MALSIAMIVFLVIQKPVAGFFNERTHIVLWTSLPGISVPYRIWSSIQRFS
VNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGT
HYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSSSGKDMSDDAVTTH
IVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKS
AYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV
RGR*
| Relationships |
|---|
| The polypeptide, DCAR_017804, derives from mRNA, DCAR_017804. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5J4ZW40 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523005.1}))
HSP 1 Score: 192.971 bits (489), Expect = 7.836e-58
Identity = 106/253 (41.90%), Postives = 142/253 (56.13%), Query Frame = 0
Query: 3 LSIAMIVFLVIQKPVAGFFNERTHIVL----WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEV-TKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSSSGKDMSDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
L +A+++ +V+ + ++TH+V W PG V Y W+++Q F+V D +VF F G A V TKE +D CN T + +E PA F L SVG +Y+ICT+ HC +GQK+AI V ++ A T++VGD+ GW GGA Y WASN+ F+VGD LVF FVN QDVA+V KSAY+ CDT + I V SPA + L + G HYFT T P C GQQL +NV
Sbjct: 5 LGLAVVILVVLAALLQTTVAQKTHVVGDNLGWLVPPGGPVAYTTWAAMQTFTVGDILVFNFTTGNQDVARVLTKEAFDTCNSTSPMWLETTGPANFTLSSVGEYYFICTMDRHCPLGQKLAINVTGSSGPAPPP--------VPAPPRAPVTYVVGDKLGWLVPPGGAIAYATWASNKTFIVGDTLVFDFVNGTQDVAVVTKSAYKTCDTNNT-ITVLTNSPAKITLTTTGEHYFTCTYPRHCTLGQQLAINV 248
HSP 2 Score: 84.7297 bits (208), Expect = 1.195e-16
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 0
Query: 149 THIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVA-LVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNVRG 252
TH+VGD GW GG Y WA+ + F VGD+LVF F QDVA ++ K A++ C++ S + + T PA L+S G +YF T C GQ+L +NV G
Sbjct: 27 THVVGDNLGWLVPPGGPVAYTTWAAMQTFTVGDILVFNFTTGNQDVARVLTKEAFDTCNS-TSPMWLETTGPANFTLSSVGEYYFICTMDRHCPLGQKLAINVTG 130
Match: A0A5J4ZYM5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523004.1}))
HSP 1 Score: 192.2 bits (487), Expect = 7.935e-58
Identity = 108/260 (41.54%), Postives = 145/260 (55.77%), Query Frame = 0
Query: 1 MALSIAMIVFLVIQKPVAGFFNERTHIVL----WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSS---SGKDMSDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPAT-VILNSAGYHYFTTTNPLMCDFGQQLVVNVRG 252
M + + M+V ++Q+ A + T++V WT PG V Y W+S+ F+V D +VF FP G+H EVT+ +D CN T ISI PA L S+G HYYICT HC +GQK+AI V T+ P P S + A T++VGD GW GG Y+ W N++F+VGD LVFKF+N +VA V K+AYE+C+T + T+ T +IL S G H+FT T P C FGQQL +NV G
Sbjct: 9 MIVFMVMVVAALLQRSEA----QTTYVVGDALDWTVPPGGPVAYTTWASMHTFTVGDVLVFNFPTGIHNVVEVTRAAFDACNFTSPISISNTGPANITLNSIGEHYYICTFTRHCDLGQKIAINVSATSASTTPQPTPSLSPQTTPTPTPSKAPKTYVVGDNLGWIVPPGGPIAYQTWTYNKMFVVGDTLVFKFLNGTHNVAEVTKTAYESCNTTTTTTLSLTTTSPTKIILTSPGEHFFTCTFPRHCYFGQQLAINVTG 264
HSP 2 Score: 67.781 bits (164), Expect = 1.190e-10
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 0
Query: 30 WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFN--LESVGTHYYICTVAGHCRMGQKVAITVPDT 124
W PG + Y+ W+ + F V D +VF F G H AEVTK Y++CN T ++ + + L S G H++ CT HC GQ++AI V T
Sbjct: 169 WIVPPGGPIAYQTWTYNKMFVVGDTLVFKFLNGTHNVAEVTKTAYESCNTTTTTTLSLTTTSPTKIILTSPGEHFFTCTFPRHCYFGQQLAINVTGT 265
Match: B9SMH4 ((Early nodulin 16, putative {ECO:0000313|EMBL:EEF35206.1}))
HSP 1 Score: 189.119 bits (479), Expect = 2.505e-56
Identity = 99/221 (44.80%), Postives = 134/221 (60.63%), Query Frame = 0
Query: 30 WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSSSGKDMSDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
W PG + Y W++I F+V D +VF F G A VTKE Y CN T I+++ PA F L++ G +++I T+ HC +GQ++AI V TAP +P P ++ + + A T+ VGD GW GGA Y WA N+ F+VGDVLVF FV+ LQDVALV K AYE C+T S I V+ TSPA ++LN+ G ++FT+T P C GQQL + V
Sbjct: 34 WLVPPGGDLAYATWAAINTFTVGDVLVFNFTTGQQDVARVTKEAYLFCNSTNPIALKTTGPANFTLDTTGAYFFISTMDKHCPLGQRLAIYV--TAPGPYPSPGP-HTAPSPVPNRAPVTYTVGDGMGWIVPPGGALAYMTWAYNKTFIVGDVLVFNFVDGLQDVALVTKEAYETCNT-NSTIQVWSTSPANILLNATGDYFFTSTYPNRCILGQQLAIRV 250
HSP 2 Score: 78.5666 bits (192), Expect = 2.073e-14
Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 0
Query: 149 THIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
T +VGD GW GG Y WA+ F VGDVLVF F QDVA V K AY C++ IA+ T PA L++ G ++F +T C GQ+L + V
Sbjct: 25 TLVVGDGLGWLVPPGGDLAYATWAAINTFTVGDVLVFNFTTGQQDVARVTKEAYLFCNSTNP-IALKTTGPANFTLDTTGAYFFISTMDKHCPLGQRLAIYV 125
Match: A0A6P3YUV9 ((blue copper protein-like {ECO:0000313|RefSeq:XP_015865724.1}))
HSP 1 Score: 188.734 bits (478), Expect = 2.688e-56
Identity = 102/224 (45.54%), Postives = 131/224 (58.48%), Query Frame = 0
Query: 30 WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSSSGKDMSDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNVRGR 253
W PG + Y+IW+ Q F+V D +VF F G A VTKE + NCN T+ IS++A SPA F L + G +Y+I T HC +GQK+AI V + +P+P SG T+ VGD+ GW GG Y AWA ++IFLVGD LVF FVN QDVA+V K Y+NC S I VY TSPA + L + G HYFT+T C GQ+L +NV G+
Sbjct: 35 WLVPPGGPIAYQIWADAQTFTVGDILVFNFTDGEQDVAWVTKEAFKNCNSTDPISLKATSPANFTLNTTGEYYFISTKDRHCWLGQKLAINVTEYPGP---SPSPTPRSGP-------VTYTVGDDLGWLVPPGGELFYAAWAYDKIFLVGDTLVFNFVNGSQDVAVVTKDNYKNC--TNSTIEVYTTSPANITLTTIGEHYFTSTYERHCFLGQKLAINVTGK 246
HSP 2 Score: 95.5153 bits (236), Expect = 1.382e-20
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 0
Query: 146 AVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
A TTH VGD+ GW GG Y+ WA + F VGD+LVF F + QDVA V K A++NC++ I++ TSPA LN+ G +YF +T C GQ+L +NV
Sbjct: 23 AQTTHYVGDDLGWLVPPGGPIAYQIWADAQTFTVGDILVFNFTDGEQDVAWVTKEAFKNCNSTD-PISLKATSPANFTLNTTGEYYFISTKDRHCWLGQKLAINV 126
Match: W9SB32 ((Blue copper protein {ECO:0000313|EMBL:EXB96874.1}))
HSP 1 Score: 186.422 bits (472), Expect = 1.670e-55
Identity = 103/232 (44.40%), Postives = 133/232 (57.33%), Query Frame = 0
Query: 23 ERTHIVL----WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSSSGKDMSDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
+ TH V W PG ++ Y IW++ Q F D +VF F G A+VTKE ++ CN T IS++ SPA F L+++G +Y+I T GHC+ GQK+A V T AP TT+IVGD+ GW GG YK WA +IF VGD LVF FVN DVA+V KS YENC TK IAVYK +PA + L S G H+FT+T C++GQ+L +NV
Sbjct: 24 QNTHTVGDDLGWVVPPGGNITYEIWAASQIFLAGDILVFNFSDGDQDVAKVTKEAFNTCNSTNPISLKTKSPANFTLDTIGEYYFIGTKDGHCKSGQKLAFNV---------TSAP-----------GNTTYIVGDDLGWYIPPGGEVYYKTWAYGKIFTVGDTLVFNFVNGSDDVAVVTKSVYENC-TKNDTIAVYKATPANITLKSTGEHFFTSTYNKHCEWGQKLAINV 234
HSP 2 Score: 87.0409 bits (214), Expect = 1.288e-17
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 0
Query: 146 AVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
A TH VGD+ GW GG Y+ WA+++IFL GD+LVF F + QDVA V K A+ C++ + I++ SPA L++ G +YF T C GQ+L NV
Sbjct: 23 AQNTHTVGDDLGWVVPPGGNITYEIWAASQIFLAGDILVFNFSDGDQDVAKVTKEAFNTCNS-TNPISLKTKSPANFTLDTIGEYYFIGTKDGHCKSGQKLAFNV 126
Match: A0A540MEN7 ((Uncharacterized protein {ECO:0000313|EMBL:TQD97208.1}))
HSP 1 Score: 186.808 bits (473), Expect = 1.769e-55
Identity = 102/233 (43.78%), Postives = 137/233 (58.80%), Query Frame = 0
Query: 23 ERTHIVL----WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSSSGKDMSDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQ-DVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
++TH+V W PG + Y W++ Q F+V D +VF F G A VT+E ++ CN T+ I + SPA F L++ G +Y+I T HC++GQK+AI V TA P+P SG T++VGD+ GW GG Y+AWA + F+VGD LVF FVN Q DVA V KSAYENC T S IAVYK SP +++LN+ G H+F +T C GQ+L +NV
Sbjct: 24 QKTHVVGELLGWLVPPGGNYTYETWAATQHFAVGDLLVFNFTDGDQDVARVTREAFNKCNSTDPIKLLTTSPANFTLDTTGEYYFIGTKDKHCQLGQKLAINV--TAEHVSPAPSPAPRSGP-------VTYVVGDKLGWLVLPGGEYAYEAWAYGKTFIVGDTLVFNFVNGTQDDVATVTKSAYENC-TTNSTIAVYKNSPVSILLNTTGEHFFISTYDRRCLLGQKLAINV 246
HSP 2 Score: 86.6557 bits (213), Expect = 2.144e-17
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 0
Query: 143 SDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
S A TH+VG+ GW GG Y+ WA+ + F VGD+LVF F + QDVA V + A+ C++ I + TSPA L++ G +YF T C GQ+L +NV
Sbjct: 20 STAAQKTHVVGELLGWLVPPGGNYTYETWAATQHFAVGDLLVFNFTDGDQDVARVTREAFNKCNSTDP-IKLLTTSPANFTLDTTGEYYFIGTKDKHCQLGQKLAINV 126
Match: M5W9M7 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ03485.1}))
HSP 1 Score: 186.808 bits (473), Expect = 1.991e-55
Identity = 98/232 (42.24%), Postives = 133/232 (57.33%), Query Frame = 0
Query: 23 ERTHIVL----WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSSSGKDMSDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
++TH+V W PG + Y W+ Q F+V D +VF F G A VTKE + CN T ++++ SPA F L+++G +Y+I T C +GQK+AI V +PAP SS + T++VGD FGW GG Y WA + F VGD LVF F N QDVA+V KSAYENC T + IAVY SP +++LN++G H+FT+T C GQ+L +NV
Sbjct: 24 QQTHVVGDKFGWLVPPGGAYAYEAWAETQTFAVGDILVFNFTNGDQDVARVTKEAFKTCNSTNPLTLKTTSPANFTLDTIGEYYFIGTKDKRCELGQKLAINVTAEHGSPTPSPAPKSSP----APRGAVTYVVGDHFGWIVPPGGELAYATWAYGKTFYVGDTLVFNFANDTQDVAVVTKSAYENCTTNNT-IAVYSKSPVSILLNTSGEHFFTSTYDRHCVLGQKLAINV 250
HSP 2 Score: 99.7525 bits (247), Expect = 4.193e-22
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 0
Query: 143 SDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
S A TH+VGD+FGW GGA Y+AWA + F VGD+LVF F N QDVA V K A++ C++ + + + TSPA L++ G +YF T C+ GQ+L +NV
Sbjct: 20 STAAQQTHVVGDKFGWLVPPGGAYAYEAWAETQTFAVGDILVFNFTNGDQDVARVTKEAFKTCNS-TNPLTLKTTSPANFTLDTIGEYYFIGTKDKRCELGQKLAINV 126
Match: A0A218W081 ((blue copper protein-like {ECO:0000313|RefSeq:XP_031388415.1}))
HSP 1 Score: 188.348 bits (477), Expect = 2.064e-55
Identity = 107/250 (42.80%), Postives = 140/250 (56.00%), Query Frame = 0
Query: 30 WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITV---PDT------------------------APKQLATPAPVSSSGKDMSDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNVRG 252
WT PG SV Y W++ + FSV D +VF + G H A+VTKE YDNCN T +S+E P L+S G HY+ICT + HC +GQK+A+ V P + P A PAP +++ A T+ VGD GW+ GGA+ Y+ WASN+ F+VGDVLVF FVN +VA V K+AY++C+T S I++ SP V LN+AG HYFT T P C GQQL + V G
Sbjct: 35 WTIPPGGSVAYTAWAANKSFSVGDTLVFNYTTGQHDVAKVTKEAYDNCNATNPMSLETNGPTNMRLDSAGEHYFICTFSSHCNIGQKLAVNVTAGPGSAPAPAPGTPATPPPASAPAPATPSTPPPAAAPAPGTAAPTPAPSRAPLTYTVGDGLGWNVPPGGAAAYQTWASNKTFMVGDVLVFNFVNGTHNVAEVTKAAYDSCNT-SSTISLLTNSPVRVTLNTAGEHYFTCTFPRHCTLGQQLTITVSG 283
Match: A0A6A6MBI7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2310624.1}))
HSP 1 Score: 185.267 bits (469), Expect = 8.408e-55
Identity = 94/221 (42.53%), Postives = 129/221 (58.37%), Query Frame = 0
Query: 30 WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSSSGKDMSDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
W PG + Y W++I +F+V D ++F F G A VTKE Y CN T IS++ PA F L++ G +++ICT+ HC +GQ++AI V + P P ++ +S A T+ VGD GW GG Y WA N+ F+V D+LVF FV LQDVALV K AYE C+T S I V+ TSP +++NS G ++FT+T P C GQQL + V
Sbjct: 36 WLVPPGGDLAYGTWAAINKFTVGDVLLFNFTSGEQDVARVTKEAYLTCNSTNPISLKTTGPANFTLDATGEYFFICTIYAHCLLGQRLAIYVTASGPNPAPHPYLPPAAPAPVSPRAPVTYTVGDGLGWLVPPGGEFAYMTWAYNKTFMVEDILVFNFVEGLQDVALVTKEAYETCNT-SSTIQVWSTSPGKILINSTGDYFFTSTYPRHCILGQQLAIRV 255
HSP 2 Score: 74.7146 bits (182), Expect = 4.743e-13
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 0
Query: 149 THIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNV 250
T +VGD GW GG Y WA+ F VGDVL+F F + QDVA V K AY C++ I++ T PA L++ G ++F T C GQ+L + V
Sbjct: 27 TIVVGDSLGWLVPPGGDLAYGTWAAINKFTVGDVLLFNFTSGEQDVARVTKEAYLTCNSTN-PISLKTTGPANFTLDATGEYFFICTIYAHCLLGQRLAIYV 127
HSP 3 Score: 72.0182 bits (175), Expect = 4.910e-12
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 0
Query: 30 WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSS 137
W PG Y W+ + F V D +VF F +GL A VTKE Y+ CN + I + + SP + S G +++ T HC +GQ++AI V ++ AP SS
Sbjct: 164 WLVPPGGEFAYMTWAYNKTFMVEDILVFNFVEGLQDVALVTKEAYETCNTSSTIQVWSTSPGKILINSTGDYFFTSTYPRHCILGQQLAIRVVSSSGTTDHGTAPSSS 271
Match: A0A2C9UN83 ((Uncharacterized protein {ECO:0000313|EMBL:OAY31707.1}))
HSP 1 Score: 184.111 bits (466), Expect = 2.469e-54
Identity = 94/224 (41.96%), Postives = 128/224 (57.14%), Query Frame = 0
Query: 30 WTSLPGISVPYRIWSSIQRFSVNDNVVFVFPQGLHTAAEVTKEGYDNCNLTEIISIEAASPATFNLESVGTHYYICTVAGHCRMGQKVAITVPDTAPKQLATPAPVSSSGKDMSDDAVTTHIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNVRGR 253
W PG + Y W++I F+V D ++F F G+ A VTKE Y CN T IS++ PA F L++ G +++I T+ HC +GQ++AI V P P ++ +S A T++VG+ GW GG Y WA N+ F+V D LVF FV LQDVALV K AYE C+T S I V+ SPA ++LNS G ++FT+T P C GQQL + V R
Sbjct: 36 WLVPPGGDLAYATWAAINNFTVGDVLLFNFTSGVQDVARVTKEAYLTCNSTNPISLKTTGPANFTLDASGEYFFISTIYAHCPLGQRLAIYVTGPGPNPAPHPYSPPTAHSPVSPRAPVTYVVGNGLGWLVPPGGQLAYMIWAYNKTFMVEDALVFNFVEGLQDVALVTKEAYETCNT-SSTIQVWSKSPAKILLNSTGDYFFTSTYPRGCILGQQLAIRVVSR 258
HSP 2 Score: 79.7221 bits (195), Expect = 9.392e-15
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 0
Query: 149 THIVGDEFGWSPSSGGASDYKAWASNRIFLVGDVLVFKFVNKLQDVALVPKSAYENCDTKKSAIAVYKTSPATVILNSAGYHYFTTTNPLMCDFGQQLVVNVRG 252
T +VGD GW GG Y WA+ F VGDVL+F F + +QDVA V K AY C++ I++ T PA L+++G ++F +T C GQ+L + V G
Sbjct: 27 TLVVGDGLGWLVPPGGDLAYATWAAINNFTVGDVLLFNFTSGVQDVARVTKEAYLTCNSTNP-ISLKTTGPANFTLDASGEYFFISTIYAHCPLGQRLAIYVTG 129
| Match Name | Stats | Description |
|---|---|---|
| A0A5J4ZW40 | E-Value: 7.836e-58, PID: 41.90 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8523... [more] |
| A0A5J4ZYM5 | E-Value: 7.935e-58, PID: 41.54 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8523... [more] |
| B9SMH4 | E-Value: 2.505e-56, PID: 44.80 | (Early nodulin 16, putative {ECO:0000313|EMBL:EEF3... [more] |
| A0A6P3YUV9 | E-Value: 2.688e-56, PID: 45.54 | (blue copper protein-like {ECO:0000313|RefSeq:XP_0... [more] |
| W9SB32 | E-Value: 1.670e-55, PID: 44.40 | (Blue copper protein {ECO:0000313|EMBL:EXB96874.1}... [more] |
| A0A540MEN7 | E-Value: 1.769e-55, PID: 43.78 | (Uncharacterized protein {ECO:0000313|EMBL:TQD9720... [more] |
| M5W9M7 | E-Value: 1.991e-55, PID: 42.24 | (Uncharacterized protein {ECO:0000313|EMBL:EMJ0348... [more] |
| A0A218W081 | E-Value: 2.064e-55, PID: 42.80 | (blue copper protein-like {ECO:0000313|RefSeq:XP_0... [more] |
| A0A6A6MBI7 | E-Value: 8.408e-55, PID: 42.53 | (Uncharacterized protein {ECO:0000313|EMBL:KAF2310... [more] |
| A0A2C9UN83 | E-Value: 2.469e-54, PID: 41.96 | (Uncharacterized protein {ECO:0000313|EMBL:OAY3170... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |