Resource Type:
Polypeptide
Name:
DCAR_016115
Identifier:
DCAR_016115.mRNA-protein
Sequence:
MGSSSHVLDRSSPFTTPSSKILGLNKNLLFYPRTNKRFCVSCLEKGDSQI
KKNGRTSPISAISDKMGRIVPEKPVKFKVRAVVTVRNKNKEDFRETIVKQ
LDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERV
NYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSW
VQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLS
DRIYDYDVYNDLGNPDRGIEFVRPTLGGNKRPFPRRCRTGRLPTDTDMHA
ESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNN
HNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLK
YDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIY
GPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLD
GRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSN
WMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYK
LLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKSWRF
DLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVR
TYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLT
SILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNF
LADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGD
AEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEP
GVTCRGVPNSVSI*
Sequence Length:
914
Sequence Checksum:
f752c5a633a4c9279b38001c23266693
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_016115, derives from mRNA, DCAR_016115. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5B9V3 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1784.23 bits (4620), Expect = 0.000e+0
Identity = 842/913 (92.22%), Postives = 889/913 (97.37%), Query Frame = 0
Match: A0A6L5B9V3 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1784.23 bits (4620), Expect = 0.000e+0
Identity = 842/913 (92.22%), Postives = 889/913 (97.37%), Query Frame = 0
Query: 1 MGSSSHVLDRSSPFTTPSSKILGLNKNLLFYPRTNKRFCVSCLEKGDSQIKKNGRTSPISAISDKMGRIVPEKPVKFKVRAVVTVRNKNKEDFRETIVKQLDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLSDRIYDYDVYNDLGNPDRGIEFVRPTLGGNKRPFPRRCRTGRLPTDTDMHAESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNNHNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIYGPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLDGRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYKLLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKSWRFDLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVRTYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLTSILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNFLADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
MGSS HVLDRSSPF T SSKILGLNKNLLFYP KRF V+C+EKGDSQ KK RTSPISAISDK+GRIVPEK VKFKVRAVVTV+NKNKEDF+ETIVKQLDAF++KIGRNVVLEL+SSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMES+VVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKEL DL+GDGKG+RKLSDR+YDYDVYNDLGNPD+GIEFVRPTLGG+KRPFPRRCRTGR PT+TD+HAESRVEKPLP+YVPRDEQFEE KQNTFSASRLKAVLHNL+PS+MASISSNNHNFKGFGHIDSLYSEGLLLKLGL DDLLQKLP+ YVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPV+IE+L+VFPPVGNLD +I+GPQ+SALKEEHIAGNLNGMT+QQAL+ NKLFI+DYHDIYLPFLDRIN LDGRKAYATRTIFFLTS+GTLKPIAIEL+LP+NGPDSQSKRV+TPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSA+HPIYKLLEPHMRYTLVIN IARQTLISADGVIESCFTPGRYCMEISASAYK+WRFDLEGLP+DLIRRGMA PDPTKPHGL+LLIEDYPYAADGLLIWDAIE+WV TYV+RYYTESSIICND+ELQAWY ESINVGHADLRHESWWPKL+TPEDLTS+LTTL+WLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDE+DPEYV+FLADPQKYFFSSISSLLQSTKYMAVVD LSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIE+RNSNP+LRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI
Sbjct: 8 MGSSCHVLDRSSPFITSSSKILGLNKNLLFYPTNGKRFFVNCVEKGDSQSKKVVRTSPISAISDKIGRIVPEKAVKFKVRAVVTVKNKNKEDFKETIVKQLDAFTDKIGRNVVLELVSSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESVVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELSDLRGDGKGIRKLSDRVYDYDVYNDLGNPDKGIEFVRPTLGGSKRPFPRRCRTGRRPTETDLHAESRVEKPLPVYVPRDEQFEECKQNTFSASRLKAVLHNLLPSLMASISSNNHNFKGFGHIDSLYSEGLLLKLGLHDDLLQKLPLQYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVTIEKLEVFPPVGNLDHKIFGPQESALKEEHIAGNLNGMTLQQALKENKLFIVDYHDIYLPFLDRINALDGRKAYATRTIFFLTSIGTLKPIAIELSLPANGPDSQSKRVITPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAIHPIYKLLEPHMRYTLVINAIARQTLISADGVIESCFTPGRYCMEISASAYKNWRFDLEGLPADLIRRGMAEPDPTKPHGLKLLIEDYPYAADGLLIWDAIESWVSTYVKRYYTESSIICNDKELQAWYTESINVGHADLRHESWWPKLATPEDLTSVLTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDEKDPEYVSFLADPQKYFFSSISSLLQSTKYMAVVDTLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIEQRNSNPKLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 920
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YYS6 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1523.84 bits (3944), Expect = 0.000e+0
Identity = 702/859 (81.72%), Postives = 791/859 (92.08%), Query Frame = 0
Match: A0A5B6YYS6 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1523.84 bits (3944), Expect = 0.000e+0
Identity = 702/859 (81.72%), Postives = 791/859 (92.08%), Query Frame = 0
Query: 56 TSPISAISDKMGRIVPEKPVKFKVRAVVTVRNKNKEDFRETIVKQLDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLSDRIYDYDVYNDLGNPDRGIEFVRPTLGGNKRPFPRRCRTGRLPTDTDMHAESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNNHNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIYGPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLDGRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYKLLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKS-WRFDLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVRTYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLTSILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNFLADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
T P++A+S+ + + VPEK VKFKVRAVVTVRNK+KED +ETIVK+LDAF++KIGRNVVLEL+S++ DP+T PKKS EAVL+DW+KK NVKAERVNY AEF+VDSNFG PGAI V NKHQKEFF+E+I +EGF CGPVHFPC+SWVQS DHPGKR+FFSNQPYLPS+TP GLKALREKEL++L+GDGKGVRKLSDRIYD+D+YNDLGNPDRGI+F RPTLGG K P+PRRCRTGRLPTDTDMHAESRVEKPLP+YVPRDEQFEESKQ+TFSA RLKAVLHNL+PS+MASIS+NNH+ KGF HIDSLYSEG+LLKLGLQD+LL+KLP+P VS+IQE+SQG LLKYDTPKI+SKDKFAW+RDDEFARQA+AG+NPV+I+RL+VFPPV NLDPEIYG Q+SALKEEHI G LNGMTVQQALE NKLFI+D+HD+Y+PFLDRIN LDGRKAYATRTIF+LT +GTLKPIAIEL+LP GP+S SKRVVTP VDAT+NWMWQLAKAHVCSNDAGVHQL NHWLRTHACMEPFIL+AHRQLSAMHPI+KLL+PHMRYTL IN +ARQ LI+ADGVIESCFTPGRYCME+SA+AYK+ WRFDLEGLP+DLIRRGMAVPDPT+PHGL+LL+EDYPYAADGLLIW AIE WVRTYV+ Y +SS+ICNDRELQAWYAESINVGHADLRH +WWP L+T +DL SILTT++WLASAQHAALNFGQYPYGGYVPNRPPLMRRLIP+E D EY FLADPQKYF S++ LLQ+TK+MAVVD LSTHS DEEYIGER PSTWSGDAE+V AFY FSAEIGRIEKEIE+RN NP+LRNRCGAGVLPYELLAP+SEPGVTCRGVPNSVSI
Sbjct: 58 TGPVAAVSENLVKAVPEKAVKFKVRAVVTVRNKHKEDLKETIVKKLDAFTDKIGRNVVLELVSTEIDPKTKAPKKSNEAVLKDWAKKSNVKAERVNYIAEFIVDSNFGTPGAITVANKHQKEFFLETITIEGFVCGPVHFPCNSWVQSNNDHPGKRIFFSNQPYLPSQTPAGLKALREKELKNLRGDGKGVRKLSDRIYDFDIYNDLGNPDRGIDFARPTLGGEKIPYPRRCRTGRLPTDTDMHAESRVEKPLPMYVPRDEQFEESKQDTFSAGRLKAVLHNLIPSLMASISANNHDIKGFSHIDSLYSEGVLLKLGLQDELLKKLPLPKAVSKIQETSQGGLLKYDTPKIVSKDKFAWVRDDEFARQAIAGVNPVNIQRLEVFPPVSNLDPEIYGSQESALKEEHIVGQLNGMTVQQALEENKLFIVDHHDVYIPFLDRINALDGRKAYATRTIFYLTPLGTLKPIAIELSLPPAGPNSLSKRVVTPAVDATTNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINVLARQGLINADGVIESCFTPGRYCMEMSAAAYKNFWRFDLEGLPADLIRRGMAVPDPTQPHGLKLLLEDYPYAADGLLIWSAIEKWVRTYVKHCYPDSSLICNDRELQAWYAESINVGHADLRHATWWPTLATADDLISILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEENDVEYAVFLADPQKYFLSALPGLLQATKFMAVVDTLSTHSPDEEYIGERQHPSTWSGDAEVVEAFYEFSAEIGRIEKEIEKRNGNPKLRNRCGAGVLPYELLAPTSEPGVTCRGVPNSVSI 916
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2ZVP6 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1497.26 bits (3875), Expect = 0.000e+0
Identity = 697/866 (80.48%), Postives = 782/866 (90.30%), Query Frame = 0
Match: A0A2G2ZVP6 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1497.26 bits (3875), Expect = 0.000e+0
Identity = 697/866 (80.48%), Postives = 782/866 (90.30%), Query Frame = 0
Query: 49 QIKKNGRTSPISAISDKMGRIVPEKPVKFKVRAVVTVRNKNKEDFRETIVKQLDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLSDRIYDYDVYNDLGNPDRGIEFVRPTLGGNKR-PFPRRCRTGRLPTDTDMHAESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNNHNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIYGPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLDGRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYKLLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKSWRFDLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVRTYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLTSILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNFLADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
+ +K R ++AIS+ + ++VPEK VKFKVRAVVTVRNKNKED +ETIVK LDAF++KIGRNV LELIS+D DP T PK+S +AVL+DWSKK N+K ERVNYTAEF+VDSNFG PGAI VTNKHQ+EFF+ESI +EGFACGPVHFPC+SWVQ KKDHPGKR+FFSNQPYLP+E P GLK+LREKELRD++GDG GVRKLSDRIYDYD+YNDLGNPD+GI+F RP LGGN +PRRCRTGR+P DTDM AESRVEKP P YVPRDEQFEESK TFS SRLKAVLHNL+PS+MASISSNNH+FKGF IDSLYSEGLLLKLGLQD++L KLP+P VVS I+E G+LLKYDTPKI+SKDKFAWLRDDEFARQA+AG+NPV+IERL+VFPPV LDPEIYGPQ+SALKEEHI G+LNGMTVQ+AL+ NKLFI+DYHD+YLPFLDRIN LDGRKAYATRTIFFL+S+GTLKPIAIEL+LP GP S+SKRVVTPPVDAT NWMWQLAKAHVCSNDAGVHQL NHWLRTHAC+EPFIL+AHRQLSAMHPIYKLL+PHMRYTL ING+ARQ+LI+ADGVIE+CFTPGRYCMEISA+AYK+WRFDLEGLP+DLIRRGMAVPD T+PHGL+LLIEDYPYAADGL+IW AIE W+R YV YY +S+ +CNDRELQAWY ESINVGHADLR+E WWP L+TPEDL SILTTL+WLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDE DPEY FLADPQKYFFS++ SLLQ+TK+MAVVD LSTHS DEEY+GER QPSTW+GDAE+V AFY FSAE+ RIEKEI+ +N N +LRNRCGAGVLPYELLAPSS PGVTCRGVPNSVSI
Sbjct: 47 RTRKAFRQCTMAAISENLIKVVPEKAVKFKVRAVVTVRNKNKEDLKETIVKHLDAFTDKIGRNVALELISTDIDPNTKGPKRSNQAVLKDWSKKSNLKTERVNYTAEFIVDSNFGTPGAITVTNKHQQEFFLESITIEGFACGPVHFPCNSWVQPKKDHPGKRIFFSNQPYLPNEMPAGLKSLREKELRDIRGDGTGVRKLSDRIYDYDIYNDLGNPDKGIDFARPKLGGNGNIAYPRRCRTGRVPMDTDMSAESRVEKPNPTYVPRDEQFEESKMTTFSTSRLKAVLHNLIPSLMASISSNNHDFKGFSDIDSLYSEGLLLKLGLQDEVLNKLPLPKVVSSIKE---GDLLKYDTPKILSKDKFAWLRDDEFARQAIAGVNPVTIERLQVFPPVSKLDPEIYGPQESALKEEHIRGHLNGMTVQEALDANKLFIVDYHDVYLPFLDRINALDGRKAYATRTIFFLSSLGTLKPIAIELSLPQTGPSSRSKRVVTPPVDATGNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINGLARQSLINADGVIEACFTPGRYCMEISAAAYKNWRFDLEGLPADLIRRGMAVPDSTQPHGLKLLIEDYPYAADGLMIWAAIEGWIRDYVNHYYQDSAQVCNDRELQAWYTESINVGHADLRNEDWWPTLATPEDLISILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDENDPEYAVFLADPQKYFFSALPSLLQATKFMAVVDTLSTHSPDEEYLGERHQPSTWTGDAEIVEAFYEFSAEMRRIEKEIDEKNVNTKLRNRCGAGVLPYELLAPSSGPGVTCRGVPNSVSI 909
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YZ35 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1497.26 bits (3875), Expect = 0.000e+0
Identity = 692/840 (82.38%), Postives = 776/840 (92.38%), Query Frame = 0
Match: A0A5B6YZ35 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1497.26 bits (3875), Expect = 0.000e+0
Identity = 692/840 (82.38%), Postives = 776/840 (92.38%), Query Frame = 0
Query: 75 VKFKVRAVVTVRNKNKEDFRETIVKQLDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLSDRIYDYDVYNDLGNPDRGIEFVRPTLGGNKRPFPRRCRTGRLPTDTDMHAESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNNHNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIYGPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLDGRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYKLLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKS-WRFDLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVRTYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLTSILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNFLADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
+KFKVRAVV VRNK+KED +ETIVK+LDAF++KIGRNVVLEL+S++ DP+T PKKS EAVL+DW+KK NVKAERVNY AEF+VDSNFG PGAI V NKHQKEFF+E+I +EGF CGPVHFPC+SWVQS DHPGKR+FFSNQPYLPS+TP GLKALREKEL++L+GDGKGVRKLSDRIYD+D+YNDLGNPDRGI+F RPTLGG K P+PRRCRTGRLPTDTDMHAESRVEKPLP+YVPRDEQFEESKQ+TFSA RLKAVLHNL+PS+MASIS+NNH+ KGF HIDSLYSEG+LLKLGLQD+LL+KLP+P VS+IQE+SQG LLKYDTPKI+SKDKFAW+RDDEFARQA+AG+NPV+I+RL+VFPPV NLDPEIYG Q+SALKEEHI G LNGMTVQQALE NKLFI+D+HD+Y+PFLDRIN LDGRKAYATRTIF+LT +GTLKPIAIEL+LP GP+S SKRVVTP VDAT+NWMWQLAKAHVCSNDAGVHQL NHWLRTHACMEPFIL+AHRQLSAMHPI+KLL+PHMRYTL IN +ARQ LI+ADGVIESCFTPGRYCME+SA+AYK+ WRFDLEGLP+DLIRRGMAVPDPT+PHGL+LL+EDYPYAADGLLIW AIE WVRTYV+ Y +SS+ICNDRELQAWYAESINVGHADLRH +WWP L+T +DL SILTT++WLASAQHAALNFGQYPYGGYVPNRPPLMRRLIP+E D EY FLADPQKYF S++ LLQ+TK+MAVVD LSTHS DEEYIGER PSTWSGDAE+V AFY FSAEIGRIEKEIE+RN NP+LRNRCGAGVLPYELLAP+SEPGVTCRGVPNSVSI
Sbjct: 1 MKFKVRAVVIVRNKHKEDLKETIVKKLDAFTDKIGRNVVLELVSTEIDPKTKAPKKSNEAVLKDWAKKSNVKAERVNYIAEFIVDSNFGTPGAITVANKHQKEFFLETITIEGFVCGPVHFPCNSWVQSNNDHPGKRIFFSNQPYLPSQTPAGLKALREKELKNLRGDGKGVRKLSDRIYDFDIYNDLGNPDRGIDFARPTLGGEKIPYPRRCRTGRLPTDTDMHAESRVEKPLPMYVPRDEQFEESKQDTFSAGRLKAVLHNLIPSLMASISANNHDIKGFSHIDSLYSEGVLLKLGLQDELLKKLPLPKAVSKIQETSQGGLLKYDTPKIVSKDKFAWVRDDEFARQAIAGVNPVNIQRLEVFPPVSNLDPEIYGSQESALKEEHIVGQLNGMTVQQALEENKLFIVDHHDVYIPFLDRINALDGRKAYATRTIFYLTPLGTLKPIAIELSLPPAGPNSLSKRVVTPAVDATTNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINVLARQGLINADGVIESCFTPGRYCMEMSAAAYKNFWRFDLEGLPADLIRRGMAVPDPTQPHGLKLLLEDYPYAADGLLIWSAIEKWVRTYVKHCYPDSSLICNDRELQAWYAESINVGHADLRHATWWPTLATADDLISILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEENDVEYAVFLADPQKYFLSALPGLLQATKFMAVVDTLSTHSPDEEYIGERQHPSTWSGDAEVVEAFYEFSAEIGRIEKEIEKRNGNPKLRNRCGAGVLPYELLAPTSEPGVTCRGVPNSVSI 840
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: K7QKT7 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1495.33 bits (3870), Expect = 0.000e+0
Identity = 696/866 (80.37%), Postives = 781/866 (90.18%), Query Frame = 0
Match: K7QKT7 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1495.33 bits (3870), Expect = 0.000e+0
Identity = 696/866 (80.37%), Postives = 781/866 (90.18%), Query Frame = 0
Query: 49 QIKKNGRTSPISAISDKMGRIVPEKPVKFKVRAVVTVRNKNKEDFRETIVKQLDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLSDRIYDYDVYNDLGNPDRGIEFVRPTLGGNKR-PFPRRCRTGRLPTDTDMHAESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNNHNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIYGPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLDGRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYKLLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKSWRFDLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVRTYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLTSILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNFLADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
+ +K R ++AIS+ + ++VPEK VKFKVRAVVTVRNKNKED +ETIVK LDAF++KIGRNV LELIS+D DP T PK+S +AVL+DWSKK N+K ERVNYTAEF+VDSNFG PGAI VTNKHQ+EFF+ESI +EGFACGPVHFPC+SWVQ KKDHPGKR+FFSNQPYLP+E P GL +LREKELRD++GDG GVRKLSDRIYDYD+YNDLGNPD+GI+F RP LGGN +PRRCRTGR+P DTDM AESRVEKP P YVPRDEQFEESK TFS SRLKAVLHNL+PS+MASISSNNH+FKGF IDSLYSEGLLLKLGLQD++L KLP+P VVS I+E G+LLKYDTPKI+SKDKFAWLRDDEFARQA+AG+NPV+IERL+VFPPV LDPEIYGPQ+SALKEEHI G+LNGMTVQ+AL+ NKLFI+DYHD+YLPFLDRIN LDGRKAYATRTIFFL+S+GTLKPIAIEL+LP GP S+SKRVVTPPVDAT NWMWQLAKAHVCSNDAGVHQL NHWLRTHAC+EPFIL+AHRQLSAMHPIYKLL+PHMRYTL ING+ARQ+LI+ADGVIE+CFTPGRYCMEISA+AYK+WRFDLEGLP+DLIRRGMAVPD T+PHGL+LLIEDYPYAADGL+IW AIE W+R YV YY +S+ +CNDRELQAWY ESINVGHADLR+E WWP L+TPEDL SILTTL+WLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDE DPEY FLADPQKYFFS++ SLLQ+TK+MAVVD LSTHS DEEY+GER QPSTW+GDAE+V AFY FSAE+ RIEKEI+ +N N +LRNRCGAGVLPYELLAPSS PGVTCRGVPNSVSI
Sbjct: 47 RTRKAFRQCTMAAISENLIKVVPEKAVKFKVRAVVTVRNKNKEDLKETIVKHLDAFTDKIGRNVALELISTDIDPNTKGPKRSNQAVLKDWSKKSNLKTERVNYTAEFIVDSNFGTPGAITVTNKHQQEFFLESITIEGFACGPVHFPCNSWVQPKKDHPGKRIFFSNQPYLPNEMPAGLXSLREKELRDIRGDGTGVRKLSDRIYDYDIYNDLGNPDKGIDFARPKLGGNGNIAYPRRCRTGRVPMDTDMSAESRVEKPNPTYVPRDEQFEESKMTTFSTSRLKAVLHNLIPSLMASISSNNHDFKGFSDIDSLYSEGLLLKLGLQDEVLNKLPLPKVVSSIKE---GDLLKYDTPKILSKDKFAWLRDDEFARQAIAGVNPVTIERLQVFPPVSKLDPEIYGPQESALKEEHIRGHLNGMTVQEALDANKLFIVDYHDVYLPFLDRINALDGRKAYATRTIFFLSSLGTLKPIAIELSLPQTGPSSRSKRVVTPPVDATGNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINGLARQSLINADGVIEACFTPGRYCMEISAAAYKNWRFDLEGLPADLIRRGMAVPDSTQPHGLKLLIEDYPYAADGLMIWAAIEGWIRDYVNHYYQDSAQVCNDRELQAWYTESINVGHADLRNEDWWPTLATPEDLISILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDENDPEYAVFLADPQKYFFSALPSLLQATKFMAVVDTLSTHSPDEEYLGERHQPSTWTGDAEIVEAFYEFSAEMRRIEKEIDEKNVNTKLRNRCGAGVLPYELLAPSSGPGVTCRGVPNSVSI 909
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8FUC8 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1495.33 bits (3870), Expect = 0.000e+0
Identity = 697/866 (80.48%), Postives = 781/866 (90.18%), Query Frame = 0
Match: A0A1U8FUC8 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1495.33 bits (3870), Expect = 0.000e+0
Identity = 697/866 (80.48%), Postives = 781/866 (90.18%), Query Frame = 0
Query: 49 QIKKNGRTSPISAISDKMGRIVPEKPVKFKVRAVVTVRNKNKEDFRETIVKQLDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLSDRIYDYDVYNDLGNPDRGIEFVRPTLGGNKR-PFPRRCRTGRLPTDTDMHAESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNNHNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIYGPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLDGRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYKLLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKSWRFDLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVRTYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLTSILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNFLADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
+ +K R ++AIS+ + ++VPEK VKFKVRAVVTVRNKNKED +ETIVK LDAF++KIGRNV LELIS D DP T PK+S +AVL+DWSKK N+K ERVNYTAEF+VDSNFG PGAI VTNKHQ+EFF+ESI +EGFACGPVHFPC+SWVQ KKDHPGKR+FFSNQPYLP+E P GLK+LREKELRD++GDG GVRKLSDRIYDYD+YNDLGNPD+GI+F RP LGGN +PRRCRTGR+P DTDM AESRVEKP P YVPRDEQFEESK TFS SRLKAVLHNL+PS+MASISSNNH+FKGF IDSLYSEGLLLKLGLQD++L KLP+P VVS I+E G+LLKYDTPKI+SKDKFAWLRDDEFARQA+AG+NPV+IERL+VFPPV LDPEIYGPQ+SALKEEHI G+LNGMTVQ+AL+ NKLFI+DYHD+YLPFLDRIN LDGRKAYATRTIFFL+S+GTLKPIAIEL+LP GP S+SKRVVTPPVDAT NWMWQLAKAHVCSNDAGVHQL NHWLRTHAC+EPFIL+AHRQLSAMHPIYKLL+PHMRYTL ING+ARQ+LI+ADGVIE+CFTPGRYCMEISA+AYK+WRFDLEGLP+DLIRRGMAVPD T+PHGL+LLIEDYPYAADGL+IW AIE W+R YV YY +S+ +CNDRELQAWY ESINVGHADLR+E WWP L+TPEDL SILTTL+WLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDE DPEY FLADPQKYFFS++ SLLQ+TK+MAVVD LSTHS DEEY+GER QPSTW+GDAE+V AFY FSAE+ RIEKEI+ +N N +LRNRCGAGVLPYELLAPSS PGVTCRGVPNSVSI
Sbjct: 48 RTRKAFRQCTMAAISENLIKVVPEKAVKFKVRAVVTVRNKNKEDLKETIVKHLDAFTDKIGRNVALELISIDIDPNTKGPKRSNQAVLKDWSKKSNLKTERVNYTAEFIVDSNFGTPGAITVTNKHQQEFFLESITIEGFACGPVHFPCNSWVQPKKDHPGKRIFFSNQPYLPNEMPAGLKSLREKELRDIRGDGTGVRKLSDRIYDYDIYNDLGNPDKGIDFARPKLGGNGNIAYPRRCRTGRVPMDTDMSAESRVEKPNPTYVPRDEQFEESKMTTFSTSRLKAVLHNLIPSLMASISSNNHDFKGFSDIDSLYSEGLLLKLGLQDEVLNKLPLPKVVSSIKE---GDLLKYDTPKILSKDKFAWLRDDEFARQAIAGVNPVTIERLQVFPPVSKLDPEIYGPQESALKEEHIRGHLNGMTVQEALDANKLFIVDYHDVYLPFLDRINALDGRKAYATRTIFFLSSLGTLKPIAIELSLPQTGPSSRSKRVVTPPVDATGNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINGLARQSLINADGVIEACFTPGRYCMEISAAAYKNWRFDLEGLPADLIRRGMAVPDSTQPHGLKLLIEDYPYAADGLMIWAAIEGWIRDYVNHYYQDSAQVCNDRELQAWYTESINVGHADLRNEDWWPTLATPEDLISILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDENDPEYAVFLADPQKYFFSALPSLLQATKFMAVVDTLSTHSPDEEYLGERHQPSTWTGDAEIVEAFYEFSAEMRRIEKEIDEKNVNTKLRNRCGAGVLPYELLAPSSGPGVTCRGVPNSVSI 910
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PV77 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1494.56 bits (3868), Expect = 0.000e+0
Identity = 700/914 (76.59%), Postives = 810/914 (88.62%), Query Frame = 0
Match: A0A2R6PV77 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1494.56 bits (3868), Expect = 0.000e+0
Identity = 700/914 (76.59%), Postives = 810/914 (88.62%), Query Frame = 0
Query: 1 MGSSSHVLDRSSPFTTPSSKILGLNKNLLFYPRTNKRFCVSCLEKGDSQIKKNGRTSPISAISDKMGRIVPEKPVKFKVRAVVTVRNKNKEDFRETIVKQLDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLSDRIYDYDVYNDLGNPDRGIEFVRPTLGGNKRPFPRRCRTGRLPTDTDMHAESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNNHNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIYGPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLDGRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYKLLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKS-WRFDLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVRTYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLTSILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNFLADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
MG S +++RS SSK+L ++ F + ++ + L+K +++K R P++AIS+ + R VPEK VKFKVR VVTVR KNKED +ETIVK LDA ++KIGRNVVLELIS++ DP+T PKKS +AVL+DWS+K N+K ERVNY AEF V+SNFG PGAI V+N+HQKEFFMESI +EGFACGPVHFPC+SWVQS KDHPGKR FFSNQPYLPSETP GL+ LREKEL+DL+GDG+GVRKLSDR+YD+D+YNDLGNPD+G+EF RP+LGG K P+PRRCRTGR+PTDTD+H+ESR+EKPLP+YVPRDEQFEESKQNTFSA RLK +LHNL+PS+MA+IS+NNH+FKGF IDSLYSEGLLLKLGLQD+LL+KLP+P VV +I +++QG+LLKY+TPKI+SKD+FAW+RDDEF RQA+AG+NPV+IERL VFPPV LDPEIYG Q+SALKEEHI G+LNGMTVQQAL+ NKL+I+DYHDIYLPFLDRIN LDGRK+YATRT+FFLTS+GTLKPIAIEL+LP NG S+SKRVVTPP DAT++WMWQLAK HVCSNDAGVHQL NHWLRTHA EPFIL+AHRQLSAMHPI+KLL+PHMRYTL +N +ARQ LI+ADGVIESCFTPGRYCME+SA+AYK+ WRFDLEGLP+DLIRRGMAVPDPT+PHGL+LL+EDYPYAADGLLIW AI+NWVRTYV RYY +S+ ICNDRELQAWYAESINVGHADLRHE WWP L+TP+DLTSILTT++WL SAQHAALNFGQYPYGGY+PNRPPLMRRLIP+E DPEY NFLADPQKYF SS+ SLLQ+TK+MAVVD LSTHS DEEYIGER QPS WSGDAE+V AFY FSAEI RIEKEIE+RN + LRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI
Sbjct: 8 MGCS--LIERS--LFNSSSKVLVSHR---FNYKQSQFWVNPVLKKNRVELRKI-RRGPVAAISEDLVRAVPEKAVKFKVRGVVTVRKKNKEDLKETIVKHLDALTDKIGRNVVLELISTEIDPKTKAPKKSNQAVLKDWSEKSNLKTERVNYIAEFTVESNFGVPGAITVSNRHQKEFFMESITIEGFACGPVHFPCNSWVQSTKDHPGKRTFFSNQPYLPSETPAGLRTLREKELKDLRGDGQGVRKLSDRVYDFDIYNDLGNPDKGMEFARPSLGGEKIPYPRRCRTGRIPTDTDLHSESRLEKPLPMYVPRDEQFEESKQNTFSAGRLKGLLHNLLPSLMANISANNHDFKGFSDIDSLYSEGLLLKLGLQDELLKKLPLPKVVDKITKTTQGDLLKYNTPKILSKDRFAWIRDDEFGRQAIAGVNPVNIERLTVFPPVSKLDPEIYGSQESALKEEHIVGHLNGMTVQQALDENKLYIVDYHDIYLPFLDRINALDGRKSYATRTVFFLTSLGTLKPIAIELSLPPNGHTSRSKRVVTPPADATTSWMWQLAKTHVCSNDAGVHQLVNHWLRTHASSEPFILAAHRQLSAMHPIFKLLDPHMRYTLEVNALARQNLINADGVIESCFTPGRYCMEMSAAAYKNFWRFDLEGLPADLIRRGMAVPDPTQPHGLKLLVEDYPYAADGLLIWSAIQNWVRTYVGRYYPDSAQICNDRELQAWYAESINVGHADLRHEDWWPTLATPDDLTSILTTIIWLTSAQHAALNFGQYPYGGYIPNRPPLMRRLIPEEGDPEYANFLADPQKYFLSSLPSLLQATKFMAVVDSLSTHSPDEEYIGERQQPSIWSGDAEVVEAFYGFSAEIRRIEKEIEKRNGDARLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3D0F1 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1494.17 bits (3867), Expect = 0.000e+0
Identity = 695/866 (80.25%), Postives = 782/866 (90.30%), Query Frame = 0
Match: A0A2G3D0F1 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1494.17 bits (3867), Expect = 0.000e+0
Identity = 695/866 (80.25%), Postives = 782/866 (90.30%), Query Frame = 0
Query: 49 QIKKNGRTSPISAISDKMGRIVPEKPVKFKVRAVVTVRNKNKEDFRETIVKQLDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLSDRIYDYDVYNDLGNPDRGIEFVRPTLGGNKR-PFPRRCRTGRLPTDTDMHAESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNNHNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIYGPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLDGRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYKLLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKSWRFDLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVRTYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLTSILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNFLADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
+ +K R ++AIS+ + ++VPEK VKFKVRAVVTVRNKNKED +ETIVK LDAF++KIGRNV LELIS+D DP T PK+S +AVL+DWSKK N+K ERVNYTAEF+VDSNFG PGAI VTNKHQ+EFF+ES+ +EGFACGPVHFPC+SWVQ KKDHPGKR+FFSNQPYLP+E P GLK+LREKELRD++GDG GVRKLSDRIYDYD+YNDLGNPD+GI+F RP LGGN +PRRCRTGR+P DTDM AESRVEKP P YVPRDEQFEESK TFS SRLKAVLHNL+PS+MASISSNNH+FKGF IDSLYSEGLLLKLGLQD++L KLP+P VVS I+E G+LLKYDTPKI+SKDKFAWLRDDEFARQA+AG+NPV+IERL+VFPPV LDPEIYGPQ+SALKEEHI G+LNGMTVQ+AL+ NKLFI+DYHD+YLPFLDRIN LDGRKAYATRTIFFL+++GTLKPIAIEL+LP GP S+SKRVVTPPVDAT NWMWQLAKAHVCSNDAGVHQL NHWLRTHAC+EPFIL+AHRQLSAMHPIYKLL+PHMRYTL ING+ARQ+LI+ADGVIE+CFTPGRYCMEISA+AYK+WRFDLEGLP+DLIRRGMAVPD T+PHGL+LLIEDYPYAADGL+IW AIE W+R YV YY +S+ +CNDRELQAWY ESINVGHADLR+E WWP L+TPEDL SILTTL+WLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDE DPEY FLADPQKYFFS++ SLLQ+TK+MAVVD LSTHS DEEY+GER QPSTW+GDAE+V AFY FSAE+ RIEKEI+ +N N +LRNRCGAGVLPYELLAPSS PGVTCRGVPNSVSI
Sbjct: 52 RTRKAFRQCTMAAISENLIKVVPEKAVKFKVRAVVTVRNKNKEDLKETIVKHLDAFTDKIGRNVALELISTDIDPNTKGPKRSNQAVLKDWSKKSNLKTERVNYTAEFIVDSNFGTPGAITVTNKHQQEFFLESMTIEGFACGPVHFPCNSWVQPKKDHPGKRIFFSNQPYLPNEMPAGLKSLREKELRDIRGDGTGVRKLSDRIYDYDIYNDLGNPDKGIDFARPKLGGNGNIAYPRRCRTGRVPMDTDMSAESRVEKPNPTYVPRDEQFEESKMTTFSTSRLKAVLHNLIPSLMASISSNNHDFKGFSDIDSLYSEGLLLKLGLQDEVLNKLPLPKVVSSIKE---GDLLKYDTPKILSKDKFAWLRDDEFARQAIAGVNPVTIERLQVFPPVSKLDPEIYGPQESALKEEHIRGHLNGMTVQEALDANKLFIVDYHDVYLPFLDRINALDGRKAYATRTIFFLSNLGTLKPIAIELSLPQTGPSSRSKRVVTPPVDATGNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINGLARQSLINADGVIEACFTPGRYCMEISAAAYKNWRFDLEGLPADLIRRGMAVPDSTQPHGLKLLIEDYPYAADGLMIWAAIEGWIRDYVNHYYQDSAQVCNDRELQAWYTESINVGHADLRNEDWWPTLATPEDLISILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDENDPEYAVFLADPQKYFFSALPSLLQATKFMAVVDTLSTHSPDEEYLGERHQPSTWTGDAEIVEAFYEFSAEMRRIEKEIDEKNVNTKLRNRCGAGVLPYELLAPSSGPGVTCRGVPNSVSI 914
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2WQ11 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1493.4 bits (3865), Expect = 0.000e+0
Identity = 696/866 (80.37%), Postives = 781/866 (90.18%), Query Frame = 0
Match: A0A2G2WQ11 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1493.4 bits (3865), Expect = 0.000e+0
Identity = 696/866 (80.37%), Postives = 781/866 (90.18%), Query Frame = 0
Query: 49 QIKKNGRTSPISAISDKMGRIVPEKPVKFKVRAVVTVRNKNKEDFRETIVKQLDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLSDRIYDYDVYNDLGNPDRGIEFVRPTLGGNKR-PFPRRCRTGRLPTDTDMHAESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNNHNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIYGPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLDGRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYKLLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKSWRFDLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVRTYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLTSILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNFLADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
+ +K R ++AIS+ + ++VPEK VKFKVRAVVTVRNKNKED +ETIVK LDAF++KIGRNV LELIS D DP T PK+S +AVL+DWSKK N+K ERVNYTAEF+VDSNFG PGAI VTNKHQ+EFF+ESI +EGFACGPVHFPC+SWVQ KKDHPGKR+FFSNQPYLP+E P GLK+LREKELRD++GDG GVRKLSDRIYDYD+YNDLGNPD+GI+F RP LGGN +PRRCRTGR+P DTDM AESRVEKP P YVPRDEQFEESK TFS SRLKAVLHNL+PS+MASISSNNH+FKGF IDSLYSEGLLLKLGLQD++L KLP+P VVS I+E G+LLKYDTPKI+SKDKFAWLRDDEFARQA+AG+NPV+IERL+VFPPV LDPEIYGPQ+SALKEEHI G+LNGMTVQ+AL+ NKLFI+DYHD+YLPFLDRIN LDGRKAYATRTIFFL+++GTLKPIAIEL+LP GP S+SKRVVTPPVDAT NWMWQLAKAHVCSNDAGVHQL NHWLRTHAC+EPFIL+AHRQLSAMHPIYKLL+PHMRYTL ING+ARQ+LI+ADGVIE+CFTPGRYCMEISA+AYK+WRFDLEGLP+DLIRRGMAVPD T+PHGL+LLIEDYPYAADGL+IW AIE W+R YV YY +S+ +CNDRELQAWY ESINVGHADLR+E WWP L+TPEDL SILTTL+WLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDE DPEY FLADPQKYFFS++ SLLQ+TK+MAVVD LSTHS DEEY+GER QPSTW+GDAE+V AFY FSAE+ RIEKEI+ +N N +LRNRCGAGVLPYELLAPSS PGVTCRGVPNSVSI
Sbjct: 52 RTRKAFRQCTMAAISENLIKVVPEKAVKFKVRAVVTVRNKNKEDLKETIVKHLDAFTDKIGRNVALELISIDIDPNTKGPKRSNQAVLKDWSKKSNLKTERVNYTAEFIVDSNFGTPGAITVTNKHQQEFFLESITIEGFACGPVHFPCNSWVQPKKDHPGKRIFFSNQPYLPNEMPAGLKSLREKELRDIRGDGTGVRKLSDRIYDYDIYNDLGNPDKGIDFARPKLGGNGNVAYPRRCRTGRVPMDTDMSAESRVEKPNPTYVPRDEQFEESKMTTFSTSRLKAVLHNLIPSLMASISSNNHDFKGFSDIDSLYSEGLLLKLGLQDEVLNKLPLPKVVSSIKE---GDLLKYDTPKILSKDKFAWLRDDEFARQAIAGVNPVTIERLQVFPPVSKLDPEIYGPQESALKEEHIRGHLNGMTVQEALDANKLFIVDYHDVYLPFLDRINALDGRKAYATRTIFFLSNLGTLKPIAIELSLPQTGPSSRSKRVVTPPVDATGNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINGLARQSLINADGVIEACFTPGRYCMEISAAAYKNWRFDLEGLPADLIRRGMAVPDSTQPHGLKLLIEDYPYAADGLMIWAAIEGWIRDYVNHYYQDSAQVCNDRELQAWYTESINVGHADLRNEDWWPTLATPEDLISILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDENDPEYAVFLADPQKYFFSALPSLLQATKFMAVVDTLSTHSPDEEYLGERHQPSTWTGDAEIVEAFYEFSAEMRRIEKEIDEKNVNTKLRNRCGAGVLPYELLAPSSGPGVTCRGVPNSVSI 914
BLAST of DCAR_016115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HWT1 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1486.47 bits (3847), Expect = 0.000e+0
Identity = 702/917 (76.55%), Postives = 805/917 (87.79%), Query Frame = 0
Match: A0A7J7HWT1 (Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13.11.- {ECO:0000256|RuleBase:RU003975}))
HSP 1 Score: 1486.47 bits (3847), Expect = 0.000e+0
Identity = 702/917 (76.55%), Postives = 805/917 (87.79%), Query Frame = 0
Query: 1 MGSSSHVLDRSSPFTTPSSKILG-LNKNLLFYPRTNKRFCVSCLEKGDSQIKK--NGRTSPISAISDKMGRIVPEKPVKFKVRAVVTVRNKNKEDFRETIVKQLDAFSEKIGRNVVLELISSDTDPRTGTPKKSKEAVLQDWSKKYNVKAERVNYTAEFMVDSNFGKPGAILVTNKHQKEFFMESIVVEGFACGPVHFPCDSWVQSKKDHPGKRVFFSNQPYLPSETPEGLKALREKELRDLQGDGKGVRKLSDRIYDYDVYNDLGNPDRGIEFVRPTLGGNKRPFPRRCRTGRLPTDTDMHAESRVEKPLPIYVPRDEQFEESKQNTFSASRLKAVLHNLVPSIMASISSNNHNFKGFGHIDSLYSEGLLLKLGLQDDLLQKLPMPYVVSRIQESSQGNLLKYDTPKIISKDKFAWLRDDEFARQALAGINPVSIERLKVFPPVGNLDPEIYGPQKSALKEEHIAGNLNGMTVQQALENNKLFIIDYHDIYLPFLDRINGLDGRKAYATRTIFFLTSVGTLKPIAIELNLPSNGPDSQSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLANHWLRTHACMEPFILSAHRQLSAMHPIYKLLEPHMRYTLVINGIARQTLISADGVIESCFTPGRYCMEISASAYKS-WRFDLEGLPSDLIRRGMAVPDPTKPHGLRLLIEDYPYAADGLLIWDAIENWVRTYVERYYTESSIICNDRELQAWYAESINVGHADLRHESWWPKLSTPEDLTSILTTLVWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDERDPEYVNFLADPQKYFFSSISSLLQSTKYMAVVDMLSTHSADEEYIGERSQPSTWSGDAEMVHAFYRFSAEIGRIEKEIERRNSNPELRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 913
MGSS V++R S F S +L K L+ P +R Q+KK G ++AIS+ + R VPEK VKFKVRAVVTVRNK+KED +ET+VK LDA ++ IGRNVVL+L+S+D DP+T PKKS EAVL+DWSKK N+K ERVNY AEF V+SNFGKPGAI V NKHQKEFFMESI +EGFACGP+HFPC+SWVQS KDHPGKR+FFSNQPYLPSETP GL+ALREKELRDL+GDGK VR LSDRIYD+D+YNDLGNPD+GIEF RP LGG +PRRCRTGRLPTDTDM AESRVEKP P+YVPRDEQFEESKQN FSA RLKAVLHNL+PS+MA+IS+NNH+FKGF IDSLYSEGLLLKLGLQD+LL+KLP+P VV +IQESSQG+LLKY+TPKI+SKDK+AWLRDDEFARQA+AGINPV+IERLK FPPV LDP+IYGPQ+SALKEEHI G LNGMTVQQAL+ NKL+++DYHD+YLPFLDRIN LDGRK YATRT+FFLT VGTL+PIAIEL+LP GP ++SKRVVTP VDAT+NW+WQLAKAHV SNDAGVHQL NHWLRTHA +EPFIL+AHRQLSAMHPI+KLL+PHMRYTL IN +ARQ+L++ADGVIESCFTPGRYCMEISA+AYK+ WRFDLEGLP+DLIRRGMAV DPT+PHG++LLIEDYPYA+DGLLIW AI+ WV+TYV RYY +SS++CND+ELQAWYAESINVGHADLRHESWWP L+TP+DL+SILTT++WLASAQHAALNFGQYPYGGYVPNRP LMRRLIP+E DPEY +ADPQKY+FSS+ SLLQ+TK+MAVVD LSTHS DEEY+GER QPS WSGDA+++ AFY FSAEI R+E+EIE+RNS+P+LRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI
Sbjct: 8 MGSS--VMERCS-FVASSKVVLNHRQKQLVLIPLEKRRV---------QQVKKVVRGPLVTVAAISEDVVRAVPEKAVKFKVRAVVTVRNKHKEDLKETLVKHLDALTDMIGRNVVLQLVSTDMDPKTKAPKKSNEAVLKDWSKKSNLKTERVNYIAEFTVESNFGKPGAITVINKHQKEFFMESITIEGFACGPLHFPCNSWVQSIKDHPGKRIFFSNQPYLPSETPAGLRALREKELRDLRGDGKDVRNLSDRIYDFDIYNDLGNPDKGIEFARPILGGPNIAYPRRCRTGRLPTDTDMLAESRVEKPNPMYVPRDEQFEESKQNAFSAGRLKAVLHNLIPSLMANISANNHDFKGFSDIDSLYSEGLLLKLGLQDELLKKLPLPKVVGKIQESSQGDLLKYNTPKIVSKDKYAWLRDDEFARQAIAGINPVNIERLKAFPPVSKLDPQIYGPQESALKEEHILGYLNGMTVQQALDENKLYMVDYHDVYLPFLDRINALDGRKTYATRTLFFLTPVGTLRPIAIELSLPPAGPSTRSKRVVTPAVDATTNWIWQLAKAHVGSNDAGVHQLVNHWLRTHASVEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLVNADGVIESCFTPGRYCMEISAAAYKNFWRFDLEGLPADLIRRGMAVADPTQPHGVKLLIEDYPYASDGLLIWSAIQKWVQTYVNRYYPDSSLVCNDKELQAWYAESINVGHADLRHESWWPTLATPDDLSSILTTIIWLASAQHAALNFGQYPYGGYVPNRPTLMRRLIPEEGDPEYAILVADPQKYYFSSLPSLLQATKFMAVVDTLSTHSPDEEYLGERHQPSIWSGDADIIEAFYGFSAEIRRVEREIEKRNSDPKLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 912
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5B9V3 | E-Value: 0.000e+0, PID: 92.22 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13... [more] |
| A0A5B6YYS6 | E-Value: 0.000e+0, PID: 81.72 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13... [more] |
| A0A2G2ZVP6 | E-Value: 0.000e+0, PID: 80.48 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13... [more] |
| A0A5B6YZ35 | E-Value: 0.000e+0, PID: 82.38 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13... [more] |
| K7QKT7 | E-Value: 0.000e+0, PID: 80.37 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13... [more] |
| A0A1U8FUC8 | E-Value: 0.000e+0, PID: 80.48 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13... [more] |
| A0A2R6PV77 | E-Value: 0.000e+0, PID: 76.59 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13... [more] |
| A0A2G3D0F1 | E-Value: 0.000e+0, PID: 80.25 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13... [more] |
| A0A2G2WQ11 | E-Value: 0.000e+0, PID: 80.37 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13... [more] |
| A0A7J7HWT1 | E-Value: 0.000e+0, PID: 76.55 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} (1.13... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |