Resource Type:
Polypeptide
Name:
DCAR_019216
Identifier:
DCAR_019216.mRNA-protein
Sequence:
MEIDESSTAPRDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSV
MYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTLHQRLYRCYTTLNGFSF
DNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDY
GDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLL
KDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWN
TLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLL
ADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVC
LDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESILRDVRQTSNGK
RAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYN
ALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMG
AICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIG
TELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIM
DECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTSEPSHFRGHPSVWPYIV
TKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRE
NNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGD
PIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNI
IMEPSSVGSGSGDTTSGGLGTTYSKGELNLWRPSHILDFGNMSVGDPICD
LIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLA
MCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTGLT*
Sequence Length:
947
Sequence Checksum:
6e2096a31d3e43a61511f592f92f3e6d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_019216, derives from mRNA, DCAR_019216. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ALR7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA57607.1}))
HSP 1 Score: 1341.25 bits (3470), Expect = 0.000e+0
Identity = 658/984 (66.87%), Postives = 780/984 (79.27%), Query Frame = 0
Match: A0A5B7ALR7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA57607.1}))
HSP 1 Score: 1341.25 bits (3470), Expect = 0.000e+0
Identity = 658/984 (66.87%), Postives = 780/984 (79.27%), Query Frame = 0
Query: 1 MEID---ESSTAPRDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSVMYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTLHQ---------------------------RLYRCYTTLNGFSFDNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDYGDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWNTLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLLADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESILRDVRQTSNGKRAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYNALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMGAICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIGTELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIMDECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTS--EPSHFRGHPSVWPYIVTKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRENNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGDPIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNIIMEPSSVGSGS-GDTTSGGL-------GTTYSKGELNLWRPSHILDFGNMSVGDPICDLIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLAMCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTG 944
ME++ E+ PRDRR +ALGDLRVLPDET+C+IL LLSPRDVARLSCVSSVMYILCNEEPLWM+LCL+N+N LQYKGSWKKT L+Q RLYRCYT+LNGFSFDNGN+ERK DLSLEEFHH YD +KPVL+SGLA+TW A WT D+L+++YGD F+ISQRSS+K +++FRDY+SY QIQHDEDPLYIFDDKFGEV P LLKDY+VPHLFQED+FDVL+RD+RPPFRWLIIGPERSGASWHVDPALTSAWNTLL GRKRWALYPPGRVPLGVTVHVN++DGDV+++TP+SLQWWLDFYPLLADEEKPIECTQLPGETI+VPSGWWHCVLNLETTVAVTQNFVNSKNFE+VCLDMAPGYRHKG+CRAGLLAL+E +LE K+N L EES L T KR ++ E ++ N E A G+ + N EFSY+IN+LAMFLDKE+DHYN+LWSS NSIGQRELR WLW LWVGKPG RDLIWKGACLALNAGKWS C+G IC+FHEL FP+DDEKLPVGTGSNPVYLVADNVIK YVE GLEASLH++GTELEFYSLLC+ S LKNHIP VLASGI+ E G Y + PW+GKG+P+++ C+L + I ++VDFPFG+WS+KQFEYR AG S E G +WPYIVTKRCKGK+ ++L D + W D +NLASFLG+QLRNLHL+PFP L D + + N ++ TD IPAEW+ F+ TL +K+KD+ SRL WGDPIP LIE+V EYIP+DFE +LN+F+ G+ +VCR C+WIH+DIMDDNI MEP + S S +T GL G S GE + W PSHILDF ++S+GDP+CDLIP++LDVF+GD+RL+K+FLE+Y+LP + E + SKF R SYLAMCYCILH++NILGAIF +WKEL+M++SWE+VEE VWG+LN+YTG
Sbjct: 1 MEVEGSCEAQLGPRDRRPEALGDLRVLPDETICAILSLLSPRDVARLSCVSSVMYILCNEEPLWMSLCLDNVNGPLQYKGSWKKTALYQLHLPNEYEEPCIKPLHFDGFNSLFLYRRLYRCYTSLNGFSFDNGNLERK-DLSLEEFHHVYDGQKPVLLSGLADTWPARQTWTTDQLLLNYGDTAFKISQRSSRKITMRFRDYVSYMQIQHDEDPLYIFDDKFGEVTPCLLKDYNVPHLFQEDFFDVLDRDQRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNQEDGDVNVETPSSLQWWLDFYPLLADEEKPIECTQLPGETIFVPSGWWHCVLNLETTVAVTQNFVNSKNFEYVCLDMAPGYRHKGVCRAGLLALDEGSLEDAKKNRLCAEES-LSYSDLTRKEKRVRICEPAQDLNHENATNGSSESFNFRNQEFSYNINYLAMFLDKEKDHYNSLWSSSNSIGQRELRGWLWKLWVGKPGLRDLIWKGACLALNAGKWSECLGEICAFHELPFPTDDEKLPVGTGSNPVYLVADNVIKFYVEGGLEASLHALGTELEFYSLLCKINSPLKNHIPGVLASGILFLENGLYTIVPWDGKGVPEVIANCNL-IPEICKEVDFPFGVWSRKQFEYRKAGMSIYESDSSGGCSRIWPYIVTKRCKGKIFADLRDTLSWVDHLNLASFLGDQLRNLHLLPFPSLNDSTFSGIKQKIELPSGNGYMEAVTDKLRIPAEWEFFIRTLTRKKKDISSRLTKWGDPIPTNLIEKVDEYIPDDFEKLLNMFEDENGLRKVCRPCSWIHSDIMDDNIHMEPCRISSCSIANTPDAGLMDNGYVNGYNGSGGEKS-WHPSHILDFSDLSIGDPLCDLIPIHLDVFRGDTRLMKRFLENYKLPFVRRISHHESVESCSKFGRLSYLAMCYCILHEENILGAIFGLWKELKMAKSWEEVEETVWGDLNDYTG 980
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ACJ0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528300.1}))
HSP 1 Score: 1334.7 bits (3453), Expect = 0.000e+0
Identity = 658/984 (66.87%), Postives = 772/984 (78.46%), Query Frame = 0
Match: A0A5J5ACJ0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528300.1}))
HSP 1 Score: 1334.7 bits (3453), Expect = 0.000e+0
Identity = 658/984 (66.87%), Postives = 772/984 (78.46%), Query Frame = 0
Query: 1 MEIDESSTA---PRDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSVMYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTLHQ---------------------------RLYRCYTTLNGFSFDNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDYGDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWNTLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLLADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESILRDVRQTSNGKRAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYNALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMGAICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIGTELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIMDECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTS--EPSHFRGHPSVWPYIVTKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRENNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGDPIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNIIMEPSSVGSGS-GDTTSGGL-GTTYSKGELNL-----WRPSHILDFGNMSVGDPICDLIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLAMCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTGL 945
ME++E A PRDRR DALGDLRVLPDET+C+IL+ L+PRDVARLSCVSSVMYILCNEEPLWM+LCLNN+N LQYKGSWK+T LHQ R YRCYTTL+GFSF+NGNVERK+DLSLEEFH YD +KPVL+SGLA+TWSA H WT D+L+++YGD F+ISQRSS+K ++KFRDYISY QIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQED+FDVL+RD+RPPFRWLIIGPERSGASWHVDPALTSAWNTLL GRKRWALYPPGRVPLGV VHVNE+DGDV++DTP+SLQWWLDFYPLLAD++KPIECTQLPGETI+VPSGWWHCVLNLETTVAVTQNFVNS+NFEFVCLDM+PGYRHKG+CRAGLLAL+ + E K A E T KR ++ E ++ N E A+ GA +++ N EFSYDI+FLAMFLDKERDHYN+LWSSGN IGQRELR WLW LWV KPG RDLIWKGACLALNAGKWS C+G ICSFHEL FPSD E+LPVGTGSNPVYLVAD+VIK+YVE GLEASLH++GTELEFYSLLC+ S LKNHIPDVLASGI+ E GSY + PW+GKG+PD++ C+L +N ++VDFPFG+WSK+QFEYR AG S E + G +WP+I+TKRCKGK+ +EL D + WED +NLASFLGEQLRNLH++P P D + + N ++ TD IP EW+ F+ TL +K+KDV SRL WGDPIP LIE+V EYIP+DF +LN + G +VC+ C+WIH+DIMDDNI ME V S S G+T GL +Y G WRP HILDF ++S+ DPICD+IP++LDVF+GD RLLK+FLESY+LPL+ E + SKF R SYLAMCYCILH++NILGAIFS+WKELR+++SWE+VEE VWGELN+YTG
Sbjct: 1 MEVEEGCEAQLVPRDRRPDALGDLRVLPDETICAILVHLTPRDVARLSCVSSVMYILCNEEPLWMSLCLNNINGPLQYKGSWKQTALHQLQLPNEYEEPCRKPLHFDGFNSLFLYRRFYRCYTTLDGFSFENGNVERKKDLSLEEFHLVYDGQKPVLLSGLADTWSARHTWTTDQLLLNYGDTAFKISQRSSQKITMKFRDYISYVQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDFFDVLDRDQRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVIVHVNEEDGDVNVDTPSSLQWWLDFYPLLADKDKPIECTQLPGETIFVPSGWWHCVLNLETTVAVTQNFVNSRNFEFVCLDMSPGYRHKGVCRAGLLALDGGSFEDTKSCA----EDCSSYSDLTRKEKRVRLCEPAEDSNYENAKNGASESYNLSNQEFSYDISFLAMFLDKERDHYNSLWSSGNCIGQRELRGWLWKLWVSKPGQRDLIWKGACLALNAGKWSECVGEICSFHELPFPSDGERLPVGTGSNPVYLVADHVIKLYVEGGLEASLHALGTELEFYSLLCKVNSPLKNHIPDVLASGILSLENGSYSIVPWDGKGVPDVIANCNLIPEN-CKEVDFPFGVWSKQQFEYRKAGMSIHESDNPGGSSRIWPFIITKRCKGKIFAELRDTLSWEDLLNLASFLGEQLRNLHILPLPSSNDSRFSDIKQKIGLPCGNGFMEAVTDKPCIPVEWEFFIKTLTRKKKDVCSRLTKWGDPIPNTLIEKVDEYIPDDFGKLLNTIEGEDGPHKVCKPCSWIHSDIMDDNIHMETCCVNSCSIGNTPDAGLMDNSYVNGYNGTGGGKSWRPGHILDFSDLSISDPICDVIPIHLDVFRGDPRLLKRFLESYRLPLVRRIPYLESVESGSKFGRLSYLAMCYCILHEENILGAIFSLWKELRVAKSWEEVEETVWGELNDYTGF 979
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AP33 ((Uncharacterized protein {ECO:0000313|EMBL:MPA57606.1}))
HSP 1 Score: 1315.83 bits (3404), Expect = 0.000e+0
Identity = 649/981 (66.16%), Postives = 771/981 (78.59%), Query Frame = 0
Match: A0A5B7AP33 ((Uncharacterized protein {ECO:0000313|EMBL:MPA57606.1}))
HSP 1 Score: 1315.83 bits (3404), Expect = 0.000e+0
Identity = 649/981 (66.16%), Postives = 771/981 (78.59%), Query Frame = 0
Query: 1 MEIDESSTA---PRDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSVMYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTLHQ---------------------------RLYRCYTTLNGFSFDNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDYGDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWNTLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLLADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESILRDVRQTSNGKRAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYNALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMGAICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIGTELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIMDECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTSEPSHFRGHPSVWPYIVTKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRENNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGDPIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNIIMEPSSVGSGS-GDTTSGGL-GTTYSKGELNL-----WRPSHILDFGNMSVGDPICDLIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLAMCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTG 944
ME++E A PRDRR DALGDLRVLPD+T+C+IL+ L+PRDVARLSCVSSVMYILCNEEPLWM+LCLNN++ LQYKGSWK+TTLHQ RLYRCYTTL+GFSFDNGN+ERK+DLS EEFH YD +KPVL+SGLA++WSA H WT D+L+++YG+ F+ISQRSS+ ++KFRDY+SY QIQHDEDPLYIFDDKFGEVAPGLLKDY+VPHLFQED+FD LERD+RPPFRWLIIGPERSGASWHVDPALTSAWNTLL G KRWALYPPGRVPLGVTVH++E+DGDV+++TP+SLQWWLDFYPLLAD++KPIECTQLPGETI+VPSGWWHCVLNLETTVA+TQNFVNS+NFEFVCLDM+PGYRHKG+CRAGLLAL+ + E K A E L T R ++ E ++ N E A GA +++ N EFSYDINFLAMFLDKERDHYN+LWSSGN IGQRE R WLW LWVGKPG RDLIWKGACLALNA KWS C+G ICSFHEL P DDE+LPVGTGSNPVYLVAD+VIK YVE+GLEA LH++GTELEFYSLLC+ SSLKNHIP VLASGI+ E GSY + PW+GKG+P+++ C+ +N ++VDFPFG+WSK+Q E+R AG S G +WPYI+TKRCKGK+ +EL D + WED +NLASFLGEQLRNLHL+PFP L D + + N ++ TD IPAEW+ F+ TL +K+KDV SRL WGDPIP LIE+V EYIP DFE L++F+ KG+ +VC+ +WIH+DIMDDNI MEP V S S G+T GL Y G + WRPSHILDF ++S+GDPICDLIP++LDVF+GD LLK+FLESY+LPL+ E + + SKF + SYLAMCYCILH+DN+LGAIFS+WKELRM++SW++VEE VWG+LNNYTG
Sbjct: 1 MEVEEGYEAQLVPRDRRPDALGDLRVLPDDTICAILVHLTPRDVARLSCVSSVMYILCNEEPLWMSLCLNNVDGPLQYKGSWKQTTLHQLHLPNEYEEPCRKPLQFDGFNSLFLYRRLYRCYTTLDGFSFDNGNLERKKDLSFEEFHLVYDGQKPVLLSGLADSWSARHTWTTDQLLLNYGETKFKISQRSSQNITMKFRDYVSYIQIQHDEDPLYIFDDKFGEVAPGLLKDYNVPHLFQEDFFDALERDQRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGCKRWALYPPGRVPLGVTVHISEEDGDVNVETPSSLQWWLDFYPLLADKDKPIECTQLPGETIFVPSGWWHCVLNLETTVAITQNFVNSRNFEFVCLDMSPGYRHKGVCRAGLLALDRGSFEDAKNCA----EDGLSYSDITRKENRVRICEPAEDSNHENANNGASKSYNLSNQEFSYDINFLAMFLDKERDHYNSLWSSGNCIGQREFRGWLWKLWVGKPGLRDLIWKGACLALNASKWSECVGEICSFHELPLPIDDERLPVGTGSNPVYLVADHVIKFYVEEGLEACLHALGTELEFYSLLCKVDSSLKNHIPGVLASGILYLENGSYTIVPWDGKGVPNVIANCNWIPEN-CKEVDFPFGVWSKQQIEFRKAGMSISDSSGGSSRIWPYIITKRCKGKIFAELRDILSWEDLLNLASFLGEQLRNLHLLPFPSLNDSTFSAIKQKIELPCGNGFMEAVTDKPCIPAEWEFFIRTLTRKKKDVSSRLTKWGDPIPSTLIEKVDEYIPNDFEKFLSMFEDEKGLLKVCKPFSWIHSDIMDDNIHMEPCWVNSCSIGNTPDAGLMDDGYVNGYNGIGGGKSWRPSHILDFSDLSIGDPICDLIPIHLDVFRGDPCLLKRFLESYKLPLVRRISHHESVERGSKFGQLSYLAMCYCILHEDNVLGAIFSLWKELRMAKSWDEVEETVWGDLNNYTG 976
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HR38 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5955320.1}))
HSP 1 Score: 1300.42 bits (3364), Expect = 0.000e+0
Identity = 641/982 (65.27%), Postives = 759/982 (77.29%), Query Frame = 0
Match: A0A7J7HR38 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5955320.1}))
HSP 1 Score: 1300.42 bits (3364), Expect = 0.000e+0
Identity = 641/982 (65.27%), Postives = 759/982 (77.29%), Query Frame = 0
Query: 1 MEIDESSTAPRDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSVMYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTLHQ---------------------------RLYRCYTTLNGFSFDNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDYGDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWNTLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLLADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESILRDVRQTSNGKRAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYNALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMGAICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIGTELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIMDECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTS--EPSHFRGHPSVWPYIVTKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRENNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGDPIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNIIMEPSSVGSGSGDTTSGG--LGTTYSKG-----ELNLWRPSHILDFGNMSVGDPICDLIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLN-QDSKFYRTSYLAMCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTGL 945
+E E+ P+DRR DALGDLRVLPDE LC++L+ L+PRDVARLSCVSSVMYILCNEEPLWM+LCL+N+N QLQYKGSWKKT L Q R YRCYTTL GF+FD+GNVERK ++SLE+F E+DAKKPVL+SGLA+TW A WT D+L+++YGD F+ISQRSS+K S+KF+DY+SY QIQHDEDPLYIFDDKFGEV PGLLKDYSVPHLFQED+FDVL+RDKRP FRWLIIGPERSGASWHVDPALTSAWNTLL GRKRWALYPPGRVPLGVTVHVNE+DGDV+++TP+SLQWWLDFYPLLA+E+KPIECTQLPGETI+VPSGWWHCVLNLETTVAVTQNFVNS NFEFVCLDMAPGY+HKG+CRAGLLAL E + E K+ L E+S L D QT KR K E +EPNSE A H++ + EFSYDINFL MFLDK RDHYN+LWSS N IGQRE+REWLW LW+ KPG R+LIWKGACLALNA KWS C+ IC+FHEL FP+DDE+ PVG GSNPVYL+AD+VIK+YVEDGLE S +++GTELEFYSLLC+ S LKNHIP VLASGI+ E GSYK+ PW+GKG+P+++ C+L +N S +VDFPFG+WSKK FE + AG S E +WPYIVTKRC GK +EL + + WEDT+ LASFLGEQLRNLHL+PFP L + + E + + ++ T+ SIPAEW F+ TL +++KDV SRL WGDPIP LI++V EYIP+DF LNIF+ GK V + C+WIH+DIMDDNI MEP V S + TS + Y G E WRPSHILDF ++S+GDPICDLIP++LDVF+GD LLK+FLESY+LPL Q E ++ SKF R S++AMCYCILH+DNILG IFS+ KELRM++SWE+VEE VWG+LNNY+G
Sbjct: 3 VEYSETQCVPKDRRPDALGDLRVLPDEILCAMLVYLTPRDVARLSCVSSVMYILCNEEPLWMSLCLDNVNGQLQYKGSWKKTALDQLHLPSEYQETCINPMHFDGFNSLFLLRRHYRCYTTLAGFTFDSGNVERKNNISLEDFRQEFDAKKPVLLSGLADTWPARSTWTIDQLLLNYGDTEFKISQRSSRKISVKFKDYVSYMQIQHDEDPLYIFDDKFGEVVPGLLKDYSVPHLFQEDFFDVLDRDKRPAFRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGRVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLANEDKPIECTQLPGETIFVPSGWWHCVLNLETTVAVTQNFVNSANFEFVCLDMAPGYQHKGVCRAGLLALNEGSFEDSKKTTLSTEDS-LSDSDQTRKEKRIKFCEPVEEPNSENAVNSTSINHNLHDQEFSYDINFLEMFLDKGRDHYNSLWSSSNCIGQREMREWLWKLWIAKPGLRNLIWKGACLALNAEKWSECVREICTFHELPFPTDDERFPVGMGSNPVYLIADHVIKLYVEDGLEFSFNALGTELEFYSLLCKVDSPLKNHIPGVLASGILFIENGSYKIVPWDGKGVPNVIASCNLIPEN-SLEVDFPFGVWSKKNFEIKKAGMSINELISSGDGSRIWPYIVTKRCNGKTFAELRETLSWEDTLYLASFLGEQLRNLHLLPFPSLNASTLADAEEKMEYPCVSGSMEAVTNKLSIPAEWDFFIRTLTRRKKDVCSRLTKWGDPIPSFLIDKVDEYIPDDFPKFLNIFEDGK----VAKPCSWIHSDIMDDNIHMEPCCVSSCLTEHTSAADLMHNGYVNGKNGGAERTSWRPSHILDFSDLSIGDPICDLIPIHLDVFRGDPNLLKQFLESYRLPLARKISQHESVDGGGSKFGRLSFIAMCYCILHEDNILGTIFSLCKELRMAKSWEEVEETVWGDLNNYSGF 978
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q0C4 ((F-box protein {ECO:0000313|EMBL:PSR99866.1}))
HSP 1 Score: 1284.24 bits (3322), Expect = 0.000e+0
Identity = 630/983 (64.09%), Postives = 753/983 (76.60%), Query Frame = 0
Match: A0A2R6Q0C4 ((F-box protein {ECO:0000313|EMBL:PSR99866.1}))
HSP 1 Score: 1284.24 bits (3322), Expect = 0.000e+0
Identity = 630/983 (64.09%), Postives = 753/983 (76.60%), Query Frame = 0
Query: 1 MEIDESSTAPRDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSVMYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTLHQ---------------------------RLYRCYTTLNGFSFDNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDYGDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWNTLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLLADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESILRDVRQTSNGKRAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYNALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMGAICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIGTELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIMDECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTSEPSHFRGHPS--VWPYIVTKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPL-CDLFIRENNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGDPIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNIIMEPSSVGSGSGDTT--SGGLGTTY------SKGELNLWRPSHILDFGNMSVGDPICDLIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLAMCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTGL 945
+E ES AP+DRR DALGDLRVLPDE LC++L+ L+PRDVARLSCVSSVMYI+CNEEPLWM+LCL+NLN QL+Y GSWKKT L Q R YRCYTTL GFSFD+GNVER++DLSLE+F E+D KKPVL+SGLA+TW A H WT D+L++ YGD F+ISQ+S++K S+KF+DY+SY QIQHDEDPLYIFD+KFGEVAPGLL DY VPHLFQED+FD+L+R+KRP FRWLIIGPERSGASWHVDPALTSAWNTLL GRKRWALYPPGRVPLGVTVHVNE+DGDV+I+TP+SLQWWLDFYPLLADE+KPIECTQLPGETI+VPSGWWHCVLNLETTVAVTQNFVNS NFEFVCLDMAPGY+HKG+CRAGLLAL+E E K+ L + S L + T KR K E +EPNS A H+V + EFSYDINFL MFLDK RDHYN+LWSS N IGQRE+REWLW LWV KPG R+LIWKGACLALNAGKWS C+ IC+FH+L FP+DDE+LPVG GSNPVYL++D+ IK+YVE GLEASLH++G+ELEFY++LC+ S LKNHIP VLASGI+ E GSYK++PW+GKG+P+++D C+L + +VDFPFG+ SK+ FE+R AG +WPYIVTKRCKGK ++L D + WEDT+ LASFLGEQL NLHL+PFP L F E K S+ TD SIP EW F+ TL +++KDV SRL WGDPIP LI++V EYIP+DF LNIF+ GK V + C+WIH+DIMDDNI MEPS V + T + + +Y GE+ WRPSHILDF ++S+GDPICDLIP++LDVF+GD LLK+FL+SY+LPL Q ++ DSKF R SY+ MCYCILH++NILGAIFSIW+ELR ++SWE+VE+ VWG+LN Y+G
Sbjct: 3 IEYSESQCAPKDRRTDALGDLRVLPDEILCAVLVYLTPRDVARLSCVSSVMYIICNEEPLWMSLCLSNLNGQLKYTGSWKKTALDQLNLPNEYQETCIKPMHFDGFNSLFLLRRHYRCYTTLAGFSFDDGNVERRKDLSLEDFRREFDVKKPVLLSGLADTWPAKHTWTIDQLLLKYGDTAFKISQKSARKISMKFKDYVSYMQIQHDEDPLYIFDEKFGEVAPGLLNDYKVPHLFQEDYFDILDREKRPAFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEEDGDVNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIFVPSGWWHCVLNLETTVAVTQNFVNSTNFEFVCLDMAPGYQHKGVCRAGLLALDEGRYEDAKKVTLSAKVS-LSNSDLTRKEKRIKFCEPVEEPNSGKAATWTSISHNVHDQEFSYDINFLEMFLDKGRDHYNSLWSSSNCIGQREMREWLWKLWVEKPGLRNLIWKGACLALNAGKWSECITEICTFHKLSFPTDDERLPVGMGSNPVYLISDHAIKLYVEGGLEASLHALGSELEFYNMLCKVDSPLKNHIPGVLASGILFIENGSYKIEPWDGKGVPNVIDSCNL-IRKKCLEVDFPFGVGSKRHFEFRKAGIDISESISSSECSRIWPYIVTKRCKGKTFADLRDTLSWEDTLRLASFLGEQLHNLHLLPFPSLNASAFPYSEEEIKYLCGNGSV----TDKLSIPTEWDFFIRTLTRRKKDVSSRLTKWGDPIPSFLIDKVDEYIPDDFAKFLNIFEDGK----VGKPCSWIHSDIMDDNIHMEPSCVSHCPTEHTLDADAMHNSYVNGYHDGGGEVTSWRPSHILDFSDLSIGDPICDLIPIHLDVFRGDPNLLKRFLDSYRLPLARKISQHVSVDSDSKFGRLSYITMCYCILHEENILGAIFSIWRELRTAKSWEEVEDTVWGDLNKYSGF 975
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6R7E8 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8056929.1}))
HSP 1 Score: 1244.57 bits (3219), Expect = 0.000e+0
Identity = 604/977 (61.82%), Postives = 735/977 (75.23%), Query Frame = 0
Match: A0A5N6R7E8 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8056929.1}))
HSP 1 Score: 1244.57 bits (3219), Expect = 0.000e+0
Identity = 604/977 (61.82%), Postives = 735/977 (75.23%), Query Frame = 0
Query: 6 SSTAPRDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSVMYILCNEEPLWMALCLNNLNLQLQYKGSWKKTT---------------------------LHQRLYRCYTTLNGFSFDNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDYGDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWNTLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLLADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESILRDVRQTSNGKRAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYNALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMGAICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIGTELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIMDECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTS--EPSHFRGHPSVWPYIVTKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRENNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGDPIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNIIMEPSSV-------GSGSGDTTSGGLGTTYSKGELNLWRPSHILDFGNMSVGDPICDLIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLAMCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTGLT 946
+ PRDRR DALGDL+VLPDETLC+IL L+PRD+ARL+CVSSVMYILCNEEPLWM+LC LN LQYKGSWKKT L++RLYR +TTLNGFSFDNG VERK+DL+LEEF+H+YD KKP+L++GL +TW A H W D+L+++YGD FRISQRSS+K +KF+DY+SY ++QHDEDPLYIFDDKFGEVAPGLLKDY+VPHLFQED+FDVLERD+RPPFRWLIIGPERSGASWHVDPALTSAWNTLL GRKRWA YPPGRVPLG TVHVNE+DGDV+++TP+SLQWWLDFYPLLADE+KP+ECTQLPG+TI+VPSGWWHCVLNLETT+AVTQNFVNSKNFEF CLDMAPGYRHKG+CRAGLLALE+ + E ++ ++ + + KRA++ E G PN E A +++ FSYDINFL+MFLDKE+DHY WSSGN +GQRE+R+WL LWVGKPG R+LIWKGACLALNA KW C+ IC+FH L P+DDE+LPVGTGSNPVYL+ + VIKI+VE GLEAS++ +GTELEFY+LLC+ S LKN+IPDVLASGI+ E GSYKV W+GKG+PD++ + +L+ +N D ++PFG+WSKKQ EYR A S E G +WPYI+ KRCKGK+ ++L DR+ WEDT++LASFLGEQLRNLHL+P PP + + N ++ + IPAEW++F+ TL +K+K V SRL WGDPIP LIE+V EYIP+DF +LN+ + G+ +VC+ C+WIH+DIMDDNI ME V +G + G+ W PSHILDF ++S+GDPI DLIP+YLD+F+GD RLLK+FLESY+LP + K K R SYLAMCYCILHD+NILGAIF IW ELR ++SWE+VE AVWGELNNY G T
Sbjct: 7 QALGPRDRRTDALGDLQVLPDETLCAILEYLTPRDLARLACVSSVMYILCNEEPLWMSLCFKRLNGPLQYKGSWKKTARLLEQPLNEYEEPCRKPLHFDGFSSLFLYRRLYRSHTTLNGFSFDNGTVERKKDLTLEEFYHQYDGKKPLLLTGLTDTWPARHTWMIDQLLLNYGDTNFRISQRSSQKILMKFKDYVSYMKLQHDEDPLYIFDDKFGEVAPGLLKDYNVPHLFQEDFFDVLERDQRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWAFYPPGRVPLGATVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPVECTQLPGDTIFVPSGWWHCVLNLETTIAVTQNFVNSKNFEFACLDMAPGYRHKGVCRAGLLALEQGSFEDADDSLIYTDLA--------RKDKRARIQEPGDGPNHEKTTNSASRRYNMWKQGFSYDINFLSMFLDKEKDHYIHPWSSGNCMGQREMRDWLSKLWVGKPGSRELIWKGACLALNADKWLECLAEICAFHNLPSPTDDERLPVGTGSNPVYLMENTVIKIFVEGGLEASIYGLGTELEFYNLLCKVNSPLKNYIPDVLASGILYHENGSYKVVSWDGKGVPDVIAQSNLSPENCKVD-EYPFGVWSKKQLEYRKAAISIHESIGPAGCTRIWPYIIIKRCKGKIFAQLRDRLSWEDTLSLASFLGEQLRNLHLLPLPPFNHSIFSDIELKSQLPFTNGCMEAVLNNSKIPAEWEIFIRTLMRKKKGVSSRLSKWGDPIPNTLIEKVDEYIPDDFAKLLNVLEGENGLNKVCKPCSWIHSDIMDDNIYMESRLVSLCLSENAKDAGLEDDDSINGYDEGGKGKSWCPSHILDFSDLSLGDPIFDLIPIYLDIFRGDQRLLKQFLESYKLPFI-----KMPQEGGEKVGRLSYLAMCYCILHDENILGAIFDIWNELRTAKSWEEVELAVWGELNNYKGFT 969
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: E0CRN6 ((Uncharacterized protein {ECO:0000313|EMBL:CBI19190.3}))
HSP 1 Score: 1242.25 bits (3213), Expect = 0.000e+0
Identity = 609/978 (62.27%), Postives = 742/978 (75.87%), Query Frame = 0
Match: E0CRN6 ((Uncharacterized protein {ECO:0000313|EMBL:CBI19190.3}))
HSP 1 Score: 1242.25 bits (3213), Expect = 0.000e+0
Identity = 609/978 (62.27%), Postives = 742/978 (75.87%), Query Frame = 0
Query: 2 EIDESST-APRDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSVMYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTL---------------------------HQRLYRCYTTLNGFSFDNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDYGDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWNTLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLLADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESILRDVRQTSNGKRAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYNALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMGAICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIGTELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIMDECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTSEPSHFRGH--PSVWPYIVTKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRENNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGDPIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNIIMEPSSVGSG----SGDTTSGGLGTTYSKGELNLWRPSHILDFGNMSVGDPICDLIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLAMCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTGL 945
EI E+ T +DRR DALGDLR+LPDE + +IL RDV+RL+CVSSVMYILCNEEPLWM+LCLNN+ LQYKGSWKKT L ++RLYRC+TTL+GF+FDNG ER++DLSLE F HEYD KKPVL++GLA+TW A WT D+L+++YGD F+ISQRSS+K ++KF+DY+SY ++QHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQED+FDVL+RD+RPPFRWLIIGPERSGASWHVDPALTSAWNTLL GRKRWALYPPGRVP GVTVHVNE+DGDV+I+TPTSLQWWLDFYPLLADE+KPIECTQLPGETIYVPSGWWHCVLNLETT+AVTQNFVNSKNFEFVCLDMAPGY HKG+CRAG+LAL++ + E K +A ++ L T KR + + GK+P+++ AR GA +D+ N +F YDINFL++FLD+E+DHY++LWSS N IGQRE+REWL LWVGKPG R+LIWKGACLALNAGKW IC+FH L P+DDE+LPVGTGSNPVYL++D+V+K++VE GLEAS+HS+G ELEFYSLLC+ S LK+HIPDVLASGI+ + GSY + PW+GKG+PD++ +C+L D F FG+WSKK FEY+ AG S +WPYI+TKRCKGK+ + L D + +D +NLASFLGEQL NLH++P P L N+ + N +D IPAEW++F+ TL +KRKDV SRL WGDPIP L+E+V EY+P DF +LNIFQ G +V + C WIH+DIMDDNI MEP + S + D+ G G+ E WRP HILDF ++S+GDPI DLIP++LDVF+GD LLK+FLESY+LPL+ Q L D KF R SY AMCYCILH++N+LGAIFS+WKEL++++SWE+VEE VWGELNNY G
Sbjct: 3 EISETHTRGLKDRRADALGDLRLLPDEIILAILASFGARDVSRLACVSSVMYILCNEEPLWMSLCLNNVKDHLQYKGSWKKTALLQEHMPNGYIEPCEKPLHFDGFNSLFLYRRLYRCHTTLDGFTFDNGKAERRKDLSLEAFCHEYDGKKPVLLAGLADTWPARSTWTTDQLLMNYGDTAFKISQRSSRKITMKFKDYVSYMKVQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDFFDVLDRDQRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPTGVTVHVNEEDGDVNIETPTSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSKNFEFVCLDMAPGYHHKGVCRAGMLALDKGSFENGKIDAF-CDKDGLNHPDLTRKEKRVRTYQPGKDPDNQSARNGACKSYDLWNQDFYYDINFLSVFLDQEKDHYSSLWSSSNCIGQREMREWLCKLWVGKPGMRELIWKGACLALNAGKWLERTAQICTFHGLPPPTDDERLPVGTGSNPVYLISDSVVKLFVEGGLEASIHSLGAELEFYSLLCKVNSPLKDHIPDVLASGILFLDNGSYTIVPWDGKGVPDVIAKCNLVPAKCMED-GFSFGVWSKKDFEYKKAGASTYESISSAECAGIWPYIITKRCKGKIFARLRDTLPRDDVLNLASFLGEQLHNLHILPHPSL--------NDSIHLSLDNGFMDEISDKIGIPAEWEIFIRTLARKRKDVSSRLTKWGDPIPSSLMEKVDEYLPNDFAKLLNIFQDENGQDKVNKPCCWIHSDIMDDNIHMEPCRISSCLTTPATDSCLTGNGSADGCTEEVSWRPGHILDFSDLSIGDPIWDLIPIHLDVFRGDPCLLKQFLESYKLPLVRRTSQNG-LEHDDKFRRLSYHAMCYCILHEENVLGAIFSLWKELKVAKSWEEVEETVWGELNNYDGF 969
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3JI52 ((Uncharacterized protein {ECO:0000313|EMBL:OMO94483.1}))
HSP 1 Score: 1232.62 bits (3188), Expect = 0.000e+0
Identity = 601/978 (61.45%), Postives = 748/978 (76.48%), Query Frame = 0
Match: A0A1R3JI52 ((Uncharacterized protein {ECO:0000313|EMBL:OMO94483.1}))
HSP 1 Score: 1232.62 bits (3188), Expect = 0.000e+0
Identity = 601/978 (61.45%), Postives = 748/978 (76.48%), Query Frame = 0
Query: 4 DESSTAP-RDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSVMYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTLH---------------------------QRLYRCYTTLNGFSFDNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDYGDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWNTLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLLADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESI-LRDVRQTSNGKRAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYNALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMGAICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIGTELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIMDECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTSE--PSHFRGHPSVWPYIVTKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRENNEYKKDAHYNSI-FKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGDPIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNIIMEPSSVGSGSGD---TTSGGLGTTYSKGELNLWRPSHILDFGNMSVGDPICDLIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLAMCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTGLT 946
D+S P +DRR DALG+L+ LPDE +C+IL L+PRD+ARL+CVSSVMYI CNEEPLWM+LCL +N L+YKGSWKKT LH +RLYRC+TTL+ FSFD+GNVE+++DLS E+F EYD KPVL+SGLA+TW A + WT D+L++ YGD F+ SQR+ K S+KF+DYI+Y+++QHDEDPLYIFD+KFGE PGLLKDY+VP LFQED+FDVL++D RPPFRWLIIGPERSGASWHVDPALTSAWNTLL GRKRWALYPPGRVP+GVTVHVNE+DGDV+IDTP+SLQWWLDFYPLLADE+KPIECTQLPGETI+VPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGY HKG+CRAGLLAL+E LE +++N + +E+ D+ T KRA+ S+ + N + G +++ +F+YDINFLA FLD+ERDHY + WSSGN IG RE+R+WL LWVGKPG RDLIWKGACLALNA KW C+G IC FH L FP++DEKLPVGTGSNPVY++ + V+KI+VEDGLE+S+H +GTELEFYS LCE S LKNHIP+VLASGI+ E GSYK+ W+GK +PD++ +C+L + DV FPFG+W KK FEY+ AG+ E P G ++WPY++TKRC GK+ ++L D + WED +NL+SFLGEQLR+LHL+P+P + I + + + N + + E+D PAEWK F TL++K+KDV SRL WGDPIPK+LIE+V EY+P+DF +L++++ G+ V + C+WIH+DIMDDNI MEP S+ G T +G + + GE WRP+ ILDF ++S+GDPI D+IP+YLDVF+GDSRLLK+FLESY+LPLM + L+ D KF R SY MCYCILHD+NILGAIFSIW ELR ++SWE+VE+AVWGELNNY G
Sbjct: 5 DQSHAFPLKDRRADALGNLKSLPDEIICNILDCLTPRDIARLACVSSVMYIFCNEEPLWMSLCLKKINGSLEYKGSWKKTALHLENLPNEYVEDCRKPLQFDGFSSLFLYRRLYRCHTTLDSFSFDDGNVEKQKDLSAEQFSREYDGVKPVLLSGLADTWPARNTWTIDQLLLKYGDTAFKNSQRTPGKLSMKFKDYITYTKLQHDEDPLYIFDEKFGEKEPGLLKDYNVPQLFQEDFFDVLDKDSRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPMGVTVHVNEEDGDVNIDTPSSLQWWLDFYPLLADEDKPIECTQLPGETIFVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYCHKGVCRAGLLALDEGVLENIEKNMSNDKENFSYSDL--TRKEKRARKSQESE--NDKGISDGVSKSYNLWKQDFAYDINFLAKFLDRERDHYTSPWSSGNCIGPREMRDWLCKLWVGKPGMRDLIWKGACLALNADKWLECLGKICFFHNLPFPNEDEKLPVGTGSNPVYVMDEYVVKIFVEDGLESSIHGLGTELEFYSKLCEVRSPLKNHIPNVLASGILHLENGSYKIDTWDGKDVPDVIRKCNLGPQTGTNDV-FPFGLWGKKLFEYKKAGSPECVPQSTAGSTNIWPYLITKRCNGKIFAQLRDTLSWEDVLNLSSFLGEQLRHLHLLPYPSFSNSTISDVEQNGELPFANGMDIEYESD---FPAEWKFFARTLSRKKKDVSSRLNKWGDPIPKMLIEKVDEYLPDDFLKLLSVYEVN-GMKRVSKPCSWIHSDIMDDNIYMEPCSISCSDGVAPLTDNGSINGHNNGGEGKSWRPNFILDFSDLSIGDPIYDVIPIYLDVFRGDSRLLKRFLESYKLPLMRKTSEHGLMTGDDKFARLSYHTMCYCILHDENILGAIFSIWTELRTAESWEEVEQAVWGELNNYVGFA 973
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3K2F0 ((Uncharacterized protein {ECO:0000313|EMBL:OMP01257.1}))
HSP 1 Score: 1230.31 bits (3182), Expect = 0.000e+0
Identity = 601/975 (61.64%), Postives = 740/975 (75.90%), Query Frame = 0
Match: A0A1R3K2F0 ((Uncharacterized protein {ECO:0000313|EMBL:OMP01257.1}))
HSP 1 Score: 1230.31 bits (3182), Expect = 0.000e+0
Identity = 601/975 (61.64%), Postives = 740/975 (75.90%), Query Frame = 0
Query: 4 DESSTAP-RDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSVMYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTLH---------------------------QRLYRCYTTLNGFSFDNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDYGDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWNTLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLLADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESILRDVRQTSNGKRAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYNALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMGAICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIGTELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIMDECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTSE--PSHFRGHPSVWPYIVTKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRENNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGDPIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNIIMEPSSVGSGSG--DTTSGGLGTTYSKGELNLWRPSHILDFGNMSVGDPICDLIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLAMCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTGLT 946
D+S P +DRR DALG+L+ LPDE +C+IL L+PRD+ARL+CVSSVMYI CNEEPLWM+LCL +N L+YKGSWKKTTLH +RLYRC+TTL+ FSFD+GNVER +DLS E+F EYD KPVL+SGLA+TW A WT D+L++ YGD F+ISQR+ K S+KF+DYI+Y+++QHDEDPLYIFD+KFGE APGLLKDY+VP LFQED+FDVL++D RPPFRWLIIGPERSGASWHVDPALTSAWNTLL GRKRWALYPPGRVP+GVTVHVNE DGDV+IDTP+SLQWWLDFYPLLADE+KPIECTQLPGETI+VPSGWWHCVLNLETTVAVTQNFVNSKN EFVCLDMAPGY HKG+CRAGLLAL+E LE +++N + EE+ T KRA+ S+ + N E G +++ +F+YDINFLA F+D+ERDHY + WSSGN IG RE+R+WL LW+GKPG R+LIWKGACLALNA KW C+G IC FH L FP++DEKLPVGTGSNPVY++ + V+KI+VEDGLE+S+H +GTELEFYS LCE S LKNHIP+VLASGI+ E GSYK+ W+GK +PD++ +C+L + DV FPFG+W KK FEY+ AG+ E P G ++WPY++TKRCKGK+ ++L D + WED +NLASFLGEQLR+LHL+P+P + I + + + N + G PAEWK F+ TL+ K+KDV SRL WGDPIPK+LI +V EY+P+DF +L+I++ G+ V + C+WIH+DIMDDNI MEP S+ G T G ++ GE WRP+ ILDF ++S+GDPI D+IP+YLDVF+GDS LLK+FLESY+LPLM + L+ D KF R SY MCYCILHD+NILGAIFSIW EL+ ++SWE+VE+AVWGELNNY G
Sbjct: 5 DQSHAFPLKDRRADALGNLKSLPDEIICNILDYLTPRDIARLACVSSVMYIFCNEEPLWMSLCLKKVNGPLEYKGSWKKTTLHLENLPNEYVEYCRKPLQFDGFSSLFLYRRLYRCHTTLDSFSFDDGNVERPKDLSAEQFSCEYDGVKPVLLSGLADTWPARSTWTIDQLLLKYGDTAFKISQRTPGKLSMKFKDYITYTKLQHDEDPLYIFDEKFGEKAPGLLKDYNVPQLFQEDFFDVLDKDSRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPMGVTVHVNEGDGDVNIDTPSSLQWWLDFYPLLADEDKPIECTQLPGETIFVPSGWWHCVLNLETTVAVTQNFVNSKNLEFVCLDMAPGYCHKGVCRAGLLALDEGGLENIEKNMSNDEENFSYS-DLTRKEKRARKSQESE--NDEGNSDGVSKSYNLWKQDFAYDINFLATFIDRERDHYTSPWSSGNCIGPREMRDWLSKLWLGKPGMRELIWKGACLALNADKWLECLGKICFFHNLPFPNEDEKLPVGTGSNPVYVMDEYVVKIFVEDGLESSIHGLGTELEFYSKLCEVNSPLKNHIPNVLASGILHLENGSYKIDSWDGKDVPDVIRKCNLGPQRGTGDV-FPFGLWGKKLFEYKKAGSPECVPHSSAGSTNIWPYLITKRCKGKIFAQLRDTLSWEDVLNLASFLGEQLRHLHLLPYPSFSNSTISDVEQNGELPFANGM--DAEYGSDFPAEWKFFVRTLSLKKKDVSSRLNKWGDPIPKMLIAKVDEYLPDDFLKLLSIYEV-NGMKRVSKPCSWIHSDIMDDNIYMEPCSISCSDGVAPLTDNGSVNGHNNGEGKSWRPNFILDFSDLSIGDPIYDVIPIYLDVFRGDSCLLKRFLESYKLPLMRKTSEHGLMTGDDKFARLSYHTMCYCILHDENILGAIFSIWTELKTAESWEEVEQAVWGELNNYVGFA 972
BLAST of DCAR_019216 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A833X9M6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5456145.1}) (Fragment))
HSP 1 Score: 1226.85 bits (3173), Expect = 0.000e+0
Identity = 600/973 (61.66%), Postives = 734/973 (75.44%), Query Frame = 0
Match: A0A833X9M6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5456145.1}) (Fragment))
HSP 1 Score: 1226.85 bits (3173), Expect = 0.000e+0
Identity = 600/973 (61.66%), Postives = 734/973 (75.44%), Query Frame = 0
Query: 10 PRDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSVMYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTLH---------------------------QRLYRCYTTLNGFSFDNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDYGDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWNTLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLLADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVCLDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESI-LRDVRQTSNGKRAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYNALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMGAICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIGTELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIMDECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTS--EPSHFRGHPSVWPYIVTKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRENNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGDPIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNIIMEPSSVGSGSGDTTSGGLGTT------YSKGEL-NLWRPSHILDFGNMSVGDPICDLIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLAMCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTGL 945
PRDRR+DALGDLRVLPDET+C+IL L+PRD+ARL+CVSSVMYILCNEEPLWM LCL N LQY+GSWKKT LH +RLYR +T+L GFSFDNG VERK+DLS+EEF+H+YD KKPVL++GLA++W A WT D+ ++ YGD FRISQ+SS+K IKF+DY+SY ++QHDEDP+YIFDDKFGEVAPGLLKDYSVPHLFQED+FDVL+RD+RPPFRWLI+GPERSGASWH+DPALTSAWNTLL GRKRWALYPPGRVPLGVTVHVNE+DGDV+++TP+SLQWWLD YPLLADE+KP ECTQLPGETI+VPSGWWHCVLNLETT+AVTQNFVNS NFEF CLDMAPGYRHKG+CRAGLLAL+E + E EN + ++ D+ T KR +V + G +P+ E GA +++ FSYDINFL+MFLDK+RDHYN+ WSSGN +GQRE+REWL LWVG PG R+LIWKGACLALNA KW C+ IC+FH L P+DDE+LPVGTGSNPVYL+ D+V+KI+VE GLEAS++ +GTELEFY+L+ + S LK HIPDVLASGI+ E GSY V PW+GKG+PD++ + +L + D + FG+WSK+QFEYR A TS E G +WPYI+TKRCKGK+ ++L +R+ WEDT++LASFLGEQLR LHL+P PP L + + + + NS + + PAEW++F+ TL +K+KDV SRL WGDPIP LIE+V EYI +DF +L+I + GV +V C+WIH+DIMDDNI ME SV SG++ G Y G + + W PSHILDF ++S GDPI DLIP+YLD+F+GD LLK+FL SY+LPL + + D K R SYL MCYCILH++NILGAIF +WKELR ++SWE+VE AVWGELN Y G
Sbjct: 27 PRDRRLDALGDLRVLPDETICAILEYLTPRDIARLACVSSVMYILCNEEPLWMILCLKRPNGSLQYRGSWKKTALHLESLPNECEEPCRKPLHFDGFNSLFLYRRLYRSHTSLYGFSFDNGTVERKKDLSIEEFYHQYDGKKPVLLTGLADSWPARCTWTTDQFLLKYGDTTFRISQKSSQKILIKFKDYVSYMKLQHDEDPIYIFDDKFGEVAPGLLKDYSVPHLFQEDFFDVLDRDQRPPFRWLIVGPERSGASWHIDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEEDGDVNVETPSSLQWWLDIYPLLADEDKPFECTQLPGETIFVPSGWWHCVLNLETTIAVTQNFVNSTNFEFACLDMAPGYRHKGVCRAGLLALDEGSFEDADENMCYNDDDFSCSDL--TRKEKRVRVLKPGDDPSKERTTNGASKRYNLWKQGFSYDINFLSMFLDKDRDHYNSPWSSGNCMGQREMREWLSKLWVGNPGKRELIWKGACLALNADKWLECLAEICTFHNLPSPADDERLPVGTGSNPVYLIGDSVVKIFVEGGLEASMYGLGTELEFYNLVRKVNSHLKKHIPDVLASGILYLENGSYTVVPWDGKGVPDVIAKSNLIPEKCELD-GYAFGLWSKQQFEYRKAATSIHESISSAGCMMIWPYIITKRCKGKIFAQLRERLSWEDTLSLASFLGEQLRQLHLLPLPPFNYLIFPDIGKDLELTYTNSCMEVVPSKSNAPAEWEIFVRTLIRKKKDVTSRLSKWGDPIPNTLIEKVDEYILDDFSKLLDINEGKNGVNKVGNPCSWIHSDIMDDNIHMESRSVPLCSGESAKDAGGVDDGSKNGYDDGRMGDSWSPSHILDFSDLSSGDPILDLIPIYLDIFRGDQSLLKQFLNSYKLPLRRMPLHESVEGGD-KLGRLSYLVMCYCILHEENILGAIFGLWKELRTAKSWEEVELAVWGELNTYDGF 995
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7ALR7 | E-Value: 0.000e+0, PID: 66.87 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5760... [more] |
| A0A5J5ACJ0 | E-Value: 0.000e+0, PID: 66.87 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8528... [more] |
| A0A5B7AP33 | E-Value: 0.000e+0, PID: 66.16 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5760... [more] |
| A0A7J7HR38 | E-Value: 0.000e+0, PID: 65.27 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5955... [more] |
| A0A2R6Q0C4 | E-Value: 0.000e+0, PID: 64.09 | (F-box protein {ECO:0000313|EMBL:PSR99866.1})[more] |
| A0A5N6R7E8 | E-Value: 0.000e+0, PID: 61.82 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8056... [more] |
| E0CRN6 | E-Value: 0.000e+0, PID: 62.27 | (Uncharacterized protein {ECO:0000313|EMBL:CBI1919... [more] |
| A0A1R3JI52 | E-Value: 0.000e+0, PID: 61.45 | (Uncharacterized protein {ECO:0000313|EMBL:OMO9448... [more] |
| A0A1R3K2F0 | E-Value: 0.000e+0, PID: 61.64 | (Uncharacterized protein {ECO:0000313|EMBL:OMP0125... [more] |
| A0A833X9M6 | E-Value: 0.000e+0, PID: 61.66 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5456... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |