Resource Type:
Polypeptide
Name:
DCAR_018674
Identifier:
DCAR_018674.mRNA-protein
Sequence:
MASINFNPFGENWFKKPPNPFQPITPFFDSLNPFKPQPKSPLFASITASN
PDTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKK
ENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFR
KEDKKYWRDVPHVIGLDGRPMPRKALTQREADNKFWDFTKQFFFGLWGFQ
QRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMEL
IQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAA
TAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVW
PGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRP
WEARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILR
NKLKYALTYREVQSILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENF
RLLYDTKGRFRLHSVRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRY
PDPLIKANDTIKLDLEANKIVDFIKFDVGNVVMVTGGRNTGRVGILKNRE
KHKGSFETVHIQDALGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLTII
EEARKRTAAQAATTA*
Sequence Length:
666
Sequence Checksum:
419e4f1be0735e5877bed3ee463611e2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_018674, derives from mRNA, DCAR_018674. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PFX3 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 689.108 bits (1777), Expect = 0.000e+0
Identity = 332/442 (75.11%), Postives = 379/442 (85.75%), Query Frame = 0
Match: A0A5N6PFX3 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 689.108 bits (1777), Expect = 0.000e+0
Identity = 332/442 (75.11%), Postives = 379/442 (85.75%), Query Frame = 0
Query: 1 MASINFNPFGENWFKKPPNPFQPITPF--FDSLNPFKPQPKSPL-FASITASNP------DTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEARGLKKHLKRLNAPKHWMLDKLGGAFAPKP 432
MASINFNPFGENWFKKPPNP QPI + +SLNPFKP P+S FA+I+ SNP +P+ + KPG Y++ML+QFYWE ENRPD+RH PE++R++NEDP+ EKKENPTQEEIEENE+W EFR SPVV+FLA+AE++ D +NEMELKEN PFR EDKKYW+ +PHVIG DGRPMPRKA+ T++E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQAIGYKRLEKRYYDFIM++GGW+YKDR+GRTRGP ELIQLKTAWGAGIIDK+TF+WGEDMDEW PIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPW PLKGFEKKS KQLQDEAYESKRRDL VLEANDG+WPGVRIPSHALFLWASGSELTSILE DHMPNK+IPKD+R QL KAIPGLRPWE +++ + ++ W + L GAF P
Sbjct: 1 MASINFNPFGENWFKKPPNPLQPINLYSLAESLNPFKPHPQSDSPFAAISISNPFNKKPEISPESKRPKPGFYKKMLEQFYWESENRPDYRHTPEVERILNEDPIFEKKENPTQEEIEENERWLKEFRESPVVKFLARAEEVLDEINEMELKENSEPFRWEDKKYWKSIPHVIGPDGRPMPRKAIKTKKESDDKFWDFAKQFFFGLWGFRQRPYPPGRPIDVAQAIGYKRLEKRYYDFIMRSGGWYYKDRIGRTRGPCELIQLKTAWGAGIIDKYTFIWGEDMDEWVPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWVPLKGFEKKSRKQLQDEAYESKRRDLAVLEANDGIWPGVRIPSHALFLWASGSELTSILEQDHMPNKFIPKDMRKQLQKAIPGLRPWEVLSVEQAMDQITYGGEWYREPL-GAFTTGP 441
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251TGY7 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0
Identity = 325/437 (74.37%), Postives = 374/437 (85.58%), Query Frame = 0
Match: A0A251TGY7 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0
Identity = 325/437 (74.37%), Postives = 374/437 (85.58%), Query Frame = 0
Query: 1 MASINFNPFGENWFKKPPNPFQPIT--PFFDSLNPFKP--QPKSPLFASITASNP------DTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEARGLKKHLKRLNAPKHWMLDKLGG 426
MASINFNPFGENWFKKPPNP QPI +SLNPFKP Q SP FA+I+ SNP PD KPG Y++ML+Q+YWECENRPD+RH PE++R++NEDP+ EKKENPT+EEIEENE+W EFR SPVV+FLA+AE++ D +NEMELKEN P+R EDKKYW+ +PHVIG DGRPMPRKA+ T++E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQA+GYKRLEKRYYDFIM++GGW+YKDR+GRTRGP ELIQLKTAWGAGIIDK+TF+WG+D+DEW PIGMIYGMERAVATWEVRLGAAATAF+HKLQKGIPPW PLKGFEKKS KQLQDEAYESK+RDL VLEANDG+WPGVRIPSHALFLWASGSELTSILE DHMPNKYIPKD+R QL KAIPGLRPWE +++ + ++ W + LG
Sbjct: 1 MASINFNPFGENWFKKPPNPLQPINLHNLVESLNPFKPHTQSSSP-FAAISISNPFKKKTEPEPDSRRPKPGTYKKMLEQYYWECENRPDYRHTPEVERILNEDPIFEKKENPTREEIEENERWLKEFRESPVVKFLARAEEVLDEINEMELKENSEPYRWEDKKYWKSLPHVIGPDGRPMPRKAIKTKKESDDKFWDFAKQFFFGLWGFRQRPYPPGRPIDVAQAVGYKRLEKRYYDFIMRSGGWYYKDRIGRTRGPCELIQLKTAWGAGIIDKYTFIWGDDLDEWVPIGMIYGMERAVATWEVRLGAAATAFIHKLQKGIPPWVPLKGFEKKSRKQLQDEAYESKKRDLAVLEANDGIWPGVRIPSHALFLWASGSELTSILEQDHMPNKYIPKDMRKQLQKAIPGLRPWEVLSVEQAMDQITYNGQWYREPLGA 436
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7PFE4 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 682.559 bits (1760), Expect = 0.000e+0
Identity = 326/436 (74.77%), Postives = 376/436 (86.24%), Query Frame = 0
Match: A0A6S7PFE4 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 682.559 bits (1760), Expect = 0.000e+0
Identity = 326/436 (74.77%), Postives = 376/436 (86.24%), Query Frame = 0
Query: 1 MASINFNPFGENWFKKPPNPFQPIT--PFFDSLNPFKPQPKS-PL---FASITASNP----DTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEARGLKKHLKRLNAPKHWMLDKLG 425
MASINFNPFGENWFKKPPNP Q I F DS+NPFK QP+S P FA+++ SNP PD + KPG Y+++L+QFYWE ENRPD+RH PE++R++NEDP+ EKKENPTQEEIEENE+W EFR SPVV+FLA+AE++ D +NEMELKEN P+R EDKKYW+ +PHVIG DGRPMPRKA+ T++E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQAIGYKRLEKRYYDFIM++GG+FYKDR+GRTRGP ELIQLKTAWGAGIIDK+TF+WG+DMDEW PIGMIYGMERA+ATWEVRLGAAATAF+HKLQKGIPPWAPLKGFEKKS KQLQDEAYESK+RDL VLEANDG+WPGVRIPSHALFLWASGSELTSILE DHMPNKYIPKD+R QL KAIPGLRPWE +++ + ++ W + LG
Sbjct: 1 MASINFNPFGENWFKKPPNPLQSINIHAFSDSINPFKHQPQSDPFSSPFAALSISNPFKKKTEPDSQRPKPGYYKRLLEQFYWESENRPDYRHTPEVERILNEDPIWEKKENPTQEEIEENERWLKEFRESPVVRFLARAEEVMDEINEMELKENSKPYRSEDKKYWQSIPHVIGPDGRPMPRKAIKTRKESDDKFWDFAKQFFFGLWGFRQRPYPPGRPIDVAQAIGYKRLEKRYYDFIMRSGGFFYKDRIGRTRGPCELIQLKTAWGAGIIDKYTFIWGDDMDEWVPIGMIYGMERAIATWEVRLGAAATAFIHKLQKGIPPWAPLKGFEKKSRKQLQDEAYESKKRDLAVLEANDGIWPGVRIPSHALFLWASGSELTSILEQDHMPNKYIPKDMRKQLQKAIPGLRPWEVLSVEQAMDQITYGGEWYREPLG 436
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6LQI8 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 323/436 (74.08%), Postives = 375/436 (86.01%), Query Frame = 0
Match: A0A2J6LQI8 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 323/436 (74.08%), Postives = 375/436 (86.01%), Query Frame = 0
Query: 1 MASINFNPFGENWFKKPPNPFQPIT--PFFDSLNPFKPQPKS----PLFASITASNP----DTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEARGLKKHLKRLNAPKHWMLDKLG 425
MASINFNPFGENWFKKPPNP Q I F DS+NPFK QP+S FA+++ SNP PD + KPG Y+++L+QFYWE ENRPD+RH PE++R++NEDP+ EKKEN TQEEIEENE+W EFR SPVV+FLA+AE++ D +NEMELKEN P+R+EDKKYW+ +PHVIG DGRPMPRKA+ T++E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQAIGYKRLEKRYYDFIM++GG+FYKDR+GRTRGP ELIQLKTAWGAGIIDK+TF+WG+DMDEWAPIGMIYGMERA+ATWEVRLGAAATAF+HKLQKGIPPW PLKGFEKKS KQLQDEAYESK+RDL VLEAN+G+WPGVRIPSHALFLWASGSELTSILE DHMPNKYIPKD+R QL KAIPGLRPWE +++ + ++ W + LG
Sbjct: 1 MASINFNPFGENWFKKPPNPLQSINIHAFADSINPFKHQPQSDPSSSPFAALSISNPFKKKTEPDSQRPKPGYYKRLLEQFYWESENRPDYRHTPEVERILNEDPIWEKKENLTQEEIEENERWLKEFRESPVVRFLARAEEVMDEINEMELKENSKPYRREDKKYWQSIPHVIGPDGRPMPRKAIKTRKESDDKFWDFAKQFFFGLWGFRQRPYPPGRPIDVAQAIGYKRLEKRYYDFIMRSGGFFYKDRIGRTRGPCELIQLKTAWGAGIIDKYTFIWGDDMDEWAPIGMIYGMERAIATWEVRLGAAATAFIHKLQKGIPPWVPLKGFEKKSRKQLQDEAYESKKRDLAVLEANNGIWPGVRIPSHALFLWASGSELTSILEQDHMPNKYIPKDMRKQLQKAIPGLRPWEVLSVEQAMDQITYGGQWYREPLG 436
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T208 ((protein TIC 56, chloroplastic {ECO:0000313|RefSeq:XP_011077527.2}))
HSP 1 Score: 678.322 bits (1749), Expect = 0.000e+0
Identity = 334/455 (73.41%), Postives = 383/455 (84.18%), Query Frame = 0
Match: A0A6I9T208 ((protein TIC 56, chloroplastic {ECO:0000313|RefSeq:XP_011077527.2}))
HSP 1 Score: 678.322 bits (1749), Expect = 0.000e+0
Identity = 334/455 (73.41%), Postives = 383/455 (84.18%), Query Frame = 0
Query: 1 MASINFNPFGENWF-KKPPNPFQPITPFFDSLNPFKPQPKSPLFASIT---ASNPDTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILR 450
MASINFNPF +NWF +P PF+PI S+ FKP K+ FASIT + P T DP+E PGKYRQMLDQFYWECEN PD+RH PE++R++ EDP+ EKKENPTQEEIEENEKWW+EFRSSPVVQFLA+AE+IAD LNE+EL++N P+RKEDKK W+ VP+VIGLDGRPMPRKA+ + E+D+KFWDF +QFFFGLWGF+QRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTF+WG+DMDEWAPIGMIYGMERA+ATWEVRLGAAATAFLHKLQKGIPPW PLKG E K+YKQLQ+EAYESK+RDL VLEAN+GVWPGVRIPSHALFLWASGSELTS+LE DHMPNK+IPKDLRLQLA+ IPGLRPWE +++ + ++ W + L G++ P +R+ L L I R
Sbjct: 58 MASINFNPFNDNWFGNRPKLPFRPIH-LLSSI--FKPHSKNSSFASITNPFSRKPKT-DPDET-PGKYRQMLDQFYWECENLPDYRHTPEVERILQEDPIAEKKENPTQEEIEENEKWWAEFRSSPVVQFLARAEEIADKLNEIELRQNSVPYRKEDKKLWQAVPNVIGLDGRPMPRKAIKSDAESDDKFWDFARQFFFGLWGFRQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFIWGDDMDEWAPIGMIYGMERAIATWEVRLGAAATAFLHKLQKGIPPWVPLKGHEDKTYKQLQEEAYESKKRDLAVLEANNGVWPGVRIPSHALFLWASGSELTSLLEEDHMPNKFIPKDLRLQLAQIIPGLRPWEVLSIEQAMDQITYGGEWYREPL-GSYTTGPPYIRAWNRDVLRLFEIFR 506
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HZQ0 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 672.544 bits (1734), Expect = 0.000e+0
Identity = 324/430 (75.35%), Postives = 363/430 (84.42%), Query Frame = 0
Match: A0A2G9HZQ0 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 672.544 bits (1734), Expect = 0.000e+0
Identity = 324/430 (75.35%), Postives = 363/430 (84.42%), Query Frame = 0
Query: 1 MASINFNPFGENWFKKPPN-PFQPITPFFDSLNPFKPQPKSPLFASITASNPDTPDPE---EKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKA-LTQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEARGLKKHLKRLNAPKHWMLDKLG 425
MASINFNPF ENWF+ PP FQPI S+ FKP K+P FASI+ + P PE E KPGKYRQMLDQFYWE EN PD+RH PE++R++ +DP+ EKKENPTQEEIEENEKWW++FR+SPVVQF+ A +I D LNE+EL+EN TP+R ED+K W+ VPHVIGLDGRPMPRKA LT E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQAIGYKRLE+RYYDFIMKT GW+YKDRLGRTRGPMELIQLKTAWGAGIIDK TF+WG+DMDEWAPI MIYGMERA+ATWEVRLGAAATAFLHKLQKGIPPW PLKG E K+YKQLQ+EAYESKRRDL VLEANDGVWPGVRIP HALFLWASGSELTSILE DHMPNKYIPKD+RLQLAK IPGLRPWE +++ + R+ W + LG
Sbjct: 1 MASINFNPFNENWFRNPPKVTFQPIN-ILSSV--FKPHSKTPNFASISNTFSRKPKPEPETEGKPGKYRQMLDQFYWESENLPDYRHTPEVERILQDDPVAEKKENPTQEEIEENEKWWAQFRASPVVQFMNLALQIGDKLNELELQENSTPYRSEDEKLWQAVPHVIGLDGRPMPRKAILTHEESDDKFWDFVKQFFFGLWGFRQRPYPPGRPIDVAQAIGYKRLERRYYDFIMKTSGWYYKDRLGRTRGPMELIQLKTAWGAGIIDKDTFIWGDDMDEWAPISMIYGMERAIATWEVRLGAAATAFLHKLQKGIPPWVPLKGHETKTYKQLQEEAYESKRRDLAVLEANDGVWPGVRIPGHALFLWASGSELTSILEEDHMPNKYIPKDIRLQLAKIIPGLRPWEVLSVEQAMDRITFGGKWYREPLG 427
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9I9A5 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0
Identity = 324/430 (75.35%), Postives = 362/430 (84.19%), Query Frame = 0
Match: A0A2G9I9A5 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0
Identity = 324/430 (75.35%), Postives = 362/430 (84.19%), Query Frame = 0
Query: 1 MASINFNPFGENWFKKPPN-PFQPITPFFDSLNPFKPQPKSPLFASITASNPDTPDPE---EKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKA-LTQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEARGLKKHLKRLNAPKHWMLDKLG 425
MASINFNPF ENWF+ PP FQPI S+ FKP K+P FASI+ P PE E KPGKYRQMLDQFYWE EN PD+RH PE++R++ +DP+ EKKENPTQEEIEENEKWW++FR+SPVVQF+ A +I D LNE+EL+EN TP+R ED+K W+ VPHVIGLDGRPMPRKA LT E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQAIGYKRLE+RYYDFIMKT GW+YKDRLGRTRGPMELIQLKTAWGAGIIDK TF+WG+DMDEWAPI MIYGMERA+ATWEVRLGAAATAFLHKLQKGIPPW PLKG E K+YKQLQ+EAYESKRRDL VLEANDGVWPGVRIP HALFLWASGSELTSILE DHMPNKYIPKD+RLQLAK IPGLRPWE +++ + R+ W + LG
Sbjct: 1 MASINFNPFNENWFRNPPKVTFQPIN-ILSSV--FKPHSKTPNFASISNPFSRKPKPEPETEGKPGKYRQMLDQFYWESENLPDYRHTPEVERILQDDPVAEKKENPTQEEIEENEKWWAQFRASPVVQFMNLALQIGDKLNELELQENSTPYRSEDEKLWQAVPHVIGLDGRPMPRKAILTHEESDDKFWDFVKQFFFGLWGFRQRPYPPGRPIDVAQAIGYKRLERRYYDFIMKTSGWYYKDRLGRTRGPMELIQLKTAWGAGIIDKDTFIWGDDMDEWAPISMIYGMERAIATWEVRLGAAATAFLHKLQKGIPPWVPLKGHETKTYKQLQEEAYESKRRDLAVLEANDGVWPGVRIPGHALFLWASGSELTSILEEDHMPNKYIPKDIRLQLAKIIPGLRPWEVLSVEQAMDRITFGGKWYREPLG 427
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D9A6Z3 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 659.448 bits (1700), Expect = 0.000e+0
Identity = 315/453 (69.54%), Postives = 376/453 (83.00%), Query Frame = 0
Match: A0A4D9A6Z3 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 659.448 bits (1700), Expect = 0.000e+0
Identity = 315/453 (69.54%), Postives = 376/453 (83.00%), Query Frame = 0
Query: 1 MASINFNPFGENWFKKPPNPFQPITPFFDSLNPFKPQPKSPLFASITASNPDTPDPE-EKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRN 451
MASINFNPFG+NWFK PP P SL FKPQ ++P FA+I+ P PE ++KPGKY QML+QFYWECEN PD+RH PE+++++ EDP+VEKKENPTQEEIEENE WW+EF+SSPVVQFL +AE+IAD +NE+EL+EN P++KEDKKYW+ VP+VIGLDGRPMPRKA+ T++E+D+KFWDF +QFFFGLWGF+QRPYPPGRPID AQAIGYK LE+RYYDFIMKTGGW+YKDRLGR+RGPMELIQLKTAWGAGIIDK TF+WG+D+DEWAPI M+YG+ERA+ATWEVRLGAAATA +HKLQKGI PW PLKG EKK+YKQLQDEAYESKRRDL VLEAN+GVWPGVRIPSHALFLWASGSE+T++LE DHMPNKYIPKDLR +LAK IPGLRPWE +++ ++ + W L G++ P +++ + L I N
Sbjct: 1 MASINFNPFGDNWFKSPPKFPIPSINLVSSL--FKPQGRTPNFAAISNPFPKKAQPEADEKPGKYTQMLEQFYWECENLPDYRHRPEVEKILQEDPIVEKKENPTQEEIEENELWWAEFQSSPVVQFLTRAEEIADKINELELQENSVPYKKEDKKYWQAVPNVIGLDGRPMPRKAIKTRQESDDKFWDFARQFFFGLWGFRQRPYPPGRPIDVAQAIGYKALERRYYDFIMKTGGWYYKDRLGRSRGPMELIQLKTAWGAGIIDKDTFIWGDDLDEWAPISMVYGLERAIATWEVRLGAAATAAIHKLQKGIRPWVPLKGHEKKTYKQLQDEAYESKRRDLAVLEANNGVWPGVRIPSHALFLWASGSEMTTLLEEDHMPNKYIPKDLRRELAKVIPGLRPWEVLSIEQAMEHIVFGGKWHRVPL-GSYTTGPPYIAEWNKDVMRLFEIFHN 450
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022QDC4 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 309/434 (71.20%), Postives = 367/434 (84.56%), Query Frame = 0
Match: A0A022QDC4 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 309/434 (71.20%), Postives = 367/434 (84.56%), Query Frame = 0
Query: 1 MASINFNPFGENWFKKPPN-PFQPITPFFDSLNPF---KPQPKSPLFASITASNPDTPDPE---EKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEARGLKKHLKRLNAPKHWMLDKLGG 426
MASINFNPF +NWF+ PP PFQ + L+ F P ++P FASI SNP + P +KKPGKYRQMLDQFYWECEN PD+RH PE++R++ EDP+ EKKENPTQEEIEENE+WW++FRS+PVVQFL +AE+IAD LNE+EL+EN P+RKEDKK W+ VP+++GLDGRPMPRKA+ T+RE+D+KFWDF +QFFFGLWGF+QRPYPPGRPID +QAIGYK+LE RYYDF+M++GGWFYKDRLGR+RGPMELIQLKTAWGAGIIDKHTF+WG+D+DEWAPI M+YGMERA+ATWEVRLGAAATA LHKLQKGI PW PLKG E K+YKQ+Q+EAYESKRRDL VLEANDGVWPG+R PSHALFLWASGSELT++LE DHMPNK+IPKDLR+QL K IPGLRPWE +++ + R+ W + LG
Sbjct: 1 MASINFNPFNDNWFRNPPKLPFQIQIQSINLLSSFFNPAPSSQTPNFASI--SNPFSKKPNSDPDKKPGKYRQMLDQFYWECENLPDYRHAPEVERILQEDPIAEKKENPTQEEIEENEQWWADFRSNPVVQFLTRAEEIADKLNEIELQENSVPYRKEDKKLWQAVPNIMGLDGRPMPRKAIKTKRESDDKFWDFARQFFFGLWGFRQRPYPPGRPIDVSQAIGYKKLENRYYDFVMRSGGWFYKDRLGRSRGPMELIQLKTAWGAGIIDKHTFIWGDDLDEWAPISMVYGMERAIATWEVRLGAAATACLHKLQKGIAPWVPLKGHEVKTYKQVQEEAYESKRRDLAVLEANDGVWPGMRTPSHALFLWASGSELTTLLEEDHMPNKFIPKDLRVQLQKVIPGLRPWEVLSIEQAMDRITYGGKWYREPLGS 432
BLAST of DCAR_018674 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z7BYT2 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 657.907 bits (1696), Expect = 0.000e+0
Identity = 314/456 (68.86%), Postives = 378/456 (82.89%), Query Frame = 0
Match: A0A2Z7BYT2 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})
HSP 1 Score: 657.907 bits (1696), Expect = 0.000e+0
Identity = 314/456 (68.86%), Postives = 378/456 (82.89%), Query Frame = 0
Query: 1 MASINFNPFGENWFKKPPN-PFQPITPFFDSLNPFKPQPKSPLFASITASNPDTPDPE---EKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRN 451
MASINFNPFGENWFK PP PFQPI+ L+ FKPQ K+P FA+I SNP + PE ++ PGK+R+MLDQFYWECENRPD+RH PE+++++N+DP+ +K+E+ T EEI ENEKWW+EFR++PVVQF+ +AE+I+D LNEMEL+EN P+R+EDKK W+ VP+VIGLDGRPMPRKA+ + RE+D+KFWDF +QF FGLWGF+QRPYPPGRPID AQAIGYK LE+RYYDFIM++GGW+YKDRLGRTRGP ELIQLKTAWGAGIIDKHTF+WGEDMDEWAPI M+YGMERA+ATWEVRLGAAATAFLHKLQKGIPPW PLKG E K+YKQ+Q EAYESK+RDL VLEANDGVWPG+R PSHALFLWA GSELT++LE DHMPNKYIPKDLR++LAK IPGLRPWE +++ + + W + L G+F P +++ + L I N
Sbjct: 1 MASINFNPFGENWFKNPPKVPFQPIS----ILSLFKPQGKTPNFAAI--SNPFSRKPEVEPDENPGKHRKMLDQFYWECENRPDYRHAPEVEKILNDDPVFDKREDATPEEIAENEKWWAEFRANPVVQFMTRAEEISDKLNEMELQENSVPYRREDKKLWQAVPNVIGLDGRPMPRKAIQSDRESDDKFWDFMRQFLFGLWGFRQRPYPPGRPIDVAQAIGYKNLERRYYDFIMRSGGWYYKDRLGRTRGPSELIQLKTAWGAGIIDKHTFIWGEDMDEWAPISMVYGMERAIATWEVRLGAAATAFLHKLQKGIPPWVPLKGHENKTYKQVQKEAYESKQRDLAVLEANDGVWPGMRTPSHALFLWAGGSELTTLLEEDHMPNKYIPKDLRIELAKVIPGLRPWEVLSVEQAMDHITYGGEWHREPL-GSFTTGPPYIAEWNKDVMKLFEIFHN 449
| Match Name | Stats | Description |
|---|---|---|
| A0A5N6PFX3 | E-Value: 0.000e+0, PID: 75.11 | GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A251TGY7 | E-Value: 0.000e+0, PID: 74.37 | GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A6S7PFE4 | E-Value: 0.000e+0, PID: 74.77 | GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A2J6LQI8 | E-Value: 0.000e+0, PID: 74.08 | GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A6I9T208 | E-Value: 0.000e+0, PID: 73.41 | (protein TIC 56, chloroplastic {ECO:0000313|RefSeq... [more] |
| A0A2G9HZQ0 | E-Value: 0.000e+0, PID: 75.35 | GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A2G9I9A5 | E-Value: 0.000e+0, PID: 75.35 | GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A4D9A6Z3 | E-Value: 0.000e+0, PID: 69.54 | GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A022QDC4 | E-Value: 0.000e+0, PID: 71.20 | GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A2Z7BYT2 | E-Value: 0.000e+0, PID: 68.86 | GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more] |
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| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |