Resource Type:
Polypeptide
Name:
DCAR_018815
Identifier:
DCAR_018815.mRNA-protein
Sequence:
MDGQDSISDQPIVSPPAPPAQPEPESTQPPAPVPEPGEKRKQPEPDSAPT
PPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTW
DPTSERGKKMKVENGESVEVKRGTDEVSITEAIGEDCCSDNVLEKCLINL
PMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELN
GKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNTSENSDAPKSSIGVD
NTDSNDDNMTVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKK
LTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEF
SVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFL
QHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQV
STAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAP
ADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVN
TLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMN
ASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQI
DDVTVHGEVTHTENATDTKENLIIELENCDGAPKCDTNGGQKSDSQQSCS
SATAKPVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPES
LVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQP
IKAMAVDLFPHTPHCELVMLLER*
Sequence Length:
824
Sequence Checksum:
0ec20c09536886bf9fdfd2f21c2e9a22
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_018815, derives from mRNA, DCAR_018815. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C2I9 ((Putative zinc finger CCCH domain-containing protein 24 isoform X2 {ECO:0000313|EMBL:MPA75369.1}) (2.1.1.- {ECO:0000313|EMBL:MPA75369.1}) (Fragment))
HSP 1 Score: 1150.96 bits (2976), Expect = 0.000e+0
Identity = 565/817 (69.16%), Postives = 664/817 (81.27%), Query Frame = 0
Match: A0A5B7C2I9 ((Putative zinc finger CCCH domain-containing protein 24 isoform X2 {ECO:0000313|EMBL:MPA75369.1}) (2.1.1.- {ECO:0000313|EMBL:MPA75369.1}) (Fragment))
HSP 1 Score: 1150.96 bits (2976), Expect = 0.000e+0
Identity = 565/817 (69.16%), Postives = 664/817 (81.27%), Query Frame = 0
Query: 23 EPESTQPPAPVPEPGEKRKQPEPDSAPTPPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTWDPTSERGKKM-KVENGESVEVKRGTDEVSITEAIGEDCCSDNVLEKCLINLPMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELNGKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNT---SENSDAPKSSI---GVDNTDSNDDNMTVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKKLTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEFSVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFLQHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQVSTAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAPADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQIDD------VTVHGEVTHTENATDTKENLIIELENCDGAPKCDTNGGQKSDS--QQSCSSATA-KPVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 823
EP +TQ + E GEKRK+ +P T P ++ PLWKTSLCSYFRR+ G CSHG+ CRYAH EEELRQRPDN+WDPTSER KK+ K ENG+ R D V +T+A+ D SD+ L KCL+NLPM+W++DNLRSFL + G+ +KSAKK+KGM++GFV+FE+AEQVK A+EEL+G+S+GNK+LK+ D PR++EK+ + PQS Q T + SD+ + S+ G+++ D+ DD+ + +V K+RSARD VTPLAHM Y DQLEHKK+SL Q+LKKLTRNARKACP GVSLPEWIL SREIGGL CKLEG+VESP+V+GYRNKCEFSVGYS+Q K TVGF LGNFREGV AVEEP +CPNVS+IACKYAAIFQEFLQHS LPIWNRLNNTGFWRQLTVREGR PG++ +VE+ EA I+EV+LMVQV + GFDDG++N EFE+M AFA G+S+++P LPLTAL++QDH GISN APADAPLRSL IP +S++ + +V+EARIHDYISNLQFCIS TAFFQVNT+AAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMV+GIEMNASAVSDA+RNAEINGIKNCRFVC+KAED +GSLLKEYL + +K + P + + TV + T TEN D + + +E+EN GA NG Q+ ++ Q+SCS +Q FKNVVAIVDPPRVGLHPTVIKALRTHP LRRLVYISCNPESLVANAIELCTPS DKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER
Sbjct: 58 EPSNTQSTDGI-ESGEKRKRVDP----TEPSENEALRPLWKTSLCSYFRRSNGACSHGDGCRYAHGEEELRQRPDNSWDPTSERAKKLLKSENGDKDSNSREEDGVLMTDALAGDS-SDSALAKCLVNLPMKWNTDNLRSFLAEQGIIYKSAKKKKGMIIGFVNFESAEQVKRAMEELDGRSVGNKNLKVADVLPRSFEKKTNLAMPSPQSAQQTVKPASASDSVEVSVSLNGIEDGDTMDDSSMPDGSVLKARSARDVVTPLAHMPYADQLEHKKNSLMQILKKLTRNARKACPTGVSLPEWILKSREIGGLPCKLEGVVESPIVNGYRNKCEFSVGYSVQGKPTVGFMLGNFREGVTAVEEPADCPNVSRIACKYAAIFQEFLQHSGLPIWNRLNNTGFWRQLTVREGRAPGEAAKVENLEASISEVMLMVQVCSVGFDDGIINSEFERMAQAFAMGSSSDSPCLPLTALVVQDHKGISNAAPADAPLRSLPIPKAESDSGLEAATNVIEARIHDYISNLQFCISPTAFFQVNTVAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDALRNAEINGIKNCRFVCAKAEDVMGSLLKEYLNLPKKQDENPNVSESNGEEISTVVEKETSTENLPDPEGSATLEIENGKGAFVHSKNGSQELENQLQKSCSPENGTNSMQQFKNVVAIVDPPRVGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSADKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 868
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BLN3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8544035.1}))
HSP 1 Score: 1145.57 bits (2962), Expect = 0.000e+0
Identity = 571/840 (67.98%), Postives = 667/840 (79.40%), Query Frame = 0
Match: A0A5J5BLN3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8544035.1}))
HSP 1 Score: 1145.57 bits (2962), Expect = 0.000e+0
Identity = 571/840 (67.98%), Postives = 667/840 (79.40%), Query Frame = 0
Query: 1 MDGQDSISDQPIVSPP-APPAQPEPESTQPPAPVPEPGEKRKQPEPDSAPTPPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTWDPTSERGKKM-KVENGESVEVKRGTDE-VSITEAIGEDCCSDNVLEKCLINLPMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELNGKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNT-----SENSDAPKSSIGVDNTDSNDDNMTVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKKLTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEFSVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFLQHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQVSTAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAPADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQIDD------VTVHGEVTHTENATDTKENLIIELENCDGAPKCDTNGGQKSDS--QQSCSSATA-KPVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 823
M+G DS +P A P EP Q + E EKRK+ +P P+ S HPLWKTSLCSYFRR+ G CSHGE CRYAH EEELR RPDN+WDPTSER KK+ K E+G+ E D+ V +T+A+ +D SD+ L KCL+NLPMRW++DNLRSFL + G+ +KSAKK+KGM++GF++FE+AEQVK A+EEL+GKS+GNK+LK+ D PR++EK+ + PQSTQ T + +S SS G+++ D+ +D++ + +V K+RSARD VTPLAHM Y DQLEHKK+SL Q LK+LTRNARKACP GVSLPEWIL SREIGGL CKLEG++ESP+V+GYRNKCEFSVGYS+Q K TVGF LGNFREGV AVEEP++CPNVS+IACKYAAIFQEFLQHS LPIWNRLNNTGFWRQLTVREGR PG++ EVE+ EA ++EV+LMVQV +AGFDDG+VN EFEKMT +FA GAS+++P LPLTAL++QDH GISN APADAPLRSL IP +S++ + +V+EARIHDYISNLQF IS TAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDA+RNAEINGI+NC FVC+KAED +GSLLKEYL + +K + P + + TV E T EN D + + +E+EN G N Q+ S Q+SCS +Q FKNVVAIVDPPRVGLHPTVIKALRTHP LRRLVYISCNPESLVANAIELCTPS DKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER
Sbjct: 24 MNGHDSTESPHQTTPQEAEPGNKEPSDAQSTDNI-ESREKRKRVDPPEPSESAEPKSSLHPLWKTSLCSYFRRSDGSCSHGEGCRYAHGEEELRPRPDNSWDPTSERAKKLLKSEDGDKSEGSNSRDDDVLMTDALADDS-SDSALAKCLVNLPMRWNADNLRSFLAEQGILYKSAKKKKGMIIGFLNFESAEQVKRAMEELDGKSVGNKNLKVADVVPRSFEKKTLA-MPPPQSTQQTVKPASASDSVVSMSSNGIEDGDTMNDSLMPDGSVLKARSARDVVTPLAHMPYADQLEHKKNSLMQSLKRLTRNARKACPTGVSLPEWILKSREIGGLPCKLEGVIESPIVNGYRNKCEFSVGYSVQGKPTVGFMLGNFREGVTAVEEPVDCPNVSRIACKYAAIFQEFLQHSGLPIWNRLNNTGFWRQLTVREGRAPGEAAEVENLEASVSEVMLMVQVCSAGFDDGIVNSEFEKMTQSFAMGASSDSPCLPLTALVVQDHKGISNAAPADAPLRSLPIPKAESDSGLEATNNVMEARIHDYISNLQFRISPTAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDALRNAEINGIENCIFVCAKAEDVMGSLLKEYLNLPKKQDENPNVSESNGEKISTVVDEETPMENLPDPEGSTSLEIENGKGTSAHSKNDNQELQSHLQKSCSPENGTNSMQQFKNVVAIVDPPRVGLHPTVIKALRTHPGLRRLVYISCNPESLVANAIELCTPSVDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 860
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HBI1 ((Zinc finger (CCCH-type) family protein {ECO:0000313|EMBL:GFZ20467.1}))
HSP 1 Score: 1112.06 bits (2875), Expect = 0.000e+0
Identity = 552/828 (66.67%), Postives = 657/828 (79.35%), Query Frame = 0
Match: A0A7J0HBI1 ((Zinc finger (CCCH-type) family protein {ECO:0000313|EMBL:GFZ20467.1}))
HSP 1 Score: 1112.06 bits (2875), Expect = 0.000e+0
Identity = 552/828 (66.67%), Postives = 657/828 (79.35%), Query Frame = 0
Query: 18 PPAQPEPESTQPPAPVP------EPGEKRKQPEPDSAPTPPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTWDPTSERGKKM-KVENGESVEVKRGTDEVSITEAIGEDCCSDNVLEKCLINLPMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELNGKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNT------SENSDAPKSSIGVDNTDSNDDNMTVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKKLTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEFSVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFLQHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQVSTAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAPADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQIDDVTVHGEVTHTE------NATDTKENLIIELENCDGAPKC--DTNGGQKSDSQQSCSSATA-KPVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 823
PP QP P+ ++P EPGEKRK+ +P T E++ HPLWKTSLCSYFRR+ G CSHG+TCRYAH E ELR RPD++WDPTSE+ KK+ K E+GE EV +T+A+ D SD L KCL+NLPM+WS+D LR+FL++ G+ +KSAKK+KGM VGFV+FE+AEQVK A+EEL+G+S+GNK+LK+ D PR++EK+ + PQS+QNT +N++ S+ ++ D+ DD++T + SK+RSARD VTPLA+M Y+DQLE KK++L Q LK+LT+NARKACPNGVSLPEWIL SREIGGL CK EGI+ESPLV+GYRNKCEFS+GYS+Q K TVGF LGNFREGV AVEEP +CPN+S+IACKYAA FQ+FLQHS+LPIWNRLNNTGFWRQLTVREGR PG+ E + E +I+EV+L+VQV T GFDDG+VN EFEKM AF+ GASA++ PLPLTALL+QDH GISN APADAPLRS+ I +S +R + D EARI+DYI NL+FCIS TAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAH VGMVVGIEMNASAVSDA+RNAEING+KNCRFVC+KAED +GSLLKEYL + QK ++ + + + E T+TE N D++++ +ELEN G C D++ G + Q SC+S + VQ FKNVVAIVDPPRVGLHPTVIKALRTHP LRRLVYISCNPESLVANAIELCTPS +KTEKGNKNNRGWRNMSSAGLARHRAKSMP SEPF+PIKAMAVDLFPHTPHCELVMLLER
Sbjct: 27 PPHQPAPDESKPSNAQSQSTDGVEPGEKRKRADP----TDDAVEQALHPLWKTSLCSYFRRSNGACSHGDTCRYAHGEAELRPRPDSSWDPTSEQAKKLLKAESGEKSRPIEVEAEVLMTDALDGDS-SDPDLSKCLLNLPMKWSADKLRNFLSEQGIVYKSAKKKKGMTVGFVNFESAEQVKRAIEELDGRSVGNKNLKVADVVPRSFEKKTKLAVPAPQSSQNTIKPPPICDNNEVSASTNACEDGDTMDDDLTPVCSASKARSARDVVTPLAYMPYIDQLESKKNNLMQTLKRLTKNARKACPNGVSLPEWILKSREIGGLPCKFEGILESPLVNGYRNKCEFSIGYSIQGKPTVGFMLGNFREGVTAVEEPTDCPNISRIACKYAAFFQDFLQHSDLPIWNRLNNTGFWRQLTVREGRTPGKVAEGGNYEVNISEVMLIVQVCTVGFDDGLVNSEFEKMAQAFSVGASADS-PLPLTALLVQDHKGISNAAPADAPLRSIPISKAESHSRHETGTDGAEARINDYIDNLRFCISPTAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHCVGMVVGIEMNASAVSDAVRNAEINGVKNCRFVCAKAEDVMGSLLKEYLNLIQKQDEIANSSE-SNNEEPTNTEAKGTSDNIPDSEDSKCLELENSKGTSGCLDDSSKGLDNQPQNSCTSESGTTSVQPFKNVVAIVDPPRVGLHPTVIKALRTHPCLRRLVYISCNPESLVANAIELCTPSANKTEKGNKNNRGWRNMSSAGLARHRAKSMPPSEPFRPIKAMAVDLFPHTPHCELVMLLER 847
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P7M1 ((Zinc finger CCCH domain-containing protein {ECO:0000313|EMBL:PSR86603.1}))
HSP 1 Score: 1109.36 bits (2868), Expect = 0.000e+0
Identity = 554/831 (66.67%), Postives = 658/831 (79.18%), Query Frame = 0
Match: A0A2R6P7M1 ((Zinc finger CCCH domain-containing protein {ECO:0000313|EMBL:PSR86603.1}))
HSP 1 Score: 1109.36 bits (2868), Expect = 0.000e+0
Identity = 554/831 (66.67%), Postives = 658/831 (79.18%), Query Frame = 0
Query: 18 PPAQPEPESTQPPAPVP------EPGEKRKQPEPDSAPTPPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTWDPTSERGKKM-KVENGES---VEVKRGTDEVSITEAIGEDCCSDNVLEKCLINLPMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELNGKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNT------SENSDAPKSSIGVDNTDSNDDNMTVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKKLTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEFSVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFLQHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQVSTAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAPADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQIDDVTVHGEVTHTE------NATDTKENLIIELENCDGAPKC--DTNGGQKSDSQQSCSSATA-KPVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 823
PP P P+ ++P EPGEKRK+ +P T E++ HPLWKTSLCSYFRR+ G CSHG+TCRYAH E ELR RPD++WDPTSE+ KK+ K ENGE +EVK EV +T+A+ D SD L KCL+NLPM+WS+D LR+FL++ G+ +KSAKK+KGM VGFV+FE+AEQVK A+EEL+G+S+GNK+LK+ D PR++EK+ + PQS+QNT +N++ S+ ++ D+ DD++T + SK+RSARD VTPLA+M Y+DQLE KK++L Q LK+LT+NARKACPNGVSLPEWIL SREIGGL CK EGI+ESPLV+GYRNKCEFS+GYS+Q K TVGF LGNFREGV AVEEP NCPN+S+IACKYAA FQ+FLQHS+LPIWNRLNNTGFWRQLTVREGR PG+ E + E +I+EV+L+VQV T GFDDG+VN EFEKM AF+ GASA++ PLPLTALL+QDH GISN APADAPLRS+ I +S + + D EARI+DYI NL+FCIS TAFFQVN LAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDA+RNAEIN +KNCRFVC+KAED +GSLLKEYL + QK ++ + + + E T+TE N D++++ +ELEN G C D++ G + Q SC+S + VQ FKNVVAIVDPPRVGLHP VIKALRTHPHLRRLVYISCNPESLVANAIELCTPS +KTEKGNKNNRGWRNMSSAGLARHRAKSMP SEPF+PIKAMAVDLFPHTPHCELVMLLER
Sbjct: 27 PPHHPAPDESKPSNAQSQSTDGVEPGEKRKRADP----TDDDVEQALHPLWKTSLCSYFRRSNGACSHGDTCRYAHGEAELRPRPDSSWDPTSEQAKKLLKAENGEKSRPIEVKA---EVLMTDALDGDS-SDPDLSKCLLNLPMKWSADKLRNFLSEQGIVYKSAKKKKGMTVGFVNFESAEQVKRAIEELDGRSVGNKNLKVADVVPRSFEKKTKLAVPAPQSSQNTIKPPPICDNNEVSASTNVCEDGDTMDDDLTPVCSASKARSARDVVTPLAYMPYIDQLESKKNNLMQTLKRLTKNARKACPNGVSLPEWILKSREIGGLPCKFEGILESPLVNGYRNKCEFSIGYSIQGKPTVGFMLGNFREGVTAVEEPTNCPNISRIACKYAAFFQDFLQHSDLPIWNRLNNTGFWRQLTVREGRTPGKVAEGGNYEVNISEVMLIVQVCTVGFDDGLVNSEFEKMAQAFSVGASADS-PLPLTALLVQDHKGISNAAPADAPLRSIPISKAESHSGHETGTDGAEARINDYIDNLRFCISPTAFFQVNALAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAVRNAEINDVKNCRFVCAKAEDVMGSLLKEYLNLIQKQDEIANSSE-SNNEEPTNTEAKGTSDNIPDSEDSKCLELENSKGTSGCLDDSSKGLDNQPQNSCTSESGTTSVQPFKNVVAIVDPPRVGLHPIVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSANKTEKGNKNNRGWRNMSSAGLARHRAKSMPPSEPFRPIKAMAVDLFPHTPHCELVMLLER 847
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6GU02 ((Uncharacterized protein {ECO:0000313|EMBL:CCB43666.1}))
HSP 1 Score: 1090.1 bits (2818), Expect = 0.000e+0
Identity = 553/829 (66.71%), Postives = 643/829 (77.56%), Query Frame = 0
Match: F6GU02 ((Uncharacterized protein {ECO:0000313|EMBL:CCB43666.1}))
HSP 1 Score: 1090.1 bits (2818), Expect = 0.000e+0
Identity = 553/829 (66.71%), Postives = 643/829 (77.56%), Query Frame = 0
Query: 16 PAPPAQP-EPESTQPPAP----VPEPGEKRKQPEPDSAPTPPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTWDPTSERGKKM-KVENGESVEVKRGTDEVSITEAIGEDCCSDNVLEKCLINLPMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELNGKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNTSE------NSDAPKSSIGVDNTDSNDDNMTVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKKLTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEFSVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFLQHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQVSTAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAPADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVP---QIDDVTVHGEVTHTE---NATDTKENLIIELENCDGAPKCDTNGGQKSDSQ--QSCSSATAK-PVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 823
P PP + E +P P V E GEKRK+ +P + + +HPLWKTSLCSYFR G CSHG+ CRYAH EEELRQRPDNTWDPTSER KK+ K E+GE + K D+V +TEA+ +D C+D L KCL++LP +W SD LR FL GV +KSAKK+KGM++GFV+FE+AEQ+K+A+EEL GKSIGNK+LK+ D PR++EK+ + L QSTQ E ++D SS G+++ D+ D+ +S V K+RSARD TPLAH++Y DQLEHKK+SL Q LKKLTRNARKACPNGVSLPEWIL SREIGGL CK EGI+ESPLV+GYRNKCEFSVGYSLQ K TVGF LGNFREG+ AVEEP +CPNVS IA +YA IFQEFLQHS LP+WNR NNTGFWRQLTVREGRKPG++ E + SE I+EVL+MVQV + G DD ++NGEFE++ AF GA+A++ PLPLTAL++QDH GISNVA ADAPLR L IP E S++ D +VEARIHDYISNL+FCIS TAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFD+CCGTGTIGLTLAHRVGMVVGIEMNASAVSDA RNAE+NGIKNCRFVC+KAED +GSLLKEYL + Q+ +VP Q DD + E NA + + + ELE+ GA C N ++S ++ CSS V+ FKN VAIVDPPR GLHP VIKALRTH LRRLVYISCNPESLVANAIELCTPS DKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQP+KAMAVDLFPHTPHCE+VMLLER
Sbjct: 25 PCPPQEHVGDEELKPSVPQSTDVIESGEKRKRSDPADS------DNCRHPLWKTSLCSYFRSHSGSCSHGDACRYAHGEEELRQRPDNTWDPTSERAKKLLKSESGEKCDSKE--DDVMMTEAVVDDDCADPGLSKCLLHLPPKWHSDQLRDFLGQQGVIYKSAKKKKGMMIGFVTFESAEQLKNAMEELEGKSIGNKNLKVGDILPRSFEKKNNSALPLHQSTQKNMETALGGDDTDVSMSSFGLEDGDAVCDSSASDS-VLKARSARDVATPLAHLTYTDQLEHKKNSLMQTLKKLTRNARKACPNGVSLPEWILKSREIGGLPCKFEGILESPLVNGYRNKCEFSVGYSLQGKPTVGFMLGNFREGITAVEEPADCPNVSMIARRYATIFQEFLQHSGLPLWNRFNNTGFWRQLTVREGRKPGKAAEAKISEPSISEVLVMVQVCSKGIDDEILNGEFERLAQAFTMGATASS-PLPLTALVVQDHKGISNVASADAPLRPLPIPKEGSDSGPDAGGQIVEARIHDYISNLRFCISPTAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDVCCGTGTIGLTLAHRVGMVVGIEMNASAVSDAQRNAELNGIKNCRFVCAKAEDVMGSLLKEYLSVPQRQNEVPDFSQSDDKVISNSEDKMESINNALNPEGSSSHELESGKGASGCLENVQRESKNELHNGCSSKDGNISVRQFKNFVAIVDPPRGGLHPIVIKALRTHACLRRLVYISCNPESLVANAIELCTPSADKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPVKAMAVDLFPHTPHCEMVMLLER 843
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834CZG1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5470690.1}))
HSP 1 Score: 1066.6 bits (2757), Expect = 0.000e+0
Identity = 546/859 (63.56%), Postives = 642/859 (74.74%), Query Frame = 0
Match: A0A834CZG1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5470690.1}))
HSP 1 Score: 1066.6 bits (2757), Expect = 0.000e+0
Identity = 546/859 (63.56%), Postives = 642/859 (74.74%), Query Frame = 0
Query: 1 MDGQDSISDQPIVSPPAPPAQP--EPESTQPPAPVPEP---GEKRKQPEPDSAPTPPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTWDPTSERGKKMKVENGESVEVKRGTDEVSITEAI-------------GEDCCSDNVLEKCLINLPMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELNGKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNTSE------NSDAPKSSIGVDNTDSNDDNM---TVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKKLTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEFSVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFLQHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQVSTAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAPADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQIDD------VTVHGEVTHTENATDTKENLIIELENCDGAPKCDTNGGQKSDSQQ---SCSSATAKPVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 823
M+G+DS+ + P PP Q + S A + GEKRK+ +P PP + S HPLWKTSLCSYFRR G CSHG++CRYAH EEELR RPDNTWDPTSER KK + + ES +R ++V +TEA+ D C D+ L KCL++LP +W S+NL FL + GV FKS KK+KGM VGFVSFE+A Q+K+A EEL GKSIGNK+LK+ D PR++EK+ ++LP Q T E N P SS G+++ D+N+D+ TV+ +VS++R ARD VTPLAHMSYVDQLEHK++SL Q+LK+LTRNARKACPNGVSLPEWIL SREIGGL C+LEGI+ESPLV+GYRNKCEFS GYSLQ K TVGF LGNFREGV AVEEP++CPNVS+IACKYA+IFQEFLQ+S LPIWNR NNTGFWRQLTVREGR PG+ +VE+S+A I+EV+L+VQV + GFDD ++ GEF+++ AF GA+ N+P LPLTAL++QDH GISNVAP DAPLR L IP + + D D VEARIHD I +L FCIS TAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFD+CCGTGTIGLTLAHRVGMV+GIEMNASAVSDA RNAEINGIKNC+FVC+KAED +GSLLKEYL + QK ++ + T + T +N + +EN + N A C NGGQ++ QQ S V FKNVVAIVDPPRVGLHP VIKALRTHP L RLVYISCNPESLVANAIELCTPS K EKGNKNNRGWR MSSAGLARHRAKSMP SEPF+P+KAMAVDLFPHT HCE+VMLLER
Sbjct: 23 MNGEDSVPE-----PSQPPQQDLDQDHSNSQSASADDTVSVGEKRKREDP-----PPSDQSSLHPLWKTSLCSYFRRNSGSCSHGDSCRYAHGEEELRPRPDNTWDPTSERAKKA-LRSEESERQERPEEDVMMTEAVVDEDDDDKDDDDKDNDGCLDSELRKCLVHLPRKWHSENLMKFLGEEGVPFKSVKKKKGMTVGFVSFESAVQLKTAQEELKGKSIGNKNLKVADIIPRSFEKKIRSAVALPIRDQQTREPALDGDNVGVPISSNGIEDGDTNNDDKNCSTVDGSVSRARRARDVVTPLAHMSYVDQLEHKRNSLMQILKRLTRNARKACPNGVSLPEWILKSREIGGLPCELEGIIESPLVNGYRNKCEFSAGYSLQGKPTVGFMLGNFREGVTAVEEPVDCPNVSRIACKYASIFQEFLQNSGLPIWNRFNNTGFWRQLTVREGRAPGK-VDVENSDASISEVILVVQVCSVGFDDAVITGEFKRLAEAFTEGAAENSPSLPLTALVVQDHQGISNVAPTDAPLRQLPIP-KAAGPEPDATADPVEARIHDSIGDLHFCISPTAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAYRNAEINGIKNCKFVCAKAEDVMGSLLKEYLNLPQKSDEISNTSESSDKEIATPVEKDTSIDNVLEPEENSSHDHVNNKSASDCLENGGQETGIQQQGNGTSECGNTSVPQFKNVVAIVDPPRVGLHPIVIKALRTHPRLHRLVYISCNPESLVANAIELCTPSPQKIEKGNKNNRGWRGMSSAGLARHRAKSMPISEPFRPVKAMAVDLFPHTVHCEMVMLLER 868
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4DW00 ((zinc finger CCCH domain-containing protein 24-like {ECO:0000313|RefSeq:XP_018811322.1}))
HSP 1 Score: 1066.6 bits (2757), Expect = 0.000e+0
Identity = 550/865 (63.58%), Postives = 645/865 (74.57%), Query Frame = 0
Match: A0A2I4DW00 ((zinc finger CCCH domain-containing protein 24-like {ECO:0000313|RefSeq:XP_018811322.1}))
HSP 1 Score: 1066.6 bits (2757), Expect = 0.000e+0
Identity = 550/865 (63.58%), Postives = 645/865 (74.57%), Query Frame = 0
Query: 1 MDGQDSISDQPIVSPPAPPAQP--EPESTQPPAPVPEP---GEKRKQPEPDSAPTPPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTWDPTSERGKKMKVENGESVEVKRGTDEVSITEAI-------------GEDCCSDNVLEKCLINLPMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELNGKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNTSE------NSDAPKSSIGVDNTDSNDDNM---TVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKKLTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEFSVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFLQHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQVSTAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAPADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQIDDVTVHGEVTHTENAT----DTKENLIIELE--------NCDGAPKCDTNGGQKSDSQQ---SCSSATAKPVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 823
M+G+DS+ + P PP Q + S A + GEKRK+ +P PP + S HPLWKTSLCSYFRR G CSHG++CRYAH EEELR RPDNTWDPTSER KK + + ES +R ++V +TEA+ D C D+ L KCL++LP +W S+NL FL + GV FKS KK+KGM VGFVSFE+A Q+K+A EEL GKSIGNK+LK+ D PR++EK+ ++LP Q T E N P SS G+++ D+N+D+ TV+ +VS++R ARD VTPLAHMSYVDQLEHK++SL Q+LK+LTRNARKACPNGVSLPEWIL SREIGGL C+LEGI+ESPLV+GYRNKCEFS GYSLQ K TVGF LGNFREGV AVEEP++CPNVS+IACKYA+IFQEFLQ+S LPIWNR NNTGFWRQLTVREGR PG+ +VE+S+A I+EV+L+VQV + GFDD ++ GEF+++ AF GA+ N+P LPLTAL++QDH GISNVAP DAPLR L IP + + D D VEARIHD I +L FCIS TAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFD+CCGTGTIGLTLAHRVGMV+GIEMNASAVSDA RNAEINGIKNC+FVC+KAED +GSLLKEYL + QK D+++ E + E AT DT + ++E E N A C NGGQ++ QQ S V FKNVVAIVDPPRVGLHP VIKALRTHP L RLVYISCNPESLVANAIELCTPS K EKGNKNNRGWR MSSAGLARHRAKSMP SEPF+P+KAMAVDLFPHT HCE+VMLLER
Sbjct: 22 MNGEDSVPE-----PSQPPQQDLDQDHSNSQSASADDTVSVGEKRKREDP-----PPSDQSSLHPLWKTSLCSYFRRNSGSCSHGDSCRYAHGEEELRPRPDNTWDPTSERAKKA-LRSEESERQERPEEDVMMTEAVVDEDDDDKDDDDKDNDGCLDSELRKCLVHLPRKWHSENLMKFLGEEGVPFKSVKKKKGMTVGFVSFESAVQLKTAQEELKGKSIGNKNLKVADIIPRSFEKKIRSAVALPIRDQQTREPALDGDNVGVPISSNGIEDGDTNNDDKNCSTVDGSVSRARRARDVVTPLAHMSYVDQLEHKRNSLMQILKRLTRNARKACPNGVSLPEWILKSREIGGLPCELEGIIESPLVNGYRNKCEFSAGYSLQGKPTVGFMLGNFREGVTAVEEPVDCPNVSRIACKYASIFQEFLQNSGLPIWNRFNNTGFWRQLTVREGRAPGK-VDVENSDASISEVILVVQVCSVGFDDAVITGEFKRLAEAFTEGAAENSPSLPLTALVVQDHQGISNVAPTDAPLRQLPIP-KAAGPEPDATADPVEARIHDSIGDLHFCISPTAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAYRNAEINGIKNCKFVCAKAEDVMGSLLKEYLNLPQKS------DEISNTSESSDKEIATPVEKDTSIDNVLEPEENSSHDHVNNKSASDCLENGGQETGIQQQGNGTSECGNTSVPQFKNVVAIVDPPRVGLHPIVIKALRTHPRLHRLVYISCNPESLVANAIELCTPSPQKIEKGNKNNRGWRGMSSAGLARHRAKSMPISEPFRPVKAMAVDLFPHTVHCEMVMLLER 867
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6JGI1 (C3H1-type domain-containing protein {ECO:0000259|PROSITE:PS50103})
HSP 1 Score: 1065.06 bits (2753), Expect = 0.000e+0
Identity = 534/816 (65.44%), Postives = 626/816 (76.72%), Query Frame = 0
Match: A0A2J6JGI1 (C3H1-type domain-containing protein {ECO:0000259|PROSITE:PS50103})
HSP 1 Score: 1065.06 bits (2753), Expect = 0.000e+0
Identity = 534/816 (65.44%), Postives = 626/816 (76.72%), Query Frame = 0
Query: 9 DQPIVSPPAPPAQPEPESTQPPAPVPEPGEKRKQPEPDSAPTPPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTWDPTSERGKKMKVENGESVEVKRGTDEVSITEAIGEDCCSDNVLEKCLINLPMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELNGKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNTSENSDAPKSSIGVDNTDSNDDNMTVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKKLTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEFSVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFLQHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQVSTAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAPADAPLRSLTIPNEKSETR-QDDVKDVVEARIHDYISNLQFCISATAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQIDDVTVHGEVTHTENATDTKENLIIELENCDGAPKCDTNGGQKSDSQQSCSSATAKPVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 823
D VS +P A+P + Q GEKRK+ E ++ S HPL KTSLCSYFRRTGGECSHGETCRYAH EEELR RPDNTWDPTSER KK+K+EN + + DEV +TE I ED CS++ L+KCL+NLPM+WSSDNLR+FL + G+ +KSAK +KGM+VGFV+FET EQVK+ +E+L GK GN+ LKI D PR++++ ++ S+NS + + V++ DS +D+ T S+V K RSAR+ VTPLAH+SY DQLEHKK+SL Q +KKLTRNARKACPNGVSLP+WILNSREIGGL CKLEGI+ESPLV+GYRNKCEFSVGYSLQ K TVGFSLGNFREGV AVEEPL+CPNVS+I CKYA IFQ+FL+ S PIWNR+NNTGFWRQLTVREGR PG+ EVE E++++EVL+MVQ+ + G DD +N E EKM AF GAS N+P LPLT L++QDH GISNVAPADAPLR L++ K E+R +D + V EARI DYI+NL+F IS TAFFQVNTLAAEKLYSLAGDWA LGP+TLLFD+CCGTGTIGLTLAHRVGMVVGIEMNASAV+DA RNAEINGIKNCRFVCSKAED +GSLLKEYL K +D I D V + D KE K + +++ + ++ K ++YF+NVVAIVDPPRVGLHPTVIKALRTH L+RLVYISCNPESL+ANAIELCTPS D EKGNKNNRGWRNMSSAGLARHRAKSMP SEPF+P+KAMAVDLFPHTPHCELVMLLER
Sbjct: 27 DCATVSHSSPDAKPVEDVEQ--------GEKRKKTESETVEKT----TSIHPLSKTSLCSYFRRTGGECSHGETCRYAHGEEELRPRPDNTWDPTSERAKKLKLENEDRDKADERDDEVMMTETISEDGCSESALDKCLVNLPMKWSSDNLRNFLNEQGIEYKSAKTKKGMIVGFVTFETTEQVKTGIEKLQGKPFGNRTLKIADVIPRSFDRNVKPKM--------VSDNSATSEPANEVEDGDSVNDSSTPGSSVLKGRSAREVVTPLAHLSYKDQLEHKKTSLAQTMKKLTRNARKACPNGVSLPDWILNSREIGGLPCKLEGIIESPLVNGYRNKCEFSVGYSLQGKPTVGFSLGNFREGVTAVEEPLDCPNVSRIGCKYAEIFQKFLESSTFPIWNRMNNTGFWRQLTVREGRTPGKIAEVESGESNVSEVLVMVQICSKGIDDEAINVELEKMAEAFVIGASTNSPSLPLTVLVVQDHQGISNVAPADAPLRHLSLT--KGESRLMEDSEIVAEARIQDYINNLRFFISPTAFFQVNTLAAEKLYSLAGDWANLGPNTLLFDVCCGTGTIGLTLAHRVGMVVGIEMNASAVADANRNAEINGIKNCRFVCSKAEDVMGSLLKEYL---TKKLD-SGISDSNVG---IKEDEKKDIKE------------VKKEEENNSVNENNNNNNNNNEKKMEYFENVVAIVDPPRVGLHPTVIKALRTHSRLKRLVYISCNPESLMANAIELCTPSDDSNEKGNKNNRGWRNMSSAGLARHRAKSMPTSEPFKPVKAMAVDLFPHTPHCELVMLLER 801
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7IX65 (C3H1-type domain-containing protein {ECO:0000259|PROSITE:PS50103})
HSP 1 Score: 1064.68 bits (2752), Expect = 0.000e+0
Identity = 539/838 (64.32%), Postives = 639/838 (76.25%), Query Frame = 0
Match: A0A5C7IX65 (C3H1-type domain-containing protein {ECO:0000259|PROSITE:PS50103})
HSP 1 Score: 1064.68 bits (2752), Expect = 0.000e+0
Identity = 539/838 (64.32%), Postives = 639/838 (76.25%), Query Frame = 0
Query: 18 PPAQPEPESTQPPAPVP---------EPGEKRKQPEPDSAPTPPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTWDPTSERGKKMK-VENGESVEVKRGTD-EVSITEAIGEDCCSDNV-LEKCLINLPMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELNGKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNTSENSDAPK------SSIGVDNTDSNDDNMTVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKKLTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEFSVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFLQHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQVSTAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAPADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQIDD----VTVHGEVTHT-------ENATDTKENLIIELENCDGAPKCDTNGGQKSDSQ--QSCSSATAK-PVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 823
PP QP P P P EKRK+ E D P PE S HP+ KTSLCSYFR+ G C HG CRYAH EEELR RPDNTWDPT +R KK K +ENGE EV + ++ + S+N L KCL++LP +W+SD+L+ FLTD G+ KSAKK+KGM VGFVSFE+AEQ+KSA+E L GKS+GNK+LK+ D PR+ +K+ ++LPQ+T+ T++++ A + SS G+++ ++NDD+ + + SK+RSARD VTPLAH+SY +QLEHKK+S+ QMLKKLTRNARKACPNGVSLPEWI+ SREIGGL CKLEGI+ESPLV+GYRNKCEFSVGYSLQ K TVGF LGNFREGV AVEEP++CPNVS+I+C+YA+IFQEFLQHSELPIWNR NTGFWRQLTVREGR P +ST+ E+ EA+++EV+LMVQVS+ GFDD ++N EFE++ AF GA+A++PPLPLTAL++QDH GISNVAPADAPLR L IP +S + D+VE RIHD ISNL+FCIS TAFFQVNTLAAEKLYSLAGDWA LGPDTLLFD+CCGTGTIGLTLAHRVGMV+GIEMNASA+SDA RNAEINGIKNCRF C KAED +GSLLKEY ++VP+ D T + E+T E+ DT+EN + EN A +C N G + Q ++C S VQ FKNVVAIVDPPR GLHPTVIK LRTH HLRRLVYISCNPE+LVANAIELCTPS +K EKGNK+NRGWRNMSSAGLAR RAKSMP SEPFQP+KAMAVDLFPHT HCE+VMLLER
Sbjct: 28 PPLNAVEAIQQPSIPQPTDGEIDTANHPAEKRKRDESDDPQPQPKPESSLHPMSKTSLCSYFRK-AGSCRHGIGCRYAHGEEELRVRPDNTWDPTCDRAKKAKKLENGEKCEVDEEEEVMMTDMVVDDDGDGSENTGLTKCLVHLPRKWTSDHLKKFLTDQGILSKSAKKKKGMTVGFVSFESAEQLKSAMEGLEGKSVGNKNLKVADVIPRSCDKKIKLAMALPQNTEQTTDSALAGEIAGVYTSSNGIEDGNTNDDSSAPDGSASKARSARDVVTPLAHLSYSNQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILESPLVNGYRNKCEFSVGYSLQGKPTVGFMLGNFREGVTAVEEPVDCPNVSRISCRYASIFQEFLQHSELPIWNRFKNTGFWRQLTVREGRTPEKSTDAENLEANVSEVMLMVQVSSVGFDDALLNTEFERLAKAFEEGATASSPPLPLTALVVQDHQGISNVAPADAPLRQLAIPKSESGPLMEGTNDLVETRIHDSISNLRFCISPTAFFQVNTLAAEKLYSLAGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAISDAHRNAEINGIKNCRFACGKAEDVMGSLLKEY-------INVPEKQDEHASETSNKEITTAEEKDCIMEDVQDTEENSNHDPENVTVASECSVNSGNEPQMQLEKTCKSEDGNSSVQQFKNVVAIVDPPRGGLHPTVIKVLRTHSHLRRLVYISCNPETLVANAIELCTPSPEKFEKGNKDNRGWRNMSSAGLARRRAKSMPVSEPFQPVKAMAVDLFPHTSHCEMVMLLER 857
BLAST of DCAR_018815 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TTS4 ((zinc finger CCCH domain-containing protein 24 {ECO:0000313|RefSeq:XP_011089308.1}))
HSP 1 Score: 1058.9 bits (2737), Expect = 0.000e+0
Identity = 543/840 (64.64%), Postives = 632/840 (75.24%), Query Frame = 0
Match: A0A6I9TTS4 ((zinc finger CCCH domain-containing protein 24 {ECO:0000313|RefSeq:XP_011089308.1}))
HSP 1 Score: 1058.9 bits (2737), Expect = 0.000e+0
Identity = 543/840 (64.64%), Postives = 632/840 (75.24%), Query Frame = 0
Query: 1 MDGQDSISDQPIVSPPAPPAQPEPESTQPPAPVPEPGEKRK-QPEPD----SAPTPPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTWDPTSERGKKMKVENGESVEVKRGTDEVSITEAI---GEDCCSDNVLEKCLINLPMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELNGKSIGN-KDLKIVDATPRAYEKRKAGEISLPQSTQNTSENSDAPKSSIGVDNTDSNDDNMTVES-TVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKKLTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEFSVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFLQHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQVSTAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAPADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQIDD------VTVHGEVTHTENATDTKENLIIELENCDGAPKCDTNGGQKSDSQQSCSSATAKPVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPESLVANAIELCTPSFDKTEKG-NKNNRGWRNMSSAGLARHRAKSMPNSEPFQPIKAMAVDLFPHTPHCELVMLLER 823
MD QDS SD PP P P P S EKRK +PEPD S P PPP +HPLWKTSLCSYFRRTGG CSHGE+CRYAH E ELR RPD+TWDPTSER KKM + + + +T+A+ GE+ S L KC +NLPM+WSSDNLR+FL++ G+ FKSAKK+KGM+VGFV+FE AEQVK AV+EL+GKS+GN + LK+ D PR +EK ++N S + D + +N +++ D V S +V K +S RD VTPLAHM+Y DQL+HKK+SL Q LK+LTRNARKACPNGVSLPEWILNSREIGGL CKLEGI+ESPLV+GYRNKCEFSVG SLQ K TVGF LGNFREGV AV+EPL+CPNVS+IAC+YA +FQEFL HS P+WNRLNNTGFWRQLTVREGR+P TEVE E IAEV+L+VQV T FDDG + E E++ F+ G++ +PPLPLTAL+IQDHTGISN AP DAPLR + I N+ + + DV E RIHDYISNL+F IS +AFFQVNTLAAEKLYSL+GDWAGLGPDTLLFD+CCGTGTIGLTLAHRVGMVVGIEMNASAVSDA RNAEINGIKNCRFVC KAED +GSL+KEYL + K + ++ + V+V ++ ++ T ++NLI+E EN A KC + Q Q+ + + PVQ FKNVVAIVDPPRVGLHPTVIK LRT LRRLVYISCNPESLVANAIELCTPS DKTEKG NKNNRGW+NMSSAGLARHRAKSMPNSEPF+P+KAMAVDLFPHTPHCELVMLLER
Sbjct: 14 MDHQDS-SD-----PPVPSEDPSPSSLVDT----NLAEKRKREPEPDPEISSDPAPPP----QHPLWKTSLCSYFRRTGGSCSHGESCRYAHGEAELRPRPDHTWDPTSERAKKMARTEEKEKVEEAEDGGIMMTDALDVEGEEPSSG--LSKCFVNLPMKWSSDNLRNFLSEQGLLFKSAKKKKGMIVGFVNFENAEQVKIAVKELDGKSVGNNRTLKVADVIPRPFEKNNKPT----HKSENPSLDGDHMNMTEATNNDEADGDGSLVPSGSVVKCKSVRDVVTPLAHMTYSDQLDHKKNSLAQTLKRLTRNARKACPNGVSLPEWILNSREIGGLPCKLEGIIESPLVNGYRNKCEFSVGCSLQGKHTVGFLLGNFREGVTAVQEPLDCPNVSRIACRYATVFQEFLLHSLFPVWNRLNNTGFWRQLTVREGRRPCTMTEVEKPETSIAEVMLIVQVCTKDFDDGQIKDEIERLAREFSVGSTVESPPLPLTALVIQDHTGISNAAPPDAPLRYVFI-NKGGDCGLELANDVAEPRIHDYISNLRFSISPSAFFQVNTLAAEKLYSLSGDWAGLGPDTLLFDVCCGTGTIGLTLAHRVGMVVGIEMNASAVSDAQRNAEINGIKNCRFVCGKAEDVIGSLMKEYLSLPHKQDESSEMSENKESEVVSVDRSISSADSVTRIEDNLIVEHENGSSAGKCSKDEAQL---QKHGTLESITPVQQFKNVVAIVDPPRVGLHPTVIKVLRTQSRLRRLVYISCNPESLVANAIELCTPSLDKTEKGTNKNNRGWKNMSSAGLARHRAKSMPNSEPFKPVKAMAVDLFPHTPHCELVMLLER 829
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7C2I9 | E-Value: 0.000e+0, PID: 69.16 | (Putative zinc finger CCCH domain-containing prote... [more] |
| A0A5J5BLN3 | E-Value: 0.000e+0, PID: 67.98 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8544... [more] |
| A0A7J0HBI1 | E-Value: 0.000e+0, PID: 66.67 | (Zinc finger (CCCH-type) family protein {ECO:00003... [more] |
| A0A2R6P7M1 | E-Value: 0.000e+0, PID: 66.67 | (Zinc finger CCCH domain-containing protein {ECO:0... [more] |
| F6GU02 | E-Value: 0.000e+0, PID: 66.71 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4366... [more] |
| A0A834CZG1 | E-Value: 0.000e+0, PID: 63.56 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5470... [more] |
| A0A2I4DW00 | E-Value: 0.000e+0, PID: 63.58 | (zinc finger CCCH domain-containing protein 24-lik... [more] |
| A0A2J6JGI1 | E-Value: 0.000e+0, PID: 65.44 | C3H1-type domain-containing protein {ECO:0000259|P... [more] |
| A0A5C7IX65 | E-Value: 0.000e+0, PID: 64.32 | C3H1-type domain-containing protein {ECO:0000259|P... [more] |
| A0A6I9TTS4 | E-Value: 0.000e+0, PID: 64.64 | (zinc finger CCCH domain-containing protein 24 {EC... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |