Resource Type:
Polypeptide
Name:
DCAR_022816
Identifier:
DCAR_022816.mRNA-protein
Sequence:
MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRIL
RAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEV
DTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARV
KNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDEL
GQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKI
RTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERT
VFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIV
RLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIR
DGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRA
LRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF*
Sequence Length:
490
Sequence Checksum:
338b1becd63dfebec06a84913ad46851
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_022816, derives from mRNA, DCAR_022816. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q06364 (Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (26S proteasome regulatory subunit RPN3) (Nuclear antigen 21D7))
HSP 1 Score: 997.653 bits (2578), Expect = 0.000e+0
Identity = 485/489 (99.18%), Postives = 485/489 (99.18%), Query Frame = 0
Match: Q06364 (Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (26S proteasome regulatory subunit RPN3) (Nuclear antigen 21D7))
HSP 1 Score: 997.653 bits (2578), Expect = 0.000e+0
Identity = 485/489 (99.18%), Postives = 485/489 (99.18%), Query Frame = 0
Query: 1 MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATT LAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKES LQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYF LTNAVRIGDLELFR VADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF
Sbjct: 1 MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTTLAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESXLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFXLTNAVRIGDLELFRXVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5EWN7 ((Winged helix-turn-helix DNA-binding domain containing protein {ECO:0000313|EMBL:PON89952.1}))
HSP 1 Score: 878.241 bits (2268), Expect = 0.000e+0
Identity = 443/489 (90.59%), Postives = 473/489 (96.73%), Query Frame = 0
Match: A0A2P5EWN7 ((Winged helix-turn-helix DNA-binding domain containing protein {ECO:0000313|EMBL:PON89952.1}))
HSP 1 Score: 878.241 bits (2268), Expect = 0.000e+0
Identity = 443/489 (90.59%), Postives = 473/489 (96.73%), Query Frame = 0
Query: 1 MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
MTQDVEMKE+ APSNSV +ATPSTLQHLKEIASLIE+GAYAREVRRI+RAVRLT+ALR+KL ASV++AFLNF+L P SEVH+RL+SY+PKEDEHDM+VDTA SAT A KHSLPELEIYCYLL LIFLIDQK+YSEAKAC+SASIAR+KNLNRRTV+VLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQ+GMEKALRPYFELTNAVRIGDLELFR+VA+KF++TF +DRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVA+KLRLDS NPVADAESIVSKAIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ AF++RIAFCLN+HNEAVRALRFP NSHK+KESAEKRRERQQQEQELAKHIAEEDDD+F
Sbjct: 1 MTQDVEMKELQVQAPSNSVPSATPSTLQHLKEIASLIETGAYAREVRRIVRAVRLTMALRRKLKASVLSAFLNFALSPASEVHSRLSSYIPKEDEHDMDVDTATSATQAPVKHSLPELEIYCYLLALIFLIDQKRYSEAKACASASIARLKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQRGMEKALRPYFELTNAVRIGDLELFRSVAEKFSNTFNSDRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQTAFDTRIAFCLNLHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 489
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RHQ2 ((26S proteasome non-ATPase regulatory subunit 3 like {ECO:0000313|EMBL:PSS29528.1}))
HSP 1 Score: 875.544 bits (2261), Expect = 0.000e+0
Identity = 443/489 (90.59%), Postives = 470/489 (96.11%), Query Frame = 0
Match: A0A2R6RHQ2 ((26S proteasome non-ATPase regulatory subunit 3 like {ECO:0000313|EMBL:PSS29528.1}))
HSP 1 Score: 875.544 bits (2261), Expect = 0.000e+0
Identity = 443/489 (90.59%), Postives = 470/489 (96.11%), Query Frame = 0
Query: 1 MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
MTQDVEMKE+PAP SNSVT+A PSTLQHLKEIASLIE+GAYAREVRRI+RA+RLTI LR+KL ASV+ AFLNF+LVPGSEVH+RL+SYLPKEDEHDMEVDTA SAT A KHSLPELEIYCYLLVLIFLIDQK+Y+EAKACSSASIAR+KNLNRRT++VLA++LYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP+AALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVR+GDLELF+ V +KF+STF++DRT NLIVRLRHNVIRTGLRNISISYSRISL DVA+KLRLDS N VADAESIVSKAIRDGAIDAT+DHA GWMVSKETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFP NSHK+KESAEKRRERQQQEQELAKHIAEEDDDEF
Sbjct: 1 MTQDVEMKELPAP--SNSVTSAGPSTLQHLKEIASLIETGAYAREVRRIVRAIRLTITLRRKLKASVLCAFLNFALVPGSEVHSRLSSYLPKEDEHDMEVDTATSATQAPVKHSLPELEIYCYLLVLIFLIDQKRYNEAKACSSASIARLKNLNRRTIDVLAAKLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRVGDLELFKTVTEKFSSTFSSDRTQNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANSVADAESIVSKAIRDGAIDATLDHAKGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDEF 487
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R6W7 ((26S proteasome non-ATPase regulatory subunit 3 like {ECO:0000313|EMBL:PSS21760.1}))
HSP 1 Score: 874.774 bits (2259), Expect = 0.000e+0
Identity = 442/489 (90.39%), Postives = 472/489 (96.52%), Query Frame = 0
Match: A0A2R6R6W7 ((26S proteasome non-ATPase regulatory subunit 3 like {ECO:0000313|EMBL:PSS21760.1}))
HSP 1 Score: 874.774 bits (2259), Expect = 0.000e+0
Identity = 442/489 (90.39%), Postives = 472/489 (96.52%), Query Frame = 0
Query: 1 MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
MTQDVEMKE PA SNS+T+A PSTLQHLKEIASLIE+GAYAREVRRI+RA+RLTI LR+KL +SV+ +FLNF+LVPGSEVH+RL+SYLPKEDEHDMEVDTA SAT A KHSLPEL+IYCYLLVLIFLIDQK+Y+EAKACSSAS+AR+KNLNRRT++VLA+RLYFYYSLSYELTGDLAEIRGNLLALHR+ATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVR+GDLELF+ VA+KF+STF++DRT NLIVRLRHNVIRTGLRNISISYSRISLVDVA+KLRLDS NPVADAESIVSKAIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFP NSHK+KESAEKRRERQQQEQELAKHIAEEDDDEF
Sbjct: 1 MTQDVEMKE--QPALSNSITSAGPSTLQHLKEIASLIETGAYAREVRRIVRAIRLTIMLRRKLKSSVLCSFLNFALVPGSEVHSRLSSYLPKEDEHDMEVDTAASATQAPVKHSLPELDIYCYLLVLIFLIDQKRYNEAKACSSASVARLKNLNRRTIDVLAARLYFYYSLSYELTGDLAEIRGNLLALHRVATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRVGDLELFKTVAEKFSSTFSSDRTQNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDEF 487
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5EC09 ((Winged helix-turn-helix DNA-binding domain containing protein {ECO:0000313|EMBL:PON83040.1}))
HSP 1 Score: 871.692 bits (2251), Expect = 0.000e+0
Identity = 442/489 (90.39%), Postives = 474/489 (96.93%), Query Frame = 0
Match: A0A2P5EC09 ((Winged helix-turn-helix DNA-binding domain containing protein {ECO:0000313|EMBL:PON83040.1}))
HSP 1 Score: 871.692 bits (2251), Expect = 0.000e+0
Identity = 442/489 (90.39%), Postives = 474/489 (96.93%), Query Frame = 0
Query: 1 MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
MTQDVEMKE+ AP SNSV++ATPSTLQHLKEIASLIE+GAYAREVRRI+RAVRLT+ALR+KL ASV++AFLNF+L PGSEVH+RL+S++PKEDEHDM+VDTA SAT A KHSLPELEIYCYLLVLIFLIDQK+Y+EAKAC+S SIAR+KNLNRRTV+VLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYL YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFR+VA+KF++TF +DRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVA+KLRLDS NPVADAESIVSKAIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ AF++RIAFCLN+HNEAVRALRFP NSHK+KESAEKRRERQQQEQELAKHIAEEDDD+F
Sbjct: 1 MTQDVEMKELQAP--SNSVSSATPSTLQHLKEIASLIETGAYAREVRRIVRAVRLTMALRRKLKASVLSAFLNFALSPGSEVHSRLSSFVPKEDEHDMDVDTATSATQAPVKHSLPELEIYCYLLVLIFLIDQKRYNEAKACASPSIARLKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLDYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRSVAEKFSNTFNSDRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQTAFDTRIAFCLNLHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 487
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5B8H8 ((Winged helix-turn-helix DNA-binding domain containing protein {ECO:0000313|EMBL:PON45071.1}))
HSP 1 Score: 871.692 bits (2251), Expect = 0.000e+0
Identity = 438/489 (89.57%), Postives = 473/489 (96.73%), Query Frame = 0
Match: A0A2P5B8H8 ((Winged helix-turn-helix DNA-binding domain containing protein {ECO:0000313|EMBL:PON45071.1}))
HSP 1 Score: 871.692 bits (2251), Expect = 0.000e+0
Identity = 438/489 (89.57%), Postives = 473/489 (96.73%), Query Frame = 0
Query: 1 MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
MTQDVEM+E+ APSNSV++ATPSTLQHLKEIASLIE+GAYAREVRRI+RAVRLT+ALR+KL ASV++ FL+F+L PGSEVH RL+SY+PKEDEHDM+VDTA SAT A KHSLPELEIYCYLLVLIFL+DQK+YSEAKAC+SASIAR+KNLNRRTV+VLASRLYF+YSLSYELTGDLAEIRG LLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSN+QFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQ+GMEKALRPYFELTNAVRIGDLELFR+VA+KF++TF +DRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVA+KLRLDS NPVADAESIVSKAIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ AF++RIAFCLN+HNEAVRALRFP NSHK+KESAEKRRERQQQEQELAKHIAEEDDD+F
Sbjct: 1 MTQDVEMRELQVQAPSNSVSSATPSTLQHLKEIASLIETGAYAREVRRIVRAVRLTMALRRKLKASVLSVFLSFALSPGSEVHTRLSSYIPKEDEHDMDVDTATSATQAPVKHSLPELEIYCYLLVLIFLVDQKRYSEAKACASASIARLKNLNRRTVDVLASRLYFFYSLSYELTGDLAEIRGPLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNEQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQRGMEKALRPYFELTNAVRIGDLELFRSVAEKFSNTFNSDRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQTAFDTRIAFCLNLHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 489
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5DSE5 ((Winged helix-turn-helix DNA-binding domain containing protein {ECO:0000313|EMBL:PON76215.1}))
HSP 1 Score: 870.922 bits (2249), Expect = 0.000e+0
Identity = 441/489 (90.18%), Postives = 473/489 (96.73%), Query Frame = 0
Match: A0A2P5DSE5 ((Winged helix-turn-helix DNA-binding domain containing protein {ECO:0000313|EMBL:PON76215.1}))
HSP 1 Score: 870.922 bits (2249), Expect = 0.000e+0
Identity = 441/489 (90.18%), Postives = 473/489 (96.73%), Query Frame = 0
Query: 1 MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
MTQDVEMKE+ AP SNSV++ATPSTLQHLKEIASLIE+GAYAREVRRI+RAVRLT+ALR+KL ASV++AFLNF L PGSEVH+RL+S++PKEDEHDM+VDTA SAT A KHSLPELEIYCYLLVL+FLIDQK+YSEAKAC+S SIAR+KNLNRRTV+VLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYN YDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFR+QCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFR+VA+KF++TF +DRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVA+KLRLDS NPVADAESIVSKAIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ AF++RIAFCLN+HNEAVRALRFP NSHK+KESAEKRRERQQQEQELAKHIAEEDDD+F
Sbjct: 1 MTQDVEMKELQAP--SNSVSSATPSTLQHLKEIASLIETGAYAREVRRIVRAVRLTMALRRKLKASVLSAFLNFVLSPGSEVHSRLSSFVPKEDEHDMDVDTATSATQAPVKHSLPELEIYCYLLVLLFLIDQKRYSEAKACASPSIARLKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNQYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRSVAEKFSNTFNSDRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQTAFDTRIAFCLNLHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 487
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I0Z2 (PCI domain-containing protein {ECO:0000259|PROSITE:PS50250})
HSP 1 Score: 867.07 bits (2239), Expect = 0.000e+0
Identity = 438/489 (89.57%), Postives = 468/489 (95.71%), Query Frame = 0
Match: F6I0Z2 (PCI domain-containing protein {ECO:0000259|PROSITE:PS50250})
HSP 1 Score: 867.07 bits (2239), Expect = 0.000e+0
Identity = 438/489 (89.57%), Postives = 468/489 (95.71%), Query Frame = 0
Query: 1 MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
MTQDVEMKE+PAP SNSVT+ TPSTLQHLKEIASLIES AYAREVRRI+RA+RLT+ LR+KL A+V++ FLN++L PGSEVH RL+SYLPKEDEHDMEVDTA SAT AKH LPELEIYCYLLVLIFLIDQKKY EAKACS+ASI R+KNLNRRT++VLASRLY YYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV+ALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELF++VA+KF++TF++DRTHNLIVRLRHNVIRTGLRNISISYSRISL DVA+KLRLDS NP+ADAESIV+KAIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ AFNSRIAFCLNMHN+AVRALRFP NSHK+KESAEKRRERQQQEQELAKHIAEEDDDEF
Sbjct: 1 MTQDVEMKELPAP--SNSVTSTTPSTLQHLKEIASLIESSAYAREVRRIVRAIRLTMILRRKLKATVLSGFLNYALNPGSEVHTRLSSYLPKEDEHDMEVDTATSATQTPAKHPLPELEIYCYLLVLIFLIDQKKYKEAKACSAASITRLKNLNRRTIDVLASRLYSYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVSALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSTTFSSDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLDSANPIADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQFAFNSRIAFCLNMHNDAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDEF 487
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438DSZ2 ((Putative 26S proteasome non-ATPase regulatory subunit 3 {ECO:0000313|EMBL:RVW38609.1}))
HSP 1 Score: 865.914 bits (2236), Expect = 0.000e+0
Identity = 437/489 (89.37%), Postives = 468/489 (95.71%), Query Frame = 0
Match: A0A438DSZ2 ((Putative 26S proteasome non-ATPase regulatory subunit 3 {ECO:0000313|EMBL:RVW38609.1}))
HSP 1 Score: 865.914 bits (2236), Expect = 0.000e+0
Identity = 437/489 (89.37%), Postives = 468/489 (95.71%), Query Frame = 0
Query: 1 MTQDVEMKEVPAPAPSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
MTQDVEMKE+PAP SNSVT+ TPSTLQHLKEIASLIES AYAREVRRI+RA+RLT+ LR+KL A+V++ FLN++L PGSEVH RL+SYLPKEDEHDMEVDTA SAT AKH LPELEIYCYLLVLIFLIDQKKY EAKACS+ASI R+KNLNRRT++VLASRL+ YYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV+ALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELF++VA+KF++TF++DRTHNLIVRLRHNVIRTGLRNISISYSRISL DVA+KLRLDS NP+ADAESIV+KAIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ AFNSRIAFCLNMHN+AVRALRFP NSHK+KESAEKRRERQQQEQELAKHIAEEDDDEF
Sbjct: 1 MTQDVEMKELPAP--SNSVTSTTPSTLQHLKEIASLIESSAYAREVRRIVRAIRLTMILRRKLKATVLSGFLNYALNPGSEVHTRLSSYLPKEDEHDMEVDTATSATQTPAKHPLPELEIYCYLLVLIFLIDQKKYKEAKACSAASITRLKNLNRRTIDVLASRLFSYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVSALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSTTFSSDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLDSANPIADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQFAFNSRIAFCLNMHNDAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDEF 487
BLAST of DCAR_022816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XSF1 ((26S proteasome regulatory subunit, C-terminal {ECO:0000313|EMBL:KVH96019.1}))
HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 443/490 (90.41%), Postives = 471/490 (96.12%), Query Frame = 0
Match: A0A103XSF1 ((26S proteasome regulatory subunit, C-terminal {ECO:0000313|EMBL:KVH96019.1}))
HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 443/490 (90.41%), Postives = 471/490 (96.12%), Query Frame = 0
Query: 1 MTQDVEMKEVPAPA-PSNSVTAATPSTLQHLKEIASLIESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEHDMEVDTAMSATTALAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRAVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
MTQDVEMKE PA PSNSV++ TP LQ+LKEIA+LIE+GAYAREVRRILRAVRLTIALR+KL ASVV++FLNF+L PGSE H RL+SYLPK+D++DMEVDTA SAT A KHS PELEIYCYLLVLIFLIDQKKYSEAKACSSASIAR+KNLNRRTV+VLASRLYFYYSLSYELTGDL+EIRGNLLALHR+ATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELF+ VA+KF++TF++DRT+NLIVRLRHNVIRTGLRNISISYSRISLVD+A+KLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFP NSHK+KESAEKRRERQQQEQELAKHIAEEDDD+F
Sbjct: 1 MTQDVEMKEQQIPAAPSNSVSSPTP-ILQNLKEIAALIEAGAYAREVRRILRAVRLTIALRRKLKASVVSSFLNFALAPGSETHTRLSSYLPKDDQNDMEVDTASSATQATVKHS-PELEIYCYLLVLIFLIDQKKYSEAKACSSASIARLKNLNRRTVDVLASRLYFYYSLSYELTGDLSEIRGNLLALHRVATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKNVAEKFSTTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDIAKKLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 488
| Match Name | Stats | Description |
|---|---|---|
| Q06364 | E-Value: 0.000e+0, PID: 99.18 | Probable 26S proteasome non-ATPase regulatory subu... [more] |
| A0A2P5EWN7 | E-Value: 0.000e+0, PID: 90.59 | (Winged helix-turn-helix DNA-binding domain contai... [more] |
| A0A2R6RHQ2 | E-Value: 0.000e+0, PID: 90.59 | (26S proteasome non-ATPase regulatory subunit 3 li... [more] |
| A0A2R6R6W7 | E-Value: 0.000e+0, PID: 90.39 | (26S proteasome non-ATPase regulatory subunit 3 li... [more] |
| A0A2P5EC09 | E-Value: 0.000e+0, PID: 90.39 | (Winged helix-turn-helix DNA-binding domain contai... [more] |
| A0A2P5B8H8 | E-Value: 0.000e+0, PID: 89.57 | (Winged helix-turn-helix DNA-binding domain contai... [more] |
| A0A2P5DSE5 | E-Value: 0.000e+0, PID: 90.18 | (Winged helix-turn-helix DNA-binding domain contai... [more] |
| F6I0Z2 | E-Value: 0.000e+0, PID: 89.57 | PCI domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A438DSZ2 | E-Value: 0.000e+0, PID: 89.37 | (Putative 26S proteasome non-ATPase regulatory sub... [more] |
| A0A103XSF1 | E-Value: 0.000e+0, PID: 90.41 | (26S proteasome regulatory subunit, C-terminal {EC... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |