MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSST
SVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDI
SKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQF
VEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQ
KKSRSEALNYARTYLAPFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDV
THWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVK
KQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVL
CNQSIVKMSRKGTRAFKCPYCPQEASVADCRQLYL*
| Relationships |
|---|
| The polypeptide, DCAR_021897, derives from mRNA, DCAR_021897. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5J5B299 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536336.1}))
HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0
Identity = 296/385 (76.88%), Postives = 339/385 (88.05%), Query Frame = 0
Query: 1 MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSSTSVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDISKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQFVEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQKKSRSEALNYARTYLAPFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDVTHWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVLCNQSIVKMSRKGTRAFKCPYCPQEASVADCRQLYL 385
MELNT++DAFDRVAKKQKLS+SKS+EVIDQVGHEIEQ + ++QS DS++ VDQKSIL LKTKLN + P QLEGSQKEL++NLSK KVL+K FNPDISKAYRNVDFD HI+NQIIA+HFYREGLFD ADCLI EAGEPE ISLK FVEMH+I+EA+R+RNLEPA+NWA+ NRE+L Q+G NLELKLH L FVEILQK+ R++ALNYARTYLAPFAS+HM E+QKLMGCLLWAGKLD+SPY+++ +HWEKL +EL +H C+F+GQS S L VA+AAGVEGLPTLLKLANVMA KKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQ S+ENPPMLLPCGHVLC QSI K+S+ TRAFKCPYCP +ASV+ CRQLY
Sbjct: 1 MELNTIKDAFDRVAKKQKLSTSKSQEVIDQVGHEIEQALANIQSIHDSASPVDQKSILAELKTKLNMVGPHNQLEGSQKELSINLSKFPKVLDKFFNPDISKAYRNVDFDPHIVNQIIASHFYREGLFDIADCLINEAGEPELISLKSHFVEMHRILEAMRTRNLEPALNWASTNREQLKQIGSNLELKLHRLQFVEILQKRGRADALNYARTYLAPFASLHMDEIQKLMGCLLWAGKLDRSPYTELMAPSHWEKLAEELTRHLCTFLGQSYESPLSVAVAAGVEGLPTLLKLANVMAAKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQGSEENPPMLLPCGHVLCKQSITKLSKNNTRAFKCPYCPLDASVSQCRQLYF 385
Match: A0A5B6YVA0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA35791.1}))
HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0
Identity = 288/385 (74.81%), Postives = 337/385 (87.53%), Query Frame = 0
Query: 1 MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSSTSVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDISKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQFVEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQKKSRSEALNYARTYLAPFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDVTHWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVLCNQSIVKMSRKGTRAFKCPYCPQEASVADCRQLYL 385
MELNT++DAFDRVAKKQKLS+SKS+EVIDQVG EIEQ + ++QS D ++ VD+KSIL LKTKLNT+ P QLEG QKELN+NLSK K+LEK+FNPDISKAYRNVDFD HI+NQIIA+HFYREGLF+ ADCLI EAGEPE +SLK F+EMHQI+EA+R+RNLEPA+NWA+ NRE+L Q+G NLELKLH L FV+ILQK+ R++ALNYARTYL+PFAS+H+ E+QKLMGCLLWAGKLD+SPY+++ +HWEKL +ELI+HFC F+GQS S VAIAAGVEGLPTLLKLANVMA KKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQ S+ENPPMLLPCGHVLC QSI+K+S+ TRAFKCPYCP +ASV C+ L+
Sbjct: 1 MELNTIKDAFDRVAKKQKLSTSKSQEVIDQVGREIEQALANIQSIHDPTSPVDRKSILTELKTKLNTVGPHNQLEGPQKELNINLSKYPKLLEKIFNPDISKAYRNVDFDPHIVNQIIASHFYREGLFNIADCLINEAGEPEPVSLKSHFIEMHQILEAMRARNLEPALNWASTNREQLKQIGSNLELKLHRLQFVDILQKRGRADALNYARTYLSPFASLHLDEIQKLMGCLLWAGKLDRSPYTELMAPSHWEKLAEELIRHFCHFLGQSHESPFSVAIAAGVEGLPTLLKLANVMAAKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQGSEENPPMLLPCGHVLCKQSIMKLSKSDTRAFKCPYCPLDASVKQCKLLHF 385
Match: A0A5B6YV99 ((Uncharacterized protein {ECO:0000313|EMBL:MPA35792.1}))
HSP 1 Score: 610.527 bits (1573), Expect = 0.000e+0
Identity = 288/385 (74.81%), Postives = 329/385 (85.45%), Query Frame = 0
Query: 1 MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSSTSVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDISKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQFVEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQKKSRSEALNYARTYLAPFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDVTHWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVLCNQSIVKMSRKGTRAFKCPYCPQEASVADCRQLYL 385
MELNT++DAF RVAKKQKLS+SKS+EVIDQVG EIE + ++ S D QKSIL LKTKLN I P QLEGSQKELN++LSK K+LEKVFNPDISKAYR+VDFD HI+NQIIA HFYREGLFD ADCLI EAGEPEAISLK FVEMH+I+EA+R+RNLEPA+NW +AN E+L Q+G NL+LKLH L FVEILQK+ R++ALNYARTYLAPFAS+HM E+QKLMGCLLWAGKLD+SPY+++ +HWEKL +ELI+HFC F+GQS S VAIAAGVEGLPTLLKLANVMA KKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQ S+ENPPMLLPCGHVLC QSI+K+S+ TRAFKCPYCP +ASV C+ L+
Sbjct: 1 MELNTIKDAFYRVAKKQKLSTSKSQEVIDQVGCEIEHALANIHSVHDPPV---QKSILTELKTKLNVIGPHNQLEGSQKELNISLSKYPKLLEKVFNPDISKAYRSVDFDHHIVNQIIALHFYREGLFDIADCLINEAGEPEAISLKSHFVEMHRILEAMRARNLEPALNWVSANHEQLKQIGSNLKLKLHRLQFVEILQKRGRADALNYARTYLAPFASLHMDEIQKLMGCLLWAGKLDRSPYTELMAPSHWEKLAEELIRHFCHFLGQSHESPFSVAIAAGVEGLPTLLKLANVMAAKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQGSEENPPMLLPCGHVLCKQSIMKLSKSDTRAFKCPYCPLDASVKQCKLLHF 382
Match: A0A7J0EUD7 ((Uncharacterized protein {ECO:0000313|EMBL:GFY90115.1}))
HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0
Identity = 281/385 (72.99%), Postives = 324/385 (84.16%), Query Frame = 0
Query: 1 MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSSTSVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDISKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQFVEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQKKSRSEALNYARTYLAPFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDVTHWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVLCNQSIVKMSRKGTRAFKCPYCPQEASVADCRQLYL 385
MEL+T++DAFDRV+KKQKLS+SKS EVIDQ GHEIEQ + ++QS Q + D++SILV LKTKL++I+P QLEGSQKE+N+NLSK K LEKVFNPDISKAYRNVDFD HI+N IIA HFYR GLFD ADCL+ EAGEPEAISLK +F+E+HQ++EA+R RNL+PA++W + NRE L Q+G NLELKL L FVEILQ ++R++ALNYARTYL+P ASVHM E+QKLMGCLLW GKLDK PYSD+ THWE L DEL Q FCSF+GQS S L V +AAGVEGLPTLLKLANVMA KKQEW AMKQLPVPVDLGKEFQFHSIFVCPVSRDQ+S+ENPPMLL CGHVLC QSI K+S+ TR FKCPYCP EAS A CRQ+Y
Sbjct: 1 MELSTIKDAFDRVSKKQKLSTSKSVEVIDQFGHEIEQALANIQSLQVPISPADKRSILVELKTKLSSITPHNQLEGSQKEVNINLSKYQKTLEKVFNPDISKAYRNVDFDPHIVNHIIAIHFYRVGLFDVADCLVNEAGEPEAISLKTRFLELHQMLEAMRGRNLKPALDWVSTNRENLKQIGSNLELKLLRLQFVEILQNRTRADALNYARTYLSPLASVHMDEIQKLMGCLLWVGKLDKCPYSDLFSPTHWEILADELTQQFCSFLGQSYGSPLNVVVAAGVEGLPTLLKLANVMAAKKQEWLAMKQLPVPVDLGKEFQFHSIFVCPVSRDQASEENPPMLLLCGHVLCKQSISKLSKNSTRTFKCPYCPLEASAAQCRQIYF 385
Match: A0A834GXL0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7143743.1}))
HSP 1 Score: 600.512 bits (1547), Expect = 0.000e+0
Identity = 279/385 (72.47%), Postives = 325/385 (84.42%), Query Frame = 0
Query: 1 MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSSTSVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDISKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQFVEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQKKSRSEALNYARTYLAPFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDVTHWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVLCNQSIVKMSRKGTRAFKCPYCPQEASVADCRQLYL 385
MELNT+RDAFDRVAKKQKLS+SKS EVIDQ+GHEIEQ + ++ S Q S++ DQKSIL+ LKTKLN I P QLEGSQKELN NLSK K L+K FNPDISKAYRNVD+D HILN II +HFYR G FD ADCLI EA EPEA+S+K QF+E+H+I++A+R+R+LEPA+ WA+ NRE L ++G NLELKLH L +VEILQ ++++ALNYAR +L+PFAS HM E+QKLMGCLLW GKLDK PYS++ HWEKL +EL + FCSF+GQS S L VA+AAGVEGLPTLLKLANVMAVKKQEW AMKQLPVPVDLGKEFQFHSIFVCPVSR+Q S+ENPPMLLPCGHVLC QSI+K+S+ TR FKCPYCP EASVA CRQLY+
Sbjct: 1 MELNTIRDAFDRVAKKQKLSTSKSLEVIDQIGHEIEQALANIHSIQGSTSPADQKSILMELKTKLNAIGPHNQLEGSQKELNTNLSKYQKTLDKYFNPDISKAYRNVDYDPHILNHIIVSHFYRVGSFDVADCLITEAAEPEAVSIKSQFLELHKILKAMRARDLEPALYWASTNRECLNRIGSNLELKLHRLQYVEILQSGTQADALNYARNHLSPFASRHMDEIQKLMGCLLWVGKLDKCPYSELFSENHWEKLAEELTRQFCSFLGQSYESPLSVAVAAGVEGLPTLLKLANVMAVKKQEWLAMKQLPVPVDLGKEFQFHSIFVCPVSREQGSEENPPMLLPCGHVLCKQSIMKLSKSSTRIFKCPYCPHEASVAQCRQLYV 385
Match: A0A4S4DX89 ((Uncharacterized protein {ECO:0000313|EMBL:THG08001.1}))
HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 279/386 (72.28%), Postives = 323/386 (83.68%), Query Frame = 0
Query: 1 MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSSTSVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDISKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQFVEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQKKSRSEALNYARTYLA-PFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDVTHWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVLCNQSIVKMSRKGTRAFKCPYCPQEASVADCRQLYL 385
MELNT++DAFDRVAKKQKLS+SKS+EVIDQVGHE++Q + ++QS QD ++ DQKSIL+ LK KLN I P QLEGSQKELN+NLSK K+LEK FNPDISKAYRNVDFD HI+N IIA+HFYR GLFD AD LI EAGEPE ISLK F+E+HQI+EAV RNLEPA+ W + NRE L +G NLELKL L FVEILQ ++++ALNYARTYLA + +HM E+QKLMGCLLWAGKLD+SPYS++ THWE L +EL + FCSF+GQS S L VA++AGVEGLPTLLKLANVM+ KKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSR+Q S+ENPPMLLPCGHVLC QSI+K+S+ TR FKCPYCP EASVA C+QLY
Sbjct: 1 MELNTIKDAFDRVAKKQKLSTSKSQEVIDQVGHELDQALTNIQSIQDPTSPADQKSILMELKAKLNAIGPHNQLEGSQKELNINLSKYPKILEKTFNPDISKAYRNVDFDPHIVNHIIASHFYRVGLFDVADTLINEAGEPEVISLKSHFMELHQILEAVSVRNLEPALYWVSTNRESLKHIGSNLELKLRRLQFVEILQNSTQADALNYARTYLAVAWHGLHMDEIQKLMGCLLWAGKLDRSPYSELLSPTHWETLAEELARQFCSFLGQSYESPLSVAVSAGVEGLPTLLKLANVMSAKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSREQGSEENPPMLLPCGHVLCKQSIMKLSKSSTRTFKCPYCPLEASVAQCKQLYF 386
Match: A0A7J7GC69 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5937004.1}))
HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0
Identity = 281/383 (73.37%), Postives = 324/383 (84.60%), Query Frame = 0
Query: 1 MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSSTSVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDISKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQFVEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQKKSRSEALNYARTYLAPFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDVTHWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVLCNQSIVKMSRKGTRAFKCPYCPQEASVADCRQL 383
M+L+T+RDAFDRVAKKQKLS+SKS+EVIDQVG EIEQ + ++QS QD ++ ILV LKTKLN I P QLEGSQKELN+NL+K K LE+ FNPDISKAYRNVDFD HI+N IIA+HFYR GLFD ADCLI EAGEPEAI LK +F+E+HQI++A+R+RNL+PA+ W + NRE L Q G NLELKLH L FVEIL+ KS+++ALNYART+LAPFA++HM E+QKLMGCLLW GKLD+ PYS+ THWEKL +EL+ FCSF+GQSS SAL VA+AAGVEGLPTLLKL NVMA KKQEWQAMKQLPVPVDL KEFQFHSIFVCPVSR+Q S+ENPPMLLPCGHVLC QSI+K+SR TR FKCPYCP EASVA CRQL
Sbjct: 1 MDLSTIRDAFDRVAKKQKLSTSKSQEVIDQVGREIEQALANIQSIQDLTSPA---PILVELKTKLNAIGPHNQLEGSQKELNINLNKYPKTLERFFNPDISKAYRNVDFDSHIVNHIIASHFYRVGLFDIADCLINEAGEPEAIFLKSRFLELHQILDAMRARNLKPALYWVSTNRENLVQNGSNLELKLHRLQFVEILRNKSQADALNYARTFLAPFATLHMDEIQKLMGCLLWVGKLDRCPYSEFLSPTHWEKLAEELMWQFCSFLGQSSESALSVAVAAGVEGLPTLLKLVNVMAAKKQEWQAMKQLPVPVDLRKEFQFHSIFVCPVSREQGSEENPPMLLPCGHVLCKQSIMKLSRSSTRTFKCPYCPLEASVAQCRQL 380
Match: A0A6A4KT20 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9448392.1}) (Fragment))
HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 274/385 (71.17%), Postives = 324/385 (84.16%), Query Frame = 0
Query: 1 MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSSTSVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDISKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQFVEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQKKSRSEALNYARTYLAPFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDVTHWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVLCNQSIVKMSRKGTRAFKCPYCPQEASVADCRQLYL 385
MELNT+RDAFDRVAKKQKLS+SKS EVIDQ+GHEIEQ + ++ S Q S++ DQK IL+ LKTKLN I+P QLEGSQKELN NLSK K+L+K FNPDISKAYRNVD+D HILN II +HFYR GLFD ADCLI EA EPEA+S+K +F+E+H+I++A+R+R+LEPA+ WA+ N E L ++G NLELKLH L +VEILQ ++++ALNYAR +L+PFA +HM E+QKL+GCLLW GKLDK PYS++ HWEKL +EL FCSF+GQS S L VA+AAGVEGLPTLLKLANVMAVKKQEW AMKQLPVPVDLGKEFQFHSIFVCPVSR+Q S+ENPPMLLPCGHVLC QSI+K+S+ TR FKCPYCP E SVA CRQLY+
Sbjct: 1 MELNTIRDAFDRVAKKQKLSTSKSLEVIDQIGHEIEQALANIHSIQGSTSPADQKFILMELKTKLNAIAPHNQLEGSQKELNTNLSKYQKILDKYFNPDISKAYRNVDYDPHILNHIIVSHFYRVGLFDVADCLITEAAEPEAVSIKSRFLELHKILKAMRARDLEPALYWASTNSECLNEIGSNLELKLHRLQYVEILQSGTQADALNYARNHLSPFAFLHMDEIQKLVGCLLWVGKLDKCPYSELFSENHWEKLAEELTXQFCSFLGQSYESPLSVAVAAGVEGLPTLLKLANVMAVKKQEWLAMKQLPVPVDLGKEFQFHSIFVCPVSREQGSEENPPMLLPCGHVLCKQSIMKLSKSSTRTFKCPYCPHEVSVAQCRQLYV 385
Match: A0A2R6RC66 ((Protein RMD5 A like {ECO:0000313|EMBL:PSS26167.1}))
HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0
Identity = 278/385 (72.21%), Postives = 324/385 (84.16%), Query Frame = 0
Query: 1 MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSSTSVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDISKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQFVEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQKKSRSEALNYARTYLAPFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDVTHWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVLCNQSIVKMSRKGTRAFKCPYCPQEASVADCRQLYL 385
MEL+T++DAFDRV+KKQKLS+SKS EVIDQ GHEIEQ ++++QS Q + D++SILV LKTKL++I+ QLEGSQKE+N+NLSK K LEKVFNPDISKAYRNVDFD HI+N IIA HFYR GLFD ADCL+ +AGEPEAISLK +F+E+HQI+EA+R+RNL+PA++W + N E L Q+G NLELKL L FVEILQ ++R++ALNYARTYL+P ASVHM E+QKLMGCLLW GKLDK PYS++ THWE L DEL Q FCSF+GQS S L V +AAGVEGLPTLLKLANVMA KKQEW AMKQLPVPVDLGKEFQFHSIFVCPVSRDQ+S+ENPPMLL CGHVLC QSI K+S+ TR FKCPYCP EAS A CRQ+Y
Sbjct: 1 MELSTIKDAFDRVSKKQKLSTSKSVEVIDQFGHEIEQALVNIQSLQVPISPADKRSILVELKTKLSSITTHNQLEGSQKEVNINLSKYQKTLEKVFNPDISKAYRNVDFDPHIVNHIIAIHFYRVGLFDVADCLVNDAGEPEAISLKTRFLELHQILEAMRARNLKPALDWVSTNCENLKQIGSNLELKLLRLQFVEILQNRTRADALNYARTYLSPLASVHMDEIQKLMGCLLWVGKLDKCPYSELFSPTHWEILADELTQQFCSFLGQSYESPLNVVVAAGVEGLPTLLKLANVMAAKKQEWLAMKQLPVPVDLGKEFQFHSIFVCPVSRDQASEENPPMLLLCGHVLCKQSISKLSKNSTRTFKCPYCPLEASAAQCRQIYF 385
Match: A0A1U8A510 ((protein RMD5 homolog A {ECO:0000313|RefSeq:XP_010259940.1, ECO:0000313|RefSeq:XP_010259941.1}))
HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0
Identity = 279/385 (72.47%), Postives = 317/385 (82.34%), Query Frame = 0
Query: 1 MELNTVRDAFDRVAKKQKLSSSKSREVIDQVGHEIEQTVMSMQSTQDSSTSVDQKSILVALKTKLNTISPQTQLEGSQKELNVNLSKCSKVLEKVFNPDISKAYRNVDFDLHILNQIIANHFYREGLFDTADCLIKEAGEPEAISLKCQFVEMHQIIEAVRSRNLEPAINWATANREKLTQVGCNLELKLHTLCFVEILQKKSRSEALNYARTYLAPFASVHMYEVQKLMGCLLWAGKLDKSPYSDITDVTHWEKLVDELIQHFCSFMGQSSSSALRVAIAAGVEGLPTLLKLANVMAVKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQSSDENPPMLLPCGHVLCNQSIVKMSRKGTRAFKCPYCPQEASVADCRQLYL 385
MEL+T++DAFDRVAKKQ+LSSSK++EVIDQVG EIEQ + M S DS++S DQKSIL+ L +KLN + P QLEGSQKELNV LSK +K+LEK FNPDISKAYRNVDFD H +NQIIA HFYR GLFD DC I E+GE EA LK F+EM+QI+EA++ RNLEPA+NWAT N EKL Q +LELKLH L FVEILQK +R++AL YARTYLAPFAS HM E+QKLMGCLLWAG+LD SPY++ THWEKL +EL Q FC +GQS S L V IAAGV+GLPTLLKLANVMA KKQEWQAMKQLPVPVDLG EFQFHSIFVCPVSRDQ S+ENPPML+PCGHVLC QSIVK+S+ TR FKCPYCP EA+VA CRQLY
Sbjct: 1 MELSTIKDAFDRVAKKQRLSSSKAQEVIDQVGREIEQALTKMHSVHDSTSSSDQKSILMELNSKLNEMGPLKQLEGSQKELNVALSKYAKLLEKSFNPDISKAYRNVDFDTHTVNQIIAGHFYRRGLFDLGDCFINESGESEATYLKSPFLEMYQILEAMKCRNLEPALNWATTNCEKLMQNRSSLELKLHRLQFVEILQKGTRADALTYARTYLAPFASRHMAEIQKLMGCLLWAGRLDCSPYAEFLSPTHWEKLAEELTQQFCCLLGQSFESPLSVVIAAGVQGLPTLLKLANVMASKKQEWQAMKQLPVPVDLGSEFQFHSIFVCPVSRDQGSEENPPMLMPCGHVLCKQSIVKLSKSSTRTFKCPYCPLEATVAVCRQLYF 385
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5B299 | E-Value: 0.000e+0, PID: 76.88 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more] |
| A0A5B6YVA0 | E-Value: 0.000e+0, PID: 74.81 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3579... [more] |
| A0A5B6YV99 | E-Value: 0.000e+0, PID: 74.81 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3579... [more] |
| A0A7J0EUD7 | E-Value: 0.000e+0, PID: 72.99 | (Uncharacterized protein {ECO:0000313|EMBL:GFY9011... [more] |
| A0A834GXL0 | E-Value: 0.000e+0, PID: 72.47 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7143... [more] |
| A0A4S4DX89 | E-Value: 0.000e+0, PID: 72.28 | (Uncharacterized protein {ECO:0000313|EMBL:THG0800... [more] |
| A0A7J7GC69 | E-Value: 0.000e+0, PID: 73.37 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5937... [more] |
| A0A6A4KT20 | E-Value: 0.000e+0, PID: 71.17 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9448... [more] |
| A0A2R6RC66 | E-Value: 0.000e+0, PID: 72.21 | (Protein RMD5 A like {ECO:0000313|EMBL:PSS26167.1}... [more] |
| A0A1U8A510 | E-Value: 0.000e+0, PID: 72.47 | (protein RMD5 homolog A {ECO:0000313|RefSeq:XP_010... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |