MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTD
IHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCC
KNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIP
DGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKL
AKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYII
DTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSF
IGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVD
VSGSKLDQEE*
| Relationships |
|---|
| The polypeptide, DCAR_021986, derives from mRNA, DCAR_021986. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7BLS4 (PKS_ER domain-containing protein {ECO:0000259|SMART:SM00829})
HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0
Identity = 311/358 (86.87%), Postives = 339/358 (94.69%), Query Frame = 0
Query: 1 MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCCKNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVDVSGSKLDQ 358
MGSLEVER T GWAARDPSGVLSPYTYTLRDT PED+FIK+ CCGICHTD+HQ+KNDLG SNYPMVPGHEV+GEVVE+G+DV++FKVGDCVGVGTIVGCC+NCRPC +D+EQYCNKKIWSYNDVYTDGKPTQGGF+ +MVVD+KF VK+PDGMAPEQAAPLLCAGVTVYSPLTHFGL K +GL+GGILGLGGVGHMGVK+AKAMGHHVTVISSSD+K+EEAM+HLGAD YLVSSD T+MQEAADSLDYIIDTVP HPLEPYLSLLKLDGKLILMGVINTPLQF+SPMVMLGRKAITGSFIGS+KETEEML FC EK +TS IEVVKMDYIN AFERLEKNDVRYRFVVDV+GSKLD+
Sbjct: 1 MGSLEVERTTTGWAARDPSGVLSPYTYTLRDTGPEDVFIKVICCGICHTDVHQVKNDLGMSNYPMVPGHEVIGEVVEVGSDVSKFKVGDCVGVGTIVGCCRNCRPCKSDIEQYCNKKIWSYNDVYTDGKPTQGGFAGAMVVDEKFVVKLPDGMAPEQAAPLLCAGVTVYSPLTHFGL-KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDRKREEAMEHLGADEYLVSSDATRMQEAADSLDYIIDTVPAVHPLEPYLSLLKLDGKLILMGVINTPLQFVSPMVMLGRKAITGSFIGSMKETEEMLEFCKEKGLTSMIEVVKMDYINTAFERLEKNDVRYRFVVDVAGSKLDE 357
Match: A0A5J5B0V3 (PKS_ER domain-containing protein {ECO:0000259|SMART:SM00829})
HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0
Identity = 310/358 (86.59%), Postives = 336/358 (93.85%), Query Frame = 0
Query: 1 MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCCKNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVDVSGSKLDQ 358
MGSLEVER T GWAARDPSGVLSPYTYTLR+T PED+F+K+ CCGICHTD+HQ+KNDLG SNYPMVPGHEV+GEVVE+G+DVT+FK GDCVGVGTIVGCC++CRPC AD+EQYCNKKIWSYND+YTDGKPTQGGF+ +MVVD KF VKIP+GMAPEQAAPLLCAGVTVYSPLTHFGL K +GL+GGILGLGGVGHMGVKLAKAMGHHVTVISSSD+K+EEAMDHLGAD YLVSSD T+MQEAADSLDYIIDTVP HPLEPYLSLLKLDGKLILMGVINTPLQF+SPMVMLGRK ITGSFIGS+KETEEML FC EK +TS IEVVKMDYIN AFERLEKNDVRYRFVVDV+GSKLDQ
Sbjct: 1 MGSLEVERTTTGWAARDPSGVLSPYTYTLRNTGPEDVFVKVICCGICHTDVHQVKNDLGMSNYPMVPGHEVIGEVVEVGSDVTKFKAGDCVGVGTIVGCCRSCRPCQADIEQYCNKKIWSYNDIYTDGKPTQGGFAGAMVVDHKFVVKIPEGMAPEQAAPLLCAGVTVYSPLTHFGL-KQSGLRGGILGLGGVGHMGVKLAKAMGHHVTVISSSDRKREEAMDHLGADDYLVSSDATRMQEAADSLDYIIDTVPAFHPLEPYLSLLKLDGKLILMGVINTPLQFVSPMVMLGRKTITGSFIGSMKETEEMLEFCREKGLTSMIEVVKMDYINTAFERLEKNDVRYRFVVDVAGSKLDQ 357
Match: P42495 (Probable cinnamyl alcohol dehydrogenase 1 (CAD 1) (1.1.1.195))
HSP 1 Score: 630.558 bits (1625), Expect = 0.000e+0
Identity = 330/359 (91.92%), Postives = 342/359 (95.26%), Query Frame = 0
Query: 1 MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCCKNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVDVSGSKLDQE 359
MGSLE ERKT GWAARDPSGVLSPYTYTLR+T PED+FIKI CGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVE+G+DVT+FKVGDCVG GTIVGCCK CRPC ADVEQYCNKKIWSYNDVYTDGKPTQGGFS MVVDQKF VKIPDGMAPEQAAPLLCAGVTVYSPLTHFGL +I+GL+GGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEA+DHLGADAYLVSSD TQMQEAADSLDYIIDTVPV HPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGS+KETEEML FCNEK ITS+IEVVKMDYIN AFERLEKNDVRYRFVVDV+GSKLDQE
Sbjct: 1 MGSLEAERKTTGWAARDPSGVLSPYTYTLRETGPEDVFIKIIYCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEVGSDVTKFKVGDCVGDGTIVGCCKTCRPCKADVEQYCNKKIWSYNDVYTDGKPTQGGFSGHMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLKEISGLRGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAIDHLGADAYLVSSDATQMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSMKETEEMLDFCNEKGITSTIEVVKMDYINTAFERLEKNDVRYRFVVDVAGSKLDQE 359
Match: A0A455ZBV3 ((Cinnamyl-alcohol dehydrogenase {ECO:0000313|EMBL:DAC74029.1}) (1.1.1.195 {ECO:0000313|EMBL:DAC74029.1}))
HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 286/359 (79.67%), Postives = 325/359 (90.53%), Query Frame = 0
Query: 1 MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCCKNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVDVSGSKLDQE 359
MGS+E R +GWAA DPSGVL+P T+TLR+T PED+FIK+ CCGICHTDIHQIKN LG S YPMVPGHE+VGEV+E+G++VT+FK GD VGVG +VGCC++CR C+AD+EQYCNKKIWSYNDVYTDG PTQGGF+ SM+VDQKF VKIP+GM+PEQAAPLLCAGVTVYSPL HFGL K +GLKG ILGLGGVGHMGVK++KAMGHHVTVISSSDKKK EA+DHLGAD YLVSSD++ M++AADS DYIIDTVPVNHPLEPYLSLLK+DGKLILMGVINTPLQFISPMVMLGRK ITGSFIGS+KETEEML FC ++ ++S IEVVKMDY+N AFERLEKNDVRYRFVVDV+GS L Q+
Sbjct: 1 MGSMEKGRTIVGWAATDPSGVLAPQTFTLRNTGPEDVFIKVMCCGICHTDIHQIKNHLGMSRYPMVPGHEMVGEVLEVGSEVTKFKTGDIVGVGLLVGCCRSCRACDADIEQYCNKKIWSYNDVYTDGNPTQGGFAESMIVDQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLNHFGLKK-SGLKGAILGLGGVGHMGVKISKAMGHHVTVISSSDKKKVEALDHLGADEYLVSSDSSTMEQAADSFDYIIDTVPVNHPLEPYLSLLKVDGKLILMGVINTPLQFISPMVMLGRKVITGSFIGSMKETEEMLEFCKDEGLSSMIEVVKMDYVNTAFERLEKNDVRYRFVVDVAGSDLQQQ 358
Match: Q1HGA8 ((Putative cinnamyl alcohol dehydrogenase {ECO:0000313|EMBL:ABF48495.1}))
HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0
Identity = 286/358 (79.89%), Postives = 323/358 (90.22%), Query Frame = 0
Query: 1 MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCCKNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVDVSGSKLDQ 358
MGS+E R +GWAA DPSGVL+P T+TLR+T PED+FIK+ CCGICHTDIHQ+KN LG S YPMVPGHE+VGEV+E+G++VT+FK GD VGVG +VGCC++CR C+AD+EQYCNKKIWSYNDVYTDG PTQGGF+ SMVVDQKF VKIP+GM+PEQAAPLLCAGVTVYSPL HFGL K +G+KG ILGLGGVGHMGVK+AKAMGHHVTVISSSDKKK EA+DHLGAD YLVSSD+ M++AADS DYIIDTVPVNHPLEPYLSLLK+DGKLILMGVINTPLQFISPMVMLGRK ITGSFIGS+KETEEML FC ++ ++S IEVVKMDY+N AFERLEKNDVRYRFVVDV+GS L Q
Sbjct: 1 MGSMEKGRTIVGWAATDPSGVLAPQTFTLRNTGPEDVFIKVMCCGICHTDIHQVKNHLGMSRYPMVPGHEMVGEVLEVGSEVTKFKTGDIVGVGLLVGCCRSCRACDADIEQYCNKKIWSYNDVYTDGNPTQGGFAESMVVDQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLNHFGLKK-SGMKGAILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKIEAVDHLGADEYLVSSDSATMEQAADSFDYIIDTVPVNHPLEPYLSLLKVDGKLILMGVINTPLQFISPMVMLGRKVITGSFIGSMKETEEMLEFCKDEGLSSMIEVVKMDYVNTAFERLEKNDVRYRFVVDVAGSDLQQ 357
Match: A0A6P6WC14 ((cinnamyl alcohol dehydrogenase 1 {ECO:0000313|RefSeq:XP_027112565.1}))
HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0
Identity = 293/358 (81.84%), Postives = 334/358 (93.30%), Query Frame = 0
Query: 1 MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCCKNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVDVSGSKLDQ 358
MGSLEVE++T GWAARDPSG+LSPYTYTLR+T PED+++++ CCGICHTDIHQIKNDLG SNYPMVPGHEVVGEVVE+G++VT+F+VGDCVGVG IVGCCK CRPC AD+EQYCNKKIWSYNDVYTDG+PTQGGF+ +MVV Q+F VKIPDGM+ EQAAPLLCAGVTVYSPL HFGL K +GL+G ILGLGGVGHMGVK+AKAMGHHVTVISSS+KK+EEA++HLGAD Y+VSSD+ +MQE ADS+DYIIDT+PV HPLEPYLSLLK+DGKLILMGVINTPLQF+SPMVMLGRK ITGSF+GSIKETEEML FC E+E+TS+IEVVKMDY+N A ERLEKNDVRYRFVVDV+GSKL+Q
Sbjct: 4 MGSLEVEKETTGWAARDPSGILSPYTYTLRNTGPEDVYVRVICCGICHTDIHQIKNDLGMSNYPMVPGHEVVGEVVEVGSEVTKFRVGDCVGVGVIVGCCKTCRPCKADIEQYCNKKIWSYNDVYTDGRPTQGGFAGAMVVHQQFVVKIPDGMSAEQAAPLLCAGVTVYSPLNHFGL-KESGLRGAILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEAIEHLGADEYVVSSDSARMQEFADSIDYIIDTIPVFHPLEPYLSLLKVDGKLILMGVINTPLQFVSPMVMLGRKTITGSFVGSIKETEEMLEFCKERELTSTIEVVKMDYVNAALERLEKNDVRYRFVVDVAGSKLEQ 360
Match: A0A7J7N4J4 (PKS_ER domain-containing protein {ECO:0000259|SMART:SM00829})
HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 281/356 (78.93%), Postives = 327/356 (91.85%), Query Frame = 0
Query: 1 MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCCKNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVDVSGSKL 356
MGSL++ER T GWAARD +G+LSPYTYTLR+T PED+++K+ CGICHTDIHQIKNDLG SNYPMVPGHEVVGEV+E+G+ VT+FKVGDCVGVG +VGCC+NC PCNA++EQYCNKKIWSYNDVY+DGKPTQGGFS ++VVDQKFAVKIP+GMAPEQAAPLLCAG+TVYSPL+HFGL K +GLKG I+GLGGVGHMGVK+AKAMGHH+TVISSSDKK+ EAM+HLGADAYL+SSD QM+EA DSLDYI+DTVPV HPLEPYLSLLK+DG+LILMGVI TPLQF++PMVMLGRK+ITG+F+GS+ E EML FC EK ITS IE+V MDY+NKA ERLEKNDVRY+FV++V+GSKL
Sbjct: 1 MGSLKMERTTTGWAARDSTGILSPYTYTLRNTGPEDVYLKVAYCGICHTDIHQIKNDLGMSNYPMVPGHEVVGEVLEVGSSVTKFKVGDCVGVGLLVGCCRNCSPCNANIEQYCNKKIWSYNDVYSDGKPTQGGFSDALVVDQKFAVKIPEGMAPEQAAPLLCAGLTVYSPLSHFGLRK-SGLKGAIVGLGGVGHMGVKIAKAMGHHMTVISSSDKKRVEAMEHLGADAYLMSSDEAQMKEAIDSLDYILDTVPVVHPLEPYLSLLKVDGRLILMGVIATPLQFVTPMVMLGRKSITGTFVGSMDEIGEMLDFCKEKGITSMIEMVHMDYVNKAIERLEKNDVRYKFVINVAGSKL 355
Match: A0A6P6VU38 ((cinnamyl alcohol dehydrogenase 1-like {ECO:0000313|RefSeq:XP_027106020.1}))
HSP 1 Score: 612.068 bits (1577), Expect = 0.000e+0
Identity = 294/358 (82.12%), Postives = 332/358 (92.74%), Query Frame = 0
Query: 1 MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCCKNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVDVSGSKLDQ 358
MGSLEVE++T GWAARDPSG+LSPYTYTLR+T PED+++++ CCGICHTDIHQIKNDLG SNYPMVPGHEVVGEVVE+G++VT+F+VGDCVGVG +VGCCK CRPC AD+EQYCNKKIWSYNDVYTDG+PTQGGF+ +MVV QKF VKIPDGM+ EQAAPLLCAGVTVYSPL HFGL K +GL+G ILGLGGVGHMGVK+AKAMGHHVTVISSS+KK+EEA++HLGAD YLVSSDT +MQ ADSLDYIIDTVPV HPLEPYLSLLK+DGKLILMGVINTPLQF+SPMVMLGRK ITGSF+GS+KETEEML FC E+ +TS+IEVVKMDY+N A ERLEKNDVRYRFVVDV+GSKL+Q
Sbjct: 4 MGSLEVEKETTGWAARDPSGILSPYTYTLRNTGPEDVYVRVICCGICHTDIHQIKNDLGMSNYPMVPGHEVVGEVVEVGSEVTKFRVGDCVGVGVLVGCCKTCRPCKADIEQYCNKKIWSYNDVYTDGRPTQGGFAGAMVVHQKFVVKIPDGMSAEQAAPLLCAGVTVYSPLNHFGL-KESGLRGAILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEAIEHLGADEYLVSSDTARMQGFADSLDYIIDTVPVCHPLEPYLSLLKVDGKLILMGVINTPLQFVSPMVMLGRKTITGSFVGSMKETEEMLEFCKERNLTSTIEVVKMDYVNTALERLEKNDVRYRFVVDVAGSKLEQ 360
Match: A0A3S3N8Z9 ((Putative cinnamyl alcohol dehydrogenase 1 {ECO:0000313|EMBL:RWR82978.1}))
HSP 1 Score: 611.683 bits (1576), Expect = 0.000e+0
Identity = 281/359 (78.27%), Postives = 322/359 (89.69%), Query Frame = 0
Query: 1 MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCCKNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVDVSGSKLDQE 359
MGSLE E IGWAARDP GVLSPY+YTLR T PED+ IK+ CGICHTDIHQ+KN LG SNYPMVPGHEVVGEV E+G+DV +FKVG+ VGVG IVGCC+ C PC ++VEQYCNK+IWSYNDVY DGKPTQGGF+SSM+ DQKF VK+P+ MAPEQAAPLLCAGVTVYSPL HFGL+K +GL+G I+GLGGVGHMGVK+AKAMGHHVTV+SSSDKK+EEAMDHLGADAYL+SSD +MQEAADSLDYI+DTVPV+HPLEPY+SLLK+DGKL+LMGVI+ PLQF+SPM+MLGRK ITG+FIGSI ET+EML FC EK +TS IE+VKMDY+NKA ERLEKNDVRYRFVVD++GS LDQ+
Sbjct: 1 MGSLESETSVIGWAARDPKGVLSPYSYTLRRTGPEDVVIKVLYCGICHTDIHQVKNHLGMSNYPMVPGHEVVGEVTEVGSDVKKFKVGETVGVGVIVGCCRTCGPCKSNVEQYCNKRIWSYNDVYVDGKPTQGGFASSMIADQKFVVKVPEKMAPEQAAPLLCAGVTVYSPLRHFGLNK-SGLRGAIVGLGGVGHMGVKIAKAMGHHVTVVSSSDKKREEAMDHLGADAYLISSDVVKMQEAADSLDYILDTVPVHHPLEPYISLLKVDGKLVLMGVISEPLQFVSPMIMLGRKTITGTFIGSIDETQEMLEFCEEKGLTSMIEIVKMDYVNKAMERLEKNDVRYRFVVDIAGSDLDQK 358
Match: A0A068TPF4 (PKS_ER domain-containing protein {ECO:0000259|SMART:SM00829})
HSP 1 Score: 611.298 bits (1575), Expect = 0.000e+0
Identity = 294/358 (82.12%), Postives = 332/358 (92.74%), Query Frame = 0
Query: 1 MGSLEVERKTIGWAARDPSGVLSPYTYTLRDTAPEDIFIKITCCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEIGTDVTRFKVGDCVGVGTIVGCCKNCRPCNADVEQYCNKKIWSYNDVYTDGKPTQGGFSSSMVVDQKFAVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLSKIAGLKGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAMDHLGADAYLVSSDTTQMQEAADSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSIKETEEMLAFCNEKEITSSIEVVKMDYINKAFERLEKNDVRYRFVVDVSGSKLDQ 358
MGSLEVE++T GWAARDPSG+LSPYTYTLR+T PED+++++ CCGICHTDIHQIKNDLG SNYPMVPGHEVVGEVVE+G++VT+F+VGDCVGVG +VGCCK CRPC AD+EQYCNKKIWSYNDVYTDG+PTQGGF+ +MVV QKF VKIPDGM+ EQAAPLLCAGVTVYSPL HFGL K +GL+G ILGLGGVGHMGVK+AKAMGHHVTVISSS+KK+EEA++HLGAD YLVSSDT +MQ ADSLDYIIDTVPV HPLEPYLSLLK+DGKLILMGVINTPLQF+SPMVMLGRK ITGSF+GS+KETEEML FC E+ +TS+IEVVKMDY+N A ERLEKNDVRYRFVVDV+GSKL+Q
Sbjct: 1 MGSLEVEKETTGWAARDPSGILSPYTYTLRNTGPEDVYVRVICCGICHTDIHQIKNDLGMSNYPMVPGHEVVGEVVEVGSEVTKFRVGDCVGVGVLVGCCKTCRPCKADIEQYCNKKIWSYNDVYTDGRPTQGGFAGAMVVHQKFVVKIPDGMSAEQAAPLLCAGVTVYSPLNHFGL-KESGLRGAILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEAIEHLGADEYLVSSDTARMQGFADSLDYIIDTVPVCHPLEPYLSLLKVDGKLILMGVINTPLQFVSPMVMLGRKTITGSFVGSMKETEEMLEFCKERNLTSTIEVVKMDYVNTALERLEKNDVRYRFVVDVAGSKLEQ 357
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BLS4 | E-Value: 0.000e+0, PID: 86.87 | PKS_ER domain-containing protein {ECO:0000259|SMAR... [more] |
| A0A5J5B0V3 | E-Value: 0.000e+0, PID: 86.59 | PKS_ER domain-containing protein {ECO:0000259|SMAR... [more] |
| P42495 | E-Value: 0.000e+0, PID: 91.92 | Probable cinnamyl alcohol dehydrogenase 1 (CAD 1) ... [more] |
| A0A455ZBV3 | E-Value: 0.000e+0, PID: 79.67 | (Cinnamyl-alcohol dehydrogenase {ECO:0000313|EMBL:... [more] |
| Q1HGA8 | E-Value: 0.000e+0, PID: 79.89 | (Putative cinnamyl alcohol dehydrogenase {ECO:0000... [more] |
| A0A6P6WC14 | E-Value: 0.000e+0, PID: 81.84 | (cinnamyl alcohol dehydrogenase 1 {ECO:0000313|Ref... [more] |
| A0A7J7N4J4 | E-Value: 0.000e+0, PID: 78.93 | PKS_ER domain-containing protein {ECO:0000259|SMAR... [more] |
| A0A6P6VU38 | E-Value: 0.000e+0, PID: 82.12 | (cinnamyl alcohol dehydrogenase 1-like {ECO:000031... [more] |
| A0A3S3N8Z9 | E-Value: 0.000e+0, PID: 78.27 | (Putative cinnamyl alcohol dehydrogenase 1 {ECO:00... [more] |
| A0A068TPF4 | E-Value: 0.000e+0, PID: 82.12 | PKS_ER domain-containing protein {ECO:0000259|SMAR... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |