Resource Type:
Polypeptide
Name:
DCAR_018816
Identifier:
DCAR_018816.mRNA-protein
Sequence:
MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLL
ESGDCELDVGVSDLDVDVTGYWKPGFSTMFEFFGGSVRKKERKDLSRSVF
KELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWK
KRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIG
TSASYSGSSVRSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFE
HYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKR
VVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKA
GITFVYHPDLVGYTVPQLVSDEELSAPHEVDEFEFIRWFKETITEDDFVI
LMMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLF
RGLRNGGVFSHQWWEPETLF*
Sequence Length:
471
Sequence Checksum:
764bddd958a17a4ee10f3ffc2006dc2a
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_018816, derives from mRNA, DCAR_018816. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PQ48 ((Methyltransferase PMT28 {ECO:0000313|EMBL:PSR95185.1}))
HSP 1 Score: 567.77 bits (1462), Expect = 0.000e+0
Identity = 280/465 (60.22%), Postives = 351/465 (75.48%), Query Frame = 0
Match: A0A2R6PQ48 ((Methyltransferase PMT28 {ECO:0000313|EMBL:PSR95185.1}))
HSP 1 Score: 567.77 bits (1462), Expect = 0.000e+0
Identity = 280/465 (60.22%), Postives = 351/465 (75.48%), Query Frame = 0
Query: 1 MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLLESGDCELDVGVSDLDVDVTGYWKPGFSTMFEFFGGSVRKKERKDLSRSVFKELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWKKRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIGTSASYSGSSVRSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFEHYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKRVVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKAGITFVYHPDLVG-YTVPQLVSDEE-LSAPHEVDEFEFIRWFKETITEDDFVILMMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLFRGLRNGGVFSHQW 463
MD KVL+WQI RGSLA+RLFMRALLF LAM + +FVQ+ +D+R + + +C + +G++ ++TG+ KP S F F G KE +L+ V KELM K +LD+ A+ALCVGEGS L+E+G S A GV HP FSL +KRF+YEL F+DN FDFVFSR +DRVSVPALLVLEIERVLRPGG GAML+G S+ YSG +RSATPVSSFLKSS++V VCGIGSF LV FKKRFD VA FEHYRLP++C SI N+KPF+K+MEPL G +E+++SYL +FMN+SSR R +YIN+GAGELVNSSI+E+ +P Y + +YV+DHN S LS YV+ G+TFVYHP L G + L SD++ LSAP + +EF+FIRWFK T++++DFV+LMM A+A ELKILFELFESGAIC VDELF+ CSD+ DC + CGDC SLF+GLRN GVF H+W
Sbjct: 1 MDLKVLKWQIRRGSLARRLFMRALLFALAMAVFTFVQIVHDVRTMEPLAMNFNECTMSIGLNPY-ANLTGFLKPISSFGFPFHGPC---KEVGNLTNDVVKELMEKNLLDSGAKALCVGEGSATAVSALRELGFSKAFGVDRHPSFSLLQKRFLYELDFKDNYFDFVFSRALDRVSVPALLVLEIERVLRPGGTGAMLVGASSFYSGGLIRSATPVSSFLKSSNVVHVCGIGSFTLVIFKKRFDKVAFFEHYRLPSECRSIKNSKPFIKFMEPLVDKNSGPIETKLSYLPEFMNISSRNRFIYINIGAGELVNSSISEMFKPFYPREPRAFNVYVVDHNISVLSSYVKTPGVTFVYHPGLAGDKAITSLSSDDDYLSAPFDEEEFDFIRWFKRTVSDEDFVVLMMNARAVELKILFELFESGAICRVDELFLGCSDSTDCTSATCGDCVSLFKGLRNSGVFVHRW 461
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GQR1 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241})
HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0
Identity = 280/466 (60.09%), Postives = 351/466 (75.32%), Query Frame = 0
Match: A0A7J0GQR1 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241})
HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0
Identity = 280/466 (60.09%), Postives = 351/466 (75.32%), Query Frame = 0
Query: 1 MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLLESGDCELDVGVSDLDVDVTGYWKPGFSTMFEFFGGSVRKKERKDLSRSVFKELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWKKRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIGTSASYSGSSVRSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFEHYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKRVVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKAGITFVYHPDLVG-YTVPQLVSDEE-LSAPHEVDEFEFIRWFKETITEDDFVIL-MMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLFRGLRNGGVFSHQW 463
MD KVL+WQI RGSLA+RLFMRALLF LAM + +FVQ+ +D+R + + +C + +G++ ++TG+ KP S F F G KE +L+ V KELM K +LD+ A+ALCVGEGS L+E+G S A GV HP FSL +KRF+YEL F+DN FDFVFSR +DRVSVPALLVLEIERVLRPGG GAML+G S+ YSG +RSATPVSSFLKSS++V VCGIGSF LV FKKRFD VA FEHYRLP++C SI N+KPF+K+MEPL G +E+++SYL +FMN+SSR R +YIN+GAGELVNSSI+E+ +P Y + +YV+DHN S LS YV+ G+TFVYHP L G + L SD++ LSAP + +EF+FIRWFK T++++DFV+L MM A+A ELKILFELFESGAIC VDELF+ CSD+ DC + CGDC SLF+GLRN GVF H+W
Sbjct: 1 MDLKVLKWQIRRGSLARRLFMRALLFALAMAVFTFVQIVHDVRTMEPLAMNFNECTMSIGLNPY-ANLTGFLKPMSSFGFPFHGPC---KEVGNLTNDVVKELMEKNLLDSGAKALCVGEGSATAVSALRELGFSKAFGVDRHPSFSLLQKRFLYELDFKDNYFDFVFSRALDRVSVPALLVLEIERVLRPGGTGAMLVGASSFYSGGLIRSATPVSSFLKSSNVVHVCGIGSFTLVIFKKRFDKVAFFEHYRLPSECRSIKNSKPFIKFMEPLVDKNSGPIETKLSYLPEFMNISSRNRFIYINIGAGELVNSSISEMFKPFYPREPRAFNVYVVDHNISVLSSYVKTPGVTFVYHPGLAGDKAITSLSSDDDYLSAPFDEEEFDFIRWFKRTVSDEDFVVLMMMNARAVELKILFELFESGAICRVDELFLGCSDSTDCTSATCGDCVSLFKGLRNSGVFVHRW 462
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BQW1 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241})
HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0
Identity = 281/468 (60.04%), Postives = 353/468 (75.43%), Query Frame = 0
Match: A0A5B7BQW1 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241})
HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0
Identity = 281/468 (60.04%), Postives = 353/468 (75.43%), Query Frame = 0
Query: 1 MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLLESGDCELD-VGVSDLDVDVTGYWKPGFSTMFEFFGGSVRK--KERKDLSRSVFKELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWKKRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIGTSASYSGSSVRSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFEHYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKRVVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKAGITFVYHPDLVGY-TVPQLVSDEELSAPHEVDEFEFIRWFKETITEDDFVILMMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLFRGLRNGGVFSHQWW 464
MD KVL+WQILRGSLA+RL ++A LF LAM II FVQ +DIR + L DC L+ VG + ++ TG+ KP + F FG ++ + KE ++L+ +V KELM K +LD+ A+ALCVG+GS L L+E+G S+A GV HPFFSLW+KRFVYEL F+DN FDFV+SR +DRVSVPALLV EIERV+RPGG GAML+G S YSG +R+ATPVSSFL+SS +V VC IG F LV FKK+FD+VA FEHYRLPN+CPS+TNNKP +KY+EP G+L++E+SYL KFMN+SSRKR++YIN+GAGE VN+S+ + EP Y + +YV+DH+ SALS YV+K G+TFVYHP L G SD + SAP + + F+FIRWFK+TI E DFV+LMM A+ ELKILFELF+SG IC+VDELF++CSD+ DC D+VCGDC SLFRGLRN GVF HQWW
Sbjct: 1 MDIKVLKWQILRGSLARRLLLKAFLFALAMAIIPFVQFVHDIRTIEPLSLNFDDCPLNIVGSNPFYLNFTGFLKPVSAFAFPLFGSTLLRPCKESENLTVNVLKELMEKDLLDSGAKALCVGDGSASAVLSLRELGFSNAFGVDRHPFFSLWRKRFVYELDFKDNYFDFVYSRALDRVSVPALLVREIERVMRPGGTGAMLVGASDFYSGGLIRAATPVSSFLRSSDVVHVCSIGPFTLVIFKKKFDSVASFEHYRLPNECPSVTNNKPSIKYLEPFVDESPGELKTELSYLPKFMNMSSRKRLIYINIGAGEFVNASVATMFEPYYPIRSHAFNVYVVDHDTSALSSYVKKPGVTFVYHPGLAGVEPTASYDSDGDPSAPLDDEGFDFIRWFKDTIAEGDFVVLMMNARVVELKILFELFKSGGICNVDELFLRCSDSVDCGDAVCGDCMSLFRGLRNSGVFVHQWW 468
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7FVJ5 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241})
HSP 1 Score: 554.673 bits (1428), Expect = 0.000e+0
Identity = 270/467 (57.82%), Postives = 348/467 (74.52%), Query Frame = 0
Match: A0A7J7FVJ5 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241})
HSP 1 Score: 554.673 bits (1428), Expect = 0.000e+0
Identity = 270/467 (57.82%), Postives = 348/467 (74.52%), Query Frame = 0
Query: 1 MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLLESGDCELDVGVSDLDVDVTGYWKPGFSTMFEFFGG--SVRKKERKDLSRSVFKELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWKKRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIGTSASYSGSSVRSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFEHYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKRVVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKAGITFVYHPDLV-GYTVPQLVSDEELSAPHEVDEFEFIRWFKETITEDDFVILMMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLFRGLRNGGVFSHQWW 464
MDFK L+WQI+RGSLA+RL +RA LF LAM II + Q+ +D R + ++ +C L +G S+ ++ TG+ KP + F F G KE ++L+ ++FKELM K +LD+ +ALCVGEGS L L+E+G S A GV HPFFSL +KRFVYEL F+DN FDF+FSR +DRVSVPALLV EIERVLRPGG GAML+G + YSGS +RSATP+SSFL+SS++V VC IGSF LV FKKRFD VA FEHYRLP++CPS++NNKPF+K MEPL + G + ++SYL +FMN+SSR R++YINVG GE VNSS++E+ P Y + Q +YV+DH+ S +S +V+K G+TFVY+P L G L SDE+L AP + +EF+F RWF+ T+ + DFV+LMM A+ ELKILF LFESGAICHVDELF++CSD+ DC ++VCGDC SLFRGLRN GVF H+ W
Sbjct: 69 MDFKALKWQIIRGSLARRLILRAFLFVLAMAIIPYFQIVHDFRTMEPLAMKFDECPLSIG-SNPYINFTGFLKPVSAFKFPFLGSLFFTPCKETENLTINMFKELMEKNLLDSSGKALCVGEGSASAVLALRELGFSSASGVRIHPFFSLLRKRFVYELDFKDNYFDFLFSRAIDRVSVPALLVAEIERVLRPGGTGAMLVGGNL-YSGSLIRSATPISSFLRSSNVVHVCHIGSFTLVIFKKRFDKVASFEHYRLPSECPSVSNNKPFIKNMEPLVGKRSGPFKEKLSYLPEFMNISSRNRLIYINVGTGEFVNSSVSEMFNPFYPIQPQAFNIYVVDHDVSVISSHVKKPGVTFVYYPGLAGGKATTSLSSDEDLCAPPDDEEFDFTRWFRRTVIDGDFVVLMMNAREVELKILFALFESGAICHVDELFLRCSDSVDCTNAVCGDCMSLFRGLRNSGVFVHRLW 533
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3YRG6 ((uncharacterized protein LOC107778849 {ECO:0000313|RefSeq:XP_016454657.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 274/470 (58.30%), Postives = 348/470 (74.04%), Query Frame = 0
Match: A0A1S3YRG6 ((uncharacterized protein LOC107778849 {ECO:0000313|RefSeq:XP_016454657.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 274/470 (58.30%), Postives = 348/470 (74.04%), Query Frame = 0
Query: 1 MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLLESGDCELDVGVSDLDVDVTGYWKPGFSTMFEFFGGSVRKKERKDLSRSVFKELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWKKRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIGTSASYSGSSV-----RSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFEHYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKRVVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKAGITFVYHPDLVGYTV-PQLVSDEELSAPHEVDEFEFIRWFKETITEDDFVILMMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLFRGLRNGGVFSHQWW 464
MD VL+WQIL GSL KRL ++ LF M ++SFVQM + IR ++L G C L+ G S+ +++VTG++KP F FG S+ K E ++LS++VFKELM K LD A+ALCVG+ S AL L+E+GLS+A+GV HP+FSL +RFVYEL +EDN+FDFVFSRD+DRVSVPALLVLEIERVLRPGG GAML+ +S+ Y+G+ + RSATPVSSFLKSS +V VCG+G F LV FKKR + V E LP CPS TNNKPF+KY+EPL + GQ E+EISYL K+MN+SSR ++VYIN+GAGE V SSI + +P+Y +P ++V+DHN SAL LYV+ GI FVYHP L G + P L SDE LSAP + + F+FI WF ET+ E D+V+LMM A+AAEL IL ELF +G+ICHVDELF++CS ADCK+++CGDC SLF+ LR GGVF+HQWW
Sbjct: 1 MDMNVLKWQILHGSLVKRLIVKGFLFVTVMIVVSFVQMGHLIRNSEPMVLNFGVCPLNFG-SNPNMNVTGFFKPVSGLAFPLFGASLVKCEDENLSKNVFKELMEKNFLDLNAKALCVGKKSSAAALALRELGLSNAIGVDRHPYFSLLWRRFVYELDYEDNAFDFVFSRDLDRVSVPALLVLEIERVLRPGGTGAMLVSSSSFYAGNLIKGNLIRSATPVSSFLKSSDVVHVCGVGGFTLVMFKKRSEIVESLERAVLPANCPSTTNNKPFLKYLEPLVEKRSGQFETEISYLPKYMNISSRNKLVYINIGAGEFVESSIARMFKPHYPIPHHFFNVFVVDHNTSALPLYVKNPGINFVYHPGLGGEDISPFLDSDEYLSAPLDHEGFDFIPWFSETVKEGDYVVLMMNARAAELNILSELFRTGSICHVDELFLRCS-AADCKNALCGDCISLFKTLRGGGVFAHQWW 468
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EQD3 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241})
HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0
Identity = 269/467 (57.60%), Postives = 346/467 (74.09%), Query Frame = 0
Match: A0A4S4EQD3 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241})
HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0
Identity = 269/467 (57.60%), Postives = 346/467 (74.09%), Query Frame = 0
Query: 1 MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLLESGDCELDVGVSDLDVDVTGYWKPGFSTMFEFFGG--SVRKKERKDLSRSVFKELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWKKRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIGTSASYSGSSVRSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFEHYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKRVVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKAGITFVYHPDLV-GYTVPQLVSDEELSAPHEVDEFEFIRWFKETITEDDFVILMMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLFRGLRNGGVFSHQWW 464
MDFK L+WQI+RGSLA+RL +RA LF LAM II + Q+ +D R + ++ +C L +G S+ ++ TG+ KP + F F G KE ++L+ ++FKELM K +LD+ +ALCVGEGS L L+E+G S A GV HPFFSL +KRFVYEL F+DN FDF+FSR +DRVSVPALLV EIERVLRPGG GAML+G + YSGS +RSATP+SSFL+SS++V VC I SF LV FKKRFD VA FEHYRLP++CPS++NNKPF+K MEPL + G + ++SYL +FMN+SSR R++YINVG GE VNSS++E+ P Y + Q +YV+DH+ S +S +V+K G+TFVY+P L G L SDE+L AP + +EF+F RWF+ T+ + DFV+LMM A+ ELKILF LFESGAICHVDELF+ CSD+ DC ++VCGDC SLFRGLRN GVF H+ W
Sbjct: 1 MDFKALKWQIIRGSLARRLILRAFLFVLAMAIIPYFQIVHDFRTMEPLAMKFDECPLSIG-SNPYINFTGFLKPVSAFKFPFLGSLFFTPCKETENLTINMFKELMEKNLLDSSGKALCVGEGSASAVLALRELGFSSAFGVRIHPFFSLLRKRFVYELDFKDNYFDFLFSRAIDRVSVPALLVAEIERVLRPGGTGAMLVGGNL-YSGSLIRSATPISSFLRSSNVVHVCHIESFTLVIFKKRFDKVASFEHYRLPSECPSVSNNKPFIKNMEPLVGKRSGPFKEKLSYLPEFMNISSRNRLIYINVGTGEFVNSSVSEMFNPFYPIQPQAFNIYVVDHDVSVISSHVKKPGVTFVYYPGLAGGKATTSLSSDEDLCAPPDDEEFDFTRWFRRTVKDGDFVVLMMNAREVELKILFALFESGAICHVDELFLCCSDSVDCTNAVCGDCMSLFRGLRNSGVFVHRLW 465
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Y6E3 ((uncharacterized protein LOC107772802 {ECO:0000313|RefSeq:XP_016447761.1}))
HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 274/470 (58.30%), Postives = 349/470 (74.26%), Query Frame = 0
Match: A0A1S3Y6E3 ((uncharacterized protein LOC107772802 {ECO:0000313|RefSeq:XP_016447761.1}))
HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 274/470 (58.30%), Postives = 349/470 (74.26%), Query Frame = 0
Query: 1 MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLLESGDCELDVGVSDLDVDVTGYWKPGFSTMFEFFGGSVRKKERKDLSRSVFKELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWKKRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIGTSASYSGSSV-----RSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFEHYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKRVVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKAGITFVYHPDLVGY-TVPQLVSDEELSAPHEVDEFEFIRWFKETITEDDFVILMMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLFRGLRNGGVFSHQWW 464
MD VL+WQIL GSL KRL ++ LF M ++SFVQM + IR ++L G C L+ G S+ +++VTG++KP F FG ++ K E ++LS++VFKELM K LD A+ALCVG+ S AL L+E+GLS+A+GV HP+FSL +RFVYEL +EDNSFDFVFSRD+DRVSVPALLVLEIERVLRPGG GAML+ +S+ YSG+ + RSATPVSSFLKSS +V VCG+GSF LV FKKR + V E LP CPS TNNKPF+KY+EPL + GQ E+EISYL KFMN+SSR ++VYIN+GAGE V +SI + +P+Y +P ++V+DHN SAL LYV+ GI FVYHP L G T P L SDE LSAP + + F+FI WF ET+ E D+V+LMM A+AAEL IL ELF++G+IC+VDELF++CS ADCK+++CGDC +LF+ LR GVF+HQWW
Sbjct: 1 MDINVLKWQILHGSLVKRLIVKGFLFVTVMIVVSFVQMGHLIRNSEPMVLNFGVCPLNFG-SNPNMNVTGFFKPVSGVAFPLFGAALVKCEDENLSKNVFKELMEKNFLDLNAKALCVGKKSLAAALALRELGLSNAIGVDRHPYFSLLWRRFVYELDYEDNSFDFVFSRDLDRVSVPALLVLEIERVLRPGGTGAMLVSSSSFYSGNLIKGNLIRSATPVSSFLKSSDVVHVCGVGSFTLVMFKKRSEIVESLERSVLPANCPSTTNNKPFLKYLEPLVEKRSGQFETEISYLPKFMNISSRNKLVYINIGAGEFVETSIARMFKPHYPIPHHFFNVFVIDHNTSALPLYVKNPGINFVYHPGLGGEDTSPFLDSDEYLSAPLDHEGFDFIPWFSETVKEGDYVVLMMNARAAELNILTELFKTGSICYVDELFLRCS-AADCKNALCGDCITLFKTLRESGVFAHQWW 468
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7V3K9 ((uncharacterized protein LOC104212055 {ECO:0000313|RefSeq:XP_009759541.1}))
HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 274/470 (58.30%), Postives = 349/470 (74.26%), Query Frame = 0
Match: A0A1U7V3K9 ((uncharacterized protein LOC104212055 {ECO:0000313|RefSeq:XP_009759541.1}))
HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 274/470 (58.30%), Postives = 349/470 (74.26%), Query Frame = 0
Query: 1 MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLLESGDCELDVGVSDLDVDVTGYWKPGFSTMFEFFGGSVRKKERKDLSRSVFKELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWKKRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIGTSASYSGSSV-----RSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFEHYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKRVVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKAGITFVYHPDLVGY-TVPQLVSDEELSAPHEVDEFEFIRWFKETITEDDFVILMMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLFRGLRNGGVFSHQWW 464
MD VL+WQIL GSL KRL ++ LF M ++SFVQM + IR ++L G C L+ G S+ +++VTG++KP F FG ++ K E ++LS++VFKELM K LD A+ALCVG+ S AL L+E+GLS+A+GV HP+FSL +RFVYEL +EDNSFDFVFSRD+DRVSVPALLVLEIERVLRPGG GAML+ +S+ YSG+ + RSATPVSSFLKSS +V VCG+GSF LV FKKR + V E LP CPS TNNKPF+KY+EPL + GQ E+EISYL KFMN+SSR ++VYIN+GAGE V +SI + +P+Y +P ++V+DHN SAL LYV+ GI FVYHP L G T P L SDE LSAP + + F+FI WF ET+ E D+V+LMM A+AAEL IL ELF++G+IC+VDELF++CS ADCK+++CGDC +LF+ LR GVF+HQWW
Sbjct: 55 MDINVLKWQILHGSLVKRLIVKGFLFVTVMIVVSFVQMGHLIRNSEPMVLNFGVCPLNFG-SNPNMNVTGFFKPVSGVAFPLFGAALVKCEDENLSKNVFKELMEKNFLDLNAKALCVGKKSLAAALALRELGLSNAIGVDRHPYFSLLWRRFVYELDYEDNSFDFVFSRDLDRVSVPALLVLEIERVLRPGGTGAMLVSSSSFYSGNLIKGNLIRSATPVSSFLKSSDVVHVCGVGSFTLVMFKKRSEIVESLERSVLPANCPSTTNNKPFLKYLEPLVEKRSGQFETEISYLPKFMNISSRNKLVYINIGAGEFVETSIARMFKPHYPIPHHFFNVFVIDHNTSALPLYVKNPGINFVYHPGLGGEDTSPFLDSDEYLSAPLDHEGFDFIPWFSETVKEGDYVVLMMNARAAELNILTELFKTGSICYVDELFLRCS-AADCKNALCGDCITLFKTLRESGVFAHQWW 522
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KT79 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241})
HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 271/470 (57.66%), Postives = 346/470 (73.62%), Query Frame = 0
Match: A0A314KT79 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241})
HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 271/470 (57.66%), Postives = 346/470 (73.62%), Query Frame = 0
Query: 1 MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLLESGDCELDVGVSDLDVDVTGYWKPGFSTMFEFFGGSVRKKERKDLSRSVFKELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWKKRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIGTSASYSGSSV-----RSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFEHYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKRVVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKAGITFVYHPDLVGYTV-PQLVSDEELSAPHEVDEFEFIRWFKETITEDDFVILMMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLFRGLRNGGVFSHQWW 464
MD VL+ QIL GSL KRL ++ LF M ++SFVQM + IR ++L G C L+ G S+ +++VTG++KP F FG ++ K E ++LS++VFKELM K LD A+ALCVG+ S AL L+E+G+ +A+GV HP+FSL +RFVYEL +EDNSFDFVFSRD+DRVSVPALLVLEIERVLRPGG GAML+G+S+ Y+G+ + RSATPVSSFLKSS +V VCG+GSF LV FKKR + V E LP CPS TNNKPF+KY+EPL + GQ E+EISYL KFMN+SSR ++VYIN+GAGE V SSI +I +P+Y +P + ++V+DHN SAL LYV+ GI FVYHP L G P L SDE LSAP + + F+FI WF ET+ E D+V+LMM A+ AEL IL ELF + +IC+VDELF++CS ADCK+++CGDC SLF+ LR GVF+HQWW
Sbjct: 1 MDMNVLKLQILHGSLVKRLIVKGFLFVTVMIVVSFVQMGHLIRNSEPMVLNFGVCPLNFG-SNPNMNVTGFFKPVSGLAFPLFGAALVKCEDENLSKNVFKELMEKNFLDLNAKALCVGKKSLAAALALRELGVWNAIGVDRHPYFSLLWRRFVYELDYEDNSFDFVFSRDLDRVSVPALLVLEIERVLRPGGTGAMLVGSSSFYAGNLIKGNLIRSATPVSSFLKSSDVVHVCGVGSFTLVMFKKRSEIVESLERAVLPANCPSTTNNKPFLKYLEPLVEKRSGQFETEISYLPKFMNISSRNKLVYINIGAGEFVESSIAKIFKPHYPIPHHFLNVFVIDHNTSALPLYVKNPGINFVYHPGLGGEDASPFLDSDEYLSAPLDHEGFDFIPWFSETVEEGDYVVLMMNARTAELNILAELFRTRSICNVDELFLRCS-AADCKNALCGDCISLFKTLRGSGVFAHQWW 468
BLAST of DCAR_018816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4M555 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241} (Fragment))
HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 270/471 (57.32%), Postives = 340/471 (72.19%), Query Frame = 0
Match: A0A6A4M555 (Methyltransf_11 domain-containing protein {ECO:0000259|Pfam:PF08241} (Fragment))
HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 270/471 (57.32%), Postives = 340/471 (72.19%), Query Frame = 0
Query: 1 MDFKVLQWQILRGSLAKRLFMRALLFTLAMGIISFVQMSNDIRKGGLVLLESG--DCELDVGVSDLDVDVTGYWKP--GFSTMFE--FFGGSVRKKERKDLSRSVFKELMAKKMLDTRARALCVGEGSDLTALLLQEMGLSDAVGVHSHPFFSLWKKRFVYELGFEDNSFDFVFSRDVDRVSVPALLVLEIERVLRPGGIGAMLIGTSASYSGSSVRSATPVSSFLKSSSIVSVCGIGSFKLVTFKKRFDNVALFEHYRLPNKCPSITNNKPFMKYMEPLAINQLGQLESEISYLSKFMNVSSRKRVVYINVGAGELVNSSITEILEPNYHVPLQTVEMYVLDHNASALSLYVQKAGITFVYHPDLVG--YTVPQLVSDEELSAPHEVDEFEFIRWFKETITEDDFVILMMTAQAAELKILFELFESGAICHVDELFIQCSDTADCKDSVCGDCRSLFRGLRNGGVFSHQW 463
MDFKVL+WQILRGSLA+RLF++ LLF LAM + F Q+ +D+ G L L +G DC+L +G S+ + TG+ P F F F + DL+ V KELM KK+LD A ALCVGEGS + L L+E+G A GV HPFFS+ K+RFVYEL F+DN FDFVFSR +DRVSVPALLVLEIERVLRPGG GA+L+G S YS +RSATPVSSFL+SS++V VCGI +F LV FKKRFD VA FEHYRLP +C S+TNNKPF+K+ME L G + + SYL +FMN++SRKR++YIN+GAGE +NS+++++ +P Y V Q +YV+DH+A+ALS YV+ G+ FVYHP L G + + SDE SAP + +EF+FI WF+ T+ DFV+LMM A+ ELKILFELFE GAIC VDELF++CS ADC ++VCGDC SLFRGLRN GVF H+W
Sbjct: 1 MDFKVLKWQILRGSLARRLFLKTLLFALAMATVMFFQIVHDV--GTLEPLATGLHDCQLSIG-SNPYGNFTGFMNPVSKFGNPFSRSLFSTPC-NNDTWDLTIGVVKELMEKKLLDFGANALCVGEGSASSVLALRELGFDHAFGVDRHPFFSILKRRFVYELDFKDNYFDFVFSRALDRVSVPALLVLEIERVLRPGGTGALLVGGSNFYSAGLIRSATPVSSFLRSSNVVHVCGISTFTLVIFKKRFDKVAFFEHYRLPGECQSVTNNKPFIKHMEHLVDENSGPIATNFSYLPQFMNITSRKRMIYINIGAGEFLNSTLSDMFKPFYPVEPQAFNVYVVDHDATALSSYVKNPGVNFVYHPGLAGDKAIITSISSDEYFSAPVDEEEFDFISWFERTVENGDFVVLMMNARPVELKILFELFERGAICRVDELFLRCSXGADCANAVCGDCMSLFRGLRNSGVFVHRW 467
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6PQ48 | E-Value: 0.000e+0, PID: 60.22 | (Methyltransferase PMT28 {ECO:0000313|EMBL:PSR9518... [more] |
| A0A7J0GQR1 | E-Value: 0.000e+0, PID: 60.09 | Methyltransf_11 domain-containing protein {ECO:000... [more] |
| A0A5B7BQW1 | E-Value: 0.000e+0, PID: 60.04 | Methyltransf_11 domain-containing protein {ECO:000... [more] |
| A0A7J7FVJ5 | E-Value: 0.000e+0, PID: 57.82 | Methyltransf_11 domain-containing protein {ECO:000... [more] |
| A0A1S3YRG6 | E-Value: 0.000e+0, PID: 58.30 | (uncharacterized protein LOC107778849 {ECO:0000313... [more] |
| A0A4S4EQD3 | E-Value: 0.000e+0, PID: 57.60 | Methyltransf_11 domain-containing protein {ECO:000... [more] |
| A0A1S3Y6E3 | E-Value: 0.000e+0, PID: 58.30 | (uncharacterized protein LOC107772802 {ECO:0000313... [more] |
| A0A1U7V3K9 | E-Value: 0.000e+0, PID: 58.30 | (uncharacterized protein LOC104212055 {ECO:0000313... [more] |
| A0A314KT79 | E-Value: 0.000e+0, PID: 57.66 | Methyltransf_11 domain-containing protein {ECO:000... [more] |
| A0A6A4M555 | E-Value: 0.000e+0, PID: 57.32 | Methyltransf_11 domain-containing protein {ECO:000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |