DCAR_018667

Resource Type: 
Polypeptide
Name: 
DCAR_018667
Identifier: 
DCAR_018667.mRNA-protein
Sequence: 
MGAGRKTQTFVLNDNKIPILNQAPYSGFRNLGKSQLGGVIFGCKNATLKE
CLNNQLFDMIRPEVIYLKSNMSIRYQSSIYLFGVDLELRTWVQVRLRVQC
QSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSAL
QLTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDCNH
SFEAYSDRRTIEESEKDIMYMKLKEMAFKRLDPSLSVEDNVVTDGENSEH
EGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKME
YLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDIN
EFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEI
YVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNN
KLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTN
LKAIGRRCFASAIVL*
Sequence Length: 
516
Sequence Checksum: 
b442a9f368890a54a374260e5b991efa
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_018667, derives from mRNA, DCAR_018667.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YV65 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222} (Fragment))

HSP 1 Score: 424.476 bits (1090), Expect = 4.652e-139
Identity = 257/529 (48.58%), Postives = 329/529 (62.19%), Query Frame = 0
 
Query:    1 MGAGRKTQTFVLNDNKIPILNQAPYSGF-RNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRTW----VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQLTKE-----RKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDG-SPDDLVVDC----NHSFEAYSDRRTIEESEKDIMYMKLKEMAFKRLDPSLS-----VEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
            MGAGR+TQ F+ N++     NQA  +   RNL KS LGGVIFGCKN T+KECL  QL  +      Y+K+          N S R    I             Y + +D   RT     VQ+R+R+ CQ+L E+QFKPII DNY+  NHFWFELDHAQT RL+SLLSS+ +AP++ A Q T +     R +P +   RE+ +EG       VD A+    +G S    V  C    N   EA  D++ +E+ E+D++YMKLKE+A  R + S S     VE+  V +  + EH+G L+ Q ISEEK E     S D    + QL + +EEL AFKTEQ QKM  L+QKLV AE EI+ LKDRC++LES SN  +   D T  E+  EL  D++E ++L+GGYDG+ WLSALD+YSP  D +KSL+PMN   +YASVA+FN E+YVFGGGN  +WY T     VESY+PA   WT  PSL   KGSLA AT+NNK+FA+GGGNG E +SDVEM D+DVG WI TRSM+HK
Sbjct:   38 MGAGRRTQNFLQNESAPSTPNQATDTACARNLRKSHLGGVIFGCKNGTIKECLFKQLLGLPAQHFSYVKNIDPGLPLFLFNYSDRKLHGIFEAASSGQMNINPYAWTMDGSERTQYPSQVQIRVRLHCQALIEDQFKPIIFDNYYSQNHFWFELDHAQTSRLMSLLSSLAVAPSSFAPQNTAKWRTLFRSLP-SPDMREE-SEGLKPPALEVDFAYCYKPNGKSGSSDVALCSDENNQLLEARLDQQVVEKDEEDLIYMKLKELALNR-ECSGSRLTNCVENTAVANDVHLEHQGFLEAQTISEEKNEENLANSFDYPFIITQLIQEMEELKAFKTEQIQKMGCLEQKLVEAEIEIRQLKDRCMMLESMSNPSIEPVDETVVESCNELHIDLDEVIFLVGGYDGVSWLSALDSYSPSQDVIKSLKPMNSFHSYASVAKFNGELYVFGGGNGCLWYNT-----VESYNPANNQWTLHPSLKEKKGSLASATLNNKIFAIGGGNGIECFSDVEMFDIDVGCWISTRSMLHK 558    

HSP 2 Score: 104.375 bits (259), Expect = 6.935e-21
Identity = 56/162 (34.57%), Postives = 81/162 (50.00%), Query Frame = 0
 
Query:  354 YLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTNLKAIGRRCFASAIVL 515
            Y IGGYDG  +L + + + P       ++ MN  R   S    N++IYV GG     +  T + P +E + P   TW +   +N+ +G  A A     ++ +GG    ++  D                    +ECY+EGQGWQ+TNLKAIG+RCF SAIVL
Sbjct:  572 YAIGGYDGKDYLKSAERFDPREHAWTRIESMNTKRGCHSSVVLNEKIYVLGG-----YDGTAMVPSIEIFDPRLGTWMTGEPMNQSRGYSAAAVFKESIYVIGGVKAGDNIVDT-------------------VECYEEGQGWQVTNLKAIGKRCFFSAIVL 709    
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZHV6 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})

HSP 1 Score: 417.542 bits (1072), Expect = 6.368e-137
Identity = 249/528 (47.16%), Postives = 331/528 (62.69%), Query Frame = 0
 
Query:    1 MGAGRKTQTFVLNDNKIPILNQAPYSGF-RNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRTW----VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQLTKERKI---PLTSQWREKGNEGFDTAVSNVDVAHS-------SSSDGSPDDLVVDCNHSFEAYSDRRTIEESEKDIMYMKLKEMAFKR----LDPSLSVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
            MGAG++TQTF+ N++     NQA  + + RNL KS LGGVIFGCKN T+KECL  QLF +      Y+K+          N S R    I             Y + +D   RT     VQVR+R+ CQ+L E+QFKPIIVDNY+  NHFWFELDHAQT +L+SLLSS+ +AP+T A Q T + +     L S    + +EGF      VD ++S        SSD +P   + + N   EA+  ++  E+ E+D++Y KLKE+A  R       +  VE+  V +  + +H+  L+   ISEEK E   + S D    + QL + +EEL AFKTEQ QK + L+QKLV AE EI+ LK+RC++LES SN  V   D T +E+  EL  D++E ++L+GGY+G  WLSALD+YSP  D +KS  PMN  R+YASVA+FN E+YVFGGG+  +WY+T     VESY+PA   WT  PS+N  KGSLAGAT+NNK+FA+GGGNG + +SDVEM D+DVGRWI TRSM+ K
Sbjct:    2 MGAGKRTQTFIANESAPSTPNQATGTAYARNLRKSHLGGVIFGCKNGTIKECLFKQLFGLPTQHFSYVKNIDPGLPLFLFNYSDRKLHGIFEAASSGQMNINSYAWTIDGSERTQYPAQVQVRVRLHCQALLEDQFKPIIVDNYYSQNHFWFELDHAQTSKLMSLLSSLAVAPSTFAPQNTAKWRTLFQTLPSPDMREESEGFKLPNLEVDFSYSYKPNGKLGSSDVAP--CIDENNQPLEAHLGQK--EKDEEDLIYTKLKELALNRECSGSRLTGGVEETAVANDVHMDHQCFLEPHTISEEKNEENLINSFDYPFIITQLIQEMEELKAFKTEQIQKTDCLEQKLVEAEIEIRQLKNRCMMLESMSNPSVEHVDETVTESCNELHIDLDEVIFLVGGYNGESWLSALDSYSPSRDVIKSFAPMNFIRSYASVAKFNGELYVFGGGHGCLWYDT-----VESYNPANNQWTLLPSMNEKKGSLAGATLNNKIFAIGGGNGVDCFSDVEMFDIDVGRWISTRSMLQK 520    

HSP 2 Score: 94.7449 bits (234), Expect = 7.035e-18
Identity = 53/162 (32.72%), Postives = 84/162 (51.85%), Query Frame = 0
 
Query:  354 YLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTNLKAIGRRCFASAIVL 515
            Y IGGYDG  +L +++ + P   T   ++ MN  R   S+A  N++IYV GG     +  T + P +E + P   +W +   +N+ +G  A A V   L+ +GG                    I   + +  +E Y+EG+GW++TNL+AIG+R + SAIVL
Sbjct:  534 YAIGGYDGKDYLKSVERFDPREHTWTRIEGMNTKRGCHSLAVLNEKIYVLGG-----YDGTAMVPSIEIFDPRLGSWMTGEPMNQSRGYSAAAVVKESLYIIGG-------------------VITDDNNVDTVERYEEGRGWEVTNLRAIGKRSYFSAIVL 671    
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RXG4 ((Kelch-like protein {ECO:0000313|EMBL:PSS34725.1}))

HSP 1 Score: 409.068 bits (1050), Expect = 1.088e-133
Identity = 243/524 (46.37%), Postives = 313/524 (59.73%), Query Frame = 0
 
Query:    1 MGAGRKTQTFVLNDNKIPILNQAPYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRT----WVQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIA----PNTSALQLTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDCN-------HSFEAYSDRRTIEESEKDIMYMKLKEMAFKRLDPSLSVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
            M AGR+TQT VLN++     N+A     RNL ++ LGGV+FGC N+T+ ECL  Q+F +      Y+K+          N S R    I             Y +  D   RT     VQ+ +R++CQ L EEQFKPII+DNY+  NHFWFELDHAQT +L+SLLS   IA    P  +A Q     + P +   +E+G +G       V++ HSS S  S      D         H  E   D++ +E+ E+D++YMKLKE+A  R    L + D  V D   +  E   + +   EEK E + V S D  S +AQL + +EEL  FK EQ  KM  L++KLV AE EI+ L  RC+ LES S   VA  D T  ++  +L+PD++E ++L+GGYDG  WLSALD+YSP  D +K+L PMN  R+YASVAR NDE YVFGGGN  +WY+T     VESY PA   WT RPSLN  KGSL GAT+NNK+FALGGGNG ES++DVEMLDLDVGRWI TRSM+ K
Sbjct:    1 MDAGRRTQTIVLNESAAFSPNKA--INHRNLTRNHLGGVVFGCTNSTINECLFKQVFGLPAQHFPYVKNIGPGLPLFLFNYSDRKLHGIFEAASSGKMNINPYAWTTDGTERTIFPAQVQIHIRLRCQPLPEEQFKPIIIDNYYSQNHFWFELDHAQTSKLMSLLSCRAIASSTVPPRNATQWRTLFQAPPSHDRKEEG-DGIKPPAFEVEIPHSSKSSKSNGSSSSDIATCLDSNIHPLENCLDKQVVEK-EEDLIYMKLKELALSRERSDLPLSD--VEDSAVTGQEAFSEARTNLEEKNEESLVSSCDYPSIIAQLIQEIEELQVFKIEQIHKMGCLEEKLVEAEIEIQQLNQRCIALESLSQPSVACVDETTMDSSNDLEPDLDELIFLVGGYDGGSWLSALDSYSPTHDVIKTLNPMNSIRSYASVARLNDEFYVFGGGNGCLWYDT-----VESYDPANNQWTLRPSLNVKKGSLGGATLNNKIFALGGGNGVESFADVEMLDLDVGRWIFTRSMLEK 513    

HSP 2 Score: 50.8322 bits (120), Expect = 5.199e-4
Identity = 21/57 (36.84%), Postives = 36/57 (63.16%), Query Frame = 0
 
Query:  349 INEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGG 405
            +NE +Y+IGG+DG   + +++ Y P L + +  +P+  +R Y+S A   D IY+ GG
Sbjct:  569 LNEKLYVIGGFDGSAMVPSIEIYDPRLGSWEMGEPIYQSRGYSSAAVLKDAIYILGG 625    
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0E7F8 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})

HSP 1 Score: 406.757 bits (1044), Expect = 4.214e-133
Identity = 242/524 (46.18%), Postives = 311/524 (59.35%), Query Frame = 0
 
Query:    1 MGAGRKTQTFVLNDNKIPILNQAPYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRT----WVQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIA----PNTSALQLTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDCN-------HSFEAYSDRRTIEESEKDIMYMKLKEMAFKRLDPSLSVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
            M AGR+TQT VLN++     N+A     RNL ++ LGGV+FGC N+T+ ECL  Q+F +      Y+K+          N S R    I             Y +  D   RT     VQ+ +R++CQ L EEQFKPII+DNY+  NHFWFELDHAQT +L+SLLS   IA    P  +A Q     + P +   +E+G +G       V++ HSS S  S      D         H  E   D++ +E+ E+D++YMKLKE+A  R    L + D  V D   +  E   + +   EEK E + V S D  S +AQL + +EEL  FK EQ  KM  L++KLV AE EI+ L  RC+ LES S   VA  D T  E+  +L+PD++E ++L+GGYDG  WLSALD+YSP  D +K+L PMN  R+YASVAR NDE YVFGGGN  +WY+T     VESY PA   WT RPSLN  KGSL GAT+NNK+FALGGGNG ES++DVEMLDLDVG W  TRSM+ K
Sbjct:    1 MDAGRRTQTIVLNESAAFSPNKA--INHRNLTRNHLGGVVFGCTNSTINECLFKQVFGLPAQHFPYVKNIGPGLPLFLFNYSDRKLHGIFEAASSGKMNINPYAWTTDGTERTVFPAQVQIHIRLRCQPLPEEQFKPIIIDNYYSQNHFWFELDHAQTSKLMSLLSCRAIASSTVPPRNATQWRTLFQAPPSHDRKEEG-DGIKPPAFEVEIPHSSKSSKSNGSSSSDIATCLDSNIHPLENCLDKQVVEK-EEDLIYMKLKELALSRERSDLPLSD--VEDSAVTGQEAFSEARTNLEEKNEESLVSSCDYPSIIAQLIQEIEELQVFKIEQIHKMGCLEEKLVEAEIEIQQLNQRCIALESLSQPSVACVDETTMESSNDLEPDLDELIFLVGGYDGGSWLSALDSYSPTHDVIKTLNPMNSIRSYASVARLNDEFYVFGGGNGCLWYDT-----VESYDPANNQWTLRPSLNVKKGSLGGATLNNKIFALGGGNGVESFADVEMLDLDVGHWFCTRSMLEK 513    

HSP 2 Score: 47.7506 bits (112), Expect = 4.840e-3
Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 0
 
Query:  348 DINEFM-YLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGG 405
            D N+++ Y+IGG+DG   + +++ Y P L + +  +P+  +R Y+S A   D IY+ GG
Sbjct:  533 DGNDYLKYVIGGFDGSAMVPSIEIYDPRLGSWEMGEPIYQSRGYSSAAVLKDSIYILGG 591    
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LDZ8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7132300.1}))

HSP 1 Score: 396.356 bits (1017), Expect = 1.230e-128
Identity = 245/524 (46.76%), Postives = 320/524 (61.07%), Query Frame = 0
 
Query:    1 MGAGRKTQTFVLNDNKI----PILNQAPYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKSNMSIRYQSSIYLFG-----------------VDLELRTW-------------VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQ-LTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDCNHSFEAYSDRRTIEESEKDIMYMKLKEMAF--KRLDPSLS-VEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
            M AGR+T TF  N++        LNQ     +R LGK  LGGVIFGCK++T+KECL  QLF +      Y+K   +I     ++LF                  ++L    W             VQ+RL ++C  L EEQFKPII DNY+ +NHFWFELDHAQ  +L SLLSS+ IAP+T A Q  TK R +       ++  E  +        A     DG+  D     NH  E   +++ +E+ E D++YMKLKE+    +R +P L+ ++D+   +  +S  EGL   Q  SE   E + + S D  S +AQL + +EEL  FK EQ  KM  L+QKLV AE+EIK LK RC+VLESR + +VA  +  A E F +LD D++E ++L+GGYDG  WLSALD+YSP  D +KSL+PMNC R+Y+SVAR N E+YVFGGGN S+WY++     VESY PA   WT RPSLN  KGSL GAT+NNK+FA+GGGNG ES++DVEMLDLDVGRWI TRSM+ K
Sbjct:    1 MVAGRRTHTFTPNESSAFSPNQALNQNQAVNYRKLGKRHLGGVIFGCKSSTIKECLFKQLFGLPAQHFCYVK---NIEPGMPLFLFNYTDRKLHGIFEAASPGQMNLNPYAWTTDGSERTVFPAQVQIRLGLRCHPLSEEQFKPIISDNYYTTNHFWFELDHAQASKLSSLLSSMAIAPSTFAPQNSTKWRALFQAPPSHDRAKEIEEPFKPQAFEAGWRPLDGATLDA---NNHGLEDSFEKQVVEKPE-DLIYMKLKELVCNRERSNPPLADIQDSAAVNELHSGQEGLSDAQTNSERISEESLINSLDYPSVVAQLVQGMEELKVFKREQIHKMCCLEQKLVEAESEIKQLKHRCVVLESRLHPFVAHVEEMAVEPFNDLDLDLDELIFLVGGYDGASWLSALDSYSPSHDVIKSLKPMNCIRSYSSVARLNGELYVFGGGNGSLWYDS-----VESYDPASDHWTLRPSLNVQKGSLGGATLNNKIFAIGGGNGVESFADVEMLDLDVGRWIGTRSMLQK 512    

HSP 2 Score: 94.3597 bits (233), Expect = 1.029e-17
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 0
 
Query:  348 DINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTNLKAIGRRCFASAIVL 515
            ++N  +Y +GGYDG  +L + + + P   +   +  MN  R   S+A  N+++Y  GG + S   E V  P VE + P   +W     +++ +G    A + + L+ +GG     S     ++D+              +E YKEGQGW++TNL+AIG RCF SAIVL
Sbjct:  520 ELNGALYAVGGYDGKDYLESAERFDPREHSWTKIASMNTKRGCHSMAVLNEKLYAIGGYDGS---EMV--PSVEIFDPRLGSWMIGEPMDQSRGYSCAAVLKDSLYVIGGVKPGGSEKHETIVDM--------------VERYKEGQGWEVTNLRAIGERCFFSAIVL 668    
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9G9P6 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})

HSP 1 Score: 393.275 bits (1009), Expect = 2.856e-127
Identity = 242/552 (43.84%), Postives = 314/552 (56.88%), Query Frame = 0
 
Query:    1 MGAGRKTQTFVLNDNKIPILNQAPYSG-FRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRTW----VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQ-LTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDC-----NHSFEAYSDRRTIEESEKDIMYMKLKEMAFK--------------------------------RLDPSLSVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
            MGAGRKTQTF +N++   +      S   RNL KSQLGGVIFGC+N+T+KECL  QLF +      Y+K+          N S R    I             Y +  D   RT     VQ+R+R++CQ L E QFKPII DNY+   HFWFELDHAQ  RL+SLLSS V+AP+T   Q  TK R I       + G EG       ++  HS+ S    D   V       N S E++ DR+ +E+ EKD+++MKLKE+A +                                 L  S  V+D  V +G   E +G   +    EEK E+    S    S +AQL + V+EL AF+TEQ QK   L+QKL+ AE EI+ LKD  ++LE  ++  V            E+  D NE ++L+GG+DG  WLSALD+Y P  D +KSL+PM+C R+Y+SVA+   E+YVFGGG+ S+WY+T     VESY  A   WTSRPSLN+ KGSLAGAT++NKLFA+GGGNG E +SDVEMLDLD+GRWI TRSM+ K
Sbjct:    1 MGAGRKTQTFPINEHAPSLPKTVKSSATARNLMKSQLGGVIFGCRNSTIKECLFKQLFGLPAQHSSYVKNIDPGLPLFLFNYSDRRLHGIFEAASAGQMNINPYGWTTDGSERTLYPAQVQIRVRLRCQPLLENQFKPIIADNYYTQTHFWFELDHAQAIRLMSLLSSSVVAPSTYVPQNTTKWRTIFQALPPNDAGEEGEGFKPLALETEHSNHSSLKSDSADVASSFDGDNQSLESHLDRKLVEQDEKDVIFMKLKELALQPMSSDSHGTASPCKNKVEGQVVGSRPIEIEEFALPMSGFVDDTTVLNGIQLEEKGFQVEPMGVEEKNEVCLHSSSKCQSIIAQLIQEVQELKAFRTEQIQKTSILEQKLMEAEMEIQQLKDYRVMLEPVADPSV---------VLDEVHLDHNESIFLVGGFDGETWLSALDSYYPSQDVIKSLRPMSCVRSYSSVAQLKGELYVFGGGDGSLWYDT-----VESYSLANDLWTSRPSLNQEKGSLAGATIDNKLFAIGGGNGVECFSDVEMLDLDIGRWISTRSMLQK 538    

HSP 2 Score: 80.8777 bits (198), Expect = 1.908e-13
Identity = 51/175 (29.14%), Postives = 79/175 (45.14%), Query Frame = 0
 
Query:  342 FTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQ-LTNLKAIGRRCFASAIVL 515
            F     ++N  +Y  GG+DG  +L + + + P   +   +  MN  R   S+   N+++Y  GG + S      + P VE + P   +WT    +   +G  A   V   +  +GG              + VG      +++  IE YKEGQGWQ +     IG+RCF SAIVL
Sbjct:  540 FAVAAAELNGVLYATGGFDGKDYLMSAERFDPREHSWTKIASMNKKRGSHSLVVLNEKLYALGGYDGS-----TMVPSVEIFDPRLGSWTIGEPMKNPRGYFAAGAVKESICVIGG--------------IRVG-----ENIVDTIETYKEGQGWQEIHTSTTIGKRCFLSAIVL 690    
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4L620 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222} (Fragment))

HSP 1 Score: 394.815 bits (1013), Expect = 8.827e-127
Identity = 243/501 (48.50%), Postives = 319/501 (63.67%), Query Frame = 0
 
Query:    1 MGAGRKTQTFVLNDNKI----PILNQAPYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLF---DMIRPEVIYLKSNMSIRYQSSIYLFGVDLELRT----WVQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQ-LTKERKIPLTSQWREKGNEGFDTAVSNVDVAHSSSSDGSPDDLVVDCNHSFEAYSDRRTIEESEKDIMYMKLKEMAF--KRLDPSLS-VEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
            M AGR+T TF  N++        LNQ     +R LGK  LGGVIFGCK++T+KECL  QLF     I+      ++    +   + Y +  D   RT     VQ+RL ++C  L EEQFKPII DNY+ +NHFWFELDHAQ  +L SLLSS+ IAP+T A Q  TK R +      +++  E  +        A     DG+  D     NH+ E   +++ +E+ E D++Y+KLKE+    +R DP L+ ++D+V  +  +S  +GL   Q  SE   E + + S +  S +AQL + +EEL  FK EQ  KM  L+QKLV AETEIK LK RC+VLESR +  VA  +  A E F +LD D++E ++L+GGYDG  WLSALD+YSP  D +KSL+PMNC R+Y+SVAR N E+YVFGGGN S+WY++     VESY PA   WT RPSLN  KGSL GAT+NNK+FA+GGGNG ES++DVEMLDLDVGRWI TRSM+ K
Sbjct:    1 MVAGRRTHTFTPNESSAFSPNQALNQNQAVNYRKLGKRHLGGVIFGCKSSTIKECLFKQLFGQLSTIQKLHGIFEAASPGQMNLNPYAWTTDGSERTVFPAQVQIRLGLRCHPLFEEQFKPIISDNYYTTNHFWFELDHAQASKLSSLLSSMAIAPSTFAPQNSTKWRALFQAPPSQDRVKEIEEPFKPRAFEAGWRPLDGAKLDA---NNHALEDSFEKQAVEKPE-DLIYLKLKELVLNRERSDPPLADIQDSVAVNELHSGQDGLSDAQTNSEGISEESLINSLEYPSVVAQLVQGMEELKVFKREQIHKMCCLEQKLVEAETEIKQLKQRCVVLESRLHPSVAHVEEMAVEPFNDLDLDLDELIFLVGGYDGASWLSALDSYSPSHDVIKSLKPMNCIRSYSSVARLNGELYVFGGGNGSLWYDS-----VESYDPASDHWTLRPSLNVQKGSLGGATLNNKIFAIGGGNGVESFADVEMLDLDVGRWIGTRSMLQK 492    

HSP 2 Score: 72.7886 bits (177), Expect = 8.368e-11
Identity = 46/165 (27.88%), Postives = 76/165 (46.06%), Query Frame = 0
 
Query:  348 DINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTNLKAIGRRCFASA 512
            ++N  +Y +GGYDG ++L + + + P   +   +  MN  R   S+A  N+++Y  GG + S   E V  P VE + P   +W     +++ +G    A + + L+                                 +E YKEGQGW++TNL+AIG R  AS+
Sbjct:  500 ELNGALYAVGGYDGKEYLESAERFDPREHSWTKIASMNTKRGCHSMAILNEKLYAIGGYDGS---EMV--PSVEIFDPRLGSWMIGEPMDQSRGYSCAAVLKDSLY---------------------------------VERYKEGQGWEVTNLRAIGERTAASS 626    
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GK30 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})

HSP 1 Score: 390.578 bits (1002), Expect = 2.186e-126
Identity = 239/525 (45.52%), Postives = 321/525 (61.14%), Query Frame = 0
 
Query:    1 MGAGRKTQTFVLNDNKIPILNQA--PYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRTW----VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQ-LTKERKIPLT--SQWREKGNEGFDTAVSNVDVAHSSSSDG-SPDDLVVDC---NHSFEAYSDRRTIEESEKDIMYMKLKEMAF--KRLDPSL-SVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
            MG GR+TQ F+ N++   I NQA  P +  RNL K+ LGGVIFGCK +T+KECL  QLF +      Y+K+          N S R    I             Y +  D   RT     VQVR+R+ C+ L EEQFK +I+DNY+  NHFWFELDHAQT +L+SLLSS+ +A +T + Q  TK R +     S  R++  EG       VD  +    +G    D+       NH  E    ++ +E+ E+D++YMKLKE+A   +R DP L  VED    +G +S H+GL + Q  S+E+   + + S D  S ++QL + +EEL AFK EQ  KM YL+QKLV AE EI+ LK RC++LE  S+    + D  A E+  + + D++  +YL+GGY+G+ WLSALD+YSP  D +KSL+PMN  RAY S+A  N E+YVFGGGN ++W +T     VESY PA   W  RPSLN  KGSLAGAT+NN++FA+GG NG + Y+DVEM DLDVGRWI +RSM+ K
Sbjct:    1 MGEGRRTQIFIPNESAPSIPNQATGPVNN-RNLSKNHLGGVIFGCKKSTIKECLFKQLFGLPAQHFSYVKNVDPGLPLFLFNYSDRKLHGIFEAASSGQMNINPYAWTTDGSERTLYPAQVQVRVRLHCRPLPEEQFKLVIIDNYYSQNHFWFELDHAQTSKLMSLLSSLAVASSTFSPQNTTKWRTLSQAPPSHDRKEEIEGLMPLALEVDFPYFYDGNGLGSSDVTTHLDRNNHPLEDCLVKQVVEK-EEDLIYMKLKELALNRQRSDPPLMDVEDIATVNGVHSRHKGLSEAQTNSDERNGQSLINSFDYPSVISQLMQGMEELNAFKIEQIHKMGYLEQKLVEAEIEIQELKQRCMMLECTSHPSAVRIDEMAMESVNDPELDLDGLIYLVGGYNGVSWLSALDSYSPTKDVIKSLKPMNHGRAYVSIAWLNGELYVFGGGNGNLWVDT-----VESYDPANNQWHLRPSLNGEKGSLAGATLNNRIFAMGGANGVDCYADVEMFDLDVGRWISSRSMLQK 518    

HSP 2 Score: 50.0618 bits (118), Expect = 1.014e-3
Identity = 20/57 (35.09%), Postives = 39/57 (68.42%), Query Frame = 0
 
Query:  349 INEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGG 405
            +NE +Y+IGG+DG + +S+++ + P L +    +P++ +R Y++ A   + IY+FGG
Sbjct:  574 LNEKLYVIGGHDGNKMVSSMEIFDPRLGSWMVGEPISQSRGYSAAAVCKESIYIFGG 630    
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6GXS9 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})

HSP 1 Score: 386.341 bits (991), Expect = 6.333e-125
Identity = 228/502 (45.42%), Postives = 303/502 (60.36%), Query Frame = 0
 
Query:   29 RNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSI-------------YLFGVDLELRTW----VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQ-----LTKERKIPLTSQWREKGNEGFDT-AVSNVDVAHSSSSD---GSPDDLVVDC----NHSFEAYSDRRTIEESEKDIMYMKLKEMA----FKRLDPSLSVEDNVVTDGENSEHEGLLKKQAISEEKLEITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTELDPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHK 486
            RNL K  LGGVIFGCKN+T+KECL  QLF +     +Y+K+          N S R    I             Y +  D   RT     VQ+R+R+QCQ L EEQF+PII DNY+  +HFWFELDHAQ  +LISLLSS  +AP+ S  Q      T  R +PL +    K  EG D+   S +D AHS   D   GS D  V  C    N   EA SD++ +E  EK ++ +KL+E+     +K    S  VED+ V +  + + +GL+K+Q + E++ E + V S D    +AQL +  EEL  FK E  Q+M Y++Q+L  AE EI+ LK+ C++LES  +  ++  D T +E+F E++ D ++ ++L+GG DG  WLS LD+YSP  D  KSL PM   R+YASVA  N E+Y+FGGGN S WY+T     VE+Y+     WT R  LN+ KGSLAGAT+N K+FALGGGNG E +SDV+M DLDVGRWIPTRSM+ K
Sbjct:   25 RNLRKGHLGGVIFGCKNSTIKECLFKQLFGLPAQHFLYVKNVDPGLPLFLFNYSDRKLHGIFEAASPGQMNINPYGWTTDGAERTLYPAQVQIRVRLQCQPLPEEQFRPIIADNYYSQSHFWFELDHAQASKLISLLSSRAVAPSASVPQNSAAWRTLFRPLPLCN----KKEEGEDSKPPSKIDSAHSDQLDRKLGSSD--VAPCLDESNLPLEASSDKQVVENDEKGLILLKLQELVLNREYKDSSSSSYVEDSAVVNDSHLDDKGLVKEQMVLEDRNEDSPVSSSDFHPVIAQLIR--EELKGFKAEYIQRMSYMEQRLADAEKEIQQLKEHCMMLESICSPSMSLVDQTVNESFDEMNMDPDDLIFLVGGCDGESWLSTLDSYSPSQDMKKSLSPMTMPRSYASVAVLNGELYIFGGGNGSEWYDT-----VEAYNLVSNEWTLRAPLNKEKGSLAGATLNGKIFALGGGNGIECFSDVDMFDLDVGRWIPTRSMLQK 513    

HSP 2 Score: 90.8929 bits (224), Expect = 1.193e-16
Identity = 52/169 (30.77%), Postives = 83/169 (49.11%), Query Frame = 0
 
Query:  348 DINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGG--GNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKIECYKEGQGWQLTNLKAIGRRCFASAIV 514
            ++N  +Y +GGYDG  +L++++   P   +   +  M   R   +V   N+++Y  GG  GN  V       P VE Y P   +W    S+N+ +G  A A VN  ++ +GG    E+                   ++  +E Y+EG+GW++    AIG+RCFASAIV
Sbjct:  521 ELNGVLYAVGGYDGKDYLNSVERLDPREHSWTRIGGMKTKRGSHTVVVLNEKLYAMGGFDGNTMV-------PSVEIYDPRVDSWMDGDSMNQSRGYSAAAVVNKSIYVIGGVEDGEN-------------------VVGTVELYEEGEGWRVIKQTAIGKRCFASAIV 663    
BLAST of DCAR_018667 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6M2A0 (DCD domain-containing protein {ECO:0000259|PROSITE:PS51222})

HSP 1 Score: 380.563 bits (976), Expect = 2.113e-123
Identity = 236/537 (43.95%), Postives = 318/537 (59.22%), Query Frame = 0
 
Query:    1 MGAGRKTQTFVLN-DNKIP--ILNQAPYSGFRNLGKSQLGGVIFGCKNATLKECLNNQLFDMIRPEVIYLKS----------NMSIRYQSSIYLFG----VDLELRTW-------------VQVRLRVQCQSLHEEQFKPIIVDNYFKSNHFWFELDHAQTDRLISLLSSVVIAPNTSALQLTKERKI---PLTSQWREKGNEGFDTAVSN--------VDVAHSSSSDGSPDDLVVDCNHSFEAYSDRRTIEESEKDIMYMKLKEMAFKRLDPSLSVEDNVVTDGE-NSEHEGLLKKQAISEEKL------EITSVKSQDDLSGLAQLTKRVEELTAFKTEQSQKMEYLQQKLVHAETEIKCLKDRCLVLESRSNTYVAKGDNTASEAFTEL--DPDINEFMYLIGGYDGLQWLSALDTYSPLLDTVKSLQPMNCARAYASVARFNDEIYVFGGGNCSVWYETVLEPLVESYHPARKTWTSRPSLNRVKGSLAGATVNNKLFALGGGNGHESYSDVEMLDLDVGRWIPTRSMIHKI 487
            MGAG+ T T  +N    +P  ++N   ++  RNL KSQLGGVIFGCKN T+ ECL+ QLF +    + Y+K+          N S R    I+       ++++   W             VQ+ +R+QC  L E QFKPII DNY   NHFWFELDHAQ  +L+SL +S+ ++P+TS  + T   +I   P++   R+ G E  D+ V N        VDV  SS  DG         N   E   D   IE+ EK+++  +L+E+A K     LS+ D V      N  H   L++++ SEE++      E ++  S D    +AQL + +EEL  FK EQ+ K+ YL+QKLV AE +I+ LKDRC++LES  +  V   ++ AS+ F +L  DP  NE +YL+GGYDG  WL ALD Y P  D +KSL+PM+  RAYAS+AR N+EIY+FGGGN   WY+TV     ESY+PA   WT RPSL   +GSL GAT+N+K+FA+GGGNG E  SDVEMLDL+VGRWIPTRSM+ K 
Sbjct:   70 MGAGKNTTTVDINRSGPMPPNLVNSTAHA--RNLKKSQLGGVIFGCKNNTMNECLSKQLFGLPATHISYVKNIDPGLPLFLFNYSDRKLHGIFEAAGSGQMNIDPYGWTAGGSQRTQYPAQVQICVRLQCHPLPEVQFKPIIADNYHNRNHFWFELDHAQARKLMSLFASLAVSPSTSVSEDTANLRIIYQPVSLPQRDGGFETIDSEVQNHLDCKFDSVDV--SSCLDGK--------NWPLENQLDMNIIEQDEKNVILKQLQELASKHGANDLSLTDYVEDSAAINDNH---LEEKS-SEEQMGLGLRNEGSASASFDSQCIIAQLVQGMEELKVFKAEQTLKVYYLEQKLVDAEEQIQRLKDRCMMLESMCSPTVEHINDRASDTFDDLYKDP-TNESIYLVGGYDGQSWLPALDLYFPARDVLKSLKPMSTVRAYASIARLNNEIYIFGGGNGHSWYDTV-----ESYNPANDQWTLRPSLTGKRGSLGGATLNDKIFAVGGGNGLECLSDVEMLDLNVGRWIPTRSMLQKF 584    
Match NameStatsDescription
A0A5B6YV65E-Value: 4.652e-139, PID: 48.58DCD domain-containing protein {ECO:0000259|PROSITE... [more]
A0A5J4ZHV6E-Value: 6.368e-137, PID: 47.16DCD domain-containing protein {ECO:0000259|PROSITE... [more]
A0A2R6RXG4E-Value: 1.088e-133, PID: 46.37(Kelch-like protein {ECO:0000313|EMBL:PSS34725.1})[more]
A0A7J0E7F8E-Value: 4.214e-133, PID: 46.18DCD domain-containing protein {ECO:0000259|PROSITE... [more]
A0A834LDZ8E-Value: 1.230e-128, PID: 46.76(Uncharacterized protein {ECO:0000313|EMBL:KAF7132... [more]
A0A2N9G9P6E-Value: 2.856e-127, PID: 43.84DCD domain-containing protein {ECO:0000259|PROSITE... [more]
A0A6A4L620E-Value: 8.827e-127, PID: 48.50DCD domain-containing protein {ECO:0000259|PROSITE... [more]
A0A7J7GK30E-Value: 2.186e-126, PID: 45.52DCD domain-containing protein {ECO:0000259|PROSITE... [more]
F6GXS9E-Value: 6.333e-125, PID: 45.42DCD domain-containing protein {ECO:0000259|PROSITE... [more]
A0A6A6M2A0E-Value: 2.113e-123, PID: 43.95DCD domain-containing protein {ECO:0000259|PROSITE... [more]

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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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