Resource Type:
Polypeptide
Name:
DCAR_017636
Identifier:
DCAR_017636.mRNA-protein
Sequence:
MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHP
HTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQQLTFSDDDEAGV
GAEDSGGKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEK
KGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVND
ILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHT
SCNGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTE
GSKMMKGVSVEEEDDDEDDNDDEDEDNDEVEGGARGHEHESDLDVKITSH
KRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEH
RMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLIL
RQKELELLDSQQQHQSCNRSSMAG*
Sequence Length:
475
Sequence Checksum:
c8abbca53150e5c304327c8c85769798
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_017636, derives from mRNA, DCAR_017636. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BZJ5 ((Putative stress response protein NST1 {ECO:0000313|EMBL:MPA74329.1}))
HSP 1 Score: 490.345 bits (1261), Expect = 1.287e-168
Identity = 289/483 (59.83%), Postives = 351/483 (72.67%), Query Frame = 0
Match: A0A5B7BZJ5 ((Putative stress response protein NST1 {ECO:0000313|EMBL:MPA74329.1}))
HSP 1 Score: 490.345 bits (1261), Expect = 1.287e-168
Identity = 289/483 (59.83%), Postives = 351/483 (72.67%), Query Frame = 0
Query: 1 MEGNGMPNGMFSGINSGMLGLEMS-PQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHH----TQNQQAVKQGYPYGAKPRTQQLTFSDDDEAGVGAEDSGG--KRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSC--------NGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVS---VEEEDDDEDDNDDEDEDNDEVEGGARGHE--HESDLDVKITSHKRTRN----ETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLD 459
ME NG+ MFS ++SGMLGLEMS Q QNP++ L QQHPH + ++G + HH Q Q++KQGYPY K + QQLT SD+DE G+ AEDS G K+ SPWQRMKWTD MV+LLIM+VFYIGD+ G SEG+D AG+KKGGG LQKKGKWKSVS+AMMERGF+VSPQQCEDKFNDLNKRYKRVNDILGKGT+C+VVENQSLL+TMDHLSPKMKEEV+KLLNSKHLFFREMCAYH SC GA HS E A+ S Q QQQ Q+++C HSS+++P N GR + EG KM+KG S EE+DD++DD+DD++ +++ VEG R HE HE D D + TS KR R + S Q+ + EL V+QDGTKSSWEKRQWM+ +L+QLEE + +QC AFELEKQ++KW+KF KKER+ME E+L N+RMRL+NERMVL+LRQKE ELLD
Sbjct: 1 MEANGLSGEMFSSMSSGMLGLEMSLHPHQQPPPPPPQQQNPRH--LQQQHPHPQ-MVAAYGHHHEADHHHNHHPQTLQSMKQGYPYATKAKPQQLTLSDEDEPGLTAEDSAGDGKKKISPWQRMKWTDSMVRLLIMVVFYIGDEAG-SEGSDHAGKKKGGG---VLQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLETMDHLSPKMKEEVKKLLNSKHLFFREMCAYHNSCGGGGGGGGTSGAHHSPEVAAEPS---QIQQQSQQQSCFHSSESAPIGANSGRAELEGLKMVKGGSGEEEEEDDDEDDDDDDDENEDEVVEGDGRVHEHGHEEDDDDEKTSRKRPRKGGAFSSSLSSSPLIQQLSGELMSVVQDGTKSSWEKRQWMKKQLIQLEEQGVSYQCNAFELEKQRLKWVKFSSKKEREMEREKLKNQRMRLENERMVLLLRQKEFELLD 473
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GJ30 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 489.189 bits (1258), Expect = 2.720e-168
Identity = 285/489 (58.28%), Postives = 343/489 (70.14%), Query Frame = 0
Match: A0A7J7GJ30 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 489.189 bits (1258), Expect = 2.720e-168
Identity = 285/489 (58.28%), Postives = 343/489 (70.14%), Query Frame = 0
Query: 10 MFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHH-HTQNQQAVKQGYPYGAKPRTQQLTFSDDDEAGVGAEDSGG---KRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSC-----------------NGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEEEDDDEDDNDDEDEDNDE----VEGGARGHEHESDLDVKI-TSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQQQHQ-SCNRSS 471
M+S + SGMLGLEMS H QQNPQNP QQHPH +VS+G +E DHH H Q QQ+VK YP+ KP+ QQLT SD+DE G+ EDS G K+ SPWQRMKWTD MVKLLIM+VFYIGD+ G S+GN EKK GGG LQKKGKWKSVS+AMMERGF VSPQQCEDKFNDLNKRYKRVNDILGKGT+C+VVENQSLL+TMDHLSPK KEEV+KLLNSKHLFFREMCAYH SC G HS E A+ S QQ Q QR C HS DN+P V N GR +TEGSKM KG S EEED+D+++++++D+D+++ V GG R HE + + S KR R A S Q+ + EL V+QDG+KS EK WM+ RL+QLEE R+ +Q +AFE+EKQ++KW+KF KKER+ME ++L NERM+L+NERM+L+LRQKELEL+D Q Q S N+ S
Sbjct: 1 MYSTMGSGMLGLEMS---LHHHPPQQNPQNPHQ---LQQHPHPQ--LVSYGHHEADHHQHPQTQQSVKPSYPFAPKPKPQQLTLSDEDEPGLTPEDSAGGDGKKKLSPWQRMKWTDSMVKLLIMVVFYIGDEAG-SDGN----EKKKGGG--VLQKKGKWKSVSRAMMERGFCVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLETMDHLSPKRKEEVKKLLNSKHLFFREMCAYHNSCGGAAAANGGGAAATSGGASGPHHSPEVAAEPS---QQIQPHQR--CFHSVDNTPIVPNSGRAETEGSKMAKGGSPEEEDEDDEEDENDDDDDEDEDEIVGGGVRDHEEDEEDGGDEKCSRKRQRKGMLAFPSPLIQQLSTELTSVVQDGSKSLLEKGHWMKNRLIQLEEQRVTYQYEAFEIEKQRLKWVKFSSKKEREMERDKLKNERMKLENERMLLLLRQKELELIDLHQPPQISSNKRS 469
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251K4M8 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 485.723 bits (1249), Expect = 7.832e-167
Identity = 280/489 (57.26%), Postives = 345/489 (70.55%), Query Frame = 0
Match: A0A251K4M8 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 485.723 bits (1249), Expect = 7.832e-167
Identity = 280/489 (57.26%), Postives = 345/489 (70.55%), Query Frame = 0
Query: 1 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHT-MVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQ--QLTFSDDDEAGVGAEDSG-GKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSCNGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVS------VEEEDDDEDDNDDEDEDNDEVEGGARGH-------EHESDLDVKITSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQQQHQ-SCNRSS 471
ME NG+P G+FSG+ SGMLGLEM QQ Q Q +P H HH M+ +GQ+E D+HH Q+QQA+K GYPY + Q Q T SD+DE G +D+ GKR SPWQRMKWTD MV+LLIM VFYIGD+ G EGND G+KK GG QKKGKWKSVS+AMME+GFFVSPQQCEDKFNDLNKRYKRVNDILGKGT CKVVENQSLL+TMD LSPKMKEEV+KLLNSKHLFFREMCAYH SC G+ A ++ H Q QQ+R C HSS+ + + + R++TEGSKM K S ++++ +ED++D +DE ++ +EG +RGH E E D D K S KR R E ++ S Q+ N++L VIQDG KS+WEK+ WM++RLMQLEE ++ +QCQAFELEKQ++KW+KF KKER+ME +L NER RL++ERMVL++RQKELELLD QQ Q S N+ S
Sbjct: 1 MEHNGLPGGIFSGMGSGMLGLEMPLQQQQQQNPQNPQNSP----------HLHHPQMLGYGQHESDNHHPQSQQAMKHGYPYASSTARQKPQSTVSDEDEPGFNGDDTTDGKRKVSPWQRMKWTDSMVRLLIMAVFYIGDEAG-PEGNDPTGKKKAGG---LSQKKGKWKSVSRAMMEKGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTGCKVVENQSLLETMD-LSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSSGVATDQSNPQHPQASSHAQQQR-CSHSSETAQFMTH-SRSETEGSKMAKRGSNEEDDEEDDDESEEDEDDSDDEVDEAIEGNSRGHKNCDHGHEDEDDHDEK-GSKKRQRTEVFSLSSAMMQQLNSDLVSVIQDGAKSTWEKKHWMKLRLMQLEEQQVSYQCQAFELEKQRLKWVKFSSKKEREMERAKLENERRRLESERMVLLIRQKELELLDLHQQQQISSNKRS 471
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AQ18 ((transcriptional regulator EFH1 isoform X1 {ECO:0000313|RefSeq:XP_021289063.1}))
HSP 1 Score: 481.485 bits (1238), Expect = 3.581e-165
Identity = 279/477 (58.49%), Postives = 346/477 (72.54%), Query Frame = 0
Match: A0A6J1AQ18 ((transcriptional regulator EFH1 isoform X1 {ECO:0000313|RefSeq:XP_021289063.1}))
HSP 1 Score: 481.485 bits (1238), Expect = 3.581e-165
Identity = 279/477 (58.49%), Postives = 346/477 (72.54%), Query Frame = 0
Query: 1 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQQLT-FSDDDEAGVGAEDSGG--KRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSCN-------GGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMK--GVSVEEEDDDEDDNDDEDEDNDEVEGGARGH-----EHESDLDVKITSHKRTRNETYAPD-SNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLD 459
ME NG+P GMFSGI SGMLGLEM P Q Q QNPQ+ QNP+ HP MV++ +E D +Q+QQ+VKQGYP+ +K T+QL+ SD+DE G +D KR SPWQRMKWTD MV+LLIM V+YIGD+ G SEGND AG+KK GG LQKKGKWKSVS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILG+GT+CKVVENQSLLDTMD LSPKMKEEVRKLLNSKHLFFREMCAYH SC GA HS E ++S +Q QQ Q+R CLHSSD + N GR D E SK+ K ++++DD+ D+D++++D + ++G +RGH E + D D K +S KR R +A S Q+ + E+ VIQDG+KS+WEK+ WM++RLMQLEE ++ +Q QAFELEKQ++KW+KF KKER+ME +L NER RL+NERMVL++RQKELE +D
Sbjct: 1 METNGLPGGMFSGIGSGMLGLEM-PLHPQQQQQPQNPQSAQNPHQLHHHPQ----MVAYSHHETDQ--SQHQQSVKQGYPFASK--TKQLSPLSDEDEPGFTPDDGAADAKRKISPWQRMKWTDSMVRLLIMAVYYIGDEAG-SEGNDPAGKKKAGG---LLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGTACKVVENQSLLDTMD-LSPKMKEEVRKLLNSKHLFFREMCAYHNSCGHGATAGASGANHSPEVATETSQIQHQQASNQQR-CLHSSDAAQIAGNSGRMDPEASKLAKVGSEEEDDDEDDDSDDDEDEDDEEAMDGHSRGHNGHGQEDDEDNDEK-SSRKRPRKGAFAMSLSPLMQQLSCEVVNVIQDGSKSAWEKKHWMKMRLMQLEEQQVSYQYQAFELEKQRLKWVKFSGKKEREMEKAKLENERRRLENERMVLLVRQKELEFVD 461
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6M5D5 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 477.248 bits (1227), Expect = 5.229e-164
Identity = 269/473 (56.87%), Postives = 319/473 (67.44%), Query Frame = 0
Match: A0A6A6M5D5 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 477.248 bits (1227), Expect = 5.229e-164
Identity = 269/473 (56.87%), Postives = 319/473 (67.44%), Query Frame = 0
Query: 1 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQ--QLTFSDDDEAGVGAEDSG--GKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSCNGGAQ-------HSAEAGADSSHVQQQQQ---QQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEEEDDDEDDNDDEDEDNDEVEGGARGHEHESDLDVKITSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLD 459
ME NG+P G+FS + SGMLGLEMS LQ Q +PNL HP MV++ E DHH QQ +K YPY + Q Q T SD+DE G +DS GK+ SPWQRMKWTD MV+LLIM VFYIGD+ G SEGND G+KK GG QKKGKWKSVS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILGKGT+CKVVENQSLL+TMD LS KMKEEV+KLLNSKHLFFREMCAYH SC G+ HS E G D SH Q Q QQQR C HS++N+ V N RT+TEGSK+ KG + +DDEDE E G+R KR R E ++ S+ Q+ N+EL VIQDG KS+WEK+ WM++RLMQLEE ++ +QCQA ELEKQ++KW+KF KKER+ME +L NER RL++ERMVL++RQKELE LD
Sbjct: 1 MEPNGLPGGIFSDMGSGMLGLEMS------LQQQNTQNPQNSPNL--HHPQ----MVAYAHRESDHH---PQQTMKHAYPYASSTTRQKPQSTASDEDEPGFTGDDSTADGKKKVSPWQRMKWTDSMVRLLIMAVFYIGDEAG-SEGNDPTGKKKAGG---LSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQSLLETMD-LSTKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSSGVASGNIHSPEVGTDQSHAQHPQSSHAQQQR--CSHSTENAQFVTN-SRTETEGSKLAKG-----GQNSHHGHDDEDEHE---EKGSR---------------KRRRTEVFSLSSSLMQQLNSELASVIQDGAKSTWEKKHWMKLRLMQLEEQQVSYQCQALELEKQRLKWVKFSSKKEREMERAKLENERRRLESERMVLLIRQKELEFLD 427
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U9V3 ((uncharacterized protein LOC105174138 {ECO:0000313|RefSeq:XP_011094441.1}))
HSP 1 Score: 473.396 bits (1217), Expect = 5.522e-162
Identity = 272/494 (55.06%), Postives = 343/494 (69.43%), Query Frame = 0
Match: A0A6I9U9V3 ((uncharacterized protein LOC105174138 {ECO:0000313|RefSeq:XP_011094441.1}))
HSP 1 Score: 473.396 bits (1217), Expect = 5.522e-162
Identity = 272/494 (55.06%), Postives = 343/494 (69.43%), Query Frame = 0
Query: 1 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQQLTFSDDDEAGVGAEDSG--GKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSCN-----GGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVS---------VEEEDDDEDDNDDEDEDNDEVEGGAR----GHEHESDLDVKITSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQQQHQSCNRSSMAG 474
ME N MP G +S + GMLGLEMS L PQ + QQ + S+G +E D+H +Q QQ+ KQGYP+ AK + Q LT SDDDE G AE+S GKR WQRMKWTD MV+LLIM+V+YIGD+ G +GND A +KKGGG LQKKGKWKSVS+AMMERGF+VSPQQCEDKFNDLNKRYKRVNDILGKG SC+VVENQ LLDTMDHL+PKMKEEV+KLLNSKHLFFREMCAYH SC G+ + GA + V Q Q Q++ CLHSS+N+P V NL R + EGSK++KGVS +++DD ++D+ DED D++ + G+R GHE ES+ +S KR R T+ S Q+ + E+ V+QDG KS +EKR WM+ +LM LEE R+ QCQ+FELEKQ++KWLKF+ KKER++E E+L NER++L+NERM+L++RQKELELLD ++ + SS+ G
Sbjct: 1 MESNAMPGGRYSNVQPGMLGLEMS------LNHHIPPQQNPHQMPQQQPHPNQPMVPSYGHHEADYH-SQAQQSAKQGYPFSAKSKNQTLTLSDDDEPGFLAENSTDDGKRKMPSWQRMKWTDNMVRLLIMVVYYIGDEVGSDQGNDPAAKKKGGG---VLQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGISCRVVENQRLLDTMDHLTPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSGASGSGAAGFPGAAAEAVSQTQLHLQQQRCLHSSENAPVVANLNRGENEGSKLVKGVSGENDDDQDDDDDQDDQDNDDQDEDGDDEVIGAGSRIHDHGHEDESNDTNDRSSTKRLRRGTF--HSPLIQQLDAEIMTVVQDGAKSPFEKRLWMKKKLMGLEEQRVGIQCQSFELEKQRLKWLKFRTKKEREIEREKLRNERLQLENERMMLLIRQKELELLDHHSPNKKSDPSSITG 482
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9VCP2 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 468.389 bits (1204), Expect = 5.197e-160
Identity = 273/497 (54.93%), Postives = 336/497 (67.61%), Query Frame = 0
Match: A0A2C9VCP2 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 468.389 bits (1204), Expect = 5.197e-160
Identity = 273/497 (54.93%), Postives = 336/497 (67.61%), Query Frame = 0
Query: 1 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHT-MVSFGQNEVDHHHTQNQQAVKQGYPY--GAKPRTQQLTFSDDDEAGVGAED--SGGKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSC----NG---GAQHSAEAGADSSHVQQQQQ---QQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGV------SVEEEDDDEDDNDDEDEDNDEVEGGARGHEHESDLDVKIT----SHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQQQHQ-SCNRSS 471
ME NG+P G+FSG+ SG+LGLE + L QQNP N QN + H HH MV++ + DHH QQ +K YPY A Q SD+DE G +D S GKR SPWQRMKWTD MV+LLIM VFYIGD+ G SE ND G+KK GG QKKGKWKSVS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILGKGT+CKVVENQ+LL+TMD LS KMKEEV+KLLNSKHLFFREMCAYH SC NG G HS E D SH Q Q QQQR C HSS+ + V N R +TEGSKM K ++++ ++DD+D ++++++ +EG +RG D S KR + ++ S+ Q+ N+EL VIQDG +S+WEK+ WM++RLMQLEE ++ +QCQAFELEKQ++KW+KF KKER+ME +L NER RL+ ERMVL++RQKELELLD QQ Q S N+ S
Sbjct: 1 MEHNGLPGGIFSGMGSGILGLE------RPLHQQQNPHNSQNSH------HLHHPQMVAYAHRDSDHHLQSQQQTLKHSYPYPSSASREKPQSPLSDEDEPGFAGDDNTSDGKRKVSPWQRMKWTDSMVRLLIMAVFYIGDEAG-SELNDPTGKKKAGG---LSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQTLLETMD-LSQKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSNGVASGTNHSPELATDQSHAQHPQSSHAQQQR--CSHSSETAHFVTN-SRNETEGSKMGKRARNEEDDEEDDDESEDDDDDYDEDEDEAIEGNSRGQNGHGHEDEDEHEEKGSRKRRKTGVFSLISSLMQQLNSELMSVIQDGGRSTWEKKHWMKLRLMQLEEQQVSYQCQAFELEKQRLKWVKFSSKKEREMERAKLENERRRLEGERMVLLIRQKELELLDIHQQQQLSSNKRS 477
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6AQT1 ((nucleolar transcription factor 1-B-like isoform X1 {ECO:0000313|RefSeq:XP_022767190.1}))
HSP 1 Score: 465.692 bits (1197), Expect = 6.058e-159
Identity = 284/490 (57.96%), Postives = 351/490 (71.63%), Query Frame = 0
Match: A0A6P6AQT1 ((nucleolar transcription factor 1-B-like isoform X1 {ECO:0000313|RefSeq:XP_022767190.1}))
HSP 1 Score: 465.692 bits (1197), Expect = 6.058e-159
Identity = 284/490 (57.96%), Postives = 351/490 (71.63%), Query Frame = 0
Query: 1 MEGNGMPNGMFSGINSGMLGLEM----SPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKP-RTQQLTFSDDDEAGVGAEDSGG--KRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSC-------NGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEEEDDDEDDNDDEDEDNDE----VEGGARGHEHESDLDVKITSHKRTRNETYAPD-SNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQ-----QQHQS 466
ME N +P GMFSGI SGMLGLE QQ Q+LQ+ QNP N H H MV+F E DH +Q+QQ+VKQGYP+ +K RT L SD+DE G +D KR SPWQRMKWTD MVKLLIM V+YIGD+ G SEGND G+KK GG LQKKGKWKSVS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILG+GT+C+VVENQSLLDTMD LSPKMKEEV+KLLNSKHLFFREMCAYH+SC GA HS E ++S +Q QQ QQQR CLHSSDN+ N GR +TE K+ K S EE+DD++DD DD+++D+++ ++G +RG E + + D K +S KR R +A S Q+ ++E+ VIQDG++S+WEK+ WM++RLMQLEE ++ +Q +AFELEKQ++KW+KF KKER+ME +L NER RL+NERM L++RQKELEL+D Q QQH S
Sbjct: 1 METNALPGGMFSGIGSGMLGLETPLHPQQQQPQNLQSAQNPHNL----------HHHSQMVAFSHRETDH--SQHQQSVKQGYPFVSKTKRTSPL--SDEDEPGFTHDDGAADAKRKFSPWQRMKWTDNMVKLLIMAVYYIGDEIG-SEGNDPTGKKKAGG---LLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGTACRVVENQSLLDTMD-LSPKMKEEVKKLLNSKHLFFREMCAYHSSCGHGAAAGTSGANHSPEVATETSQIQHQQAQQQR--CLHSSDNAQIAGNSGRIETEVPKLSKVGSEEEDDDEDDDEDDDEDDDEDVEEAMDGHSRGQEDDEENDEK-SSRKRPRKGAFAMSLSPLMQQLSSEVMNVIQDGSRSAWEKKHWMKMRLMQLEEQQVSYQYKAFELEKQRLKWVKFSGKKEREMERAKLENERSRLENERMGLLVRQKELELVDLQRHNRPQQHSS 468
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2KQG8 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 463.381 bits (1191), Expect = 2.291e-158
Identity = 271/486 (55.76%), Postives = 327/486 (67.28%), Query Frame = 0
Match: A0A6N2KQG8 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 463.381 bits (1191), Expect = 2.291e-158
Identity = 271/486 (55.76%), Postives = 327/486 (67.28%), Query Frame = 0
Query: 1 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQN-QQAVKQGYPYGA--KPRTQQLTFSDDDEAGVGAEDSG--GKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSCN-------GGAQHSAE-AGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEE---EDDDEDDNDDE----DEDNDEVEGGAR-----GHEHESDLDVKITSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQ 461
ME NG G+F GI SGMLGLE+ P+N QNPN H HH V HH + N QQ+VK YPY + KP+ SD+DE +DS GKR SPWQRMKWTD MV+LLIM VFYIGD+ G SEG+D G+KK GG A QKKGKWKSVS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILGKGT+C+VVE+Q+LLDTMD LSPK KEE+RKLLNSKHLFFREMC YH SC G HS E A S Q QQQ + C HS++N+ V N RT+TEGSKM K EE EDDD + ND+E D++++ +EG +R G E D + +S KR R + ++ S+ Q+ N E+ V+QDG KSSWEK WMR+RLMQLEE ++ +QCQAFELEKQ++KW+KF KKER+ME +L NER RL+NERMVLI+R+KELELLD+Q
Sbjct: 1 MEHNGKGGGIFPGIGSGMLGLEL---------PLHPPENSQNPN------HLHHPQVV----AYSHHESDNRQQSVKHAYPYASSSKPKLLLSPLSDEDEPSFTGDDSTTDGKRKMSPWQRMKWTDHMVRLLIMAVFYIGDEIG-SEGSDPIGKKKPGGL--AQQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVEDQNLLDTMD-LSPKTKEELRKLLNSKHLFFREMCVYHNSCGHAPSWVAFGNNHSPEMATGPSHAQHLQAAQQQHQRCSHSTENTQAVTN-SRTETEGSKMAKRARNEEDAVEDDDYESNDEEVHYEDDEDEAIEGDSRHQNGHGQGDEEDHHDEKSSRKR-RKDVFSTTSSLMQQLNGEIMNVLQDGAKSSWEKNHWMRLRLMQLEEQQVSYQCQAFELEKQRLKWVKFSSKKEREMERVKLENERSRLENERMVLIVRKKELELLDTQ 461
BLAST of DCAR_017636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A803QZY1 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 464.151 bits (1193), Expect = 5.974e-158
Identity = 276/490 (56.33%), Postives = 345/490 (70.41%), Query Frame = 0
Match: A0A803QZY1 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 464.151 bits (1193), Expect = 5.974e-158
Identity = 276/490 (56.33%), Postives = 345/490 (70.41%), Query Frame = 0
Query: 1 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQQLTFSDDDEAGVGAEDSGG--KRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSC--------NG---GAQHSAEAGAD--SSHVQQQQQQQQRRT----CLHSSDNSPNVHNLGRTDTE-GSKMMKG-------VSVEEEDDDEDDNDDEDEDNDEVEGGARG---HEHESDLDVK-ITSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLD 459
ME NG+ G+FS + +GMLGLE+ QQ QQNP N QNP+L +H MV++G ++ DHH Q Q +VK GYPY K + T SD+D+ G GA+D+ G KR SPWQRMKWTD MV+LLIM V+YIGD+ SE D A +KK GG LQKKGKWK+VS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILGKGT+CKVVENQSLLDTMD L+PK+KEEVRKLLNSKHLFFREMCAYH SC NG GA HS+E SS+VQ QQ QQ++ C H++DNS V NL R TE GSK++K ++EDDD+ D+ D+DED+DE EGG+RG H HE DV + KR R + S Q+ + E+ VIQDG+KSSWEK+QW++ R++QLEE +++ QC+AFELEKQ++KW+KF KKER+ME + NE+ RL+NERMVL++RQKELE+L+
Sbjct: 1 MEANGLGGGLFSTMGAGMLGLEIPLQQ-----QQQNPSNTQNPHLL-----SHSQMVAYGHHDSDHH-PQAQPSVKHGYPYAPKSKQIPPTLSDEDDLGFGADDNSGDGKRKMSPWQRMKWTDTMVRLLIMAVYYIGDENS-SEAIDPANKKKPTGG--LLQKKGKWKTVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQSLLDTMD-LAPKIKEEVRKLLNSKHLFFREMCAYHNSCSHAGATTTNGVASGANHSSELATSEPSSNVQPNQQNQQQQQQQQRCFHATDNSHVVSNLSRPGTEHGSKVVKASGSGGEDEEDDDEDDDDSDDYDDDEDDDEAEGGSRGPIGHGHEDIDDVSHVRLRKRPRKGVLSESSQLIQQLSCEILGVIQDGSKSSWEKKQWLKSRMIQLEEQQVNFQCEAFELEKQRLKWVKFSSKKEREMEKAKFENEKRRLENERMVLLIRQKELEVLE 475
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BZJ5 | E-Value: 1.287e-168, PID: 59.83 | (Putative stress response protein NST1 {ECO:000031... [more] |
| A0A7J7GJ30 | E-Value: 2.720e-168, PID: 58.28 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A251K4M8 | E-Value: 7.832e-167, PID: 57.26 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A6J1AQ18 | E-Value: 3.581e-165, PID: 58.49 | (transcriptional regulator EFH1 isoform X1 {ECO:00... [more] |
| A0A6A6M5D5 | E-Value: 5.229e-164, PID: 56.87 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A6I9U9V3 | E-Value: 5.522e-162, PID: 55.06 | (uncharacterized protein LOC105174138 {ECO:0000313... [more] |
| A0A2C9VCP2 | E-Value: 5.197e-160, PID: 54.93 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A6P6AQT1 | E-Value: 6.058e-159, PID: 57.96 | (nucleolar transcription factor 1-B-like isoform X... [more] |
| A0A6N2KQG8 | E-Value: 2.291e-158, PID: 55.76 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A803QZY1 | E-Value: 5.974e-158, PID: 56.33 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |