Resource Type:
Polypeptide
Name:
DCAR_017343
Identifier:
DCAR_017343.mRNA-protein
Sequence:
MGASDVGEEVGMAGGHDEKIFVTVRLRPLNRKEIARNDVADWDCINGDTV
IYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGI
NSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEI
YNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCE
AQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDL
AGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSK
LTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQV
NVIISDKALVKHLQRELTRLESELSTGSTYVASKYSALLREKELQIEKLE
REVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDA
GYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHSFFPGSSED
LHPDPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETED
FSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSL
LSKEETESIAPSLKTNREALTFPCSEDRQVALPYIEDSKINCIYDTPSPE
KRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDDTPP
NGCEEYHTQKPHASQSENSRLNYGSDVVISSSNGSQSPNKNGVDIELDTQ
EQGKLSAEIISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNMCLKS
VKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLL
FNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHE
RHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWTNSGDLDH
IADSAFVVAKLIGLTEPGKASKEMFGLKFAPWSSRRSYSVKRSLISIL*
Sequence Length:
999
Sequence Checksum:
d9152a3485bd16aed54ab46fa5b19ef5
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_017343, derives from mRNA, DCAR_017343. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ARJ5 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1113.98 bits (2880), Expect = 0.000e+0
Identity = 584/989 (59.05%), Postives = 721/989 (72.90%), Query Frame = 0
Match: A0A5B7ARJ5 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1113.98 bits (2880), Expect = 0.000e+0
Identity = 584/989 (59.05%), Postives = 721/989 (72.90%), Query Frame = 0
Query: 13 AGGHDEKIFVTVRLRPLNRKEIARNDVADWDCINGDTVIYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGINSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEIYNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCEAQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQVNVIISDKALVKHLQRELTRLESEL-STGSTYVASKYSALLREKELQIEKLEREVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDAGYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHSFFPGSSEDLHPDPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETEDFSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSLLSKEETESIAPSLKTNREALTFPCSEDRQVALPYIEDSKINCIYDTPSPEKRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDDTPPNGCEEYHTQKPHASQSENSRLNYGSDVVISSSNGSQSPNKNGVDIELDTQEQGKLSAEIISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNMCLKSVKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLLFNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHERHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWT-NSGDLDHIADSAFVVAKLIGLTEPGKASKEMFGLKFAPWSS-RRSYSVKRSLISIL 998
GG +EKIFV+VRLRPLN KE+ RNDV+DW+CIN +T+I++N NL +PDRSMYP+AYTFD+VF +CSTRQVY EGAKEVALSV++GINSS+FAYGQTSSGKT+TMTGITEYTI+DIYDYI+KHT+REF LK SAMEIYNESVRDLLS D+ PLRLLDDPERGTIVEKL+EE +R+WDH MELLS+CEAQRQIGETSLNETSSRSHQIIR+T+ESSTRE L KDNSSTL ASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH+PFRDSKLTRILQSSLGGNART+IICTMSPAR HVEQSRNTLLFASCAKEV+ NAQVNV++SDKALVKHLQREL RLESEL S G T+ S +ALLREK+ QI KLE+E+ DLTLQRD A+SQI+++L+ +G+DG + V NHYPHLRVQ SP++G + A PHS+D +T TS +SD ++ + ++ P E+ + L+ ++ SD Q ++ + +SN TSED+CKEVRCIETED + + ES+ LS+ + G+S V+ +G+ +T++E + P DR++ S I+ + SPEK SP + L ++ SR T SRS ++ + +LS + ++TP NG E+ +P + S LNYG+DV S SQS + +++ Q + E + NT +A LE M+E E Q D+ +T+ ++ K+VKDVGLDP+E D S+WPSEF+RLQ++IIELWH CNVSLVHRT+FFLLF GDPTD+IYM+VELR L FLK+TFS+GNQTVE TL ASS+KA+R ER MLS +M K+L + ER+SLYLKW I LN+K+RR+QLA LWT + D+DHI DSA VVAKL+G EPGKA KEMFGL FAP S+ RRSYS+KRS+ S+L
Sbjct: 17 VGGREEKIFVSVRLRPLNEKEVGRNDVSDWECINNNTIIFRNGNLPVPDRSMYPTAYTFDRVFRSNCSTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMTGITEYTIADIYDYIEKHTKREFILKLSAMEIYNESVRDLLSADSIPLRLLDDPERGTIVEKLSEETVRNWDHAMELLSICEAQRQIGETSLNETSSRSHQIIRLTIESSTREFLGKDNSSTLAASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTSIICTMSPARSHVEQSRNTLLFASCAKEVTNNAQVNVVMSDKALVKHLQRELARLESELRSPGPTFATSDSAALLREKDFQIAKLEKEIIDLTLQRDVAQSQIRDLLQLVGDDGDSM--VGSNHYPHLRVQKSPESGNTIPERSALADPHSLDAHIRTFDTSQYSDGHSRSSSDEHYLQLPEFEENFLHNDTSPQLSVSTNFVRSDSGQGWEEIEEQSNRTSEDLCKEVRCIETEDSNTTRYVESNPLSSKENAGVSTLKVVGDGD---------------------------------RTDQELVPHPLKGDREL-------SCIHPPFVVLSPEKPSP-WLLTEDTFSSRGLKLTRSRSCKASLLNSLSPLWFDKVEKNENTPANGFEKDFIGRPEGFSRKLSALNYGADVESLSRKASQSSIGSANVDKIEAQNDKTSTDENCTSINTSVAGLEEMAEHQHEKQVADSPVQKTELKDSIASKNVKDVGLDPIEDDSKILSDWPSEFRRLQREIIELWHACNVSLVHRTYFFLLFKGDPTDAIYMQVELRTLSFLKDTFSRGNQTVEYNWTLAPASSMKALRREREMLSKEMQKRLSEHERESLYLKWGIGLNTKNRRLQLAKRLWTATTEDMDHIEDSAIVVAKLVGFIEPGKAPKEMFGLNFAPQSTRRRSYSLKRSVASLL 962
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AP28 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1113.6 bits (2879), Expect = 0.000e+0
Identity = 584/989 (59.05%), Postives = 721/989 (72.90%), Query Frame = 0
Match: A0A5B7AP28 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1113.6 bits (2879), Expect = 0.000e+0
Identity = 584/989 (59.05%), Postives = 721/989 (72.90%), Query Frame = 0
Query: 13 AGGHDEKIFVTVRLRPLNRKEIARNDVADWDCINGDTVIYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGINSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEIYNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCEAQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQVNVIISDKALVKHLQRELTRLESEL-STGSTYVASKYSALLREKELQIEKLEREVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDAGYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHSFFPGSSEDLHPDPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETEDFSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSLLSKEETESIAPSLKTNREALTFPCSEDRQVALPYIEDSKINCIYDTPSPEKRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDDTPPNGCEEYHTQKPHASQSENSRLNYGSDVVISSSNGSQSPNKNGVDIELDTQEQGKLSAEIISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNMCLKSVKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLLFNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHERHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWT-NSGDLDHIADSAFVVAKLIGLTEPGKASKEMFGLKFAPWSS-RRSYSVKRSLISIL 998
GG +EKIFV+VRLRPLN KE+ RNDV+DW+CIN +T+I++N NL +PDRSMYP+AYTFD+VF +CSTRQVY EGAKEVALSV++GINSS+FAYGQTSSGKT+TMTGITEYTI+DIYDYI+KHT+REF LK SAMEIYNESVRDLLS D+ PLRLLDDPERGTIVEKL+EE +R+WDH MELLS+CEAQRQIGETSLNETSSRSHQIIR+T+ESSTRE L KDNSSTL ASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH+PFRDSKLTRILQSSLGGNART+IICTMSPAR HVEQSRNTLLFASCAKEV+ NAQVNV++SDKALVKHLQREL RLESEL S G T+ S +ALLREK+ QI KLE+E+ DLTLQRD A+SQI+++L+ +G+DG + V NHYPHLRVQ SP++G + A PHS+D +T TS +SD ++ + ++ P E+ + L+ ++ SD Q ++ + +SN TSED+CKEVRCIETED + + ES+ LS+ + G+S V+ +G+ +T++E + P DR++ S I+ + SPEK SP + L ++ SR T SRS ++ + +LS + ++TP NG E+ +P + S LNYG+DV S SQS + +++ Q + E + NT +A LE M+E E Q D+ +T+ ++ K+VKDVGLDP+E D S+WPSEF+RLQ++IIELWH CNVSLVHRT+FFLLF GDPTD+IYM+VELR L FLK+TFS+GNQTVE TL ASS+KA+R ER MLS +M K+L + ER+SLYLKW I LN+K+RR+QLA LWT + D+DHI DSA VVAKL+G EPGKA KEMFGL FAP S+ RRSYS+KRS+ S+L
Sbjct: 17 VGGREEKIFVSVRLRPLNEKEVGRNDVSDWECINNNTIIFRNGNLPVPDRSMYPTAYTFDRVFRSNCSTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMTGITEYTIADIYDYIEKHTKREFILKLSAMEIYNESVRDLLSADSIPLRLLDDPERGTIVEKLSEETVRNWDHAMELLSICEAQRQIGETSLNETSSRSHQIIRLTIESSTREFLGKDNSSTLAASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTSIICTMSPARSHVEQSRNTLLFASCAKEVTNNAQVNVVMSDKALVKHLQRELARLESELRSPGPTFATSDSAALLREKDFQIAKLEKEIIDLTLQRDVAQSQIRDLLQLVGDDGDSM--VGSNHYPHLRVQKSPESGNTIPERSALADPHSLDAHIRTFDTSQYSDGHSRSSSDEHYLQLPEFEENFLHNDTSPQLSVSTNFVRSDSGQGWEEIEEQSNRTSEDLCKEVRCIETEDSNTTRYVESNPLSSKENAGVSTLKVVGDGD---------------------------------RTDQELVPHPLKGDREL-------SCIHPPFVVLSPEKPSP-WLLTEDTFSSRGLKLTRSRSCKASLLNSLSPLWFDKVEKNENTPANGFEKDFIGRPEGFSRKLSALNYGADVESLSRKASQSSIGSANVGKIEAQNDKTSTDENCTSINTSVAGLEEMAEHQHEKQVADSPVQKTELKDSIASKNVKDVGLDPIEDDSKILSDWPSEFRRLQREIIELWHACNVSLVHRTYFFLLFKGDPTDAIYMQVELRTLSFLKDTFSRGNQTVEYNWTLAPASSMKALRREREMLSKEMQKRLSEHERESLYLKWGIGLNTKNRRLQLAKRLWTATTEDMDHIEDSAIVVAKLVGFIEPGKAPKEMFGLNFAPQSTRRRSYSLKRSVASLL 962
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7APJ0 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1110.9 bits (2872), Expect = 0.000e+0
Identity = 582/988 (58.91%), Postives = 721/988 (72.98%), Query Frame = 0
Match: A0A5B7APJ0 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1110.9 bits (2872), Expect = 0.000e+0
Identity = 582/988 (58.91%), Postives = 721/988 (72.98%), Query Frame = 0
Query: 14 GGHDEKIFVTVRLRPLNRKEIARNDVADWDCINGDTVIYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGINSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEIYNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCEAQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQVNVIISDKALVKHLQRELTRLESEL-STGSTYVASKYSALLREKELQIEKLEREVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDAGYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHSFFPGSSEDLHPDPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETEDFSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSLLSKEETESIAPSLKTNREALTFPCSEDRQVALPYIEDSKINCIYDTPSPEKRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDDTPPNGCEEYHTQKPHASQSENSRLNYGSDVVISSSNGSQSPNKNGVDIELDTQEQGKLSAEIISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNMCLKSVKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLLFNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHERHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWT-NSGDLDHIADSAFVVAKLIGLTEPGKASKEMFGLKFAPWSS-RRSYSVKRSLISIL 998
GG +EKIFV+VRLRP+N KE+ RN+V+DW+CIN +T+I++N NL +PDRSMYP+AYTFD+VF +CSTRQVY EGAKEVALSV++GINSS+FAYGQTSSGKT+TMTGITEYTI+DIYDYI+KHT+REF LK SAMEIYNESVRDLLS D+ PLRLLDDPERGTIVEKL+EE +R+WDH MELLS+CEAQRQIGETSLNETSSRSHQIIR+T+ESSTRE L KDNSSTL ASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH+PFRDSKLTRILQSSLGGNART+IICTMSPAR HVEQSRNTLLFASCAKEV+ NAQVNV++SDKALVKHLQREL RLESEL S G T+ S +ALLREK+ QI KLE+E+ DLTLQRD A+SQI+++L+ +G+DG + V NHYPHLRVQ SP++G + A PHS+D +T TS +SD ++ + ++ P E+ + L+ ++ SD Q ++ + +SN TSED+CKEVRCIETED + + ES+ LS+ + G+S V+ +G+ +T++E + P DR++ S I+ + SPEK SP + L ++ SR T SRS ++ + +LS + ++TP NG E+ +P + S LNYG+DV S SQS + +++ Q + E + NT +A LE M+E E Q D+ +T+ ++ K+VKDVGLDP+E D S+WPSEF+RLQ++IIELWH CNVSLVHRT+FFLLF GDPTD+IYM+VELR L FLK+TFS+GNQTVE TL ASS+KA+R ER MLS +M K+L + ER+SLYLKW I LN+K+RR+QLA LWT + D+DHI DSA VVAKL+G EPGKA KEMFGL FAP S+ RRSYS+KRS+ S+L
Sbjct: 22 GGREEKIFVSVRLRPMNEKEVERNEVSDWECINDNTIIFRNGNLPVPDRSMYPTAYTFDRVFRSNCSTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMTGITEYTIADIYDYIEKHTKREFILKLSAMEIYNESVRDLLSADSIPLRLLDDPERGTIVEKLSEETVRNWDHAMELLSICEAQRQIGETSLNETSSRSHQIIRLTIESSTREFLGKDNSSTLAASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTSIICTMSPARSHVEQSRNTLLFASCAKEVTNNAQVNVVMSDKALVKHLQRELARLESELRSPGPTFATSDSAALLREKDFQIAKLEKEIIDLTLQRDVAQSQIRDLLQLVGDDGDSM--VGSNHYPHLRVQKSPESGNTIPERSALADPHSLDAHIRTFDTSQYSDGHSRSSSDEHYLQLPEFEENFLHNDTSPQLSVSTNFVRSDSGQGWEEIEEQSNRTSEDLCKEVRCIETEDSNTTRYVESNPLSSKENAGVSTLKVVGDGD---------------------------------RTDQELVPHPLKGDREL-------SCIHPPFVVLSPEKPSP-WLLTEDTFSSRGLKLTRSRSCKASLLNSLSPLWFDKVEKNENTPANGFEKDFIGRPEGFSRKLSALNYGADVESLSRKASQSSIGSANVGKIEAQNDKTSTDENCTSINTSVAGLEEMAEHQHEKQVADSPVQKTELKDSIASKNVKDVGLDPIEDDSKILSDWPSEFRRLQREIIELWHACNVSLVHRTYFFLLFKGDPTDAIYMQVELRTLSFLKDTFSRGNQTVEYNWTLAPASSMKALRREREMLSKEMQKRLSEHERESLYLKWGIGLNTKNRRLQLAKRLWTATTEDMDHIEDSAIVVAKLVGFIEPGKAPKEMFGLNFAPQSTRRRSYSLKRSVASLL 966
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AN29 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1105.51 bits (2858), Expect = 0.000e+0
Identity = 571/969 (58.93%), Postives = 710/969 (73.27%), Query Frame = 0
Match: A0A5B7AN29 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1105.51 bits (2858), Expect = 0.000e+0
Identity = 571/969 (58.93%), Postives = 710/969 (73.27%), Query Frame = 0
Query: 14 GGHDEKIFVTVRLRPLNRKEIARNDVADWDCINGDTVIYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGINSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEIYNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCEAQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQVNVIISDKALVKHLQRELTRLESEL-STGSTYVASKYSALLREKELQIEKLEREVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDAGYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHSFFPGSSEDLHPDPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETEDFSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSLLSKEETESIAPSLKTNREALTFPCSEDRQVALPYIEDSKINCIYDTPSPEKRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDDTPPNGCEEYHTQKPHASQSENSRLNYGSDVVISSSNGSQSPNKNGVDIELDTQEQGKLSAEIISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNMCLKSVKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLLFNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHERHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWTNSGDLDHIADSAFVVAKLIGLTEPGKASKEMFGLKFAP 981
GG +EKIFV+VRLRP+N KE+ RN+V+DW+CIN +T+I++N NL +PDRSMYP+AYTFD+VF +CSTRQVY EGAKEVALSV++GINSS+FAYGQTSSGKT+TMTGITEYTI+DIYDYI+KHT+REF LK SAMEIYNESVRDLLS D+ PLRLLDDPERGTIVEKL+EE +R+WDH MELLS+CEAQRQIGETSLNETSSRSHQIIR+T+ESSTRE L KDNSSTL ASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH+PFRDSKLTRILQSSLGGNART+IICTMSPAR HVEQSRNTLLFASCAKEV+ NAQVNV++SDKALVKHLQREL RLESEL S G T+ S +ALLREK+ QI KLE+E+ DLTLQRD A+SQI+++L+ +G+DG + V NHYPHLRVQ SP++G + A PHS+D +T TS +SD ++ + ++ P E+ + L+ ++ SD Q ++ + +SN TSED+CKEVRCIETED + + ES+ LS+ + G+S V+ +G+ +T++E + P DR++ S I+ + SPEK SP + L ++ SR T SRS ++ + +LS + ++TP NG E+ +P + S LNYG+DV S SQS + +++ Q + E + NT +A LE M+E E Q D+ +T+ ++ K+VKDVGLDP+E D S+WPSEF+RLQ++IIELWH CNVSLVHRT+FFLLF GDPTD+IYM+VELR L FLK+TFS+GNQTVEDG T T+ SS+KA+R ER +LS +M K L + +R SL+LKW I LN+K+RR+QLAN LWTN+ D+DHI+DSAFVVAKL+G EPG+A KEMFGL FAP
Sbjct: 18 GGREEKIFVSVRLRPMNEKEVERNEVSDWECINDNTIIFRNGNLPVPDRSMYPTAYTFDRVFRSNCSTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMTGITEYTIADIYDYIEKHTKREFILKLSAMEIYNESVRDLLSADSIPLRLLDDPERGTIVEKLSEETVRNWDHAMELLSICEAQRQIGETSLNETSSRSHQIIRLTIESSTREFLGKDNSSTLAASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTSIICTMSPARSHVEQSRNTLLFASCAKEVTNNAQVNVVMSDKALVKHLQRELARLESELRSPGPTFATSDSAALLREKDFQIAKLEKEIIDLTLQRDVAQSQIRDLLQLVGDDGDSM--VGSNHYPHLRVQKSPESGNTIPERSALADPHSLDAHIRTFDTSQYSDGHSRSSSDEHYLQLPEFEENFLHNDTSPQLSVSTNFVRSDSGQGWEEIEEQSNRTSEDLCKEVRCIETEDSNTTRYVESNPLSSKENAGVSTLKVVGDGD---------------------------------RTDQELVPHPLKGDREL-------SCIHPPFVVLSPEKPSP-WLLTEDTFSSRGLKLTRSRSCKASLLNSLSPLWFDKVEKNENTPANGFEKDFIGRPEGFSRKLSALNYGADVESLSRKASQSSIGSANVGKIEAQNDKTSTDENCTSINTSVAGLEEMAEHQHEKQVADSPVQKTELKDSIASKNVKDVGLDPIEDDSKILSDWPSEFRRLQREIIELWHACNVSLVHRTYFFLLFKGDPTDAIYMQVELRTLSFLKDTFSRGNQTVEDGWTQTLPSSMKALRRERELLSKEMRKTLSEHDRASLFLKWGIKLNTKNRRLQLANCLWTNTEDMDHISDSAFVVAKLVGFIEPGQAPKEMFGLNFAP 943
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ANT8 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1095.11 bits (2831), Expect = 0.000e+0
Identity = 582/972 (59.88%), Postives = 698/972 (71.81%), Query Frame = 0
Match: A0A5B7ANT8 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1095.11 bits (2831), Expect = 0.000e+0
Identity = 582/972 (59.88%), Postives = 698/972 (71.81%), Query Frame = 0
Query: 13 AGGHDEKIFVTVRLRPLNRKEIARNDVADWDCINGDTVIYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGINSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEIYNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCEAQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQVNVIISDKALVKHLQRELTRLESEL-STGSTYVASKYSALLREKELQIEKLEREVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDAGYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHSFFPGSSED-LHPDPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETEDFSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSLLSKEETESIAPSLKTNREALTFPCSEDRQVALPYIEDSKINCIYDTPSPEKRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDDTPPNGCEEYHTQKPHASQSENSRLNYGSDVVISSSNGSQSPNKNGVDIELDTQEQGKLSA-EIISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNMCLKSVKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLLFNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHERHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWTNSGDLDHIADSAFVVAKLIGLTEPGKASKEMFGLKFAP 981
GG +EKIFV+VRLRPLN KE+ RNDV+DW+CIN +T+I++N NL +PDRSMYP+AYTFD+VF +CSTRQVY EGAKEVALSV++GINSS+FAYGQTSSGKT+TMTGITEYTI+D+YDYIQKHTEREF LK+SAMEIYNESVRDLLS+D+TPLRLLDDPERGTI+EKLTEE LR+WDHVMELLS+CEAQRQIGETSLNETSSRSHQIIR+T+ESSTRE L KDNSSTL ASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH+PFRDSKLTRILQSSLGGN RTAIICTMSP R HVEQSRNTLLFASCAKEV+TNAQVNV++SDKALVKHLQREL RL+SEL S GST+ S +ALLR+K+LQIEKLE+E+ +LTLQRD A+SQ+Q++++ +G+D N YPHLRVQ SP++ V A S+DV +T TS SD ++ + P E+ LH + L ST + SD Q ++ +GK+N TSED+CK VRCIETED + H ES PS +E ++ P EDR+++ I+ + SPEK SP + ++ SRS T SRS +S + +LSSP + +TP NG E+ +P + S LNYG+DV S SQ+ + E GK S E + NT A LE +E E Q D+ A +T+ N+ LK+VKDVGLDP+E D S+WPSEFK+LQ++IIELWH CNVSLVHRT+FFLLF GDPTDSIYM+VELRRL FLK+TFSQGNQTVEDG T T+ SS+KA+R ER +LS +M K L + +R SL+LKW I LN+K+RR+QLAN LWTN+ D+DHI+DSAFVVAKL+G EPG+A KEMFGL FAP
Sbjct: 17 VGGREEKIFVSVRLRPLNEKEVGRNDVSDWECINNNTIIFRNGNLPVPDRSMYPTAYTFDRVFRSNCSTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMTGITEYTIADVYDYIQKHTEREFILKYSAMEIYNESVRDLLSSDSTPLRLLDDPERGTIIEKLTEETLREWDHVMELLSICEAQRQIGETSLNETSSRSHQIIRLTIESSTREFLGKDNSSTLAASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNGRTAIICTMSPTRSHVEQSRNTLLFASCAKEVTTNAQVNVVMSDKALVKHLQRELARLDSELRSPGSTFATSDSAALLRKKDLQIEKLEKEIVNLTLQRDVAQSQVQDLVQIVGDDRDSKIWAGLNQYPHLRVQKSPESENTVTERSALADSPSLDVHIRTFDTSQHSDGHYGSSCDEYFLQLPEFEENFLHNGTSPQLLISTDSV-RSDSGQGWEEIEGKTNRTSEDLCKVVRCIETEDSNTTRH-------------------------------------------------VESNPPS---PQELVSHPSKEDRELSF-------IHPPFVVLSPEKPSP-WPRTEDTFNSRSLKLTKSRSCKSSLMISLSSPWFDKVEKNKNTPANGFEKDFIGRPDGFPRKLSALNYGADVQRLSRKSSQTSMGSAT-----VAENGKSSTDESCTRINTSTAGLEEKAEHQLEKQAADSPAQKTELEDNIALKNVKDVGLDPIEDDSKILSDWPSEFKKLQREIIELWHACNVSLVHRTYFFLLFKGDPTDSIYMQVELRRLSFLKDTFSQGNQTVEDGWTQTLPSSMKALRRERELLSKEMRKTLSEHDRASLFLKWGIKLNTKNRRLQLANCLWTNTEDMDHISDSAFVVAKLVGFIEPGQAPKEMFGLNFAP 922
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LE64 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7130788.1}))
HSP 1 Score: 1093.18 bits (2826), Expect = 0.000e+0
Identity = 587/1002 (58.58%), Postives = 722/1002 (72.06%), Query Frame = 0
Match: A0A834LE64 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7130788.1}))
HSP 1 Score: 1093.18 bits (2826), Expect = 0.000e+0
Identity = 587/1002 (58.58%), Postives = 722/1002 (72.06%), Query Frame = 0
Query: 14 GGHDEKIFVTVRLRPLNRKEIARNDVADWDCINGDTVIYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGINSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEIYNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCEAQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQVNVIISDKALVKHLQRELTRLESEL-STGSTYVASKYSALLREKELQIEKLEREVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDAGYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHSFFPGSSED------------LHPDPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETEDFSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSLLSKEETESIAPSLKTNREALTFPCSEDRQV--ALPYIEDSKINCIYDTPSPEKRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDDTP-PNGCEEYHTQKPHASQSENSRLNYGSDVVISSSNGSQSPNKNGVDIELDTQEQGKLSAEIISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNMCLKSVKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLLFNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHERHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWTNSGDLDHIADSAFVVAKLIGLTEPGKASKEMFGLKFAPWSS-RRSYSVKRSLISIL 998
G +EKI V+VRLRPLN KEIARNDV+DW+C+N +T+I+KNANL +P+RSMYP+AYTFD+VF DCST++VY EGAKEVALSV++GINS++FAYGQTSSGKTFTMTGITE+T+ DIY+YI KH ERE+HLKFSAMEIYNESVRDLLSTD TPLRLLDDPERGT+VEKLTEE LRDW+HVMELLS+C+AQRQIGET+LNETSSRSHQIIR+T+ESST E LS+DNSSTL ASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNA+TAIICTMSPAR HVEQSRNTLLFASCAKEV+TNAQVNV +SDKALVKHLQREL RLESEL GS++V S YSALL+EKELQI+K+E+E+ DLTLQRD A+SQ Q++LR IG+D + V N+YPHLRV SP+ + + A P S+D A +T+ +S +S Y HS SS+D + D R L TS+ S+ Q D+ + ++N TS+D+CKEVRCIE E+ N + ESS+ S + IS ++ + + KT +E+++ P EDR+V P + PSPEK SP + L K S+S T SRS + + + S+PR E + ++TP PNG E+ T +P + + S L+Y DV S GS+S N E++ Q+ L E + N ++E ++ E Q D+ +E + S K+VKDVGLDP+E D NWPSEFK+LQ++II LW CNVSLVHRT+FFLLF GDPTDSIYMEVELRRL FLK+ FS GN+T+E+GRTL+ ASSLK ++ ER LS QM K+L + +R+SLYLKW I LNSK+RR+QLA+ LWT++ D+DHI+DSAF+VAKL+G EPG+A KEMFGL FAP RRSYS+KRS+IS++
Sbjct: 2 GTIEEKILVSVRLRPLNDKEIARNDVSDWECVNENTIIFKNANLPVPERSMYPTAYTFDRVFRSDCSTKKVYEEGAKEVALSVISGINSTIFAYGQTSSGKTFTMTGITEHTLVDIYEYIGKHREREYHLKFSAMEIYNESVRDLLSTDTTPLRLLDDPERGTVVEKLTEEPLRDWNHVMELLSICDAQRQIGETALNETSSRSHQIIRLTIESSTLEFLSRDNSSTLAASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNAKTAIICTMSPARSHVEQSRNTLLFASCAKEVTTNAQVNVFVSDKALVKHLQRELARLESELRGPGSSFVVSHYSALLQEKELQIDKMEKEIIDLTLQRDVAQSQFQDLLRLIGDDRDSMIWVGLNNYPHLRVLRSPECENPILSTTPVADPRSLDAAVRTIDSSQYS---------YGHS--ESSSDDHCIPLPDFEETFMQNDTSPRLLVPTSKFIRSNSEQSWDEIEEQTNGTSDDLCKEVRCIEIEESRTNRNSESSRSSPEDNTEISELLMHGHED---------------------------------KTGQESISMPIKEDREVRYMAPLV----------VPSPEKSSP-WALAKYTCSSQSLKLTKSRSCNASLLTSPSTPRFDEVGNNENTPGPNGLEKEFTGRPENIRRKLSELSYCDDVERLSRKGSRSSVGNAAGTEVEAQKDETLPHETVPSLNAFAKEVEENAKVQLEKQVTDSPVHEAELKSKESEKTVKDVGLDPIEDDSMIVPNWPSEFKKLQREIIGLWDACNVSLVHRTYFFLLFKGDPTDSIYMEVELRRLSFLKDRFSHGNKTIEEGRTLSPASSLKTLQRERETLSRQMQKRLSEQDRESLYLKWGIKLNSKYRRLQLASRLWTDTQDMDHISDSAFIVAKLVGFEEPGQAPKEMFGLNFAPQPPRRRSYSLKRSVISLI 948
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AM84 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1082.01 bits (2797), Expect = 0.000e+0
Identity = 576/971 (59.32%), Postives = 694/971 (71.47%), Query Frame = 0
Match: A0A5B7AM84 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1082.01 bits (2797), Expect = 0.000e+0
Identity = 576/971 (59.32%), Postives = 694/971 (71.47%), Query Frame = 0
Query: 14 GGHDEKIFVTVRLRPLNRKEIARNDVADWDCINGDTVIYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGINSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEIYNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCEAQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQVNVIISDKALVKHLQRELTRLESEL-STGSTYVASKYSALLREKELQIEKLEREVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDAGYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHSFFPGSSED-LHPDPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETEDFSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSLLSKEETESIAPSLKTNREALTFPCSEDRQVALPYIEDSKINCIYDTPSPEKRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDDTPPNGCEEYHTQKPHASQSENSRLNYGSDVVISSSNGSQSPNKNGVDIELDTQEQGKLSA-EIISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNMCLKSVKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLLFNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHERHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWTNSGDLDHIADSAFVVAKLIGLTEPGKASKEMFGLKFAP 981
GG +EKIFV+VRLRP+N KE+ RN+V+DW+CIN +T+I++N NL +PDRSMYP+AYTFD+VF +CSTRQVY EGAKEVALSV++GINSS+FAYGQTSSGKT+TMTGITEYTI+DIYDYI+KHT+REF LK SAMEIYNESVRDLLS D+ PLRLLDDPERGTIVEKL+EE +R+WDH MELLS+CEAQRQIGETSLNETSSRSHQIIR+T+ESSTRE L KDNSSTL ASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH+PFRDSKLTRILQSSLGGN RTAIICTMSP R HVEQSRNTLLFASCAKEV+TNAQVNV++SDKALVKHLQREL RL+SEL S GST+ S +ALLR+K+LQIEKLE+E+ +LTLQRD A+SQ+Q++++ +G+D N YPHLRVQ SP++ V A S+DV +T TS SD ++ + P E+ LH + L ST + SD Q ++ +GK+N TSED+CK VRCIETED + H ES PS +E ++ P EDR+++ I+ + SPEK SP + ++ SRS T SRS +S + +LSSP + +TP NG E+ +P + S LNYG+DV S SQ+ + E GK S E + NT A LE +E E Q D+ A +T+ N+ LK+VKDVGLDP+E D S+WPSEFK+LQ++IIELWH CNVSLVHRT+FFLLF GDPTDSIYM+VELRRL FLK+TFSQGNQTVEDG T T+ SS+KA+R ER +LS +M K L + +R SL+LKW I LN+K+RR+QLAN LWTN+ D+DHI+DSAFVVAKL+G EPG+A KEMFGL FAP
Sbjct: 18 GGREEKIFVSVRLRPMNEKEVERNEVSDWECINDNTIIFRNGNLPVPDRSMYPTAYTFDRVFRSNCSTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMTGITEYTIADIYDYIEKHTKREFILKLSAMEIYNESVRDLLSADSIPLRLLDDPERGTIVEKLSEETVRNWDHAMELLSICEAQRQIGETSLNETSSRSHQIIRLTIESSTREFLGKDNSSTLAASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNGRTAIICTMSPTRSHVEQSRNTLLFASCAKEVTTNAQVNVVMSDKALVKHLQRELARLDSELRSPGSTFATSDSAALLRKKDLQIEKLEKEIVNLTLQRDVAQSQVQDLVQIVGDDRDSKIWAGLNQYPHLRVQKSPESENTVTERSALADSPSLDVHIRTFDTSQHSDGHYGSSCDEYFLQLPEFEENFLHNGTSPQLLISTDSV-RSDSGQGWEEIEGKTNRTSEDLCKVVRCIETEDSNTTRH-------------------------------------------------VESNPPS---PQELVSHPSKEDRELSF-------IHPPFVVLSPEKPSP-WPRTEDTFNSRSLKLTKSRSCKSSLMISLSSPWFDKVEKNKNTPANGFEKDFIGRPDGFPRKLSALNYGADVQRLSRKSSQTSIGSAT-----VAENGKSSTDESCTRINTSTAGLEEKAEHQLEKQAADSPAQKTELEDNIALKNVKDVGLDPIEDDSKILSDWPSEFKKLQREIIELWHACNVSLVHRTYFFLLFKGDPTDSIYMQVELRRLSFLKDTFSQGNQTVEDGWTQTLPSSMKALRRERELLSKEMRKTLSEHDRASLFLKWGIKLNTKNRRLQLANCLWTNTEDMDHISDSAFVVAKLVGFIEPGQAPKEMFGLNFAP 922
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ARF1 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1069.69 bits (2765), Expect = 0.000e+0
Identity = 585/1020 (57.35%), Postives = 716/1020 (70.20%), Query Frame = 0
Match: A0A5J5ARF1 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1069.69 bits (2765), Expect = 0.000e+0
Identity = 585/1020 (57.35%), Postives = 716/1020 (70.20%), Query Frame = 0
Query: 14 GGHDEKIFVTVRLRPLNRKEIARNDVADWDCINGDTVIYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGINSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEIYNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCEAQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQVNVIISDKALVKHLQRELTRLESEL-STGSTYVASKYSALLREKELQIEKLEREVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDAGYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHSF-----FPGSSEDLHPDPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETEDFSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSLLSKEETESIAPSLKTNREALTFPCSEDRQVALPYIEDSKINCIYDTPSPEKRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDDTPPNGCEEYHTQKPHASQSENSRLNYGSDVVISS-----------------SNGSQSP--------NKNGVDIELDTQEQGKLSA---EIISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNMCLKSVKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLLFNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHERHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWTNSGDLDHIADSAFVVAKLIGLTEPGKASKEMFGLKFAPWSSRR-SYSVKRSLISIL 998
G EKI V+VRLRPLN KE+ARNDV+DW+C+N +TVI++N NL +P++S+YP++YTFD+VF DCSTRQVY GAKEVALSV+ GINSS+FAYGQTSSGKT+TMTGITEYTI+DIYDYIQKH EREF LKFSAMEIYNESVRDLLS+D+ PLRLLDDPERGTIVEKLTEEILRDWDHVMELLS+CEAQRQIGETSLNETSSRSHQIIR+T+ESS RE L K NSS+L ASVNFVDLAGSERASQSLS GTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGN RTAIICTMSPAR HVEQSRNTLLFASCAKEV+TNAQVNV++SDKALVKHLQREL RLE+EL S GS + S +ALL+EK++QIEKLE+E+ DLT+QRD A+SQ+QE+L+ +DG +T V N YPHLRV+ SP++ + + HS++V +T+ T F D + + + + F G+ LH L ST+ + SD Q ++ + +N TSEDICKEVRCIE ED + H ES+ S + GISA V+ +G +T +E + P EDRQ+ I+ + SPEK SP F+ S S T SRS ++ ++ LSSP + ++TP N E +P + S LNYG+DV S + S+SP N + +E ++ Q + + E + NT +A LE +E E Q D+L + + + L KDVGLDP+E S+WPSEFKRLQ++IIELWH CNVSLVHRT+FFLLF GDPTDSIYM+VELRRL FLK+TFS+GNQTVE G TLT ASS+K++R ER MLS +M K+L + +R+SL+LKW I LN+K+RR+QLAN LWTN+ D+DHIA+SAFVVAKL+G EPG+A KEMFGL F+P +RR SYS++RS+IS+L
Sbjct: 16 GDRCEKICVSVRLRPLNEKEVARNDVSDWECVNYNTVIFRNGNLPVPEKSLYPTSYTFDRVFRWDCSTRQVYEAGAKEVALSVVGGINSSIFAYGQTSSGKTYTMTGITEYTIADIYDYIQKHAEREFILKFSAMEIYNESVRDLLSSDSNPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSICEAQRQIGETSLNETSSRSHQIIRVTIESSAREFLGKGNSSSLAASVNFVDLAGSERASQSLSDGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNGRTAIICTMSPARSHVEQSRNTLLFASCAKEVTTNAQVNVVMSDKALVKHLQRELARLEAELRSPGSAFAKSNCAALLQEKDVQIEKLEKEIIDLTVQRDVAQSQVQELLQITEDDGDSMTWVSLNQYPHLRVKRSPESENTITERSALSDSHSLNVHIRTVDT--FQDSDGHSGSSSDEHYQQLHEFEGNF--LHNGTSSGVLISTNSV-RSDSGQGWEEIEETTNRTSEDICKEVRCIEREDSNTTRHVESNPSSPKENTGISALKVVDDGN---------------------------------RTYQELVPNPSKEDRQL-------RSIHPPFVVLSPEKPSPWLQTEDTFN-SGSLKLTKSRSCKASLAINLSSPWFDKVEKNENTPVNEFENEFIGRPEGFPRKLSTLNYGADVQRLSRKASHFSIGSATVDEPEAQNSESPTDENWASINTSVAGLEEKSEHQCESKSPTDENWASINTSVAGLEEKAEHQCEKQVADSLVQKKELKEDAALNDFKDVGLDPIENYSKDLSDWPSEFKRLQREIIELWHACNVSLVHRTYFFLLFKGDPTDSIYMQVELRRLSFLKDTFSRGNQTVEHGWTLTHASSMKSLRRERGMLSKEMQKRLSEHDRESLFLKWGIGLNTKNRRLQLANCLWTNTEDMDHIANSAFVVAKLVGFIEPGQAPKEMFGLNFSPQITRRKSYSLRRSMISLL 989
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I2I0 (Kinesin motor domain-containing protein {ECO:0000259|PROSITE:PS50067})
HSP 1 Score: 1058.13 bits (2735), Expect = 0.000e+0
Identity = 569/1005 (56.62%), Postives = 710/1005 (70.65%), Query Frame = 0
Match: A0A7J7I2I0 (Kinesin motor domain-containing protein {ECO:0000259|PROSITE:PS50067})
HSP 1 Score: 1058.13 bits (2735), Expect = 0.000e+0
Identity = 569/1005 (56.62%), Postives = 710/1005 (70.65%), Query Frame = 0
Query: 10 VGMAGGH-DEKIFVTVRLRPLNRKEIARNDVADWDCINGDTVIYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGINSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEIYNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCEAQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQVNVIISDKALVKHLQRELTRLESEL-STGSTYVASKYSALLREKELQIEKLEREVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDAGYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHS----------FFPGSSEDLHP-DPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETEDFSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSLLSKEETESIAPSLKTNREALTFPCSEDRQVALPYIEDSKINCIYDTPSPEKRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDD--TPPNGCEEYHTQKPHASQSENSRLNYGSDVVISSSNGSQSPNKNGVDIELDTQEQGKLSAEIISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNMCLKSVKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLLFNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHERHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWTNSGDLDHIADSAFVVAKLIGLTEPGKASKEMFGLKFAPWS-SRRSYSVKRSLISIL 998
+G GG +EKIFV+VRLRPLN KEIARNDV DW+CIN DT+I+KN NL +PDRSMYP+AYTF+ G R+ Y +GAK VALSV ++++VFAYGQTSSGKTFTMTGITEY I+DIYDYI+KH EREF LKFSAMEIYNESVRDLLSTD+TPLRLLDDPERGT++EKLTEE LRDW+HVMELLS+CEAQRQIGET+LNETSSRSHQIIR+T+ESS ++ L KDN STL A+VNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH+PFRDSKLTRILQSSLG NA+TAIICTMSPAR HVEQSRNTLLFASCAKEV+TNAQVNV+ISDKALVKHLQREL RLE EL S G T+VAS YSALLREK LQIEKLE+E+ +LT+QRD A+SQ+Q++L+ +G++GH +TRV N+YP L+V+ SP+ V A PHS+++ + + S +S Y HS P E+ P D + L S S+ + D + K+N TSED+CKEVRCIE E+ ++++ PE + IS ++V NG+T ++E+VSP K D +L S P + ++ PS ++ L + S S+S T SRS ++ + + SP ++ D+ TPP G E+ T +P + LNYG+++ S GSQS + I+L+ + + I+ NTCI ++E +E E Q +E++ + LK+VKDVGLDP+E D S SNWPSEF RLQK+IIELW CNVSLVHRT+FFLLF GDPTDSIYMEVELRRL FLK+TFS+G++T+E+G+TL ASS+KA+ ER ML QM K+ + +R+SLYLKW I +NSK+RR QL + LWTN+ D+ H+ADSAF+V+KL G EPG+ KEMFGL FAP + SRRSYS+K+S++S+L
Sbjct: 1 MGTTGGSCEEKIFVSVRLRPLNEKEIARNDVCDWECINEDTIIFKNCNLPLPDRSMYPTAYTFE-YLGVTAPQRRCYEKGAKGVALSV---VSATVFAYGQTSSGKTFTMTGITEYAIADIYDYIEKHNEREFLLKFSAMEIYNESVRDLLSTDSTPLRLLDDPERGTVIEKLTEEPLRDWNHVMELLSICEAQRQIGETALNETSSRSHQIIRLTIESSAKQFLGKDNLSTLTAAVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGDNAKTAIICTMSPARSHVEQSRNTLLFASCAKEVTTNAQVNVVISDKALVKHLQRELARLEGELRSQGPTFVASHYSALLREKGLQIEKLEKEMINLTVQRDLAQSQVQDLLQLVGDEGHSMTRVGFNNYPCLQVRKSPECENPVPETSPLASPHSLNIGVRAVNRSLYS---------YGHSGRSSDDHYIQILPEFEENFVPNDTSPQLLVGASMFIRSNSGRSWDMIEEKTNGTSEDLCKEVRCIEAEESNRSSSPE-------QNTEISESMVAGNGDTTDQEFVSPPLKEDSML----------SYIPHFVAHS--------------------------HEKPS------TWPLTEYMSGSQSLKLTKSRSCKASLMTSPYSPWFEKEETNDNEHTPPTGFEKEFTGRPEDIRRRLYELNYGANIERLSRKGSQSSIGSVAAIDLEAHRGRTSTDDNITSVNTCIVRMEEKAELQQEKQ-----VHESEPKAKESLKNVKDVGLDPIEDDSKSLSNWPSEFNRLQKEIIELWDVCNVSLVHRTYFFLLFKGDPTDSIYMEVELRRLSFLKDTFSRGSKTIEEGQTLLPASSMKALCREREMLRRQMKKRFSEQDRESLYLKWGIKINSKNRRSQLTSRLWTNTEDMHHVADSAFIVSKLAGNIEPGRVPKEMFGLNFAPQTPSRRSYSLKQSILSLL 938
BLAST of DCAR_017343 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RIQ9 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1057.74 bits (2734), Expect = 0.000e+0
Identity = 572/991 (57.72%), Postives = 715/991 (72.15%), Query Frame = 0
Match: A0A2R6RIQ9 (Kinesin-like protein {ECO:0000256|RuleBase:RU000394})
HSP 1 Score: 1057.74 bits (2734), Expect = 0.000e+0
Identity = 572/991 (57.72%), Postives = 715/991 (72.15%), Query Frame = 0
Query: 15 GHDEKIFVTVRLRPLNRKEIARNDVADWDCINGDTVIYKNANLSMPDRSMYPSAYTFDKVFGCDCSTRQVYMEGAKEVALSVLTGINSSVFAYGQTSSGKTFTMTGITEYTISDIYDYIQKHTEREFHLKFSAMEIYNESVRDLLSTDNTPLRLLDDPERGTIVEKLTEEILRDWDHVMELLSLCEAQRQIGETSLNETSSRSHQIIRMTVESSTRELLSKDNSSTLVASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARVHVEQSRNTLLFASCAKEVSTNAQVNVIISDKALVKHLQRELTRLESEL-STGSTYVASKYSALLREKELQIEKLEREVKDLTLQRDSAKSQIQEMLRCIGNDGHPLTRVVHNHYPHLRVQDSPDA-GYRVENNYLTAVPHSMDVASKTLCTSPFSDRQDVNALNYNHSFFPGSSEDLHP-DPCRRPLTSTSQISESDLSQDLDDYDGKSNCTSEDICKEVRCIETED-FSKNNHPESSQLSNAHDIGISATIVLKNGETANEEWVSPMSKSDEVLVSLLSKEETESIAPSLKTNREALTFPCSEDRQVALPYIEDSKINCIYDTPSPEKRSPSYDLVKEFSRSRSPSSTTSRSYESGISATLSSPRLQEAVHLDDTPPNGCEEYHTQKPHASQSENSRLNYGSDVVISSSNGSQSPNKNGVDIELDTQEQGKLSAE-IISDGNTCIAKLETMSEPHDEHQGFDTLANETKTMSNM-CLKSVKDVGLDPMEYDLSSPSNWPSEFKRLQKDIIELWHTCNVSLVHRTHFFLLFNGDPTDSIYMEVELRRLFFLKETFSQGNQTVEDGRTLTIASSLKAIRHERHMLSIQMHKQLPQIERKSLYLKWNIPLNSKHRRVQLANLLWTNSGDLDHIADSAFVVAKLIGLTEPGKASKEMFGLKFAPW-SSRRSYSVKRSLISIL 998
G EK+ V+VRLRPLN KEIARNDV+DW+C+N +++I+KN +L +P+RSMYP+ YTFD+VF + ST+QVY EGAKEVALSV++GINS+VFAYGQTSSGKT+TMTGITE+T++DIYDY++KH ERE++LKFSAMEIYNESVRDLLSTD TPLRLLDDPERGT+VEKLTEE + DW+H+MELLS CEAQRQIGET+LNETSSRSHQIIR+T+ESS RE LSKD SSTL ASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGR GHIPFRDSKLTRILQSSLGGNARTAIICTMSPAR H+EQSRNTLLFASCAKEV+TNAQVNV +SDKALVKHLQREL RLE+EL S ST+ S YSALLREK+L IEKLE+E+ DL LQRD A+SQIQ++LR +G+D + V N+YPHLRVQ SP+ + + L A PHS+DV + +SD ++ + ++ P +D D + L +TS+ S+ + + K+N TSED+CKEVRCIETE+ S + H S++ + IS + NG+ A +E+VS SLK +RE P ++ P PEK S ++ L K +++ T SRS ++ ++ + SS + + ++TPPNG E+ +P + + + N+G+DV SQS + IEL+ + + L+ + I N +++LE +E +E D + M LK+VKDVGLDP+E D +S SNWP+EFKRLQ +IIELW CNVSLVHRT+FFLLF G+PTDSIYMEVELRRL FLK+TFS+G++T+E+GRTL+ ASS KA+ ER MLS QM K+L + ER+SL+LKW I LNSK+RR+QLA LWT++ D+DHIADSAF+VAKL+ EPGKA KEMFGL FAP RRSYS+KRS+IS+L
Sbjct: 2 GTTEKLLVSVRLRPLNEKEIARNDVSDWECLNENSIIFKNNHLPVPERSMYPTVYTFDRVFRSNSSTKQVYEEGAKEVALSVVSGINSTVFAYGQTSSGKTYTMTGITEFTVADIYDYMEKHNEREYNLKFSAMEIYNESVRDLLSTDCTPLRLLDDPERGTVVEKLTEEPVGDWNHLMELLSFCEAQRQIGETALNETSSRSHQIIRLTIESSAREFLSKD-SSTLAASVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRIGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARSHIEQSRNTLLFASCAKEVTTNAQVNVFMSDKALVKHLQRELARLETELRSPVSTFPVSHYSALLREKDLHIEKLEKEIIDLILQRDVAQSQIQDLLRLVGDDCDSMKSVGLNNYPHLRVQRSPECENPKSGTSPLVADPHSLDVGVISFDRYLYSDGHSQSSSDDHYIQLPDFEQDFQQNDTSLQLLVNTSKFITSNSVRSWGGIEEKTNGTSEDLCKEVRCIETEESTSTDQHSISNRSFAEENAEISELTMDGNGDIAGQEYVS----------------------LSLKEDRELSYVP-------------------LFVAP-PEKPS-AWPLTKCMQSTQNLKLTKSRSCKASLTTSPSSQWFENVENNENTPPNGSEKDFPGRPEGIRRKLNEFNHGADVERLLRKDSQSSMGSAAAIELEAENEKTLTDDNITKRTNARVSELEDKAELQEEKPADDDGPVHEAVLKVMESLKNVKDVGLDPIEGDSTSLSNWPTEFKRLQTEIIELWDDCNVSLVHRTYFFLLFKGEPTDSIYMEVELRRLSFLKDTFSRGSKTIEEGRTLSPASSKKALLREREMLSKQMQKRLSEQERESLFLKWGIKLNSKNRRLQLAFRLWTDTEDMDHIADSAFIVAKLVRFIEPGKAPKEMFGLNFAPQPPRRRSYSLKRSVISLL 948
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7ARJ5 | E-Value: 0.000e+0, PID: 59.05 | Kinesin-like protein {ECO:0000256|RuleBase:RU00039... [more] |
| A0A5B7AP28 | E-Value: 0.000e+0, PID: 59.05 | Kinesin-like protein {ECO:0000256|RuleBase:RU00039... [more] |
| A0A5B7APJ0 | E-Value: 0.000e+0, PID: 58.91 | Kinesin-like protein {ECO:0000256|RuleBase:RU00039... [more] |
| A0A5B7AN29 | E-Value: 0.000e+0, PID: 58.93 | Kinesin-like protein {ECO:0000256|RuleBase:RU00039... [more] |
| A0A5B7ANT8 | E-Value: 0.000e+0, PID: 59.88 | Kinesin-like protein {ECO:0000256|RuleBase:RU00039... [more] |
| A0A834LE64 | E-Value: 0.000e+0, PID: 58.58 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7130... [more] |
| A0A5B7AM84 | E-Value: 0.000e+0, PID: 59.32 | Kinesin-like protein {ECO:0000256|RuleBase:RU00039... [more] |
| A0A5J5ARF1 | E-Value: 0.000e+0, PID: 57.35 | Kinesin-like protein {ECO:0000256|RuleBase:RU00039... [more] |
| A0A7J7I2I0 | E-Value: 0.000e+0, PID: 56.62 | Kinesin motor domain-containing protein {ECO:00002... [more] |
| A0A2R6RIQ9 | E-Value: 0.000e+0, PID: 57.72 | Kinesin-like protein {ECO:0000256|RuleBase:RU00039... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |