEKGSLAGATLNNRIFAMGGANGVDCYADVEMFDLDVGRWISSRSMLQK 518
HSP 2 Score: 50.0618 bits (118), Expect = 1.014e-3
Identity = 20/57 (35.09%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 349 INEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGG 405
+NE +Y+IGG+DG + +S+++ + P L + +P++ +R Y++ A + IY+FGG
Sbjct: 574 LNEKLYVIGGHDGNKMVSSMEIFDPRLGSWMVGEPISQSRGYSAAAVCKESIYIFGG 630
Match: F6GXS9 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})
HSP 1 Score: 386.341 bits (991), Expect = 6.333e-125
Identity = 228/502 (45.42%), Postives = 303/502 (60.36%), Query Frame = 0
Query: 29 RNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRTW----VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQ-----LTKERKIPLTSQWREKGNEGFDT-AVSNVDVAHSSSSD---GSPDDLVVDC----NHSFEAYSDRRTIEESEKDIMYMKLKEMA----FKRLDPSLSVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
RNL K LGGVIFGCKN+T+KECL QLF + +Y+K+ N S R I Y + D RT VQ+R+R+QCQ L EEQF+PII DNY+ +HFWFELDHAQ +LISLLSS +AP+ S Q T R +PL + K EG D+ S +D AHS D GS D V C N EA SD++ +E EK ++ +KL+E+ +K S VED+ V + + + +GL+K+Q + E++ E + V S D +AQL + EEL FK E Q+M Y++Q+L AE EI+ LK+ C++LES + ++ D T +E+F E++ D ++ ++L+GG DG WLS LD+YSP D KSL PM R+YASVA N E+Y+FGGGN S WY+T VE+Y+ WT R LN+ KGSLAGAT+N K+FALGGGNG E +SDV+M DLDVGRWIPTRSM+ K
Sbjct: 25 RNLRKGHLGGVIFGCKNSTIKECLFKQLFGLPAQHFLYVKNVDPGLPLFLFNYSDRKLHGIFEAASPGQMNINPYGWTTDGAERTLYPAQVQIRVRLQCQPLPEEQFRPIIADNYYSQSHFWFELDHAQASKLISLLSSRAVAPSASVPQNSAAWRTLFRPLPLCN----KKEEGEDSKPPSKIDSAHSDQLDRKLGSSD--VAPCLDESNLPLEASSDKQVVENDEKGLILLKLQELVLNREYKDSSSSSYVEDSAVVNDSHLDDKGLVKEQMVLEDRNEDSPVSSSDFHPVIAQLIR--EELKGFKAEYIQRMSYMEQRLADAEKEIQQLKEHCMMLESICSPSMSLVDQTVNESFDEMNMDPDDLIFLVGGCDGESWLSTLDSYSPSQDMKKSLSPMTMPRSYASVAVLNGELYIFGGGNGSEWYDT-----VEAYNLVSNEWTLRAPLNKEKGSLAGATLNGKIFALGGGNGIECFSDVDMFDLDVGRWIPTRSMLQK 513
HSP 2 Score: 90.8929 bits (224), Expect = 1.193e-16
Identity = 52/169 (30.77%), Postives = 83/169 (49.11%), Query Frame = 0
Query: 348 DINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGG--GNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTNLKAIGRRCFASAIV 514
++N +Y +GGYDG +L++++ P + + M R +V N+++Y GG GN V P VE Y P +W S+N+ +G A A VN ++ +GG E+ ++ +E Y+EG+GW++ AIG+RCFASAIV
Sbjct: 521 ELNGVLYAVGGYDGKDYLNSVERLDPREHSWTRIGGMKTKRGSHTVVVLNEKLYAMGGFDGNTMV-------PSVEIYDPRVDSWMDGDSMNQSRGYSAAAVVNKSIYVIGGVEDGEN-------------------VVGTVELYEEGEGWRVIKQTAIGKRCFASAIV 663
Match: A0A6A6M2A0 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})
HSP 1 Score: 380.563 bits (976), Expect = 2.113e-123
Identity = 236/537 (43.95%), Postives = 318/537 (59.22%), Query Frame = 0
Query: 1 MGAGRKTQTFVLN-DNKIP--ILNQAPYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSIYLFG----VDLELRTW-------------VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQLTKERKI---PLTSQWREKGNEGFDTAVSN--------VDVAHSSSSDGSPDDLVVDCNHSFEAYSDRRTIEESEKDIMYMKLKEMAFKRLDPSLSVEDNVVTDGE-NSEHEGLLKKQAISEEKL------EITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTEL--DPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKI 487
MGAG+ T T +N +P ++N ++ RNL KSQLGGVIFGCKN T+ ECL+ QLF + + Y+K+ N S R I+ ++++ W VQ+ +R+QC L E QFKPII DNY NHFWFELDHAQ +L+SL +S+ ++P+TS + T +I P++ R+ G E D+ V N VDV SS DG N E D IE+ EK+++ +L+E+A K LS+ D V N H L++++ SEE++ E ++ S D +AQL + +EEL FK EQ+ K+ YL+QKLV AE +I+ LKDRC++LES + V ++ AS+ F +L DP NE +YL+GGYDG WL ALD Y P D +KSL+PM+ RAYAS+AR N+EIY+FGGGN WY+TV ESY+PA WT RPSL +GSL GAT+N+K+FA+GGGNG E SDVEMLDL+VGRWIPTRSM+ K
Sbjct: 70 MGAGKNTTTVDINRSGPMPPNLVNSTAHA--RNLKKSQLGGVIFGCKNNTMNECLSKQLFGLPATHISYVKNIDPGLPLFLFNYSDRKLHGIFEAAGSGQMNIDPYGWTAGGSQRTQYPAQVQICVRLQCHPLPEVQFKPIIADNYHNRNHFWFELDHAQARKLMSLFASLAVSPSTSVSEDTANLRIIYQPVSLPQRDGGFETIDSEVQNHLDCKFDSVDV--SSCLDGK--------NWPLENQLDMNIIEQDEKNVILKQLQELASKHGANDLSLTDYVEDSAAINDNH---LEEKS-SEEQMGLGLRNEGSASASFDSQCIIAQLVQGMEELKVFKAEQTLKVYYLEQKLVDAEEQIQRLKDRCMMLESMCSPTVEHINDRASDTFDDLYKDP-TNESIYLVGGYDGQSWLPALDLYFPARDVLKSLKPMSTVRAYASIARLNNEIYIFGGGNGHSWYDTV-----ESYNPANDQWTLRPSLTGKRGSLGGATLNDKIFAVGGGNGLECLSDVEMLDLNVGRWIPTRSMLQKF 584
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YV65 | E-Value: 4.652e-139, PID: 48.58 | DCD domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5J4ZHV6 | E-Value: 6.368e-137, PID: 47.16 | DCD domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A2R6RXG4 | E-Value: 1.088e-133, PID: 46.37 | (Kelch-like protein {ECO:0000313|EMBL:PSS34725.1})[more] |
| A0A7J0E7F8 | E-Value: 4.214e-133, PID: 46.18 | DCD domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A834LDZ8 | E-Value: 1.230e-128, PID: 46.76 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7132... [more] |
| A0A2N9G9P6 | E-Value: 2.856e-127, PID: 43.84 | DCD domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6A4L620 | E-Value: 8.827e-127, PID: 48.50 | DCD domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A7J7GK30 | E-Value: 2.186e-126, PID: 45.52 | DCD domain-containing protein {ECO:0000259|PROSITE... [more] |
| F6GXS9 | E-Value: 6.333e-125, PID: 45.42 | DCD domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6A6M2A0 | E-Value: 2.113e-123, PID: 43.95 | DCD domain-containing protein {ECO:0000259|PROSITE... [more] |
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back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
