MLSSSDNSSIYGIKKSCAIARLTKFWIADEMSVAALAYYQLYVCSTWRAV
SNSDLLWQNLTRRIWHCNNLRHNTWYEEYVHHHRLARNFRVGRYLYNPLH
LSPADENNNNENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRP
QNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGD
VVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHE
AVRGWHLLTELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEE
FPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRGASQRGV
LGCTNGGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVA
CSSDNTIHLHTYTYTYTYKLGVMVGLSIGEKHFIEGGVAQDIRTDGRRRL
VYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVF
INVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLS
IVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGAS
SDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSA
ISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIA
AAEACEEE*
| Relationships |
|---|
| The polypeptide, DCAR_019686, derives from mRNA, DCAR_019686. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5J5A3I2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524859.1}))
HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 258/372 (69.35%), Postives = 309/372 (83.06%), Query Frame = 0
Query: 43 VCSTWRAVSNSD-LLWQNLTRRIWHCNNLRHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPADENNNNENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLTELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRG-ASQRGVLGCTNGGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
VCSTWRAVS SD LWQNLTRRIW+ L H+TW +EY++ HR A+NF +GRY+Y LH PAD++N+ + L CRRL +SD++LAAGFSDG+VRLFHLP L+LSTF P + +GHF+PAVSGIILS+++L+FASLDGDIHVA +NA P R +HLG+V+NDG LVDF GC +WWVGLYAGVPGRAFHVW+ TEELVFIGGTLTD A+ GW LLTELT+L+GRVR+TS E AVACTSLR IVFDLR+Q I+LGEEEFPR ++VG+FDA +E F+IV+ RG ASVRRVGTLEEVCRF V G A+QRG+LGC NGGYALMC GG+IR WE+EHG LYSL ERIGEATALVAD+R++ A SSD TIH+ +
Sbjct: 78 VCSTWRAVSRSDHPLWQNLTRRIWNRTRLLHDTWRDEYIYRHRTAQNFYIGRYIYTILHFVPADDDND-DGLSCRRLALSDHHLAAGFSDGSVRLFHLPTRLHLSTFHPHPHDHIGHFAPAVSGIILSDTQLIFASLDGDIHVATLNNAAPLRTSHLGEVLNDGPLVDFTGCDRWWVGLYAGVPGRAFHVWDANTEELVFIGGTLTDDYALTGWRLLTELTDLVGRVRVTSPESAVACTSLRVIVFDLRNQGIILGEEEFPRGIIVGSFDANNEAFIIVNNRGVASVRRVGTLEEVCRFRVGGAAAQRGLLGCMNGGYALMCAGGVIRVWEVEHGGSLYSLRERIGEATALVADDRHVAASSSDGTIHIWDF 448
Match: A0A6P6S556 ((transcriptional regulator STERILE APETALA {ECO:0000313|RefSeq:XP_027061280.1}))
HSP 1 Score: 523.087 bits (1346), Expect = 2.099e-178
Identity = 256/383 (66.84%), Postives = 306/383 (79.90%), Query Frame = 0
Query: 34 AALAYYQLY-VCSTWRAVSNSDLLWQNLTRRIWHCNNL--RHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPADENNNNENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLT-ELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRGASQRGVLGCTNGGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
AA A L+ VCSTWRAVS SDLLWQNLTRRIW+ L HNTW EE+++ HR A NFR+ Y Y L L PAD NNNNE + C RL +SD+YLAAG S+G+V LFH+PN L++STF P +R+RLG FS +VSGIILS++++VFASLDGDIHVAM + PPRRAH G+VVNDGALVDF GC++WWVGLYAGVPGRAFHVWN TEELVF+GG+LTD EAV GWHLLT +LTE +GR+R+TS E AV CT+LR +VFDLR+ I+LGEE F R ++VG DA + F++VD RGSASVR VGTLEEVCRF +RGASQR VLGC NGGYA++C G+IR W IE+GE+LYSL ERIG+A ALVADER++ ACS D TIHL +
Sbjct: 68 AAPALCSLFQVCSTWRAVSRSDLLWQNLTRRIWNREQLLLTHNTWAEEFIYWHRTANNFRLHGYAYATLQLLPADYNNNNEGISCTRLALSDHYLAAGLSNGSVCLFHVPNRLHVSTFHPHHRDRLGRFSSSVSGIILSDTQVVFASLDGDIHVAMINYPNPPRRAHPGEVVNDGALVDFTGCNRWWVGLYAGVPGRAFHVWNSETEELVFVGGSLTDPEAVMGWHLLTDQLTEFVGRIRVTSHEAAVGCTNLRVVVFDLRNPDIILGEEVFQREIVVGCVDASGQSFMVVDNRGSASVRLVGTLEEVCRFTMRGASQRDVLGCMNGGYAMLCTAGVIRVWNIENGEYLYSLRERIGDANALVADERHVAACSRDTTIHLWDF 450
Match: A0A068VHM0 ((Uncharacterized protein {ECO:0000313|EMBL:CDP20107.1}) (Fragment))
HSP 1 Score: 518.464 bits (1334), Expect = 3.219e-177
Identity = 252/373 (67.56%), Postives = 300/373 (80.43%), Query Frame = 0
Query: 43 VCSTWRAVSNSDLLWQNLTRRIWHCNNL--RHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPADENNNNENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLT-ELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRGASQRGVLGCTNGGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
VCSTWRAVS SDLLWQNLTRRIW+ L HNTW EE+++ HR A NFR+ Y Y L L PAD NNNNE + C RL +SD+YLAAG S+G+V LFH+PN L++STF P +R+RLG FS +VSGIILS++++VFASLDGDIHVAM + PPRRAH G+VVNDGALVDF G ++WWVGLYAGVPGRAFHVWN TEELVF+GG+LTD EAV GWHLLT +LTE +GR+R+TS E AV CTSLR +VFDLR+ I+LGEE F R ++VG DA + F++VD RGSASVR VGTLEEVCRF +RGASQR VLGC NGGYA++C G+IR W IE+GE+LYSL ERIG+A ALVADER++ ACS D TIHL +
Sbjct: 35 VCSTWRAVSRSDLLWQNLTRRIWNREQLLLTHNTWAEEFIYWHRTANNFRLHGYAYATLQLLPADYNNNNEGISCTRLALSDHYLAAGLSNGSVCLFHVPNRLHVSTFHPHHRDRLGRFSSSVSGIILSDTQVVFASLDGDIHVAMINYPNPPRRAHPGEVVNDGALVDFTGSNRWWVGLYAGVPGRAFHVWNSETEELVFVGGSLTDPEAVMGWHLLTDQLTEFVGRIRVTSHEAAVGCTSLRVVVFDLRNPDIILGEEVFQREIVVGCVDASGQSFMVVDNRGSASVRLVGTLEEVCRFTMRGASQRDVLGCMNGGYAMLCTAGVIRVWNIENGEYLYSLRERIGDANALVADERHVAACSRDTTIHLWDF 407
Match: A0A4S4DIB8 ((Uncharacterized protein {ECO:0000313|EMBL:THG02535.1}))
HSP 1 Score: 516.924 bits (1330), Expect = 4.078e-176
Identity = 266/417 (63.79%), Postives = 316/417 (75.78%), Query Frame = 0
Query: 3 SSSDNSSIYGIKKSCAIARL-TKFWIADEMSVAALAYYQLYVCSTWRAVSNSDLLWQNLTRRIW--HCNNLRHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPADE--NNNNENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLTELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRGAS--QRGVLGCTNGGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
SSS S+ G+ + L ++ I +S LA VCSTWRAVS SDLLWQNLTRRIW H L H TW +E++ HR A NF RY+Y+ LH +PA + NNN++ L CRRL +SD YLAAG+SDG+VR+FHLP L+L TF P R+RLG FSPAVSGIILS++ ++FASLDGDIHV++T+NA+P RR+HLGDVVNDGALVDF GC++WWVGLYAGVPGRAFHVWNG TEELVF+GG+LTD EAV GWHLLTELT +GRVRLTS E AVA TSLR IVFDLR QVIVLG EEF R ++VG DA E IVD RGSASVRRV TL+EVCRF VRG S Q G+LGC N GYAL+C GG+I WE++ G HLY+L ERIGE +A+VAD+RY+ A +SD TIHL +
Sbjct: 31 SSSRRRSVNGVWPEPFVEALASQVAIDASLSSGRLASAPALVCSTWRAVSRSDLLWQNLTRRIWNRHHRLLHHLTWRDEFIFRHRTALNFTHARYIYSTLHFNPAIDHINNNDDGLSCRRLALSDRYLAAGYSDGSVRIFHLPFGLHLFTFFPLQRDRLGQFSPAVSGIILSDTHIIFASLDGDIHVSLTNNAVPTRRSHLGDVVNDGALVDFTGCNRWWVGLYAGVPGRAFHVWNGDTEELVFVGGSLTDPEAVMGWHLLTELTGFVGRVRLTSHESAVASTSLRVIVFDLRTQVIVLG-EEFRRGIIVGTVDANDEALFIVDNRGSASVRRVDTLDEVCRFRVRGVSTAQGGLLGCMNLGYALICAGGVISVWEVDRGAHLYNLGERIGETSAMVADDRYVAASTSDTTIHLWDF 446
Match: A0A1S3ZUZ2 ((transcriptional regulator STERILE APETALA-like {ECO:0000313|RefSeq:XP_016468216.1}))
HSP 1 Score: 504.982 bits (1299), Expect = 1.993e-171
Identity = 242/375 (64.53%), Postives = 303/375 (80.80%), Query Frame = 0
Query: 43 VCSTWRAVSNSDLLWQNLTRRIWHCNNLRHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPADENNNN-----ENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLTELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRGASQRGVLGCTNGGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
VCSTW+AVS+SDLLWQNLTRRIW+ +NL TW EEY++ H+ A NF RY YN LH P +++N++ ++L CRRL +SD++LAAGFSDG+V+LF+LP L+LSTF P +R+RLG FS AVSGIILS+ +LVFASLDGDIHV + +A PPRRAHLGDVVNDGALVDF GC QWWVGLYAGVPGRAFH+WN TEEL+F+GG LTD EA+ GWHLLTE+TEL+GR+R+T+RE AVACTSL+ +V DL++Q I++ + F R L+V +FDAR+E V VD RG ASVRR LEE+CRF+VRGA+QRG++GC NGGYA+ +G +IR WEI+HG +LYS+ ERIG+ A++ADERYL ACSSD TIHL +
Sbjct: 69 VCSTWQAVSHSDLLWQNLTRRIWNRHNLLRPTWREEYIYWHQTANNFLHHRYTYNTLHFVPENDDNDDNNNNVDSLFCRRLALSDHHLAAGFSDGSVQLFYLPTRLHLSTFHPHHRDRLGRFSRAVSGIILSDVQLVFASLDGDIHVVVIGDAAPPRRAHLGDVVNDGALVDFTGCDQWWVGLYAGVPGRAFHIWNKETEELLFVGGELTDPEALMGWHLLTEVTELVGRIRVTTRETAVACTSLQIMVIDLQNQGIIIRAQPFRRGLIVASFDARNETLVAVDNRGVASVRRADNLEEICRFNVRGANQRGIVGCMNGGYAMKWIGNVIRVWEIQHGAYLYSIRERIGDINAIIADERYLAACSSDATIHLWDF 443
Match: A0A830CVB4 ((Transcriptional regulator sterile apetala {ECO:0000313|EMBL:GFQ03117.1}))
HSP 1 Score: 503.056 bits (1294), Expect = 1.374e-170
Identity = 240/380 (63.16%), Postives = 302/380 (79.47%), Query Frame = 0
Query: 34 AALAYYQLY-VCSTWRAVSNSDLLWQNLTRRIWHCNNLRHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPADENNNNENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLTELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRGASQRGVLGCTNGGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
AA A + ++ VCSTWRA+S SDLLWQNLTRRIW+ +L +TW +EYV+ HR A NF+ R Y +++ P D NN+N+ L CRRL +SD++LAAGFS+G V L+HL L+L TF P++R+RLG FS AVSGI+LS++RLVFA+LDGDIH+A+ + P RRAHLGDVVNDGALVDF+GC +WWVGLYAGVPG AF +WN VTEELVFIGGTLTD EAV GWHLLTELT+LIGRVR+TSR+ AVACTSLR + FDL++Q +VLGEEE R ++VG+FDA ++ +I D RGSA+VRRV LEEVCRF VRG ++GC NGGY L+CVGG+IR WEIE+GE+LY E IG+ +A++ADERY+ A S+D TIH+ +
Sbjct: 69 AAQALFNVFQVCSTWRAISRSDLLWQNLTRRIWNVGSLVRDTWQDEYVYRHRTASNFQSSRCAYTTIYVVPTDNNNHNDGLSCRRLALSDHHLAAGFSNGAVHLYHLSTGLHLLTFYPEHRDRLGRFSSAVSGIVLSDTRLVFATLDGDIHMAVINGTAPLRRAHLGDVVNDGALVDFSGCDRWWVGLYAGVPGHAFRIWNSVTEELVFIGGTLTDPEAVMGWHLLTELTDLIGRVRVTSRDTAVACTSLRVVAFDLQNQGVVLGEEELRRGIIVGSFDAVNDSALITDARGSATVRRVVNLEEVCRFTVRGGRLGEIMGCVNGGYGLICVGGVIRVWEIENGEYLYRFREAIGDISAIIADERYVAAYSNDGTIHIWDF 448
Match: A0A5J5A689 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8526615.1}))
HSP 1 Score: 501.901 bits (1291), Expect = 2.763e-170
Identity = 245/382 (64.14%), Postives = 299/382 (78.27%), Query Frame = 0
Query: 34 AALAYYQLY-VCSTWRAVSNSDLLWQNLTRRIWHCNNLRHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPADENNNNENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLTELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRGASQRGVLGCTN--GGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
AA A + ++ VCSTWRAVS S+LLW+NLTRRIW+ N+L H+TW +EY++ HR ARNFR+ RY+Y LH P+ NNN+ L CRRL +SD+YLAAGFSDGTVRLFH+P L+ STF P R+RLG F+PAVSGIILS+++L+FASLDGDIHVA +NA P RR+ LGDV+NDGALVDF GC++WWVGLYAGV GR+FH+W+G +EE+VFIGG+LT+ A+ GW LTE TE +GRVR+TS+E AVACT LR IVFDLR Q IVLGEEEF RR++VG FDA +E F +V+ RG A VRRV TLE+VCRF V S RG+LGC N G YALMC G I AW+ E G LY ERIGEA A+VAD+RY+ A S+D TIHL +
Sbjct: 65 AAPALFNIFQVCSTWRAVSRSELLWENLTRRIWNRNHLLHHTWRDEYIYRHRTARNFRLSRYIYTTLHFVPS--ANNNDGLSCRRLALSDHYLAAGFSDGTVRLFHIPTRLHFSTFHPYPRDRLGLFAPAVSGIILSDTQLIFASLDGDIHVATINNAAPLRRSQLGDVLNDGALVDFTGCNRWWVGLYAGVQGRSFHIWDGESEEIVFIGGSLTNTVALNGWRSLTEPTEFVGRVRVTSQETAVACTRLRVIVFDLRHQGIVLGEEEFRRRIIVGTFDASNEAFAVVNSRGVARVRRVFTLEQVCRFPVEVESMRGLLGCMNGVGVYALMCGQGFITAWDSEDGRRLYDFTERIGEANAMVADDRYVAASSTDGTIHLWDF 444
Match: A0A1J6J4Z5 ((Transcriptional regulator sterile apetala {ECO:0000313|EMBL:OIT04943.1}))
HSP 1 Score: 498.819 bits (1283), Expect = 4.495e-169
Identity = 240/376 (63.83%), Postives = 299/376 (79.52%), Query Frame = 0
Query: 43 VCSTWRAVSNSDLLWQNLTRRIWHCNNLRHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPADENNNN------ENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLTELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRGASQRGVLGCTNGGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
VCSTW+AVS+SDLLWQNLTRRIW+ +NL TW EEY++ H+ A NF RY YN LH P + N++ ++L CRRL +SD++LAAGFSDG+V+LF+LP L+LSTF P +R+RLG FS AVSGIILS+ +LVFASLDGDIHV + +A PPRRAHLGDVVNDGALVDF GC QWWVGLYAGVPGRAFH+WN TEEL+F+GG LTD EA+ GWHLLTE+TEL+GR+R+T++E AVACTSL+ +V DL++Q I++ + F R +V +FDAR+E V VD R ASVRR LEE+CRF+VRGA+QRG++GC NGGYALM +G +IR WEI+HG +LYS+ ERIG+ A++ADERYL ACSS TIHL +
Sbjct: 69 VCSTWQAVSHSDLLWQNLTRRIWNRHNLLRQTWREEYIYWHQTANNFLHHRYTYNTLHFVPENNENDDNNNNNIDSLFCRRLALSDHHLAAGFSDGSVQLFYLPTRLHLSTFHPHHRDRLGRFSRAVSGIILSDVQLVFASLDGDIHVVVIGDAAPPRRAHLGDVVNDGALVDFTGCDQWWVGLYAGVPGRAFHIWNKETEELLFVGGELTDPEALMGWHLLTEVTELVGRIRVTTQETAVACTSLQIMVIDLQNQGIIIRAQPFRRGHIVASFDARNETLVAVDNRDVASVRRADDLEEICRFNVRGANQRGIVGCMNGGYALMWIGNVIRVWEIQHGAYLYSIRERIGDINAIIADERYLAACSSGATIHLWDF 444
Match: A0A1S4DE54 ((transcriptional regulator STERILE APETALA-like {ECO:0000313|RefSeq:XP_016511484.1}))
HSP 1 Score: 493.426 bits (1269), Expect = 6.966e-167
Identity = 239/375 (63.73%), Postives = 299/375 (79.73%), Query Frame = 0
Query: 43 VCSTWRAVSNSDLLWQNLTRRIWHCNNLRHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPADENNNN-----ENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLTELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRGASQRGVLGCTNGGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
VCSTW+AVS+SDLLWQNLTRRIW+ +NL TW EEY++ H+ A NF RY YN LH P + +N++ ++L CRRL +SD++LAAGFSDG+V+LF++P L LSTF P +R+RLG FS AVSGIILS+ +LVFASLDGDIHV + +A PPRRAHLGDVVNDGALVDF GC QWWVGLYAGVPGRAFH+WN TEEL+F+GG LTD EA+ GWHLLTE+TEL+GR+R+T+RE AVACTSL+ +V DL++Q I++ + F R L+V +FDAR+E V VD RG A+VRR LEE+CRF+V GA+QRG++GC NGGYALM + +IR EI+HG +LYS+ ERIG+ A++ADERYL ACSSD TIHL +
Sbjct: 69 VCSTWQAVSHSDLLWQNLTRRIWNRHNLLRPTWREEYIYWHQTANNFLHHRYTYNTLHFVPENNDNDDNNNNIDSLFCRRLALSDHHLAAGFSDGSVQLFYIPTRLQLSTFHPHHRDRLGPFSRAVSGIILSDVQLVFASLDGDIHVVVIGDAAPPRRAHLGDVVNDGALVDFTGCDQWWVGLYAGVPGRAFHIWNKETEELLFVGGELTDPEALMGWHLLTEVTELVGRIRVTTRETAVACTSLQIMVIDLQNQGIIIRAQPFRRGLIVASFDARNETLVAVDNRGIATVRRADNLEEICRFNVGGANQRGIVGCMNGGYALMWIRNVIRVREIQHGAYLYSIRERIGDINAIIADERYLAACSSDATIHLWDF 443
Match: A0A1U8H7S4 ((transcriptional regulator STERILE APETALA-like {ECO:0000313|RefSeq:XP_016579385.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 2.573e-166
Identity = 238/377 (63.13%), Postives = 297/377 (78.78%), Query Frame = 0
Query: 38 YYQLYVCSTWRAVSNSDLLWQNLTRRIWHCNNLRHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPA-DENNNNENLVCRRLTISDYYLAAGFSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDNAIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGVPGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLTELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDRRGSASVRRVGTLEEVCRFDVRGASQRGVLGC-TNGGYALMCVGGLIRAWEIEHGEHLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
Y+Q VCSTWRAVS SDLLWQ+LT RIW+ ++L +TW++EY++ H+ + N R RY+Y+ LH P + +NNN+ L CRRL +SD++LAAGFSDG+V+LFHLP ++LSTFRPQ R+RLG +S AVSGIIL++ LVFASLDGDIHV + A PPRRAHLGDVVNDGALVDF GC +WW+GLYAGVPGRAFH+WN TEEL+F+ G LTD EAV GWHLLTELTEL+GRVR+T+R+ AVACT R +V DL +Q ++L E F + L+VG+FDA +E V VD RG A+V R L+E CRF+VRGASQRGV+G N GY +MCVGGLIR WE+E+G +LYSL E+IGE A+ ADER++VACSSD TI L +
Sbjct: 3 YFQ--VCSTWRAVSRSDLLWQSLTTRIWNRHHLLRHTWHDEYIYWHQTSNNLRHSRYIYHTLHFVPEINNDNNNDGLSCRRLALSDHHLAAGFSDGSVQLFHLPTRVHLSTFRPQQRDRLGRYSRAVSGIILTDENLVFASLDGDIHVVVIGGAAPPRRAHLGDVVNDGALVDFTGCDRWWIGLYAGVPGRAFHIWNSETEELIFVDGDLTDPEAVTGWHLLTELTELVGRVRITARDTAVACTGPRLVVIDLHNQGLILRERFFQQELIVGSFDATNELLVAVDGRGVATVCRTEDLDESCRFNVRGASQRGVIGSMNNSGYGVMCVGGLIRVWEVENGVYLYSLREKIGEVNAMHADERHIVACSSDGTIRLWDF 377
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5A3I2 | E-Value: 0.000e+0, PID: 69.35 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more] |
| A0A6P6S556 | E-Value: 2.099e-178, PID: 66.84 | (transcriptional regulator STERILE APETALA {ECO:00... [more] |
| A0A068VHM0 | E-Value: 3.219e-177, PID: 67.56 | (Uncharacterized protein {ECO:0000313|EMBL:CDP2010... [more] |
| A0A4S4DIB8 | E-Value: 4.078e-176, PID: 63.79 | (Uncharacterized protein {ECO:0000313|EMBL:THG0253... [more] |
| A0A1S3ZUZ2 | E-Value: 1.993e-171, PID: 64.53 | (transcriptional regulator STERILE APETALA-like {E... [more] |
| A0A830CVB4 | E-Value: 1.374e-170, PID: 63.16 | (Transcriptional regulator sterile apetala {ECO:00... [more] |
| A0A5J5A689 | E-Value: 2.763e-170, PID: 64.14 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8526... [more] |
| A0A1J6J4Z5 | E-Value: 4.495e-169, PID: 63.83 | (Transcriptional regulator sterile apetala {ECO:00... [more] |
| A0A1S4DE54 | E-Value: 6.966e-167, PID: 63.73 | (transcriptional regulator STERILE APETALA-like {E... [more] |
| A0A1U8H7S4 | E-Value: 2.573e-166, PID: 63.13 | (transcriptional regulator STERILE APETALA-like {E... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |