Resource Type:
Polypeptide
Name:
DCAR_017808
Identifier:
DCAR_017808.mRNA-protein
Sequence:
MPALINYRRGDDEFYSAGSACCADSALFFSTNSNVHNVYGPSRKRARITS
PFAFDGHMFETEKPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLML
LSSIRNSEIYQKQEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATD
IRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSL
WNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAI
TIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVL
SKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGL
LSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVK
VAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLEN
PVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTG
LLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKI
TDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCS
NISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDILYGDH
TPLLI*
Sequence Length:
656
Sequence Checksum:
53193b9846873b41772f8ffb4f71dcca
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_017808, derives from mRNA, DCAR_017808. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BBV5 (F-box domain-containing protein {ECO:0000259|SMART:SM00256})
HSP 1 Score: 1121.69 bits (2900), Expect = 0.000e+0
Identity = 557/661 (84.27%), Postives = 605/661 (91.53%), Query Frame = 0
Match: A0A6L5BBV5 (F-box domain-containing protein {ECO:0000259|SMART:SM00256})
HSP 1 Score: 1121.69 bits (2900), Expect = 0.000e+0
Identity = 557/661 (84.27%), Postives = 605/661 (91.53%), Query Frame = 0
Query: 1 MPALINYRRGDDEFYSAGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEKPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQKQ------EVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDILYGDHTPLLI 655
MPAL+NYR GDDEFYSAGSAC ADSALFFS SNV +VYGPSRKRARI+SPFAF+ MFE ++ SIEILP+ECLFEIFRHLPGGQERSAAACVSK WLM+LSS+RN+EIY+ + EVC+ QD++M + DE KED C+GYLTRCV+GKKATD+RLAAIAVGTATRGGLGKLSIRGSNS RGVTDLGLSAIAHGCPSLRVLSLWNVP +GDEGLLKIA+ECHLLEKLDLSECPS+SNKG++AVAENCPNLTA+TIESC +IGNESL+AIG CCPNLQS+T+KNCPLVGDQGVASLLS+ASAVLSKV+FQAL+ITDFSLAVIGHYGKAITNLVLGGL+ VSQKGFWALGSA GL SLESLLITSC GTTDVSLEAIGKGCPNLK MSLKKCCFVSD+GLVAFVKVAGSLKSLHLEECNRITQ GILG LSNCVSKLKSLA +KCMGIKDL LE P +PCESLRSLTIQNCL FGSASLA++GKLCPQLHHLDLSGLCAITD GLLPLLE C DGLVKVNLSDCLNLTD VV LARLHGETLEVLNL GCRK+TD SLAAIADNC LL+DLD+SKCS++DAGVAALSRGVQHNLQILSLSGCSN+SNKSM SL +LGK LVGLNIQ CNLISSSAIELLLE+LWRCDILYG +T + I
Sbjct: 1 MPALVNYR-GDDEFYSAGSACSADSALFFSIGSNV-DVYGPSRKRARISSPFAFESQMFEEKRSSIEILPEECLFEIFRHLPGGQERSAAACVSKQWLMILSSVRNTEIYKSESTQAGEEVCKSAQDVEMTTVDEIKEDDCEGYLTRCVDGKKATDLRLAAIAVGTATRGGLGKLSIRGSNSIRGVTDLGLSAIAHGCPSLRVLSLWNVPSIGDEGLLKIARECHLLEKLDLSECPSISNKGLVAVAENCPNLTAVTIESCRKIGNESLQAIGRCCPNLQSLTIKNCPLVGDQGVASLLSAASAVLSKVRFQALNITDFSLAVIGHYGKAITNLVLGGLQNVSQKGFWALGSARGLQSLESLLITSCRGTTDVSLEAIGKGCPNLKQMSLKKCCFVSDNGLVAFVKVAGSLKSLHLEECNRITQFGILGTLSNCVSKLKSLAFVKCMGIKDLALETPTLTPCESLRSLTIQNCLAFGSASLAIVGKLCPQLHHLDLSGLCAITDDGLLPLLESCVDGLVKVNLSDCLNLTDNVVAALARLHGETLEVLNLEGCRKVTDASLAAIADNCSLLSDLDVSKCSISDAGVAALSRGVQHNLQILSLSGCSNVSNKSMPSLGKLGKNLVGLNIQLCNLISSSAIELLLENLWRCDILYGVNTSVPI 659
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AM40 ((Putative EIN3-binding F-box protein 1-like {ECO:0000313|EMBL:MPA57862.1}))
HSP 1 Score: 956.051 bits (2470), Expect = 0.000e+0
Identity = 484/656 (73.78%), Postives = 554/656 (84.45%), Query Frame = 0
Match: A0A5B7AM40 ((Putative EIN3-binding F-box protein 1-like {ECO:0000313|EMBL:MPA57862.1}))
HSP 1 Score: 956.051 bits (2470), Expect = 0.000e+0
Identity = 484/656 (73.78%), Postives = 554/656 (84.45%), Query Frame = 0
Query: 1 MPALINYRRGDDEFYSAGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMF-ETEKPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQKQ---------EVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 646
MPAL+NY GDDEFYS GS DS+L S S+V +V+ P RKR+RI++PF F GH F E +KPSIE+LPDECLFEIFR L GGQERSA ACVS WLMLLSS+RNSEI + +V EP DI+M+S +E +E DGYLTRC+EGKKATDIRLAAIAVGTA+RGGLGKLSIRGSNS+RGVT+LGLSAIAHGCPSLRVLSLWNVP +GDEGLL+I++ECHLLEKLDL +CPS+SNKG++A+AE CPNLTA+TIESC IGNESL+AIG CCP LQSIT+++CPLVGDQG+A+L SSAS VL+KVK Q L+ITDFSLAVIGHYGKA+TNL+L GL+ VS+KGFW +G+A GL L SL ITSC GTTD SLEAIGKGC NLK M L+KCCFVS+ GLV+F K AGSL+SL LEECNRITQSGILGALSNC SKLKSL+L+KCMGIKDL LE P+ SPC SLRSL+I+ C GFGSASLA++GKLCPQLHH+DLSGL ITD GLLPLLE CE GLVKVNLS CLNLTDKVV+ ARLHG TLE+LNL GCRKITD SL AIADNC LLNDLD+S+CS+TD+G+AALS G Q NLQILSLSGCS +SNKS+ SL +LGKTLVGLN+Q CN ISSS +ELL+ SLWRCDIL
Sbjct: 1 MPALVNYS-GDDEFYSGGSVYSMDSSLLLSIGSHV-DVFCPPRKRSRISAPFVFRGHEFSEEKKPSIEVLPDECLFEIFRRLSGGQERSACACVSNRWLMLLSSVRNSEICKSNGSQGGSALNKVDEPLNDIEMISGEEDQELGSDGYLTRCLEGKKATDIRLAAIAVGTASRGGLGKLSIRGSNSSRGVTNLGLSAIAHGCPSLRVLSLWNVPSIGDEGLLEISRECHLLEKLDLCQCPSISNKGLMAIAEKCPNLTALTIESCSNIGNESLQAIGRCCPKLQSITLRDCPLVGDQGIANLFSSASPVLTKVKLQVLNITDFSLAVIGHYGKAVTNLILSGLQNVSEKGFWVMGNAQGLQRLASLTITSCRGTTDASLEAIGKGCLNLKQMCLRKCCFVSNGGLVSFAKAAGSLESLQLEECNRITQSGILGALSNCGSKLKSLSLVKCMGIKDLALETPILSPCNSLRSLSIRFCPGFGSASLAMVGKLCPQLHHIDLSGLYGITDAGLLPLLESCEAGLVKVNLSGCLNLTDKVVLATARLHGGTLELLNLDGCRKITDASLVAIADNCSLLNDLDVSRCSITDSGIAALSHGEQLNLQILSLSGCSEVSNKSLPSLRKLGKTLVGLNLQHCNSISSSTVELLVHSLWRCDIL 654
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AR22 ((Putative EIN3-binding F-box protein 1-like {ECO:0000313|EMBL:MPA57861.1}))
HSP 1 Score: 955.281 bits (2468), Expect = 0.000e+0
Identity = 484/656 (73.78%), Postives = 554/656 (84.45%), Query Frame = 0
Match: A0A5B7AR22 ((Putative EIN3-binding F-box protein 1-like {ECO:0000313|EMBL:MPA57861.1}))
HSP 1 Score: 955.281 bits (2468), Expect = 0.000e+0
Identity = 484/656 (73.78%), Postives = 554/656 (84.45%), Query Frame = 0
Query: 1 MPALINYRRGDDEFYSAGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEK-PSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQK---------QEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 646
MPALINY GDDEFYS GS DS+L S ++V +V+ P RKR+RI++PF F GH FE EK PSIE+LPDECLFEIFR LPGGQERSA A VSK WLMLLSS+RNSEI + +V E DI+M+S DE +E DG+LTRC+EGKKATDIRLAA+AVGTA+RGGLGKLSIRGSNS+RGVT+LGLSAIAHGCPSLRVLSLWNVP +GDEGLL+IA+ECHLLEKLDL +CPS+SNKG++A+A+ CPNLTA+TIESC IGNESL+AIG CCP LQSIT+++CPLVGDQG+A+L SSAS VL+KVK Q L+ITDFSLAVIGHYGKA+TNL+L GL+ VS+KGFW +G+A GL L SL ITSC GTTD SLEAIGKGC NLK M L+KCCFVS+ GLV+F K AGSL+SL LEECNRITQSGILGALSNC SKLKSL+L+KCMGIKDL LE P+ SPC SLRSL+I+ C GFGSASLA++GKLCPQLHH+DLSGL ITD GLLPLLE CE GLVKVNLS CLNLTDKVV+ ARLHG TLE+LNL GCRKITD SL AIADNC LLNDLD+S+CS+TD+G+AALS G Q NLQILSLSGCS +SNKS+ SL +LGKTLVGLN+Q CN ISSS +ELL+ SLWRCDIL
Sbjct: 1 MPALINYS-GDDEFYSEGSIYSMDSSLLLSFGNHV-DVFCPPRKRSRISAPFLFRGHEFEEEKKPSIEVLPDECLFEIFRRLPGGQERSACASVSKRWLMLLSSVRNSEICRSTDAQGGSAVNKVDESVNDIEMISGDEDRELESDGFLTRCLEGKKATDIRLAAVAVGTASRGGLGKLSIRGSNSSRGVTNLGLSAIAHGCPSLRVLSLWNVPSIGDEGLLEIARECHLLEKLDLCQCPSISNKGLMAIAKKCPNLTALTIESCSNIGNESLQAIGRCCPKLQSITLRDCPLVGDQGIANLFSSASPVLTKVKLQVLNITDFSLAVIGHYGKAVTNLILSGLQNVSEKGFWVMGNAQGLQRLASLTITSCRGTTDASLEAIGKGCLNLKQMCLRKCCFVSNGGLVSFAKAAGSLESLQLEECNRITQSGILGALSNCGSKLKSLSLVKCMGIKDLALETPILSPCNSLRSLSIRFCPGFGSASLAMVGKLCPQLHHIDLSGLYGITDAGLLPLLESCEAGLVKVNLSGCLNLTDKVVLATARLHGGTLELLNLDGCRKITDASLVAIADNCSLLNDLDVSRCSITDSGIAALSHGEQLNLQILSLSGCSEVSNKSLPSLRKLGKTLVGLNLQHCNSISSSTVELLVHSLWRCDIL 654
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G2R1 (F-box domain-containing protein {ECO:0000259|SMART:SM00256})
HSP 1 Score: 918.687 bits (2373), Expect = 0.000e+0
Identity = 477/649 (73.50%), Postives = 548/649 (84.44%), Query Frame = 0
Match: A0A7J7G2R1 (F-box domain-containing protein {ECO:0000259|SMART:SM00256})
HSP 1 Score: 918.687 bits (2373), Expect = 0.000e+0
Identity = 477/649 (73.50%), Postives = 548/649 (84.44%), Query Frame = 0
Query: 1 MPALINYRRGDDEFYSAGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEKPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQKQ--EVCEPTQDIDMVSADETKE-DSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 646
MPAL+NY GDDEFYS GS DS+L S Y P KRARITSPFAF G+MFE PSIE+LPDECLFEIFR LPGGQ RSA+ACVSK WLMLLSS+RNSEI + + +V E + D+DM+S++E E DG LTRC+EGKKATDIRLAAIAVGT++RGGLGKLSIRGSN+TRGVT GLSAIAHGCPSLRVLSLWNVP +GDEGL +IA+ECHLLEKLDL +CPS+SNKG+IA+AEN PNL+ +TIESCP+IGNESL+AI CCP LQSIT+++CPLVGDQGVASLLSSAS+VL+KVK QALS+TDFSLAVIGHYGKA+T+L+L GL+ VS++GFW +G+A GL L SL ITSC GTTDVSLEAIGKGC NLK M L+KCCFVSDSGLVAF K AGSL+SL LEECNRITQSGILGALSN SKLKSLAL+KCMGIKDL +E P SPCESL L I+NC GFGSASLA +GKLCPQLHH+DLSGLC ITD GLLPL+E CE GL+K+NLS C NLTD+VV +ARLHG TLEVLNL GC K+TD +L AI+D+CL+LNDLD+SKCS+TD+G+AALSRG Q NLQILSLS CS +SNKS SL +LGKTLVGLN+Q CN I++S +ELL+ESLWRCDIL
Sbjct: 1 MPALVNYS-GDDEFYSGGSVYSMDSSLLCSIG------YCPPSKRARITSPFAFSGNMFEERAPSIEVLPDECLFEIFRRLPGGQSRSASACVSKRWLMLLSSVRNSEICKSKNAKVNESSDDVDMISSNEDLELKGDDGCLTRCLEGKKATDIRLAAIAVGTSSRGGLGKLSIRGSNATRGVTCHGLSAIAHGCPSLRVLSLWNVPCIGDEGLFEIARECHLLEKLDLCQCPSISNKGLIAIAENSPNLSTLTIESCPKIGNESLQAIARCCPKLQSITIRDCPLVGDQGVASLLSSASSVLTKVKLQALSLTDFSLAVIGHYGKALTSLILSGLQNVSERGFWVMGNAQGLERLASLTITSCRGTTDVSLEAIGKGCHNLKQMCLRKCCFVSDSGLVAFAKAAGSLESLQLEECNRITQSGILGALSNGGSKLKSLALVKCMGIKDLSVETPSLSPCESLHCLCIRNCPGFGSASLATVGKLCPQLHHVDLSGLCGITDAGLLPLVESCEAGLIKMNLSGCSNLTDEVVSAIARLHGGTLEVLNLDGCNKVTDATLVAISDHCLILNDLDLSKCSITDSGIAALSRGEQLNLQILSLSSCSKVSNKSTSSLRKLGKTLVGLNLQHCNSINNSMVELLMESLWRCDIL 642
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HCS8 ((EIN3-binding F box protein 1 {ECO:0000313|EMBL:GFZ20869.1}))
HSP 1 Score: 908.672 bits (2347), Expect = 0.000e+0
Identity = 460/638 (72.10%), Postives = 533/638 (83.54%), Query Frame = 0
Match: A0A7J0HCS8 ((EIN3-binding F box protein 1 {ECO:0000313|EMBL:GFZ20869.1}))
HSP 1 Score: 908.672 bits (2347), Expect = 0.000e+0
Identity = 460/638 (72.10%), Postives = 533/638 (83.54%), Query Frame = 0
Query: 10 GDDEFYSAGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEK-PSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQKQEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 646
GDDEFY GS DS+ S S++ +VY P KRARI+S +A ++FE EK PSIE+LPDECLFEIFR L GG+ RSAA CVSK WLM+LSS+RNSEI + + E D+DM S++E E DGYLTRC+EGKKATD+RLAAIAVGTA+RGGLGKLS+RGSNS G+T+LGLSA+A GCPSLRVLSLWN P +GDEGL +IAKECHLLEKLDL +CPS+SNKG+IA+A+N PNL+A+TIESC IGNESL+AI CCPNLQSIT+++CPLVGDQGVASLLSSA + L KVK QALSITDFSLAVIGHYGK +T+L+L GL+ VS+KGFW +G+A GL L SL I+SC GTTD SLEAIGKGC NLK M L+KCCFVSDSGL AF K +GSL+SL LEECNRIT+ GI ALSNC SKLKSLAL+KCMGIKDL LE P+ SPCESLRSL+I++C GFGSASLAV+GKLCP LHH+DLSGLC ITD GLLPL+E CE GLVKVNLS CLNLTDKVV+ +ARLHG TLEVLNL GC K+TD SL AIAD C +LNDLD+SKCS+TD+GVAALSRG Q NLQILS SGCS +SNKS+ SL +LGKTLVGLN+Q CNLIS++ +ELL+E LWRCDIL
Sbjct: 16 GDDEFYFGGSVYAMDSSPLCSIGSHL-DVYCPPSKRARISSSYASSFNIFEEEKTPSIEVLPDECLFEIFRRLSGGEARSAATCVSKRWLMVLSSVRNSEICKTKN--ESLNDVDMTSSNEDLELESDGYLTRCLEGKKATDVRLAAIAVGTASRGGLGKLSVRGSNSMCGITNLGLSAVARGCPSLRVLSLWNAPSIGDEGLFEIAKECHLLEKLDLCQCPSISNKGLIAIAQNSPNLSALTIESCQNIGNESLQAISRCCPNLQSITIRDCPLVGDQGVASLLSSAPSALKKVKLQALSITDFSLAVIGHYGKTLTSLILSGLQNVSEKGFWVMGTAHGLEKLVSLTISSCRGTTDASLEAIGKGCHNLKQMCLRKCCFVSDSGLAAFAKASGSLESLQLEECNRITELGIFSALSNCGSKLKSLALVKCMGIKDLVLETPLLSPCESLRSLSIRSCPGFGSASLAVVGKLCPHLHHVDLSGLCGITDAGLLPLVESCEAGLVKVNLSGCLNLTDKVVLAVARLHGGTLEVLNLDGCSKVTDASLFAIADYCFVLNDLDLSKCSITDSGVAALSRGEQLNLQILSFSGCSKVSNKSIPSLRKLGKTLVGLNLQHCNLISNNTVELLMEDLWRCDIL 650
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T867 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_011078374.1}))
HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0
Identity = 453/648 (69.91%), Postives = 542/648 (83.64%), Query Frame = 0
Match: A0A6I9T867 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_011078374.1}))
HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0
Identity = 453/648 (69.91%), Postives = 542/648 (83.64%), Query Frame = 0
Query: 1 MPALINYRRGDDEFYS-AGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEKPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQKQEVCEPTQDIDMVSADETKED-SCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 646
MPAL+N R GDD+FYS GS C DS + FS +S+V +Y P RKR+RI+ P+ ++FE ++PSI++LPDECLFEIFR LPGG+ERSA+ACVSK WL +LSS+R+SE + + + I + A ED CDGYLTRCVEGKKATD+RLAAIAVGT++RGGLGKLSIRGSN+ RG+++ GLSAIA GCPSLRVLSLWNVP +GDEG+ +IA+ECH LEKLDL +CPS+SN G+ A+AE+CPNLT++TIESCP IGNESL+AI CP LQSIT+K+C LVGDQG+ASLLSSAS VL+K+K QAL+ITD+S+AVIGHYG +ITNLVL GL+ VSQKGFW +G+A GL +L SL ITSC G TD+SLEA+G+GCPNLKHM L+KCCFVSD+GLVAF K AGSL+SL LEE NRITQ GIL ALS+C+SKLKS++L+KCMGIKDL E P+ SPCESLR L+I++C GFGS SLA++GKLCPQLHHLDLSGLC ITD GLLPLLE CE GL KVNLSDC NLTD+VV+ LARLHGETLE+LNL GC+KITD SLAA+A++C LLNDLD+SKCS+TD GV ALS G QHNLQILS SGCS ISNK +L +LG+TLVGLN+Q CN ISS++IELL E+LWRCDIL
Sbjct: 1 MPALVNIR-GDDDFYSEGGSLCSGDSGVVFSISSHVE-IYCPPRKRSRISGPYIVSRNLFEDKRPSIDVLPDECLFEIFRRLPGGRERSASACVSKRWLTVLSSVRSSEFNRSKIPQGQPKTISIEKAVNNTEDIECDGYLTRCVEGKKATDVRLAAIAVGTSSRGGLGKLSIRGSNALRGISNFGLSAIARGCPSLRVLSLWNVPSIGDEGIFEIARECHSLEKLDLCQCPSISNSGLAAIAESCPNLTSLTIESCPNIGNESLQAIAKFCPKLQSITIKDCALVGDQGIASLLSSASTVLTKLKLQALNITDYSVAVIGHYGMSITNLVLCGLQNVSQKGFWVMGNAKGLQTLSSLTITSCKGVTDLSLEAVGRGCPNLKHMCLRKCCFVSDNGLVAFAKAAGSLESLQLEEVNRITQLGILTALSSCISKLKSVSLVKCMGIKDLSTEFPMLSPCESLRCLSIRSCPGFGSTSLAMVGKLCPQLHHLDLSGLCGITDAGLLPLLESCETGLAKVNLSDCSNLTDEVVLALARLHGETLELLNLDGCQKITDASLAALAESCPLLNDLDVSKCSITDTGVVALSHGSQHNLQILSFSGCSMISNKCRPALEQLGRTLVGLNLQHCNSISSNSIELLTENLWRCDIL 646
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0E4N9 ((EIN3-binding F box protein 1 {ECO:0000313|EMBL:GFY80909.1}))
HSP 1 Score: 902.123 bits (2330), Expect = 0.000e+0
Identity = 457/639 (71.52%), Postives = 537/639 (84.04%), Query Frame = 0
Match: A0A7J0E4N9 ((EIN3-binding F box protein 1 {ECO:0000313|EMBL:GFY80909.1}))
HSP 1 Score: 902.123 bits (2330), Expect = 0.000e+0
Identity = 457/639 (71.52%), Postives = 537/639 (84.04%), Query Frame = 0
Query: 10 GDDEFYSAGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETE-KPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQK-QEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 646
GDDEFYS GS DS+L S +S++ ++Y P KRARI+SPFA G MFE E KP IE+LPDECL+EIFR LPGGQ RSA+ACVSKHWL LLSS+RNSEI + +V E + D+DM+S +E E CDGYLTR +EGKKATDIRLAAIAVG A+RGGLGKLSIRGSN RGVT+ GLSAIAH CPSLRVLSLWNVP +GDEG+ +IAKECHLLEKLDL CPS+SNKG+IA+A N PNLTA+TIESC IGNESL+AIG CCP LQSIT+K+CP +GDQGVA L+SS S+ L+KVK Q LS+TDFSLAVIGHYGKA+T+L+ GL+ V++KGFW +G+A GL L +L ITSC GTTDV LEAIGKGC NLK MSL KCCFVSDSGL+AF K AGSL+SL LEECNRITQSGILGAL NC SK+KSLAL+KCMGIKDL LE P SPCESLRSL+I++C GFGS SLA++G LCPQLHHLDLSGLC ITD+GLLPL+E C+ GLVKVNL+ CLNLTD+VV LARLHG TLEVLNL GC K+TD SL A+AD+CL+L+DL++SKCS+TD G+A+LS G Q NLQ+LS+SGC+ +SNKSM L +LG+TLVGLN+QQCN IS++ ++LL+ESLWRCDIL
Sbjct: 10 GDDEFYSGGSVYSMDSSLLRSISSHL-DMYCPPSKRARISSPFASSGDMFEEERKPFIEVLPDECLYEIFRRLPGGQARSASACVSKHWLALLSSVRNSEICKNVSKVNESSNDVDMLSCEEGLEMECDGYLTRSLEGKKATDIRLAAIAVGLASRGGLGKLSIRGSNPVRGVTNKGLSAIAHSCPSLRVLSLWNVPYVGDEGMYEIAKECHLLEKLDLCRCPSISNKGLIAIAMNSPNLTALTIESCRNIGNESLQAIGSCCPKLQSITIKDCPHIGDQGVARLVSSTSSSLTKVKLQGLSLTDFSLAVIGHYGKALTSLIFSGLQNVTEKGFWVMGNAQGLEKLATLSITSCRGTTDVCLEAIGKGCRNLKQMSLHKCCFVSDSGLIAFAKAAGSLESLQLEECNRITQSGILGALLNCGSKVKSLALVKCMGIKDLDLEKPFLSPCESLRSLSIRSCPGFGSVSLALVGNLCPQLHHLDLSGLCGITDSGLLPLVEGCDSGLVKVNLAGCLNLTDEVVSALARLHGGTLEVLNLDGCVKVTDASLVALADHCLVLSDLNVSKCSITDTGIASLSCGEQLNLQVLSISGCNKVSNKSMPYLRKLGRTLVGLNLQQCNSISTATVDLLVESLWRCDIL 647
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T3S9 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_027072993.1}))
HSP 1 Score: 901.738 bits (2329), Expect = 0.000e+0
Identity = 453/656 (69.05%), Postives = 538/656 (82.01%), Query Frame = 0
Match: A0A6P6T3S9 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_027072993.1}))
HSP 1 Score: 901.738 bits (2329), Expect = 0.000e+0
Identity = 453/656 (69.05%), Postives = 538/656 (82.01%), Query Frame = 0
Query: 1 MPALINYRRGDDEFYSAGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEK-PSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQK---------QEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 646
MPAL+NY GDD+FY+ S C ADS L S + +VY P RKR+R+++P+A D +F+ E+ PSIE LPDECLFEIFR LPG QERSA+ACVSK WLMLLSS+RNSE + +EV + D++M+SAD E C+GYLTR +EGKKATD+RLAAIAVGTA RGGLGKLS+RG NS RGVT+ GLSAIAHGCPSLR LSLWNVP +GDEGL +IA+ECH LEKLDL +CPS+S+KG+ AVA+NCP+L+A+TIESC IGNESL+AIG CP LQSIT+K+CPL+GDQGVA LLSSAS L+KVK Q L+I+DFSLAVIGHYGK+ITNLVL GL+ VSQKGFW +G+A GL L SL ITSC GT+D+SLEA+GKGCPNL+ M L+KCCFVSD+GLVAF K AGSL+ L LEECNRIT++GIL ALSNC SKLKSL+++KCMGIK + E P SPCESLRSL+I++C F S SLA++GKLCPQLHHLDLSGLC ITD LLPLLE CE LVKVNLSDC NLTDKV++ LA LHG TLE+LNL GC+K+TD SL AIAD+CL LNDLD+SKCS+TD+GVAALS GV NLQ+LSLSGCS +SN+S+ L +LG+TLVGLN+Q CN ISSS+IE L+E+LWRCDIL
Sbjct: 1 MPALVNYG-GDDDFYAGRSICSADSGLVLS----IADVYCPPRKRSRVSAPYAVDSRLFDKERNPSIETLPDECLFEIFRRLPGAQERSASACVSKRWLMLLSSVRNSEFCRSNSPQEQLATKEVKKTESDVEMISADGDMEIECNGYLTRSLEGKKATDVRLAAIAVGTACRGGLGKLSVRGCNSVRGVTNNGLSAIAHGCPSLRALSLWNVPAIGDEGLFEIARECHSLEKLDLCQCPSISDKGLAAVAKNCPSLSALTIESCSNIGNESLQAIGSYCPKLQSITIKDCPLIGDQGVAGLLSSASVALTKVKLQVLNISDFSLAVIGHYGKSITNLVLTGLQNVSQKGFWVMGNAQGLRMLSSLTITSCRGTSDLSLEALGKGCPNLRQMCLRKCCFVSDNGLVAFAKAAGSLECLQLEECNRITETGILNALSNCNSKLKSLSIVKCMGIKSMPSETPALSPCESLRSLSIRSCPWFNSTSLALVGKLCPQLHHLDLSGLCGITDAALLPLLESCES-LVKVNLSDCGNLTDKVIIALAELHGATLELLNLEGCKKVTDASLVAIADSCLFLNDLDVSKCSITDSGVAALSNGVHLNLQVLSLSGCSMVSNRSLPHLKKLGETLVGLNLQHCNSISSSSIERLVENLWRCDIL 650
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SRQ8 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_027068633.1}))
HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 454/656 (69.21%), Postives = 536/656 (81.71%), Query Frame = 0
Match: A0A6P6SRQ8 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_027068633.1}))
HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 454/656 (69.21%), Postives = 536/656 (81.71%), Query Frame = 0
Query: 1 MPALINYRRGDDEFYSAGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEK-PSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQK---------QEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 646
MPAL+NY GDD+FY+ S C ADS L S + +VY P RKR+R+++P+A D +F E+ PSIE LPDECLFEIFR LPG QERSA+ACVSK WLMLLSS+RNSE + +EV + D++M SAD E C+GYLTR +EGKKATD+RLAAIAVGTA RGGLGKLS+RG NS RGVT+ GLSAIAHGCPSLR LSLWNVP +GDEGL +IA+ECH LEKLDL +CPS+S+KG+ AVA+NCPNL+A+TIESC IGNESL+AIG CP LQSIT+K+CPL+GDQGVA LLSSAS L+KVKFQ L+I+DFSLAVIGHYGK+ITNLVL GL+ VSQKGFW +G+A GL L SL ITSC GT+D+SLEA+GKGCPNL+ M L+KCCFVSD+GLVAF K AGSL+ L LEECNRIT++GIL ALSNC SKLKSL+++KCMGIK + E P SPCESLRSL+I++C F S SLA++GKLCPQLHHLDLSGLC ITD LLPLLE CE LVKVNLSDC LTDKV++ LA LHG TLE+LNL GC+K+TD SL AIAD+CL LNDLD+SKCS+TD+GVAALS GV NLQ+LSLSGCS +SN+S+ L +LG+TLVGLN+Q CN ISSS+IE L+E+LWRCDIL
Sbjct: 1 MPALVNYG-GDDDFYTGRSICSADSGLVLS----IADVYCPPRKRSRVSAPYAVDSRLFNKERNPSIETLPDECLFEIFRRLPGAQERSASACVSKRWLMLLSSVRNSEFCRSNSPQEQLATKEVKKTESDVEMNSADGDMEIQCNGYLTRSLEGKKATDVRLAAIAVGTACRGGLGKLSVRGCNSVRGVTNNGLSAIAHGCPSLRALSLWNVPAIGDEGLFEIARECHSLEKLDLCQCPSISDKGLAAVAKNCPNLSALTIESCSNIGNESLQAIGSYCPKLQSITIKDCPLIGDQGVAGLLSSASVALTKVKFQVLNISDFSLAVIGHYGKSITNLVLTGLQNVSQKGFWVMGNAQGLQMLSSLTITSCRGTSDLSLEALGKGCPNLRQMCLRKCCFVSDNGLVAFAKAAGSLECLQLEECNRITETGILNALSNCNSKLKSLSIVKCMGIKSMPSETPALSPCESLRSLSIRSCPWFNSTSLALVGKLCPQLHHLDLSGLCGITDAALLPLLESCES-LVKVNLSDCGILTDKVIIALAELHGATLELLNLEGCKKVTDASLVAIADSCLFLNDLDVSKCSITDSGVAALSNGVHLNLQVLSLSGCSMVSNRSLPHLKKLGETLVGLNLQHCNSISSSSIERLVENLWRCDIL 650
BLAST of DCAR_017808 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4F251 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 899.812 bits (2324), Expect = 0.000e+0
Identity = 467/642 (72.74%), Postives = 544/642 (84.74%), Query Frame = 0
Match: A0A4S4F251 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 899.812 bits (2324), Expect = 0.000e+0
Identity = 467/642 (72.74%), Postives = 544/642 (84.74%), Query Frame = 0
Query: 10 GDDEFYSAGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEK-PSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQ----KQEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 646
GDDEFYS S DS+L S +S++ +VY P KRARI+SPFA G+MFE E+ PSI++LPDECLFEIFR LPGGQ RSA+ACVSK WLMLLS IRNSEI + + +V E + D+DM+S +E E DG+LTRC+EGKKATDIRLAAIAVGT++RGGLGKLSIRGSNST VT+ GL+AIAHGCPSLR LSLWNVP +GDEG+ +IAKECHLLEKLDL +CPS+SNKG+IA+AEN PNLTA+TIESCPRIGN+SL+AIG CCP LQSIT+++CP VGDQGVASLLSSAS+VL+KVK Q+LS TDFSLAVIGHYGKAIT+LVL GL+ VS+KGFW +G+A GL L SL ITSC GTTDVSLEAIGKGCPNLK M L+KCCFVSD GLVAF K AGSL++L LEECNR+TQSGIL ALSNC SKLKSLAL+KCMGIKDL E P+ +PCESL SL+I++C GFG ASLAV+GKLCPQLHH+DLSGL ITD+GLLPL+E CE GLV VNLS CLNLTDKVV +ARLH ETLEVLNL GC K+TD SL AIADNCL+LNDLD+SKCS+TD+G+AALS G Q NLQI+SLSGCS +SNKS+ L +LG+ LVGLN+Q CN IS++ +E L+ESLW+CDIL
Sbjct: 10 GDDEFYSRESIYSLDSSLLCSISSHL-DVYLPPSKRARISSPFASSGNMFEEERTPSIDVLPDECLFEIFRRLPGGQARSASACVSKRWLMLLSGIRNSEICKSKNAQSKVNESSNDVDMISGNEDLEIESDGHLTRCLEGKKATDIRLAAIAVGTSSRGGLGKLSIRGSNSTCRVTNDGLTAIAHGCPSLRALSLWNVPSIGDEGMFEIAKECHLLEKLDLCQCPSISNKGLIAIAENSPNLTALTIESCPRIGNDSLQAIGRCCPKLQSITIRDCPHVGDQGVASLLSSASSVLTKVKLQSLSFTDFSLAVIGHYGKAITSLVLSGLQNVSEKGFWVMGNARGLERLGSLTITSCRGTTDVSLEAIGKGCPNLKQMCLRKCCFVSDIGLVAFAKAAGSLENLQLEECNRLTQSGILSALSNCGSKLKSLALVKCMGIKDLASETPLLTPCESLCSLSIRSCPGFGDASLAVVGKLCPQLHHVDLSGLYGITDSGLLPLVESCEAGLVTVNLSGCLNLTDKVVSIMARLHSETLEVLNLDGCSKVTDASLVAIADNCLVLNDLDVSKCSITDSGIAALSHGDQLNLQIISLSGCSKVSNKSINFLRKLGENLVGLNLQHCNSISTTTVEQLMESLWKCDIL 650
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5BBV5 | E-Value: 0.000e+0, PID: 84.27 | F-box domain-containing protein {ECO:0000259|SMART... [more] |
| A0A5B7AM40 | E-Value: 0.000e+0, PID: 73.78 | (Putative EIN3-binding F-box protein 1-like {ECO:0... [more] |
| A0A5B7AR22 | E-Value: 0.000e+0, PID: 73.78 | (Putative EIN3-binding F-box protein 1-like {ECO:0... [more] |
| A0A7J7G2R1 | E-Value: 0.000e+0, PID: 73.50 | F-box domain-containing protein {ECO:0000259|SMART... [more] |
| A0A7J0HCS8 | E-Value: 0.000e+0, PID: 72.10 | (EIN3-binding F box protein 1 {ECO:0000313|EMBL:GF... [more] |
| A0A6I9T867 | E-Value: 0.000e+0, PID: 69.91 | (EIN3-binding F-box protein 1-like {ECO:0000313|Re... [more] |
| A0A7J0E4N9 | E-Value: 0.000e+0, PID: 71.52 | (EIN3-binding F box protein 1 {ECO:0000313|EMBL:GF... [more] |
| A0A6P6T3S9 | E-Value: 0.000e+0, PID: 69.05 | (EIN3-binding F-box protein 1-like {ECO:0000313|Re... [more] |
| A0A6P6SRQ8 | E-Value: 0.000e+0, PID: 69.21 | (EIN3-binding F-box protein 1-like {ECO:0000313|Re... [more] |
| A0A4S4F251 | E-Value: 0.000e+0, PID: 72.74 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |