Resource Type:
Polypeptide
Name:
DCAR_019721
Identifier:
DCAR_019721.mRNA-protein
Sequence:
MSDLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINV
NSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNL
KVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNS
FDGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTE
IRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRV
LEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVS
LANSTEEQNVNSINGLSSQVTSMQMSFEEDLADICIKVDKKLFRCHQVVL
ASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMY
TDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHW
LMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLR
TTVPSAPGAEATMDGGNILDDLREKWLEAEAAELDKRDESALIFDKRLEM
LMIVAKREKSVNHNGDN*
Sequence Length:
568
Sequence Checksum:
863a7500d4d944d2849c8960b1cdf5af
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_019721, derives from mRNA, DCAR_019721. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HIB1 ((Uncharacterized protein {ECO:0000313|EMBL:CCB51957.1}))
HSP 1 Score: 910.212 bits (2351), Expect = 0.000e+0
Identity = 439/562 (78.11%), Postives = 494/562 (87.90%), Query Frame = 0
Match: F6HIB1 ((Uncharacterized protein {ECO:0000313|EMBL:CCB51957.1}))
HSP 1 Score: 910.212 bits (2351), Expect = 0.000e+0
Identity = 439/562 (78.11%), Postives = 494/562 (87.90%), Query Frame = 0
Query: 3 DLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINVNSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNSFDGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTEIRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRVLEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVSLANSTEEQNV-NSINGLSSQVTSMQMSFEEDLADICIKVDKKLFRCHQVVLASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMYTDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHWLMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLRTTVPSAPGAEATMDGGNILDDLREKWLEAEAAELDKRDESALIFDKRLEMLMIVAKREKSVNH 563
DLD I L+P DF+A LP+KKVP GDVFEASRAGDV RL++L++ G+NVN+RDQWDS ALYYACLAGHL+AARMLLE GAIC EHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALR+ FLGC AN + L +G S +GG +F PDV FYVQGR IEAHR+ILSARSPFFK+KFE+DWKDRTE+R SREKLSY ALY LIHFFYSDRL+IAVD+MEDLVRICKVC+C++L+RVLEKEL HQKYAEYKAL DVDNSQKRFI+QGLSLPEEDRLPAAL RIL++SLA S +E N+ N ++ L S V +M+M +DLAD+CIKVDKK+FRCHQVVLA+RSEYFKARLSRMKDFLEG GLP++TLP LEEHDLS+EAFEKMIEYMYTD LKD+DPDQAEE+FDAASRYLLFPLKRAVAD L+PHLE PPAELCHWL+L+DMYGVLKIREYCLD++A NFETFAD+ EFRA+LLTLPPPSGDSSLRTTVPSAPGA D GN+LDDLREKWLEAEAAELDKRDESAL FDKRLEML++VA++E S H
Sbjct: 13 DLDTIDLEPEDFAASLPIKKVPAGDVFEASRAGDVDRLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRETFLGCAANRIYSEELEGQFQNSGLSSNGGLNRDHFPPDVAFYVQGRPIEAHRIILSARSPFFKRKFESDWKDRTEVRFSREKLSYPALYSLIHFFYSDRLDIAVDDMEDLVRICKVCKCDALQRVLEKELIHQKYAEYKALRDVDNSQKRFILQGLSLPEEDRLPAALHRILQISLAKSNQEHNLENGVSKLVSCVGAMKMGGSDDLADVCIKVDKKVFRCHQVVLAARSEYFKARLSRMKDFLEGINGLPNYTLPCLEEHDLSMEAFEKMIEYMYTDGLKDMDPDQAEELFDAASRYLLFPLKRAVADALMPHLETVPPAELCHWLILSDMYGVLKIREYCLDVIACNFETFADTPEFRAMLLTLPPPSGDSSLRTTVPSAPGAGMNTDQGNLLDDLREKWLEAEAAELDKRDESALQFDKRLEMLVVVAEQENSATH 574
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EF88 ((Uncharacterized protein {ECO:0000313|EMBL:THG14445.1}))
HSP 1 Score: 909.057 bits (2348), Expect = 0.000e+0
Identity = 448/573 (78.18%), Postives = 501/573 (87.43%), Query Frame = 0
Match: A0A4S4EF88 ((Uncharacterized protein {ECO:0000313|EMBL:THG14445.1}))
HSP 1 Score: 909.057 bits (2348), Expect = 0.000e+0
Identity = 448/573 (78.18%), Postives = 501/573 (87.43%), Query Frame = 0
Query: 2 SDLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINVNSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNSF-----DGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTEIRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRVLEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVSLANSTEEQNVNS-INGLSSQVTSMQMS-FEEDLADICIKVDKKLFRCHQVVLASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMYTDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHWLMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLRTTVPSAPGAEATMDGGNILDDLREKWLEAEAAELDKRDESALIFDKRLEMLMIVAKREKSVNHNGDN 567
+DLD I L+PSDF++ +PLKKVP GDVFEASRAGDV+RL+ L+D G+NVN+RDQWDS ALYYACLAGHL+AARMLLE GAIC EHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQ ALR+ FLGC AN L+ LSN +S +GG S +F PDVVFYVQGR IEAHR+ILSARSPFFK+KFET W DR E+R SREKLSY ALY LIHFFYSDRLEIAVD+MEDL RICKVC+C SL+RVLEKEL HQKYAEYKAL DVDNSQKRFI+QGLSLPEEDRLPAAL RIL++SL +ST EQN +S + + S++ +MQMS FE DLAD+C++VDKK+FRCHQVVLASRSEYFKARLSRMKDFLEGK GL D+ LP LEEHDLS+EAFEKMIEYMYTD LKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLP LEM PPAELCHWL+L+DMYGVLKIRE+CLD++A NFETFAD+ EFRA+LLTLPPPSGDSSLRTTVPSAPGA D N+LDDLREKWLEAEAAELDKRDESAL+FDKRLEMLM++A++EKS H+ D+
Sbjct: 11 TDLDGIGLEPSDFTSSIPLKKVPFGDVFEASRAGDVSRLRDLLDSGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQAALRETFLGCCANRNFLE----LSNSQSSSIPGNSSNGGSSSGHFPPDVVFYVQGRPIEAHRIILSARSPFFKRKFETHWMDRKEVRFSREKLSYHALYGLIHFFYSDRLEIAVDDMEDLARICKVCKCNSLQRVLEKELIHQKYAEYKALRDVDNSQKRFILQGLSLPEEDRLPAALHRILQISLVSSTREQNPDSGVENIVSRLGAMQMSEFENDLADVCVRVDKKVFRCHQVVLASRSEYFKARLSRMKDFLEGKDGLSDYVLPCLEEHDLSMEAFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPQLEMVPPAELCHWLILSDMYGVLKIREFCLDVIACNFETFADTPEFRAMLLTLPPPSGDSSLRTTVPSAPGAGVNTDQANLLDDLREKWLEAEAAELDKRDESALLFDKRLEMLMLIAEQEKSDVHSNDS 579
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X7L1 ((BTB/POZ domain-containing protein At2g04740 {ECO:0000313|RefSeq:XP_009785666.1}))
HSP 1 Score: 908.672 bits (2347), Expect = 0.000e+0
Identity = 438/562 (77.94%), Postives = 491/562 (87.37%), Query Frame = 0
Match: A0A1U7X7L1 ((BTB/POZ domain-containing protein At2g04740 {ECO:0000313|RefSeq:XP_009785666.1}))
HSP 1 Score: 908.672 bits (2347), Expect = 0.000e+0
Identity = 438/562 (77.94%), Postives = 491/562 (87.37%), Query Frame = 0
Query: 1 MSDLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINVNSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNSFDGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTEIRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRVLEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVSLANSTEEQNVN-SINGLSSQVTSMQMS-FEEDLADICIKVDKKLFRCHQVVLASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMYTDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHWLMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLRTTVPSAPGAEATMDGGNILDDLREKWLEAEAAELDKRDESALIFDKRLEMLMIVAKREKS 560
MSDLDNI LDP DF +CLPLKKVP+GDVFEASRAGDV RLK+L++ G+NVN+RDQWDS ALYYACLAGHL+AARMLLE GAIC EHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQ ALRD FL C AN L+ +GNS +GG ++F PDVVFY GR IEAHRVIL+ARSPFFKKKF+T+WKDR EIR SREKLSY ALY LIHFFYSDRL+IAVD+MEDLVRICKVC+C SL++VLEKEL HQKYAEYKAL DVDNSQKRFI+QG+SLPEEDRLP AL + L++SL NS EQN++ ++GL V+SMQ+S +E+DLAD+C++VDKK+FRCHQVVLASRSEYFKARLSRMKDFLEG+ LPD LP +EEHDL++ AFEKMIEYMYTD LKDIDPDQAEEMFDAASRYLLFPLKR VAD LLPHLEM PP ELCHWL+L+DMYGV KIREYCLD MA NFETFAD+QEFRA+LLTLPPPSGDSSLRTT PSAPGAE GN+LDDLREKWLEAEAAELD+RDESAL+FDKRLEMLM +A++EK+
Sbjct: 9 MSDLDNIDLDPEDFKSCLPLKKVPYGDVFEASRAGDVGRLKYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQAALRDTFLACWANRNYLEQSEGQVPISGNSENGGSSPSHFPPDVVFYAHGRPIEAHRVILTARSPFFKKKFQTEWKDRKEIRFSREKLSYHALYSLIHFFYSDRLDIAVDDMEDLVRICKVCKCHSLQKVLEKELIHQKYAEYKALRDVDNSQKRFILQGISLPEEDRLPNALHKSLQISLVNSNREQNLSLDVDGLVCLVSSMQISEYEDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFLEGRDRLPDNALPCIEEHDLTVGAFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRVVADALLPHLEMVPPVELCHWLVLSDMYGVFKIREYCLDAMACNFETFADTQEFRAMLLTLPPPSGDSSLRTTAPSAPGAEMNTAEGNLLDDLREKWLEAEAAELDERDESALLFDKRLEMLMHIAEQEKA 570
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Y323 ((BTB/POZ domain-containing protein At2g04740-like {ECO:0000313|RefSeq:XP_016446608.1}))
HSP 1 Score: 904.049 bits (2335), Expect = 0.000e+0
Identity = 436/562 (77.58%), Postives = 490/562 (87.19%), Query Frame = 0
Match: A0A1S3Y323 ((BTB/POZ domain-containing protein At2g04740-like {ECO:0000313|RefSeq:XP_016446608.1}))
HSP 1 Score: 904.049 bits (2335), Expect = 0.000e+0
Identity = 436/562 (77.58%), Postives = 490/562 (87.19%), Query Frame = 0
Query: 1 MSDLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINVNSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNSFDGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTEIRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRVLEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVSLANSTEEQNVN-SINGLSSQVTSMQMS-FEEDLADICIKVDKKLFRCHQVVLASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMYTDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHWLMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLRTTVPSAPGAEATMDGGNILDDLREKWLEAEAAELDKRDESALIFDKRLEMLMIVAKREKS 560
MSDLD+I L+P DF +CLPLKKVP+GDVFEASRAGDV RLK+L++ G+NVN+RDQWDS ALYYACLAGHL+AARMLLE GAIC EHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQ ALRD FL C AN L+ +GN +GG ++F PDVVFY GR IEAHRVIL+ARSPFFKKKF+T+WKDR EIR SREKLSY ALY L+HFFYSDRL+IAVD+MEDLVRICKVC+C SL++VLEKEL HQKYAEYKAL DVDNSQKRFI+QG+SLPE DRLP AL +IL++SL NS EQN+N ++GL V+SMQMS +E+DLAD+C++VDKK+FRCHQVVLASRSEYFKARLSRMKDF EG+ LPD LP +EEHDL++ AFEKMIEYMYTD LKDIDPDQAEEMFDAASRYLLFPLKR VAD LLPHLEM PPAELCHWL+L+DMYGV KIREYCLD MA NFETFAD+QEFRA+LLTLPPPSGDSSLRTT PSAPGAE GN+LDDLREKWLEAEAAELD+RDESAL+FDKRLEMLM +A++EK+
Sbjct: 9 MSDLDDIDLNPEDFKSCLPLKKVPYGDVFEASRAGDVDRLKYLLELGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQAALRDTFLACWANRNYLEQSEGQIPISGNLANGGSSLSHFPPDVVFYAHGRPIEAHRVILTARSPFFKKKFQTEWKDRKEIRFSREKLSYHALYSLVHFFYSDRLDIAVDDMEDLVRICKVCKCHSLQKVLEKELIHQKYAEYKALRDVDNSQKRFILQGISLPEGDRLPNALHKILQISLVNSNREQNLNLDVDGLVCLVSSMQMSEYEDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFPEGRDHLPDNALPCIEEHDLTVGAFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRVVADALLPHLEMVPPAELCHWLVLSDMYGVFKIREYCLDTMACNFETFADTQEFRAMLLTLPPPSGDSSLRTTAPSAPGAEMNTAEGNVLDDLREKWLEAEAAELDERDESALLFDKRLEMLMHIAEQEKA 570
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2WD17 ((BTB/POZ domain-containing protein {ECO:0000313|EMBL:PHT43145.1}))
HSP 1 Score: 903.279 bits (2333), Expect = 0.000e+0
Identity = 434/562 (77.22%), Postives = 495/562 (88.08%), Query Frame = 0
Match: A0A2G2WD17 ((BTB/POZ domain-containing protein {ECO:0000313|EMBL:PHT43145.1}))
HSP 1 Score: 903.279 bits (2333), Expect = 0.000e+0
Identity = 434/562 (77.22%), Postives = 495/562 (88.08%), Query Frame = 0
Query: 1 MSDLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINVNSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNSFDGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTEIRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRVLEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVSLANSTEEQNVN-SINGLSSQVTSMQMS-FEEDLADICIKVDKKLFRCHQVVLASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMYTDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHWLMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLRTTVPSAPGAEATMDGGNILDDLREKWLEAEAAELDKRDESALIFDKRLEMLMIVAKREKS 560
MS+LD+I LD DFS+ LPLKKVPHGDVFEASRAGDV RLK+L++ G+NVN+RDQWDS ALYYACLAGHL+AARMLLE+GAIC EHTFDGDRCHYAALNLKVRKLLKAFEARPPP+GPLQGALRD FLGC+ N L+ GNS +GG +F PDVVFYVQGR IEAHRVIL+ARSPFFK+KF+T+W+DR E+R SREKLSY ALY LIHFFYSDRL+IAVD+MEDLVRICKVC+C+SL++VLEKEL HQKYAEYKAL DVDNSQKRFI+QG+SLPE+DRLP AL +IL++++ NS EQN+N ++GL V+SMQ+S FE DLAD+C++VD+K+FRCHQVVLASRSEYFKARLSRMKDFLEG+ LPD LP +EEHDL+I AFEKMIEYMYTD LKDIDPDQAEEMFDAASRYLLFPLKR VAD LLPHLEM PAELCHWL+L+DMYGV+KIREYCLD MA NFETFAD+QEFRA+LLTLPPPSGDSSLRTT PSAPGAE + GN+LDDLREKWLEAEAAELD+RDESAL FDKRLEMLM +A++E++
Sbjct: 1 MSELDDIFLDADDFSSSLPLKKVPHGDVFEASRAGDVDRLKYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPIGPLQGALRDTFLGCLGNRKFLEEAEGQVAILGNSENGGSNPGHFPPDVVFYVQGRPIEAHRVILTARSPFFKQKFQTEWRDRKEVRFSREKLSYHALYSLIHFFYSDRLDIAVDDMEDLVRICKVCKCQSLQKVLEKELVHQKYAEYKALRDVDNSQKRFILQGISLPEDDRLPNALHKILQIAIVNSNREQNLNLDVDGLICLVSSMQISEFENDLADVCVRVDEKIFRCHQVVLASRSEYFKARLSRMKDFLEGRDCLPDNALPCIEEHDLTIGAFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRVVADALLPHLEMVSPAELCHWLVLSDMYGVIKIREYCLDTMACNFETFADTQEFRAMLLTLPPPSGDSSLRTTAPSAPGAEMSAAEGNVLDDLREKWLEAEAAELDQRDESALRFDKRLEMLMHIAEQERT 562
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DEQ6 ((Ankyrin repeat family protein {ECO:0000313|EMBL:GFS33683.1}))
HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 443/563 (78.69%), Postives = 492/563 (87.39%), Query Frame = 0
Match: A0A7J0DEQ6 ((Ankyrin repeat family protein {ECO:0000313|EMBL:GFS33683.1}))
HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 443/563 (78.69%), Postives = 492/563 (87.39%), Query Frame = 0
Query: 3 DLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINVNSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNSFDGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTEIRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRVLEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVSLANSTEEQNVN-SINGLSSQVTSMQMS-FEEDLADICIKVDKKLFRCHQVVLASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMYTDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHWLMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLRTTVPSAPGAEA-TMDGGNILDDLREKWLEAEAAELDKRDESALIFDKRLEMLMIVAKREKSVN 562
DLD I LDPSDF +PLKKVP GDV+EASRAGDV RL+ L++ G+NVN+RD+WDS ALYYACLAGHL+AARMLLE GAIC EHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQ ALR+ FLGC AN L+ + S GNS GG S +F PDVVFYVQGR IEAHRVILSARSPFFKKKFETDWKDR E+R S+EKLS+ ALY L+HFFYSDRLEIAVD+MEDLVRICKV +CESL+RV+EKEL HQKYAEYKAL DVDNSQKRFI+QGLSLPEEDRLPAAL RIL+VSL NST E N N + L S + +MQMS E DLAD+C++VDKK+FRCHQVVLASRSEY+KARLSRMKDFLEGK G PD+TLP LEEHDLS+EAFEKMIEYMYTD LK++D DQAEEMFDAASRYLLFPLKRAVADVLLP LEM PPAELCHWL+L+DMYGVLKIREYCLD++A NFETFA++ EFRA+LLTLPPPSGDSSLRTT PSAPGA T D N+LDDLREKWLEAEAAELD+RDESAL+FDKRLEMLM+VA++EKS +
Sbjct: 12 DLDGIDLDPSDFGTSVPLKKVPLGDVYEASRAGDVGRLQDLLESGVNVNARDRWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQAALRETFLGCCANRSWLEQADDQSAIPGNSSTGGYSSGHFPPDVVFYVQGRPIEAHRVILSARSPFFKKKFETDWKDRNEVRFSKEKLSFPALYSLVHFFYSDRLEIAVDDMEDLVRICKVSKCESLQRVVEKELIHQKYAEYKALRDVDNSQKRFILQGLSLPEEDRLPAALHRILQVSLVNSTREHNPNCGDDNLVSCLGAMQMSDVESDLADVCVRVDKKVFRCHQVVLASRSEYYKARLSRMKDFLEGKNGFPDYTLPCLEEHDLSMEAFEKMIEYMYTDALKNLDTDQAEEMFDAASRYLLFPLKRAVADVLLPQLEMVPPAELCHWLILSDMYGVLKIREYCLDVIACNFETFAETPEFRAMLLTLPPPSGDSSLRTTAPSAPGAGVNTTDQENLLDDLREKWLEAEAAELDERDESALLFDKRLEMLMLVAEQEKSAS 574
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2Z390 ((BTB/POZ domain-containing protein {ECO:0000313|EMBL:PHT76371.1}))
HSP 1 Score: 898.656 bits (2321), Expect = 0.000e+0
Identity = 433/562 (77.05%), Postives = 494/562 (87.90%), Query Frame = 0
Match: A0A2G2Z390 ((BTB/POZ domain-containing protein {ECO:0000313|EMBL:PHT76371.1}))
HSP 1 Score: 898.656 bits (2321), Expect = 0.000e+0
Identity = 433/562 (77.05%), Postives = 494/562 (87.90%), Query Frame = 0
Query: 1 MSDLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINVNSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNSFDGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTEIRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRVLEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVSLANSTEEQNVN-SINGLSSQVTSMQMS-FEEDLADICIKVDKKLFRCHQVVLASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMYTDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHWLMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLRTTVPSAPGAEATMDGGNILDDLREKWLEAEAAELDKRDESALIFDKRLEMLMIVAKREKS 560
MS+LD+I LD DF++ LPLKKVPHGDVFEASRAGDV RLK+L++ G+NVN+RDQWDS ALYYACLAGHL+AARMLLE+GAIC EHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRD FLGC+ N L+ GNS +GG ++F PDVVFYVQGR IEAHRVIL+ARSPFFK+KF+T+WKDR E+R SREKLSY ALY LIHFFYSDRL+IAVD+MEDLVRICKVC+C+SL++VLEKEL HQKYAEYKAL DVDNSQKRFI+QG+SLPE+DRLP AL +IL++++ NS EQN+N ++GL V+SMQ+S FE DLAD+C++VD+K+FRCHQVVLASRSEYFKARLSRMKDFLE + LPD LP +EEHDL+I AFEKMIEYMYTD LKDIDP QAEEMFDAASRYLLFPLKR VAD LLPHLEM PAELCHWL+L+DMYGV+KIREYCLD MA NFETFAD+QEFRA+LLTLPPPSGDSSLRTT PSAPGAE + GN+LDDLREKWLEAEAAELD+RDESAL FDKRLEMLM +A++E++
Sbjct: 1 MSELDDIFLDADDFNSSLPLKKVPHGDVFEASRAGDVDRLKYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDTFLGCLGNRKFLEEAEGQVAILGNSENGGSNPSHFPPDVVFYVQGRPIEAHRVILTARSPFFKQKFQTEWKDRKEVRFSREKLSYHALYSLIHFFYSDRLDIAVDDMEDLVRICKVCKCQSLQKVLEKELVHQKYAEYKALRDVDNSQKRFILQGISLPEDDRLPNALHKILQIAIVNSNREQNLNLDVDGLICLVSSMQISEFENDLADVCVRVDEKIFRCHQVVLASRSEYFKARLSRMKDFLERRDCLPDNALPCIEEHDLTIGAFEKMIEYMYTDGLKDIDPVQAEEMFDAASRYLLFPLKRVVADALLPHLEMVSPAELCHWLVLSDMYGVIKIREYCLDTMACNFETFADTQEFRAMLLTLPPPSGDSSLRTTAPSAPGAEMSAAEGNVLDDLREKWLEAEAAELDERDESALRFDKRLEMLMHIAEQERT 562
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251TM26 ((Putative ankyrin repeat family protein {ECO:0000313|EMBL:OTG12130.1}))
HSP 1 Score: 897.501 bits (2318), Expect = 0.000e+0
Identity = 426/567 (75.13%), Postives = 495/567 (87.30%), Query Frame = 0
Match: A0A251TM26 ((Putative ankyrin repeat family protein {ECO:0000313|EMBL:OTG12130.1}))
HSP 1 Score: 897.501 bits (2318), Expect = 0.000e+0
Identity = 426/567 (75.13%), Postives = 495/567 (87.30%), Query Frame = 0
Query: 1 MSDLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINVNSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNSFDGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTEIRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRVLEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVSLANSTEEQNVNSINGLSSQVTSMQMS---FEEDLADICIKVDKKLFRCHQVVLASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMYTDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHWLMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLRTTVPSAPGAEATMDGGNILDDLREKWLEAEAAELDKRDESALIFDKRLEMLMIVAKREKSVNHN 564
MSDLD+I L+P DF + +PLKKVP+GDVFEASRAGDV RLK+L++ G+NVN+RDQWDS ALYYACLAGHL+AA+MLLE GAIC EHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALR+ FLGCV N G L+ L+ S GN +GG +YF PDV FY+ GR IEAHRVILSARSP+FKKKFETDW+DR EIR SREKLSY A Y L+HFFYSDRLEIAVD+MEDLVRICKVC+CESL++V+EKE+ HQKYA+YK+L D+DNSQ+R+I+QG SLPEEDRLPAAL R+L++SL NS +E + L S+ SM+++ FE+DLAD+ IKVD K+FRCHQV+LASRSEYFK RLSRM+DFLEGK GLPD+ LP + EHDLS+EAFEKMIEYMYTD LKDI+P+QAEEMFDAASRYLLFPLKRAVAD LLPHL+M PP++LCHWL+L+DMYGVLKIREYCLD++A NFETFAD++EFRA+LLTLPPPSGDSSLRTTVP+APGAE M GN+LDDLREKWLE EA ELD RDESAL+FDKRLEMLM+VA++E+SV N
Sbjct: 1 MSDLDDIDLNPEDFLSSVPLKKVPYGDVFEASRAGDVDRLKYLLESGVNVNARDQWDSVALYYACLAGHLDAAKMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRETFLGCVGNRGYLEQLDGKSQFEGNLSNGGTSPSYFPPDVTFYLHGRPIEAHRVILSARSPYFKKKFETDWRDRKEIRFSREKLSYPAFYSLVHFFYSDRLEIAVDDMEDLVRICKVCKCESLQKVIEKEVRHQKYADYKSLQDIDNSQRRYILQGSSLPEEDRLPAALSRVLQISLNNSIQEGKHE--DDLVSRFGSMKINGFEFEDDLADVNIKVDDKVFRCHQVILASRSEYFKTRLSRMEDFLEGKDGLPDYNLPLINEHDLSMEAFEKMIEYMYTDGLKDINPEQAEEMFDAASRYLLFPLKRAVADALLPHLQMVPPSQLCHWLILSDMYGVLKIREYCLDMIACNFETFADTKEFRAMLLTLPPPSGDSSLRTTVPNAPGAEMKMTEGNVLDDLREKWLEVEAGELDTRDESALLFDKRLEMLMLVAQQEQSVADN 565
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4G4R5 ((BTB/POZ domain-containing protein At2g04740 {ECO:0000313|RefSeq:XP_018838881.1}))
HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0
Identity = 436/568 (76.76%), Postives = 494/568 (86.97%), Query Frame = 0
Match: A0A2I4G4R5 ((BTB/POZ domain-containing protein At2g04740 {ECO:0000313|RefSeq:XP_018838881.1}))
HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0
Identity = 436/568 (76.76%), Postives = 494/568 (86.97%), Query Frame = 0
Query: 2 SDLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINVNSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNSFDGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTEIRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRVLEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVSLANSTEEQNV-NSINGLSSQVTSMQMS-FEEDLADICIKVDKKLFRCHQVVLASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMYTDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHWLMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLRTTVPSAPGAEATMDGGNILDDLREKWLEAEAAELDKRDESALIFDKRLEMLMIVAKREKSVNHNGDN 567
+DLD I LDPSDF + +PLKKVP+GDVFEASRAGD+ RLK+L++ GINVN+RDQWDS ALYYACLAGHL+AARMLLE GAIC EHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQ ++R++F+GC N L+ N S + S GG S +F PDVVF+VQGR IEAHRVILSARS +FK+KFETDWKDR E+R +REKLSY+ALY LIHFFYSDRLEI VD+ME LVRICKVC+CESL+R++EKEL HQKYAEYKAL D+D+SQKRFI+QG+SLPEEDRLPA+L RIL+++LANST EQN NSI LSS ++MQ+S F +DLAD+ ++VDKK+FRCHQVVLASRSEYF+ARLSRMK F EGK LP TLP LEEHDLS EAFEKMIEYMYTD LKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEM PAELC WL+L+DMYGV+KIREYCLD +A NFETFAD+QEFRA+LLTLPPPSGDSSLRTTVPSAPGA D N+LDDLREKWLEAEAAELDKRDESAL+FDKRLEMLM+VA++EKS D+
Sbjct: 15 TDLDGIDLDPSDFGSSIPLKKVPNGDVFEASRAGDIDRLKYLLELGINVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQASMREIFMGCGENRAFLEQANNQSQISALSSTGGSNSYHFPPDVVFFVQGRPIEAHRVILSARSSYFKRKFETDWKDRKEVRFAREKLSYTALYSLIHFFYSDRLEIVVDDMEHLVRICKVCKCESLQRIIEKELIHQKYAEYKALRDIDDSQKRFILQGISLPEEDRLPASLHRILQIALANSTREQNQDNSIEELSSYASAMQISDFVDDLADVSVQVDKKIFRCHQVVLASRSEYFRARLSRMKGFHEGKVSLPVDTLPCLEEHDLSTEAFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMISPAELCQWLILSDMYGVVKIREYCLDTIACNFETFADTQEFRAMLLTLPPPSGDSSLRTTVPSAPGAIINADQANLLDDLREKWLEAEAAELDKRDESALLFDKRLEMLMLVAEQEKSDGAPADD 582
BLAST of DCAR_019721 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1A7N8 ((Ankyrin repeat family protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400016452}))
HSP 1 Score: 896.345 bits (2315), Expect = 0.000e+0
Identity = 432/563 (76.73%), Postives = 495/563 (87.92%), Query Frame = 0
Match: M1A7N8 ((Ankyrin repeat family protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400016452}))
HSP 1 Score: 896.345 bits (2315), Expect = 0.000e+0
Identity = 432/563 (76.73%), Postives = 495/563 (87.92%), Query Frame = 0
Query: 1 MSDLDNIALDPSDFSACLPLKKVPHGDVFEASRAGDVTRLKHLIDRGINVNSRDQWDSCALYYACLAGHLEAARMLLEHGAICDEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDVFLGCVANSGNLDHLNALSNPAGNSFDGGPCSTYFKPDVVFYVQGRSIEAHRVILSARSPFFKKKFETDWKDRTEIRLSREKLSYSALYCLIHFFYSDRLEIAVDEMEDLVRICKVCRCESLKRVLEKELSHQKYAEYKALGDVDNSQKRFIMQGLSLPEEDRLPAALQRILEVSLANSTEEQNVN-SINGLSSQVTSMQMS-FEEDLADICIKVDKKLFRCHQVVLASRSEYFKARLSRMKDFLEGKGGLPDFTLPFLEEHDLSIEAFEKMIEYMYTDTLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLPHLEMAPPAELCHWLMLADMYGVLKIREYCLDIMAYNFETFADSQEFRALLLTLPPPSGDSSLRTTVPSAPGAEATMDG-GNILDDLREKWLEAEAAELDKRDESALIFDKRLEMLMIVAKREKS 560
MSDLD+I LD DF +CLPLKKVP+GDVFEASRAGDV RLK+L++ G+NVN+RDQWDS ALYYACLAGHL+AARMLLE GAIC EHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRD FL C AN + + +GNS +GG C + F PDVVFYVQGR IEAHRVIL+ARSPFF++KF+T+WKDR E+R S+EKLSY ALY LIHFFYSDRL+IAVD+MEDLVRICKV +C SL++VLEKEL HQKYAEYKAL DVDNSQKRFI+QG+SLPEEDRLP AL +IL+++L NS EQN+N ++GL V+SMQ+S FE+DLAD+C++VDKK+FRCHQV+LASRSEYFKARLSRMKDFLEG+ LPD LP +EEHDL++ AF+KMIEYMYTD LKDIDPDQAEEMFDAASRYLLFPLKR VAD LLPHLEM PAELCHWL+L+DMYGV+KIREYCLD MA NFETFAD+QEFRA+LLTLPPPSGDS+LRTT PSAPGAE + GN+LDDLREKWLEAEAAELD+RDESAL+FDKRLEMLM +A++E++
Sbjct: 1 MSDLDDIFLDADDFKSCLPLKKVPYGDVFEASRAGDVDRLKYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRDTFLACWANKKFFEQSDGQVPISGNSENGGSCPSDFPPDVVFYVQGRPIEAHRVILTARSPFFEQKFQTEWKDRKEVRFSKEKLSYHALYSLIHFFYSDRLDIAVDDMEDLVRICKVSKCLSLQKVLEKELIHQKYAEYKALRDVDNSQKRFILQGISLPEEDRLPNALHKILQIALVNSNSEQNLNHDVDGLICLVSSMQISEFEDDLADVCVRVDKKIFRCHQVILASRSEYFKARLSRMKDFLEGRDCLPDNALPCIEEHDLTVGAFKKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRVVADALLPHLEMVSPAELCHWLVLSDMYGVVKIREYCLDAMACNFETFADTQEFRAMLLTLPPPSGDSALRTTAPSAPGAEMSSTAEGNVLDDLREKWLEAEAAELDERDESALLFDKRLEMLMQIAEQERT 563
| Match Name | Stats | Description |
|---|---|---|
| F6HIB1 | E-Value: 0.000e+0, PID: 78.11 | (Uncharacterized protein {ECO:0000313|EMBL:CCB5195... [more] |
| A0A4S4EF88 | E-Value: 0.000e+0, PID: 78.18 | (Uncharacterized protein {ECO:0000313|EMBL:THG1444... [more] |
| A0A1U7X7L1 | E-Value: 0.000e+0, PID: 77.94 | (BTB/POZ domain-containing protein At2g04740 {ECO:... [more] |
| A0A1S3Y323 | E-Value: 0.000e+0, PID: 77.58 | (BTB/POZ domain-containing protein At2g04740-like ... [more] |
| A0A2G2WD17 | E-Value: 0.000e+0, PID: 77.22 | (BTB/POZ domain-containing protein {ECO:0000313|EM... [more] |
| A0A7J0DEQ6 | E-Value: 0.000e+0, PID: 78.69 | (Ankyrin repeat family protein {ECO:0000313|EMBL:G... [more] |
| A0A2G2Z390 | E-Value: 0.000e+0, PID: 77.05 | (BTB/POZ domain-containing protein {ECO:0000313|EM... [more] |
| A0A251TM26 | E-Value: 0.000e+0, PID: 75.13 | (Putative ankyrin repeat family protein {ECO:00003... [more] |
| A0A2I4G4R5 | E-Value: 0.000e+0, PID: 76.76 | (BTB/POZ domain-containing protein At2g04740 {ECO:... [more] |
| M1A7N8 | E-Value: 0.000e+0, PID: 76.73 | (Ankyrin repeat family protein {ECO:0000313|Ensemb... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |