MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYG
KKDFFQKVMLTNASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNW
IGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLLSQ
KNQELSGGNASSSSDEDDDLPKVMQGWLTIYNSDDPNSQFTKLSARAQLM
SKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGVTVPISAFIF
GSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELL
IDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVN
KSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPEF*
| Relationships |
|---|
| The polypeptide, DCAR_017053, derives from mRNA, DCAR_017053. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A068V7Q5 (Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (3.1.1.- {ECO:0000256|RuleBase:RU367093}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 284/399 (71.18%), Postives = 333/399 (83.46%), Query Frame = 0
Query: 1 MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYGKKDFFQKVMLTNASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNWIGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLLSQK--NQELSGGNASSSSDEDDDLPKVMQGWLTIYNSDDPNSQFTKLSARAQLMSKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGVT-VPISAFIFGSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELLIDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVNKSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPE 396
+GS +W+GLL+PLDLSLR+LILRCGDFCQATYD+F ND NSK+ GSSRYGKK FFQKVML NAS YQV CFLYATA++ +A LL +RSREAWDRESNWIGYIATTTDE S +LGRREIYVAWRGT+RDYEWI+VF +P SA L K ++++ S DE++ KVM GWLTIY S+DP S FTK SAR QL+SK+ L+++Y+ E +SITF GHSLGA+LS++SAFDL ENGVT +P+SA +FGSPQVG+K FND++ EF N+KILH++NKIDLIPLYPS LLGYVNTG L IDTRKSP+LKD+K+P DWHNLQ +LH+V+GWNG KGEFELKVKRSLALVNKSSA LKEEYL P +WWVEKNKGM IDENG+W APPADEDLPVPE
Sbjct: 15 LGSNNWEGLLDPLDLSLRNLILRCGDFCQATYDSFVNDANSKFAGSSRYGKKSFFQKVMLENASDYQVYCFLYATAQIGVPEAILLHTRSREAWDRESNWIGYIATTTDEVSKSLGRREIYVAWRGTSRDYEWIDVFSARPESADQLFKPKSWDKKVEANEDDSDEDEEEKATKVMYGWLTIYVSEDPKSSFTKTSARKQLLSKMKTLIEQYKDEKLSITFTGHSLGAALSILSAFDLVENGVTDIPVSAIVFGSPQVGNKAFNDRVLEFPNLKILHVKNKIDLIPLYPSGLLGYVNTGTLLEIDTRKSPHLKDSKNPSDWHNLQAILHVVNGWNGSKGEFELKVKRSLALVNKSSAFLKEEYLAPETWWVEKNKGMVIDENGDWILAPPADEDLPVPE 413
Match: A0A022RL19 (Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (3.1.1.- {ECO:0000256|RuleBase:RU367093}))
HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0
Identity = 280/400 (70.00%), Postives = 336/400 (84.00%), Query Frame = 0
Query: 1 MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYGKKDFFQKVMLTNASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNWIGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLLSQKN--QELSGGNASSSSDEDDDLPKVMQGWLTIYNSDDPNSQFTKLSARAQLMSKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGV-TVPISAFIFGSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELLIDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVNKSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPEF 397
+GS +W+ LL+PLDLSLR LILRCGDFCQATYDAFNND NSK+ G+SRYGKK FF KVML +A+ YQV CFLYATAKV +G+A L S SRE+WDRESNWIGYIATT+DE S + GRREIYV WRGTTR+YEW+NV +P SA+ LL KN ++ N S D+D+ +P+VM GWLTIY S DPNS FTKLSAR QL+ KI Q+ ++Y+ E++SIT GHSLGASL+++SAFDL ENGV +P+SA +FGSPQVG+K FND++ +FAN+K+LH+RNKIDLIPLYPS LLGY NTG+EL++D RKSP+LKD+KSPGDWHNLQ +LH+V GWNGD GEFELKVKRSLALVNKSSAILK+EYLIPGSWW+EKNKG+ +DE+GEW APP+DED PVPEF
Sbjct: 19 LGSNNWETLLDPLDLSLRRLILRCGDFCQATYDAFNNDVNSKFTGTSRYGKKSFFDKVMLDSAANYQVHCFLYATAKVGTGEALFLHSLSRESWDRESNWIGYIATTSDELSRSSGRREIYVVWRGTTRNYEWVNVLGARPESAQELLRPKNWDKKTPDDNDSDDDDDDEGVPRVMNGWLTIYMSTDPNSSFTKLSARTQLLKKIEQIREQYKDESLSITLTGHSLGASLAILSAFDLVENGVDNIPVSAIVFGSPQVGNKAFNDRVLDFANLKVLHVRNKIDLIPLYPSGLLGYRNTGIELVVDGRKSPSLKDSKSPGDWHNLQAILHVVAGWNGDDGEFELKVKRSLALVNKSSAILKDEYLIPGSWWIEKNKGLVLDEDGEWVLAPPSDEDQPVPEF 418
Match: A0A6P6SGI6 (Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (3.1.1.- {ECO:0000256|RuleBase:RU367093}))
HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0
Identity = 284/399 (71.18%), Postives = 332/399 (83.21%), Query Frame = 0
Query: 1 MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYGKKDFFQKVMLTNASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNWIGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLLSQK--NQELSGGNASSSSDEDDDLPKVMQGWLTIYNSDDPNSQFTKLSARAQLMSKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGVT-VPISAFIFGSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELLIDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVNKSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPE 396
+GS +W+GLL+PLDLSLR LILRCGDFCQATYD+F ND NSK+ GSSRYGKK FFQKVML NAS YQV CFLYATA++ +A LL SRSREAWDRESNWIGYIATTTDE S +LGRREIYVAWRGT+RDYEWI+VF +P SA L K ++++ S DE++ KVM GWLTIY S+DP S FTK SAR QL+SK+ L+++Y+ E +SITF GHSLGA+LS++SAFDL ENGVT +P+SA +FGSPQVG+K FND++ EF N+KILH++NKIDLIPLYPS LLGYVNTG L I+TRKSP+LKD+K+P DWHNLQ +LH+V+GWNG KGEFELKVKRSLALVNKSSA LKEEYL P +WWVEKNKGM IDENG+W APPADEDLPVPE
Sbjct: 15 LGSNNWEGLLDPLDLSLRKLILRCGDFCQATYDSFVNDANSKFAGSSRYGKKTFFQKVMLENASDYQVYCFLYATAQIGVPEAILLHSRSREAWDRESNWIGYIATTTDEVSKSLGRREIYVAWRGTSRDYEWIDVFSARPESADQLFKPKSWDKKVEANEDDSDEDEEEKATKVMYGWLTIYVSEDPKSSFTKTSARKQLLSKMKTLIEQYKDEKLSITFTGHSLGAALSILSAFDLVENGVTDIPVSAIVFGSPQVGNKAFNDRVLEFPNLKILHVKNKIDLIPLYPSGLLGYVNTGTLLEINTRKSPHLKDSKNPSDWHNLQAILHVVNGWNGSKGEFELKVKRSLALVNKSSAFLKEEYLAPETWWVEKNKGMVIDENGDWILAPPADEDLPVPE 413
Match: A0A6P6S7B9 (Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (3.1.1.- {ECO:0000256|RuleBase:RU367093}))
HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 283/399 (70.93%), Postives = 332/399 (83.21%), Query Frame = 0
Query: 1 MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYGKKDFFQKVMLTNASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNWIGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLLSQK--NQELSGGNASSSSDEDDDLPKVMQGWLTIYNSDDPNSQFTKLSARAQLMSKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGVT-VPISAFIFGSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELLIDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVNKSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPE 396
+GS +W+GLL+PLDLSLR LILRCGDFCQATYD+F ND NSK+ GSSRYGKK FFQKVML NAS YQV CFLYATA++ +A LL SRSREAWDRESNWIGYIATTTDE S +LGRREIYVAWRGT+RDYEWI+VF +P SA L K ++++ S DE++ KVM GWLTIY S+DP S FTK SAR QL+SK+ L+++Y+ E +SITF GHSLGA+LS++SAFDL ENGVT +P+SA +FGSPQVG+K FND++ EF N+KILH++NKIDLIPLYPS LLGYVNTG L IDTRKSP+LKD+K+P DWHNLQ +LH+V+GWNG KGEFELKVKRSLALVNKSSA LKE+YL+P +WWVEKNKGM IDENG+W AP ADEDLPVPE
Sbjct: 15 LGSNNWEGLLDPLDLSLRKLILRCGDFCQATYDSFVNDANSKFAGSSRYGKKSFFQKVMLENASDYQVYCFLYATAQIGVPEAILLHSRSREAWDRESNWIGYIATTTDEVSKSLGRREIYVAWRGTSRDYEWIDVFSARPESADQLFKPKSWDKKVEANEDDSDEDEEEKATKVMYGWLTIYVSEDPKSSFTKTSARKQLLSKMKTLIEQYKDEKLSITFTGHSLGAALSILSAFDLVENGVTDIPVSAIVFGSPQVGNKAFNDRVLEFPNLKILHVKNKIDLIPLYPSGLLGYVNTGTLLEIDTRKSPHLKDSKNPSDWHNLQAILHVVNGWNGSKGEFELKVKRSLALVNKSSAFLKEDYLVPETWWVEKNKGMVIDENGDWILAPLADEDLPVPE 413
Match: A0A2U1L6G7 (Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (3.1.1.- {ECO:0000256|RuleBase:RU367093}))
HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 287/440 (65.23%), Postives = 331/440 (75.23%), Query Frame = 0
Query: 1 MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYGKKDFFQKVMLT-NASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNWIGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLLSQKNQELSGGNASS--------SSDEDDDLP----------------------------------KVMQGWLTIYNSDDPNSQFTKLSARAQLMSKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGVTVPISAFIFGSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELLIDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVNKSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPEF 397
+GS +W+GLL+P D++LR LILRCGDFCQATYDAFNNDENSKY GSSRYGKK FF KVML + Y++A F+YATA+VS +AFL +S SREAWDRESNWIGYIA T+D+ S LGRREIYV WRGT+RD+EWINVF K ASA PLL + LS + SSDEDD +P KVMQGWLTIY SDDPNS FTK SAR Q+++ I QL+ KYE E+VSI GHSLGASLS++SAFDLAENG+TVPISAF+FGSPQVG+K FND+L EF NVK+LHIRNKIDLIPLYPS LLGYVNTGV+ LIDTRKSP+LKD+ + GDWHNLQ MLH+V GWNG GEFEL+VKRSL LVNKSS LK+EYLIPGSWW+EKNKG+ +D NGEW PP +ED+PVPEF
Sbjct: 17 LGSNNWEGLLDPFDINLRTLILRCGDFCQATYDAFNNDENSKYAGSSRYGKKSFFHKVMLQPSPDDYEIAAFIYATARVSVPEAFLFKSLSREAWDRESNWIGYIAVTSDKVSKKLGRREIYVVWRGTSRDFEWINVFGAKSASAEPLLRARTLSLSTTGTGNGTTTTLTDSSDEDDTIPFIDSLALRIDGISWLRWLVPLITYFAKAKDGPTPKVMQGWLTIYTSDDPNSSFTKTSARTQVLTTIRQLVSKYENEDVSIIQTGHSLGASLSILSAFDLAENGITVPISAFVFGSPQVGNKAFNDRLSEFTNVKVLHIRNKIDLIPLYPSGLLGYVNTGVDFLIDTRKSPSLKDSNNTGDWHNLQGMLHVVAGWNGADGEFELRVKRSLTLVNKSSEFLKDEYLIPGSWWIEKNKGVILDANGEWVLEPPDEEDIPVPEF 456
Match: M1BTN2 (Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (3.1.1.- {ECO:0000256|RuleBase:RU367093}))
HSP 1 Score: 582.022 bits (1499), Expect = 0.000e+0
Identity = 271/400 (67.75%), Postives = 328/400 (82.00%), Query Frame = 0
Query: 1 MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYGKKDFFQKVMLTNASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNWIGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLL---SQKNQELSGGNASSSSDEDDDLPKVMQGWLTIYNSDDPNSQFTKLSARAQLMSKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGVT-VPISAFIFGSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELLIDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVNKSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPE 396
+GS +W+GLL PL L+LR LILRCGDFCQAT+DAFNNDE S YCGSSRYGK FF KVM +AS YQ+ FLYATA+V + +AF L S SRE+WDRESNWIGYIA T DE S LGRREIY+A+RGTTR+YEW+NV P SA PLL S + G N S+S++D++ P+VM GWL IY S DP S +T+LSARAQL + I L +Y+ EN+SITF GHSLGA+LS+++AFDL ENGVT +P+SA IFGSPQVG++ FNDKLKEF N+KILH++NKID+IPLYPS LLGYVN+G+EL+IDTRKSP+LKD+K+P DWHNLQ MLHI+ GWNG+ GEFE+KVKRSLALVNKSS+ILK++ LIPGSWWVEKNKG+ +DE+GEW APP DED+P+PE
Sbjct: 11 LGSNNWEGLLEPLHLNLRRLILRCGDFCQATHDAFNNDEYSMYCGSSRYGKSSFFHKVMFKSASDYQIVSFLYATARVGAHKAFFLHSLSRESWDRESNWIGYIAVTNDEMSEQLGRREIYIAFRGTTRNYEWVNVLSALPESAEPLLHPQSLNKPDPDGDNGGSNSNDDENAPRVMNGWLKIYISSDPKSPYTRLSARAQLQTMIEDLRDRYKDENLSITFTGHSLGATLSILAAFDLVENGVTDIPVSAIIFGSPQVGNRAFNDKLKEFPNLKILHVKNKIDVIPLYPSSLLGYVNSGIELVIDTRKSPSLKDSKNPSDWHNLQAMLHIIAGWNGENGEFEMKVKRSLALVNKSSSILKDDILIPGSWWVEKNKGVVLDEDGEWILAPPLDEDIPIPE 410
Match: A0A5B7BTY5 (Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (3.1.1.- {ECO:0000256|RuleBase:RU367093}))
HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0
Identity = 280/403 (69.48%), Postives = 333/403 (82.63%), Query Frame = 0
Query: 1 MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYGKKDFFQKVMLTNASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNWIGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLLS-----QKNQELSGGNASSSSDEDDDLPKVMQGWLTIYNSDDPNSQFTKLSARAQLMSKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGVT-VPISAFIFGSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELLIDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVNKSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPEF 397
+GS +W+GLL PLDL+LR LILRCGDFCQATYDAFNND+NSKYCGSSRYGK FF KVML +AS YQ+ FLYATA+VS +AFLL S SRE+WDRESNWIGYIA TTDE S ALGRREIYVAWRGTTR+YEWI++ K SA PLL Q ++ S +AS S ++++ +PKVM GW+T+Y S DP S FTK SAR QL++KI +LL +Y+ E +SITF GHSLGASLSV++AFD+ ENGV+ +P+SAF+FG PQVG++ F++KLK+F N+KILHIRN+IDLIP YPS LLGYVN+G+EL+IDTRKSP+LKD+K+P DWHNLQ MLH+VDGWNG GEFELKV RSLALVNKSS LK+E LIPGSWWVEKN+GM DE G W APPADEDLPVPE+
Sbjct: 15 LGSNNWEGLLEPLDLNLRRLILRCGDFCQATYDAFNNDQNSKYCGSSRYGKNSFFHKVMLDSASHYQLTSFLYATARVSVHEAFLLHSLSRESWDRESNWIGYIAVTTDEVSQALGRREIYVAWRGTTRNYEWIDILGAKLESAEPLLRPKTLRQSEEKNSSSSASDSDEDNEKVPKVMLGWITVYTSVDPKSPFTKASARTQLLTKINELLNQYKDEKLSITFTGHSLGASLSVLAAFDIVENGVSDIPVSAFVFGLPQVGNRAFDEKLKQFPNLKILHIRNEIDLIPHYPSHLLGYVNSGIELVIDTRKSPSLKDSKNPSDWHNLQGMLHVVDGWNGAHGEFELKVGRSLALVNKSSEFLKDECLIPGSWWVEKNRGMVRDEQGNWVLAPPADEDLPVPEY 417
Match: A0A2G9HZF5 (Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (3.1.1.- {ECO:0000256|RuleBase:RU367093}))
HSP 1 Score: 576.244 bits (1484), Expect = 0.000e+0
Identity = 275/402 (68.41%), Postives = 331/402 (82.34%), Query Frame = 0
Query: 1 MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYGKKDFFQKVMLTNASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNWIGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLLSQKNQELSGGN----ASSSSDEDDDLPKVMQGWLTIYNSDDPNSQFTKLSARAQLMSKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGV-TVPISAFIFGSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELLIDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVNKSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPEF 397
+GSK+W GLLNPL+L+LR LILRCGDFCQATYDAFNND+NSKY GSSRYGKK FFQKV+L +A+ Y+V CFLYATAKV +A +L S+SRE+WDRESNWIGYIA TTDE S ALGRREIYV WRGTTR+YEWI+VF +P SA+ L+ +N E N +SS D+D+ +PKVM GWLTIY S+DPNS FTKLSAR QL KI +L + Y EN+SIT GHSLGA L+++SAFDL ENGV +P++A +FGSPQVG++ F +++ +F+N+KILHI+NKIDLIP YPS LLGY + G EL+ID RKSP+LK + +P DWHNL+ MLH+V GWNGD+GEFELKVKRSLALVNKSS +LK+EYLIPGSWW+EKNKGM +DENGEW APP+DED PVPEF
Sbjct: 19 LGSKNWDGLLNPLNLTLRRLILRCGDFCQATYDAFNNDQNSKYAGSSRYGKKSFFQKVILESAADYEVYCFLYATAKVGIAEALVLHSQSRESWDRESNWIGYIAVTTDEVSRALGRREIYVVWRGTTRNYEWIDVFGARPESAQRLVRPRNWERKTENSDSSSSSDEDDDEKVPKVMNGWLTIYVSEDPNSPFTKLSARTQLQRKILELREIYNNENLSITVTGHSLGACLAILSAFDLVENGVDDIPVAAIVFGSPQVGNRTFRERVLQFSNLKILHIKNKIDLIPHYPSALLGYRSLGTELVIDNRKSPSLKHSHNPSDWHNLEAMLHVVAGWNGDEGEFELKVKRSLALVNKSSEVLKDEYLIPGSWWIEKNKGMVVDENGEWILAPPSDEDQPVPEF 420
Match: A0A6I9TDH6 (Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (3.1.1.- {ECO:0000256|RuleBase:RU367093}))
HSP 1 Score: 574.704 bits (1480), Expect = 0.000e+0
Identity = 281/398 (70.60%), Postives = 321/398 (80.65%), Query Frame = 0
Query: 1 MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYGKKDFFQKVMLTNASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNWIGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLLSQKNQELSGGNASSSSDEDDDLPKVMQGWLTIYNSDDPNSQFTKLSARAQLMSKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGV-TVPISAFIFGSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELLIDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVNKSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPEF 397
+GSK+W+GLL+PLDLSLR LILRCGDFCQATYDAFNNDENSKY GSSRYGKK FF KVML +AS YQV CFLYATAKV +A L SRSREAWDRESNWIGYI+TTTDE S ALGRREIYVAWRGTTRDYEWI+VF KP SA+ LL GG +E +PKVM GWL +Y S DPNS FTK SAR QL KI +LLK YE E++SIT GHSLG L+ +SAFDL ENGV +P+SA +FGSPQVGDK FN++++++ N+K+LH+RN+IDLIPLYPS LGY NTG++L ID RKSP+LKD+K+P DWHNLQ MLH+V GWNG EFELKVKRSLALVNKSS+ILK+EYLIPGSWWVEKNKG+ DENGEW + P DED PVPEF
Sbjct: 14 LGSKNWEGLLDPLDLSLRRLILRCGDFCQATYDAFNNDENSKYAGSSRYGKKSFFSKVMLESASDYQVQCFLYATAKVGIIEAIFLHSRSREAWDRESNWIGYISTTTDEVSRALGRREIYVAWRGTTRDYEWIDVFGAKPDSAKELLQ------PGGEDDDEDEE--KVPKVMDGWLKLYVSSDPNSPFTKFSARNQLQKKIKELLKLYENESLSITLTGHSLGGCLATLSAFDLVENGVNNIPVSAIVFGSPQVGDKVFNERMRQYPNLKVLHVRNRIDLIPLYPSEFLGYKNTGIQLEIDNRKSPSLKDSKNPSDWHNLQAMLHVVAGWNGPHEEFELKVKRSLALVNKSSSILKDEYLIPGSWWVEKNKGLVRDENGEWTW-PAPDEDQPVPEF 402
Match: A0A5N6MX34 (Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (3.1.1.- {ECO:0000256|RuleBase:RU367093}))
HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0
Identity = 276/402 (68.66%), Postives = 324/402 (80.60%), Query Frame = 0
Query: 1 MGSKDWQGLLNPLDLSLRHLILRCGDFCQATYDAFNNDENSKYCGSSRYGKKDFFQKVML-TNASQYQVACFLYATAKVSSGQAFLLRSRSREAWDRESNWIGYIATTTDEASAALGRREIYVAWRGTTRDYEWINVFDPKPASARPLLSQKNQELSGGNASSS---SDEDDDLPKVMQGWLTIYNSDDPNSQFTKLSARAQLMSKITQLLKKYEGENVSITFAGHSLGASLSVVSAFDLAENGVT-VPISAFIFGSPQVGDKRFNDKLKEFANVKILHIRNKIDLIPLYPSILLGYVNTGVELLIDTRKSPNLKDTKSPGDWHNLQTMLHIVDGWNGDKGEFELKVKRSLALVNKSSAILKEEYLIPGSWWVEKNKGMTIDENGEWGFAPPADEDLPVPEF 397
+G+ +W+GLL PLD+ LR LILRCGDFCQATYDAFNND+NSKY GSSRYGKK FF KVML + S Y+V F+YATAK+S +AF L S SREAWDRESNW+GYIATTTDE S LGRREIYVAWRGT+RD EWINV ASA PLL QK S + +S+ SDED+ +PKVMQGWL IY SD+PNS FTKLSAR Q++ I QL+KKYE E++SI GHSLGASLS++SAFDLAENG+T +P+SAF+FGSPQVG++ FND+L +F NVKILHIRNKIDLI YPS LLGYV++G+ IDTRKS +LK + + DWHNLQ MLH+V GWNGD GEFELKV RSLALVNKSS LK+EYLIPGSWWVEKNKG+ +ENG+W PP +ED+PVPE+
Sbjct: 15 LGANNWEGLLEPLDIKLRTLILRCGDFCQATYDAFNNDKNSKYAGSSRYGKKSFFHKVMLHPSPSDYEVCMFIYATAKISIAEAFFLHSLSREAWDRESNWVGYIATTTDEVSQNLGRREIYVAWRGTSRDLEWINVLGAISASAEPLLRQKTFSPSTADPTSNDSDSDEDEGIPKVMQGWLKIYTSDNPNSSFTKLSARTQVLKGIQQLVKKYENEDISIIITGHSLGASLSILSAFDLAENGITNIPVSAFVFGSPQVGNQAFNDRLNQFPNVKILHIRNKIDLITRYPSRLLGYVDSGINFEIDTRKSGSLKKSNNTADWHNLQGMLHVVAGWNGDNGEFELKVPRSLALVNKSSEFLKDEYLIPGSWWVEKNKGLIKNENGDWVLEPPDEEDIPVPEY 416
| Match Name | Stats | Description |
|---|---|---|
| A0A068V7Q5 | E-Value: 0.000e+0, PID: 71.18 | Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (... [more] |
| A0A022RL19 | E-Value: 0.000e+0, PID: 70.00 | Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (... [more] |
| A0A6P6SGI6 | E-Value: 0.000e+0, PID: 71.18 | Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (... [more] |
| A0A6P6S7B9 | E-Value: 0.000e+0, PID: 70.93 | Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (... [more] |
| A0A2U1L6G7 | E-Value: 0.000e+0, PID: 65.23 | Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (... [more] |
| M1BTN2 | E-Value: 0.000e+0, PID: 67.75 | Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (... [more] |
| A0A5B7BTY5 | E-Value: 0.000e+0, PID: 69.48 | Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (... [more] |
| A0A2G9HZF5 | E-Value: 0.000e+0, PID: 68.41 | Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (... [more] |
| A0A6I9TDH6 | E-Value: 0.000e+0, PID: 70.60 | Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (... [more] |
| A0A5N6MX34 | E-Value: 0.000e+0, PID: 68.66 | Phospholipase A1 {ECO:0000256|RuleBase:RU367093} (... [more] |
Pages
back to top| Name | Description |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |