Resource Type:
Polypeptide
Name:
DCAR_021668
Identifier:
DCAR_021668.mRNA-protein
Sequence:
MAGMASGTKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIW
RSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADILTDA
KPFDNLFINKNDIVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMR
FYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVT
TLSDKLLGEGSGKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKP
LVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSSSSSCCVGMTSIPGAPVG
LKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLIC
TGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPE
DPFVNVWESDTGRQTNILACNPTGGLHSTTGGSAIAVNGCEIVTGSCTEG
QGIIHYRNFNYATSQVLAEENEGGSKFWGPQHCSDSYESDS*
Sequence Length:
492
Sequence Checksum:
9cf8a8ca06da152bb45f98c18dc58411
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_021668, derives from mRNA, DCAR_021668. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AIB8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8530330.1}))
HSP 1 Score: 657.907 bits (1696), Expect = 0.000e+0
Identity = 314/486 (64.61%), Postives = 392/486 (80.66%), Query Frame = 0
Match: A0A5J5AIB8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8530330.1}))
HSP 1 Score: 657.907 bits (1696), Expect = 0.000e+0
Identity = 314/486 (64.61%), Postives = 392/486 (80.66%), Query Frame = 0
Query: 6 SGTKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIWRSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADILTDAKPFDNLFINKNDIVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMRFYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVTTLSDKLLGEGSGKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKPLVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSSS-SSCCVGMTSIPGAPVGLKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLICTGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPEDPFVNVWESDTGRQTNILACNPTGGLHSTTGGSAIAVNGCEIVTGSCTEGQGIIHYRNFNYATSQVLAEENEGGSKFWGPQHCSDSYESD 490
S T +TD+ MDSL+ CAS+LNL+D+SN+++TCKYL ++AYSDSIW+ FR++WPQQ +S S+ S VRE Y+ R+ +QQFKF DP AD T+AKP+ ++F++KNDI+FSQG I+++KIDS L R L+TL DH++R++CMR +SL ETSLFRSE QRNE VLVTSSYDHSIRLWWKG CQRCFRGH+GPV+TLSD+LLG+GSGK+FASGG DGTVRLWSL +GKRGQHAL+ATL+GH KP+VLMSVAGHK SLLVS+SKDSK+RLWDT TSS++ SSCCVGMTS+PGAPVG+KCHESLL+VAAGSSV AIDLRTM+K F TP P L+SFEI+PSKSLICTGG+ AMLWD+R +T+K +P+ LDGH+G + LHMD YK+V+G P+D +VNVWE DTG +TN L+C + G ++G SA+AV G +IVT SC E G + +R+F A+ V ENE SKFWGPQ D+ ESD
Sbjct: 80 SSTTMTDLNMDSLVCCASYLNLKDVSNIAVTCKYLKTVAYSDSIWKKLFREQWPQQV-ASFSQTSGVREEYLARHTALQQFKFSDPLVADFYTNAKPYSHVFLDKNDIIFSQGAMIHMLKIDSLLNGRYSLVTLSDHNSRITCMRLFSLSETSLFRSEAQRNENVLVTSSYDHSIRLWWKGCCQRCFRGHNGPVSTLSDRLLGDGSGKIFASGGVDGTVRLWSLGSSGKRGQHALKATLFGHQKPVVLMSVAGHKPSLLVSISKDSKVRLWDTTTSSAARSSCCVGMTSVPGAPVGIKCHESLLYVAAGSSVYAIDLRTMQKAFCTPINQPQLYSFEIMPSKSLICTGGIGRAMLWDVRRSCDTLKAEPITDLDGHMGAITHLHMDPYKIVTGGPKDSYVNVWEVDTGTKTNSLSCF-SYGPSPSSGCSAMAVRGWQIVTASCGEELGHLRFRDFTNASYHVSLNENEFASKFWGPQPYDDTDESD 563
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PA37 ((F-box/WD repeat-containing protein {ECO:0000313|EMBL:PSR87657.1}))
HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 305/484 (63.02%), Postives = 380/484 (78.51%), Query Frame = 0
Match: A0A2R6PA37 ((F-box/WD repeat-containing protein {ECO:0000313|EMBL:PSR87657.1}))
HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 305/484 (63.02%), Postives = 380/484 (78.51%), Query Frame = 0
Query: 8 TKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIWRSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADILTDAKPFDNLFINKNDIVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMRFYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVTTLSDKLLGEGSGKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKPLVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSS-SSSCCVGMTSIPGAPVGLKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLICTGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPEDPFVNVWESDTGRQTNILACNPTGGLHSTTGGSAIAVNGCEIVTGSCTEGQGIIHYRNFNYATSQVLAEENEGGSKFWGPQHCSDSYESD 490
+ ITD+ MDSL+HCA +L+L+DIS+L+++CKYL +A SDSIW F R++WP+ S ++ SVREAY+ R+ VQQFKFVDP AD+ T+AKP+++LF+NKNDI+FSQG ++IM+ID+FL R +TL DH++R++CMR + L +TSLFRS+TQR+E VLVTSS DHSIRLWWKG+CQRCFRGH+GPV++LSDKLLG G+GK+FASGG D TVRLWSL+ +GKRGQHAL+ATLYGH KP+VLMSVAGHK SLLVS+SKDSK+R+WDT TSS+ SSCCVG TS+PGAPVG++CHESL++ AAGSSVVAIDLRTM+KVF+ L SFEI+PSK LIC GG + AMLWD+R SET K +P+ LDGH G V LHMD YK+V+G PED ++NVWE+DTG QTN L C S G SA+AVNGC+IVT SC E G+I YR+FN AT V + E+ SKFW Q S S E D
Sbjct: 6 SSITDLNMDSLVHCADYLSLRDISSLAMSCKYLGRVASSDSIWLRFSREQWPEYISSGFTQTLSVREAYLARHTAVQQFKFVDPLVADLYTEAKPYNHLFLNKNDIIFSQGSLVHIMRIDNFLSGRGSFVTLSDHNSRITCMRLFPLSDTSLFRSKTQRDENVLVTSSRDHSIRLWWKGSCQRCFRGHNGPVSSLSDKLLGNGNGKIFASGGVDATVRLWSLSSSGKRGQHALKATLYGHEKPVVLMSVAGHKISLLVSISKDSKVRVWDTTTSSAVRSSCCVGTTSVPGAPVGMRCHESLVYAAAGSSVVAIDLRTMQKVFTVAIQQGDLHSFEIIPSKFLICAGGTDRAMLWDVRKTSETPKAEPVAELDGHTGAVTHLHMDPYKIVTGGPEDSYINVWETDTGTQTNSLICCSPDISSSGPGCSAMAVNGCQIVTASCGEELGLIRYRDFNNATCHVSSNESGIASKFWEAQSYSHSDEVD 489
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067LL59 ((Uncharacterized protein {ECO:0000313|EMBL:KDP45480.1}))
HSP 1 Score: 628.246 bits (1619), Expect = 0.000e+0
Identity = 298/483 (61.70%), Postives = 379/483 (78.47%), Query Frame = 0
Match: A0A067LL59 ((Uncharacterized protein {ECO:0000313|EMBL:KDP45480.1}))
HSP 1 Score: 628.246 bits (1619), Expect = 0.000e+0
Identity = 298/483 (61.70%), Postives = 379/483 (78.47%), Query Frame = 0
Query: 7 GTKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIWRSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADILTDAKPFDNLFINKND-IVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMRFYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVTTLSDKLLGEGS-GKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKPLVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSS-SSSCCVGMTSIPGAPVGLKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLICTGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPEDPFVNVWESDTGRQTNILACNPTGGLHSTTGGSAIAVNGCEIVTGSCTEGQGIIHYRNFNYATSQVLAEENEGGSKFWGPQHCSDS 486
TKIT++ DSL HCA++L+LQD+SNL+++CK+L +AYSDSIW+ F++RWPQ+ +S +S REAY+ R+ + +FKFVDP +ADI TD+KPFD++ ++KND I+FSQG +I +KIDSFL ++ + TL DH+AR++CMR + +DETSL+RSE+Q E VLVTSS D SIRLWWKG+CQRCFRGH+GPV+TLSDKLLG+ S KV ASGG+DGTVRLWSL+ GKRGQHAL+AT YGH KP+ LMSVAGHK+SLLV+MSKDSK+R+WDTATSS+ SSCCVGMTS+ G PV +KCHESLL+VAAGSSVV +DLRTM+KV + Y P L+SF I+PSKSLICTGG AMLWD+R ET+K +P+ LDGH GP+ LHMD YK+V+ P DP+VNVWE+DTG QTN L C P +++G SA+AVNG +IVT + E GI+ +R+F A+ VL E+E SKFW PQ SDS
Sbjct: 25 ATKITELNEDSLAHCATYLSLQDLSNLAMSCKFLKRVAYSDSIWQHCFKERWPQEAAPILSHKSGAREAYLARHVAMHRFKFVDPLSADIYTDSKPFDHIILDKNDTIIFSQGSSIQTVKIDSFLNGKDSMTTLSDHNARITCMRLFLIDETSLYRSESQGEENVLVTSSCDRSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDSSSNKVLASGGEDGTVRLWSLSSRGKRGQHALKATFYGHEKPIRLMSVAGHKTSLLVTMSKDSKVRVWDTATSSAVRSSCCVGMTSLFGTPVDMKCHESLLYVAAGSSVVTVDLRTMQKVITAAIYQPKLYSFAIMPSKSLICTGGNGKAMLWDIRRNQETLKPEPIAELDGHTGPLTHLHMDPYKIVTSGPADPYVNVWEADTGIQTNSLICCPPEEAVASSGCSAMAVNGTQIVTTTSGEENGIVRFRDFFNASCPVLRHEDEHTSKFWDPQPYSDS 507
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SX65 ((Uncharacterized protein {ECO:0000313|EMBL:CBI22162.3}))
HSP 1 Score: 621.698 bits (1602), Expect = 0.000e+0
Identity = 300/490 (61.22%), Postives = 378/490 (77.14%), Query Frame = 0
Match: D7SX65 ((Uncharacterized protein {ECO:0000313|EMBL:CBI22162.3}))
HSP 1 Score: 621.698 bits (1602), Expect = 0.000e+0
Identity = 300/490 (61.22%), Postives = 378/490 (77.14%), Query Frame = 0
Query: 4 MASGTKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIWRSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADILTDAKPFDNLFINKN-DIVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMRFYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVTTLSDKLLGEGSGKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKPLVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSS-SSSCCVGMTSIPGAPVGLKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLICTGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPEDPFVNVWESDTGRQTNILACNPTGGLHSTTGGSAIAVNGCEIVTGSCTEGQGIIHYRNFNYATSQV-LAEENEGGSKFWGPQHCSDSYESD 490
M + T ITD+ DSL C +L+LQD+SN++++CK+L ++AYSDSIW+ +F + WP Q PS+ S+ S VRE+Y+ R ++QFKFVDP AA TDAKPF++L ++KN DI+FSQG I IMK+ S R+ ++TL DH+AR++CMR + L ETSLFRSETQR E VLVTSS DHSIRLWWKG+CQRCFRGH+GPV+TLSDKLLG+GSGKVFASGG+DGTVRLWSL+ +GKRGQ AL+ATLYGH KP+ LM+VAGHK+SLLV++SKDSK+R+WDT TSS+ SSCCVGMTS+ GAPV +KC+ESLLFVAAGSSV IDLRTM++V + ++SF+ILPSKSLICTGG AMLWD+R ET+K +P+ +DGH GPV LHMD YK+V+G PED VNVWE DTG QTN LAC+ G +S G SA+A +GC IVT SC G++ +R+F AT V + E++ SKFW PQ D+ SD
Sbjct: 1 METSTTITDLDADSLAECGRYLDLQDLSNMAMSCKFLKTVAYSDSIWQRWFSEHWPLQMPSTFSQASGVRESYLARRTALRQFKFVDPLAAQFHTDAKPFNHLLLDKNNDIIFSQGSVIQIMKMGSIFSGRDFVVTLNDHNARITCMRLFPLSETSLFRSETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDGTVRLWSLSSSGKRGQQALKATLYGHAKPVKLMTVAGHKTSLLVTISKDSKVRVWDTTTSSAVRSSCCVGMTSVLGAPVDMKCYESLLFVAAGSSVSTIDLRTMQRVITAAIGQHEVYSFDILPSKSLICTGGDGKAMLWDIRKSQETLKPEPVIEVDGHTGPVTLLHMDPYKIVTGGPEDDHVNVWELDTGTQTNTLACSSDEGPNSNPGCSAMAADGCRIVTASCGTEDGLVWFRDFTDATCPVSSSHEDKPASKFWDPQCYGDTENSD 490
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K1X4V3 ((Uncharacterized protein {ECO:0000313|EMBL:PNS95802.1}))
HSP 1 Score: 621.698 bits (1602), Expect = 0.000e+0
Identity = 300/485 (61.86%), Postives = 372/485 (76.70%), Query Frame = 0
Match: A0A2K1X4V3 ((Uncharacterized protein {ECO:0000313|EMBL:PNS95802.1}))
HSP 1 Score: 621.698 bits (1602), Expect = 0.000e+0
Identity = 300/485 (61.86%), Postives = 372/485 (76.70%), Query Frame = 0
Query: 5 ASGTKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIWRSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADI-LTDAKPFDNLFINKNDIVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMRFYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVTTLSDKLLGEGSGKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKPLVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSS-SSSCCVGMTSIPGAPVGLKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLICTGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPEDPFVNVWESDTGRQTNILACNPTGGLHSTT--GGSAIAVNGCEIVTGSCTEGQGIIHYRNFNYATSQVLAEENEGGSKFWGPQHCSD 485
A+ T+ITD+ DSL HCA++L+LQD+SNL+ TCK L +AYSD IW+ FR+ WP++ + + S +REAY+ R VQQFKFVDP AD+ +TDAKPFD++ ++KNDI FSQG + + IDSFL R+ + L DH+AR++CMR + L ETSLFRSETQR E VLVTSS DHSIRLWWKG+CQRCFRGH+GPV TLSDKLLG+GS KV ASGG+DGTVRLWSL+ +GKRGQHAL+ATLYGH KP+ LMSVAGH++SLL ++SKDSK+R+WDT TSS+ SSCCVGMTS+PGAPV +KC ESLL+VAAGSSVVAIDLRTM+KV + Y P L SF I+PSK LICTGG++ A LWD+R ET+K +P+ LDGH GPV LHMD YK+V+G PED ++NVWE+DTG QTN C P+ S++ G SA+AVNG IVT S E G++ +R+F AT V E+ SKFW PQ SD
Sbjct: 9 ATTTRITDLNEDSLAHCATYLSLQDLSNLATTCKSLKRVAYSDPIWQHCFREHWPRE----LLQTSGLREAYLKRRVAVQQFKFVDPLVADLYITDAKPFDHIILDKNDITFSQGSLVQMTNIDSFLNGRDGVTALSDHNARITCMRLFPLSETSLFRSETQRKENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVLTLSDKLLGDGSAKVLASGGEDGTVRLWSLSSSGKRGQHALKATLYGHEKPIKLMSVAGHRTSLLATISKDSKVRVWDTTTSSAVRSSCCVGMTSVPGAPVDVKCCESLLYVAAGSSVVAIDLRTMQKVITVAIYQPKLCSFAIVPSKPLICTGGIDKAKLWDIRINQETLKPEPVAELDGHTGPVTLLHMDPYKIVTGGPEDSYINVWETDTGAQTNSFICCPSDAASSSSGMGCSAMAVNGTRIVTASYGEEHGLVCFRDFFNATCAVSKREDVLASKFWDPQSYSD 489
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3N7G4E2 ((Uncharacterized protein {ECO:0000313|EMBL:RQP02070.1}))
HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 300/487 (61.60%), Postives = 373/487 (76.59%), Query Frame = 0
Match: A0A3N7G4E2 ((Uncharacterized protein {ECO:0000313|EMBL:RQP02070.1}))
HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 300/487 (61.60%), Postives = 373/487 (76.59%), Query Frame = 0
Query: 5 ASGTKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIWRSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADI-LTDAKPFDNLFINKNDIVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMRFYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVTTLSDKLLGEGSGKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKPLVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSS-SSSCCVGMTSIPGAPVGLKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLICTGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPEDPFVNVWESDTGRQTNILACNPTGGLHSTT--GGSAIAVNGCEIVTGSCTEGQGIIHYRNFNYATSQVLAEENEGGSKFWGPQHCSDSY 487
A+ T+ITD+ DSL HCA++L+LQD+SNL+ TCK L +AYSD IW+ FR+ WP++ + + S +REAY+ R VQQFKFVDP AD+ +TDAKPFD++ ++KNDI FSQG + + IDSFL R+ + L DH+AR++CMR + L ETSLFRSETQR E VLVTSS DHSIRLWWKG+CQRCFRGH+GPV TLSDKLLG+GS KV ASGG+DGTVRLWSL+ +GKRGQHAL+ATLYGH KP+ LMSVAGH++SLL ++SKDSK+R+WDT TSS+ SSCCVGMTS+PGAPV +KC ESLL+VAAGSSVVAIDLRTM+KV + Y P L SF I+PSK LICTGG++ A LWD+R ET+K +P+ LDGH GPV LHMD YK+V+G PED ++NVWE+DTG QTN C P+ S++ G SA+AVNG IVT S E G++ +R+F AT V E+ SKFW PQ SD +
Sbjct: 9 ATTTRITDLNEDSLAHCATYLSLQDLSNLATTCKSLKRVAYSDPIWQHCFREHWPRE----LLQTSGLREAYLKRRVAVQQFKFVDPLVADLYITDAKPFDHIILDKNDITFSQGSLVQMTNIDSFLNGRDGVTALSDHNARITCMRLFPLSETSLFRSETQRKENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVLTLSDKLLGDGSAKVLASGGEDGTVRLWSLSSSGKRGQHALKATLYGHEKPIKLMSVAGHRTSLLATISKDSKVRVWDTTTSSAVRSSCCVGMTSVPGAPVDVKCCESLLYVAAGSSVVAIDLRTMQKVITVAIYQPKLCSFAIVPSKPLICTGGIDKAKLWDIRINQETLKPEPVAELDGHTGPVTLLHMDPYKIVTGGPEDSYINVWETDTGAQTNSFICCPSDAASSSSGMGCSAMAVNGTRIVTASYGEEHGLVCFRDFFNATCAVSKREDVLASKFWDPQSYSDGH 491
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4FWC0 ((probable E3 ubiquitin ligase complex SCF subunit sconB isoform X2 {ECO:0000313|RefSeq:XP_018835947.1}))
HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 295/486 (60.70%), Postives = 374/486 (76.95%), Query Frame = 0
Match: A0A2I4FWC0 ((probable E3 ubiquitin ligase complex SCF subunit sconB isoform X2 {ECO:0000313|RefSeq:XP_018835947.1}))
HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 295/486 (60.70%), Postives = 374/486 (76.95%), Query Frame = 0
Query: 6 SGTKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIWRSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADILTDAKPFDNLFINKNDIVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMRFYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVTTLSDKLLGEGSGKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKPLVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSS-SSSCCVGMTSIPGAPVGLKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLICTGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPEDPFVNVWESDTGRQTNILACNPTGGLHSTTGGSAIAVNGCEIVTGSCTEGQGIIHYRNFNYATSQVLAEENEGGSKFWGPQHCSDSYESD 490
S TKITD+ +DSL HCA +LNLQD+SNL+++CKY +AYSDSIW +FR WP+Q SS S+ VREAY+ R +QQFKFVDPF AD+ T ++P+ ++ ++KND+VFSQG I +MKIDS L R+ + DH+AR++CMR +SLD TSLF+S+ NE +LVTSS DH+IRLWWKG+CQRCFRGH+GPV+ LSDKLLGE GKV ASGG+D TVRLWSLN NGKRGQ AL+ATLYGH KP+ LMSVAGHK+SLLV++SK+SK+R+WDTATSS+ SSCCVGMTS+PGAPV +KCHES+++VAAGSSV+AIDLRTM+KV + Y P+L+S EI+PSKSLICTGG S MLWD+R ET+ +P+ L+ H GPV FLHMD+YK+V+G PED +VNV E+DT QTN L C T +++G + +AVNG +IVT S E G+I +R+F A V+ ++ SKFW PQ SDS SD
Sbjct: 11 STTKITDVDVDSLAHCAGYLNLQDLSNLAMSCKYFKRVAYSDSIWLRWFRDSWPKQILSSSSQTLEVREAYMARRTALQQFKFVDPFVADLYTVSQPYSHIAMDKNDVVFSQGSMIGMMKIDSCLSGRQSFIMRSDHNARITCMRLFSLDGTSLFKSDAPGNENILVTSSCDHTIRLWWKGSCQRCFRGHNGPVSILSDKLLGEVGGKVLASGGEDATVRLWSLNSNGKRGQQALKATLYGHEKPVKLMSVAGHKTSLLVTISKNSKVRVWDTATSSAVRSSCCVGMTSVPGAPVKMKCHESMVYVAAGSSVIAIDLRTMQKVLTAAVYRPNLYSVEIMPSKSLICTGGNGSVMLWDIRRNQETLTPEPIVELESHTGPVTFLHMDQYKIVTGGPEDSYVNVLETDTFTQTNTLICCSTEQASTSSGCAGLAVNGYQIVTASYGEEHGLIRFRDFANAACPVVESGDDHASKFWDPQSYSDSGGSD 496
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V6A7H7 ((Vegetative incompatibility protein HET-E-1-like {ECO:0000313|EMBL:TKR98905.1}))
HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 299/482 (62.03%), Postives = 367/482 (76.14%), Query Frame = 0
Match: A0A4V6A7H7 ((Vegetative incompatibility protein HET-E-1-like {ECO:0000313|EMBL:TKR98905.1}))
HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 299/482 (62.03%), Postives = 367/482 (76.14%), Query Frame = 0
Query: 8 TKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIWRSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADI-LTDAKPFDNLFINKNDIVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMRFYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVTTLSDKLLGEGSGKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKPLVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSS-SSSCCVGMTSIPGAPVGLKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLICTGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPEDPFVNVWESDTGRQTNILACNPTGGLHSTT--GGSAIAVNGCEIVTGSCTEGQGIIHYRNFNYATSQVLAEENEGGSKFWGPQHCSD 485
T+ITD+ DSL HCA++L+LQD+SNL+ TCK L +AYSD IW+ FR+ WP + + + S +REAY+ R VQQFKFVDP A + +TDAKPFD++ ++KNDI FSQG + + IDSFL R+ L DH+AR++CMR + L ETSLFRSETQR E VLVTSS DHSIRLWWKG+CQRCFRGH+GPV TLSDKLLG+GS KV ASGG+DGTVRLWSL+ +GKRGQHAL+ATLYGH KP+ LMSVAGH++SLL S+SKDSK+R+WDT TSS+ SSCCVGMTS+PGAPV +KC ESLL+VAAGSSVVAIDLRTM+KV + Y P L SF I+PSK LICTGG++ A LWD+R ET+K +P+ LDGH GPV LHMD YK+V+G PED ++NVWE+DTG QTN C P+ S++ G SA+AVNG IVT S E G++ +R+F AT V E+ SKFW PQ SD
Sbjct: 12 TRITDLNEDSLAHCATYLSLQDLSNLATTCKSLKRVAYSDPIWQHCFREHWPHE----LLQTSGLREAYLKRRVAVQQFKFVDPLVAGLYITDAKPFDHIILDKNDITFSQGSLVQMKNIDSFLNGRDGFTALSDHNARITCMRLFPLSETSLFRSETQRKENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVLTLSDKLLGDGSAKVLASGGEDGTVRLWSLSSSGKRGQHALKATLYGHEKPIKLMSVAGHRTSLLASISKDSKVRVWDTTTSSAVRSSCCVGMTSVPGAPVDVKCCESLLYVAAGSSVVAIDLRTMQKVITVAIYQPKLCSFAIVPSKPLICTGGIDKAKLWDIRINQETLKPEPVAELDGHTGPVTLLHMDPYKIVTGGPEDSYINVWETDTGAQTNSFICCPSDAASSSSGMGCSAMAVNGTRIVTASHGEDHGLVCFRDFFNATCAVSKREDVLISKFWDPQSYSD 489
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5ACR8 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0
Identity = 298/490 (60.82%), Postives = 376/490 (76.73%), Query Frame = 0
Match: A5ACR8 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0
Identity = 298/490 (60.82%), Postives = 376/490 (76.73%), Query Frame = 0
Query: 4 MASGTKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIWRSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADILTDAKPFDNLFINKN-DIVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMRFYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVTTLSDKLLGEGSGKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKPLVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSS-SSSCCVGMTSIPGAPVGLKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLICTGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPEDPFVNVWESDTGRQTNILACNPTGGLHSTTGGSAIAVNGCEIVTGSCTEGQGIIHYRNFNYATSQV-LAEENEGGSKFWGPQHCSDSYESD 490
M + T ITD+ DSL +L+LQD+SN++++CK+L ++AYSDSIW+ +F + WP Q PS+ S+ S VRE+Y+ R ++QFKFVDP AA TDAKPF++L ++KN DI+FSQG I IMK+ S R+ ++TL DH+AR++CMR + L ETSLFRSETQR E VLVTSS DHSIRLWWKG+CQRCFRGH+GPV+TLSDKLLG+GSGKVFASGG+DGTVRLWSL+ +GKRGQ AL+ATLYGH KP+ LM+VAGHK+SLLV++SKDSK+R+WDT TSS+ SSCCVGMTS+ GAPV +KC+ESLLFVAAGSSV IDLRTM++V + ++SF+ILPSKSLICTGG AMLWD+R ET+K +P+ +DGH GPV LHMD YK+V+G PED VNVWE DTG QTN LAC+ G +S G SA+A +GC IVT SC G++ +R+F AT V + E++ SKFW P D+ SD
Sbjct: 1 METSTTITDLDADSLAEYGRYLDLQDLSNMAMSCKFLKTVAYSDSIWQRWFSEHWPLQMPSTFSQASGVRESYLARRTALRQFKFVDPLAAQFHTDAKPFNHLLLDKNNDIIFSQGSVIQIMKMGSIFSGRDFVVTLNDHNARITCMRLFPLSETSLFRSETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDGTVRLWSLSSSGKRGQQALKATLYGHAKPVKLMTVAGHKTSLLVTISKDSKVRVWDTTTSSAVRSSCCVGMTSVLGAPVDMKCYESLLFVAAGSSVSTIDLRTMQRVITAAIGQHEVYSFDILPSKSLICTGGDGKAMLWDIRKSQETLKPEPVIEVDGHTGPVTLLHMDPYKIVTGGPEDDHVNVWELDTGTQTNTLACSSDEGPNSNPGCSAMAADGCRIVTASCGTEDGLVWFRDFTDATCPVSSSHEDKPASKFWDPXCYGDTENSD 490
BLAST of DCAR_021668 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QYK1 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8021645.1}))
HSP 1 Score: 613.609 bits (1581), Expect = 0.000e+0
Identity = 293/485 (60.41%), Postives = 369/485 (76.08%), Query Frame = 0
Match: A0A5N6QYK1 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8021645.1}))
HSP 1 Score: 613.609 bits (1581), Expect = 0.000e+0
Identity = 293/485 (60.41%), Postives = 369/485 (76.08%), Query Frame = 0
Query: 8 TKITDMGMDSLIHCASFLNLQDISNLSLTCKYLNSLAYSDSIWRSFFRQRWPQQEPSSISERSSVREAYITRNFDVQQFKFVDPFAADILTDAKPFDNLFINKNDIVFSQGPAINIMKIDSFLKRREPLLTLRDHSARVSCMRFYSLDETSLFRSETQRNEKVLVTSSYDHSIRLWWKGNCQRCFRGHSGPVTTLSDKLLGEGSGKVFASGGDDGTVRLWSLNLNGKRGQHALRATLYGHGKPLVLMSVAGHKSSLLVSMSKDSKLRLWDTATSSSSS-SCCVGMTSIPGAPVGLKCHESLLFVAAGSSVVAIDLRTMKKVFSTPYYPPSLFSFEILPSKSLICTGGMNSAMLWDMRTFSETVKTKPLGLLDGHIGPVKFLHMDRYKVVSGSPEDPFVNVWESDTGRQTNILACNPTGGLHSTTGGSAIAVNGCEIVTGSCTEGQGIIHYRNFNYATSQVLAEENEGGS-KFWGPQHCSDSYESD 490
T + D+ +DSL HCA++L+LQD+SN+ ++CKYL +AYSDSIW +FR+ WPQQ PS+ + +REAY+ R ++Q KFVDP AD T +P++ + ++ ND+VFSQG +I I+K D L R PL +L DH+AR++CMR +SL ETSLFR+ETQ E VLVTSS DHSIRLWWKG+CQRCFRGH+GPVTTLSDKLLG+GS KV ASGG+DGTVRLWSLN +GKRGQHAL ATLYGH KP+ LMSV+GH++SLLV++S DSK+R+WDT TSS+ SCCVGMT++PGAPV +KCHES+L+VAAGSSV+AIDLRTM+KVF+ P+L+SFEI+PSKSLICTGG AMLWD+R ET K +P+ LDGH GP+ LHMD+YK+++G PED F+NVWE+D G QTN L C P +G A+AVNG IVT S E QG+I YR+F A+ V +E S KFW Q SD+ SD
Sbjct: 11 TTVMDVDVDSLAHCATYLSLQDLSNMGMSCKYLKRVAYSDSIWSHWFREHWPQQMPSTSLQTLELREAYLARRTALKQIKFVDPLVADFNTVPRPYNQILLDGNDVVFSQGSSIGILKSDGLLSGRYPLTSLSDHNARITCMRLFSLTETSLFRNETQSKENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVTTLSDKLLGDGSSKVLASGGEDGTVRLWSLNSSGKRGQHALTATLYGHVKPVKLMSVSGHRTSLLVTISSDSKVRVWDTNTSSAGHISCCVGMTAVPGAPVNIKCHESMLYVAAGSSVIAIDLRTMQKVFTAAICQPNLYSFEIMPSKSLICTGGNGRAMLWDIRRNLETTKPEPIAELDGHTGPITSLHMDQYKILTGGPEDSFINVWETDDGTQTNSLICGPP---DKASGCHALAVNGYRIVTASRGEEQGVIRYRDFTNASCPVARPADEHASNKFWDTQSYSDTDGSD 492
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5AIB8 | E-Value: 0.000e+0, PID: 64.61 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8530... [more] |
| A0A2R6PA37 | E-Value: 0.000e+0, PID: 63.02 | (F-box/WD repeat-containing protein {ECO:0000313|E... [more] |
| A0A067LL59 | E-Value: 0.000e+0, PID: 61.70 | (Uncharacterized protein {ECO:0000313|EMBL:KDP4548... [more] |
| D7SX65 | E-Value: 0.000e+0, PID: 61.22 | (Uncharacterized protein {ECO:0000313|EMBL:CBI2216... [more] |
| A0A2K1X4V3 | E-Value: 0.000e+0, PID: 61.86 | (Uncharacterized protein {ECO:0000313|EMBL:PNS9580... [more] |
| A0A3N7G4E2 | E-Value: 0.000e+0, PID: 61.60 | (Uncharacterized protein {ECO:0000313|EMBL:RQP0207... [more] |
| A0A2I4FWC0 | E-Value: 0.000e+0, PID: 60.70 | (probable E3 ubiquitin ligase complex SCF subunit ... [more] |
| A0A4V6A7H7 | E-Value: 0.000e+0, PID: 62.03 | (Vegetative incompatibility protein HET-E-1-like {... [more] |
| A5ACR8 | E-Value: 0.000e+0, PID: 60.82 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5N6QYK1 | E-Value: 0.000e+0, PID: 60.41 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8021... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |