Resource Type:
Polypeptide
Name:
DCAR_021375
Identifier:
DCAR_021375.mRNA-protein
Sequence:
MQHHTIGVYRQQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDL
IQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEY
KSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDE
PGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCP
PGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSK
YDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSP
SPSSVMENGMNEASSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHR
FSEHRTSNNPLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNS
LYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTED
SSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNS
QAR*
Sequence Length:
504
Sequence Checksum:
6d04ecf20c78bad2c61ba1d7853cda38
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_021375, derives from mRNA, DCAR_021375. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AXX1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60808.1}))
HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0
Identity = 335/508 (65.94%), Postives = 387/508 (76.18%), Query Frame = 0
Match: A0A5B7AXX1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60808.1}))
HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0
Identity = 335/508 (65.94%), Postives = 387/508 (76.18%), Query Frame = 0
Query: 2 QHHTIGVYRQQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQV-KSEVTEDSSTPHSESADVSG--EGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 503
+H + +QQ T A+PVPPSQYNPLDEPSPLGLRL+KSPSLLDLIQMKLS GN +K+ KKE KG+A S + DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI+ +KA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS+NRRH+LQCPPGLLGKHFEKLIQCDPRLN+LSQQAEI L+SPYFEP+ SVFD+S+ ++N P F+L+D S SG QSSSSKN Q D G +E F ET PSPSSVM+ E S EL L+ D + VPGLHP MSMSDLVSHIEHR SE RTSNN LS +ER+SL++L EIS+CLF+DSQH TSDE+ IM+RVNSL LLQKDP +Q+ + D MD+K + N + +S+V ED +P ES +VSG + MSRKDSVG+LLLNLPRIASLPQF FNI ED ++QAR
Sbjct: 35 EHGPLNKRSKQQRNLGTGAYPVPPSQYNPLDEPSPLGLRLKKSPSLLDLIQMKLSQGNASKVVLQAKKEHKGIAASATTDKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMGMKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASINRRHFLQCPPGLLGKHFEKLIQCDPRLNFLSQQAEIVLESPYFEPKISVFDDSN------ELNDVEGPAFFDLRDAASPSGAQSSSSKNEQQDSVGRPREHFPLET--PSPSSVMDTHAIEEIRISRAEELMRLSNQDQIKVPGLHPLMSMSDLVSHIEHRISEQRTSNNFILSSEERQSLEML-EISRCLFSDSQHASTSDEQCIMSRVNSLCCLLQKDPLAIQNLQVKSDSGPDPDAMDDKRIGEPNSISASTGESKVAEDFPSPEGESGNVSGCKQAPAMSRKDSVGDLLLNLPRIASLPQFLFNIWEDSDNQAR 533
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HYM2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5957226.1}))
HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 324/495 (65.45%), Postives = 371/495 (74.95%), Query Frame = 0
Match: A0A7J7HYM2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5957226.1}))
HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 324/495 (65.45%), Postives = 371/495 (74.95%), Query Frame = 0
Query: 11 QQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVME-NGMNEASSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 503
QQ+ E FP+PPSQYNPLDEPSPLGLRL+KSPSLLDLIQM LS GN K+G KKE + S +NDKLKASNFP++LLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI+AL+A YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS++RRH+LQCP GLLGKHFEKLIQCDPRLN+LSQQ EI L+SPYFEPR S+FD+S++ N ++D+N + R F+L+D S S Q PSPSSVM+ + + E S ELK L D + VP L SMSMSDLVSHIEHRFSE RTSNN LS +ER+SL+ILDEI++CLF+DSQ SDEK IM+RVNSL LLQKD Q+ +G S+D+ +MD K + A +S+V ED +TP SE VS M+RKDSVGELLLNLPRIASLPQF FNISEDFNSQAR
Sbjct: 69 QQECNLELGGFPIPPSQYNPLDEPSPLGLRLKKSPSLLDLIQMTLSQGNSPKVGTQAKKEHNASSVSGANDKLKASNFPSSLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMALEAKYPDDAPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASIHRRHFLQCPQGLLGKHFEKLIQCDPRLNFLSQQGEIVLESPYFEPRISMFDDSNELNREFDLNGEERQAFFDLRDTASPSRAQ-------------------------PSPSSVMDTHAIEEIRSRAEELKRLIEKDQIKVPELRSSMSMSDLVSHIEHRFSEQRTSNNFTLSVEERQSLEILDEITRCLFSDSQLTLASDEKCIMSRVNSLCCLLQKDSMTSQNLQVKGDDSSDV-IMDKKIREPNKLSASDGESKVLEDLTTPESE-PKVS----AMTRKDSVGELLLNLPRIASLPQFLFNISEDFNSQAR 532
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AW36 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60809.1}))
HSP 1 Score: 622.083 bits (1603), Expect = 0.000e+0
Identity = 337/514 (65.56%), Postives = 390/514 (75.88%), Query Frame = 0
Match: A0A5B7AW36 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60809.1}))
HSP 1 Score: 622.083 bits (1603), Expect = 0.000e+0
Identity = 337/514 (65.56%), Postives = 390/514 (75.88%), Query Frame = 0
Query: 2 QHHTIGVYRQQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEIT---LKSPYFEPRTSVFD---ESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQV-KSEVTEDSSTPHSESADVSG--EGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 503
+H + +QQ T A+PVPPSQYNPLDEPSPLGLRL+KSPSLLDLIQMKLS GN +K+ KKE KG+A S + DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI+ +KA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS+NRRH+LQCPPGLLGKHFEKLIQCDPRLN+LSQQAEI L+SPYFEP+ SVFD E+DDG F+L+D S SG QSSSSKN Q D G E FSRET PSPSSVM+ E SS ELK L+ D + VPG HPSMSMSDLVS IEHR SE RTSNN LS +E++SL+IL++I++CLF+DSQ+ TSDE+SIM+RVNSL LLQKDP +Q+ + + D ++D+K +L + +S+ ED P E +DVSG + MSRKDSVGELLLNLPRIASLPQF FNI EDF++QAR
Sbjct: 35 EHGPLNKRSKQQRNLGTGAYPVPPSQYNPLDEPSPLGLRLKKSPSLLDLIQMKLSQGNASKVVLQAKKEHKGIAASATTDKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMGMKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASINRRHFLQCPPGLLGKHFEKLIQCDPRLNFLSQQAEIVLEGLESPYFEPKISVFDDPNETDDGEGHT---------YFDLRDAASPSGAQSSSSKNEQ-DPVGRPPEHFSRET--PSPSSVMDTHAIEEIRSSRAEELKRLSNQDQIKVPGFHPSMSMSDLVSQIEHRISEQRTSNNFILSSEEQQSLEILEDINRCLFSDSQYASTSDEQSIMSRVNSLCCLLQKDPVTVQNLQVKSDNGPD--VIDDKRICELYSMSASAGESKTAEDFPKPEGEPSDVSGRKQAPAMSRKDSVGELLLNLPRIASLPQFLFNILEDFDNQAR 534
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QG52 ((Homeobox protein cut-like {ECO:0000313|EMBL:PSS07561.1}))
HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 317/486 (65.23%), Postives = 372/486 (76.54%), Query Frame = 0
Match: A0A2R6QG52 ((Homeobox protein cut-like {ECO:0000313|EMBL:PSS07561.1}))
HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 317/486 (65.23%), Postives = 372/486 (76.54%), Query Frame = 0
Query: 21 FPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 503
FP+PPSQYNPL+EPSPLGLRL+KSPSLLDLIQM LS GN K+G+ VKKE TS + DKLKASNFPA+ L IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI+ALKA YPDDEPGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFT QAS+NRRH+LQCP GLLGKHFEKLIQCDPRLN+LS Q +I L+SPYFEPRTSVFD+S++ N D+N + F S SG QSS+ N + D G +E F R+T PSPSSVM+ E +S ELK L D + +PGLH SMSMSDLV+HIEHR SE RTSNN LS ++R+SL ILD+IS+CLFTDS+H TSD++ +M+RVNSL+ LLQKD +Q+ +G + +D + + + + K++V +D TP ES VS + MSRKDSVGELLLNLPRIASLPQF FNISED ++QAR
Sbjct: 59 FPIPPSQYNPLEEPSPLGLRLKKSPSLLDLIQMTLSKGNALKVGSQVKKELNAAGTSAAADKLKASNFPASFLSIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMALKANYPDDEPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTCGQASINRRHFLQCPQGLLGKHFEKLIQCDPRLNFLSLQGDIVLESPYFEPRTSVFDDSNEANHGIDLNGEEGQDFF----AGSPSGAQSSAMTNERQDLVGRPRELFPRKT--PSPSSVMDTHAIEGIRTSRFEELKGLLDQDQIKMPGLHSSMSMSDLVTHIEHRISEQRTSNNFTLSDEDRQSLVILDDISRCLFTDSEHASTSDDQCVMSRVNSLFCLLQKDSVTVQNSQVKGDNRSDAMVNNKRLGRSIG------KTKVVDDFITPEDESNPVSKQAPAMSRKDSVGELLLNLPRIASLPQFLFNISEDTDNQAR 532
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WR38 ((Uncharacterized protein {ECO:0000313|EMBL:THG22787.1}))
HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 326/496 (65.73%), Postives = 374/496 (75.40%), Query Frame = 0
Match: A0A4V3WR38 ((Uncharacterized protein {ECO:0000313|EMBL:THG22787.1}))
HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 326/496 (65.73%), Postives = 374/496 (75.40%), Query Frame = 0
Query: 13 QHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSG--EGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 503
Q S + +FP+P SQYNPLDEPSPLGLRL+KSPSLLDLIQM LS GN +K G VKKE K + S++ DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCY+AKHKLVWEVLDGGLKNKIEIQWSDI+ALKA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQAT DFTG QAS +RRH+LQC PGLLGKHFEKLIQCDPRLN+LSQQ EI L+SPYFEPR SVF++S++ N +D+N + FNLQD S SG QSS N Q D G EQF ET PSPSSVM+ E ELK L D + VPGLH SMSMSDLVSHIEHR E RTSNN LS++ER+SL+IL+EIS+CLF+DSQ+ TSDEK IM+RVNSL LLQKDP Q+ +G +++ ++D +T S SES DVSG + M+RKDSVGELLLNLPRIASLPQF FNISEDF++QAR
Sbjct: 51 QCNSGSGSFPIP-SQYNPLDEPSPLGLRLKKSPSLLDLIQMTLSQGNASKFGTQVKKEHKATSASSATDKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYYAKHKLVWEVLDGGLKNKIEIQWSDIMALKANYPDDRPGTLDVVLARQPLFFRETNPQPRKHTLWQATPDFTGGQASNHRRHFLQCLPGLLGKHFEKLIQCDPRLNFLSQQEEIVLESPYFEPRISVFEDSNESNHGFDLNGEEGQAFFNLQDSASPSGGQSSPRTNEQ-DLVGRPPEQFPCET--PSPSSVMDTHAIEEIRIRRVEELKGLINQDQIKVPGLHSSMSMSDLVSHIEHRILEQRTSNNFTLSEEERQSLEILEEISRCLFSDSQYTSTSDEKCIMSRVNSLCCLLQKDPMTAQNSRVKGDNNSFDVMVDKRTGE-------------PNSVSASASESNDVSGCNQAPAMARKDSVGELLLNLPRIASLPQFLFNISEDFDNQAR 529
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LGU2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7135280.1}))
HSP 1 Score: 618.231 bits (1593), Expect = 0.000e+0
Identity = 322/495 (65.05%), Postives = 373/495 (75.35%), Query Frame = 0
Match: A0A834LGU2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7135280.1}))
HSP 1 Score: 618.231 bits (1593), Expect = 0.000e+0
Identity = 322/495 (65.05%), Postives = 373/495 (75.35%), Query Frame = 0
Query: 12 QQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 503
QQ + + +FP+PPSQYNPLDEPSPLGLRL+K+PSLLDLIQM L+ GN K+G KKEQKG S DKLKASNFPA+ L+IGTWEYKSR+EGDLV KCYFAKHKLVWEVLDGGLKNKIEIQWSDI+ALKA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QA++NRRH+LQCP GLLGKHFEKL+QCDPRLN+LSQQ EI L+SPYFEPR SVFD++D+ N D N + +L+D S SG SS + + D G E+F ET PSPSSVM+ E +S ELK L D + VPGLH SMSMSDLVSHIEHR SE RTSNN LS +ERESL+IL+EIS LF+DSQ+ TSDE+ IM+RVNSL LLQKDP Q+ G S+ ++D +T + K++V ED P ES S +G M+RKDSVGELLLNLPRIASLP+F FNISEDF++QAR
Sbjct: 50 QQCDMGSVSFPIPPSQYNPLDEPSPLGLRLKKTPSLLDLIQMTLAKGNSCKVGIHAKKEQKGTTAS---DKLKASNFPASFLRIGTWEYKSRYEGDLVGKCYFAKHKLVWEVLDGGLKNKIEIQWSDIVALKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQATINRRHFLQCPQGLLGKHFEKLMQCDPRLNFLSQQGEIVLESPYFEPRVSVFDDTDEPNHGIDSNGEEGQNYLDLRDAASPSGGLSSPLSDDRQDLLGRPAERFPHET--PSPSSVMDTHAIEEIRNSRFEELKGLIDQDQIKVPGLHSSMSMSDLVSHIEHRISEQRTSNNFTLSAEERESLEILEEISHFLFSDSQYASTSDEQCIMSRVNSLCCLLQKDPMTAQNLQVNKGDSSTGVMVDKRTGEPHSG-----KNKVVEDFVMPDGESNSDSKQGPAMTRKDSVGELLLNLPRIASLPRFLFNISEDFDNQAR 534
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4MRZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9467678.1}) (Fragment))
HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0
Identity = 322/495 (65.05%), Postives = 372/495 (75.15%), Query Frame = 0
Match: A0A6A4MRZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9467678.1}) (Fragment))
HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0
Identity = 322/495 (65.05%), Postives = 372/495 (75.15%), Query Frame = 0
Query: 12 QQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 503
QQ + + +FP+PPSQYNPLDEPSPLGLRL+K+PSLLDLIQM L+ GN +K+G KKE KG S DKLKASNFPA+ LKIGTWEYKSR+EGDLV KCYFAKHKLVWEVLDGGLKNKIEIQWSDI+ALKA YPDDEPGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QA++NRRH+LQCP GLLGKHFEKL+QCDPRLN+LSQQ EI L+SPYFE R SVFD++D N D+N + +L+D S SG SS + + D G E+FS ET PSPSSVM+ E +S ELK L D + VPGLH SMSMSDLVSHIEHR SE RTSNN LS +ERESL+IL+EIS LF+DSQ+ TSDE+ IM+RVNSL LLQKDP Q+ G S+ ++D +T + K++V ED P ES S +G M+RKDSVGELLLNLPRI SLP+F FNISEDF+ QAR
Sbjct: 50 QQCDMGSASFPIPPSQYNPLDEPSPLGLRLKKTPSLLDLIQMTLAKGNSSKVGIDAKKEHKGTTAS---DKLKASNFPASFLKIGTWEYKSRYEGDLVGKCYFAKHKLVWEVLDGGLKNKIEIQWSDIVALKANYPDDEPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQATINRRHFLQCPQGLLGKHFEKLMQCDPRLNFLSQQGEIVLESPYFESRVSVFDDTDKPNHGIDLNGEEGQNYLDLRDAASPSGGLSSPLSDDRQDLLGRPAERFSHET--PSPSSVMDTHAIEEIRNSRFEELKGLIDQDQIKVPGLHSSMSMSDLVSHIEHRISEQRTSNNFTLSAEERESLEILEEISHFLFSDSQYASTSDEQCIMSRVNSLCCLLQKDPMTAQNSQVNKGDSSTGVMVDKRTGEPHSG-----KNKVVEDFVMPDGESNSDSKQGPAMTRKDSVGELLLNLPRITSLPRFLFNISEDFDDQAR 534
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PDA1 ((Homeobox protein cut-like {ECO:0000313|EMBL:PSR89373.1}))
HSP 1 Score: 615.92 bits (1587), Expect = 0.000e+0
Identity = 318/488 (65.16%), Postives = 367/488 (75.20%), Query Frame = 0
Match: A0A2R6PDA1 ((Homeobox protein cut-like {ECO:0000313|EMBL:PSR89373.1}))
HSP 1 Score: 615.92 bits (1587), Expect = 0.000e+0
Identity = 318/488 (65.16%), Postives = 367/488 (75.20%), Query Frame = 0
Query: 19 TAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNNPLSKDE-RESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 503
FP+PPS+YNPLDEPSPLGLRL+KSPSLLDLIQM LS GN K+G+ VKKE K TS + DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI ALKA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS+NRRH+LQCP GLLGKHFEKLIQCDPRL++LSQQ FEPR+SVFD++++ N D+N D F S SG QSS+ N + D G +EQF RET PSPSSVM+ E +S ELK L D + VPGLH SMSMSDLV+HIEHR SE RTSNN + DE ++SL ILD+IS+CLFTDS H TSDE+ +M+RVNSL+ LLQKDP +Q+ +G +S+D + D + + K++V +D TP ES VS + MSRKDSVGELLLNLPRIASLPQF FNISED +QAR
Sbjct: 57 VTFPIPPSEYNPLDEPSPLGLRLKKSPSLLDLIQMTLSQGNALKVGSQVKKEHKATGTSAAADKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDITALKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASINRRHFLQCPQGLLGKHFEKLIQCDPRLHFLSQQG--------FEPRSSVFDDTNEANHGIDLNGDEGQDFF----AGSPSGAQSSAMTNERQDLVGRPREQFPRET--PSPSSVMDTHAIEGIRTSRFEELKGLLDQDQIKVPGLHSSMSMSDLVTHIEHRISEQRTSNNFILPDEDQQSLAILDDISRCLFTDSHHASTSDEQRVMSRVNSLFCLLQKDPVTVQNSQVKGDNSSDAMVDDKRLGRLIG------KTKVVDDFITPEDESNSVSKQAPAMSRKDSVGELLLNLPRIASLPQFLFNISEDTGNQAR 524
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H2M2 ((Uncharacterized protein {ECO:0000313|EMBL:GFZ17265.1}))
HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 317/488 (64.96%), Postives = 367/488 (75.20%), Query Frame = 0
Match: A0A7J0H2M2 ((Uncharacterized protein {ECO:0000313|EMBL:GFZ17265.1}))
HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 317/488 (64.96%), Postives = 367/488 (75.20%), Query Frame = 0
Query: 19 TAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNNPLSKDE-RESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 503
FP+PPS+YNPLDEPSPLGLRL+KSPSLLDLIQM LS GN K+G+ V KE K TS + DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI ALKA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS+NRRH+LQCP GLLGKHFEKLIQCDPRLN+LSQQ FEPR+SVFD++++ N D+N + F S SG QSS+ N + D G +EQF RET PSPSSVM+ E +S ELK L D + VPGLH SMSMSDLV+HIEHR SE RTSNN + DE ++SL ILD+IS+CLFTDS H TSDE+ +M+RVNSL+ LLQKDP +Q+ +G +S+D + D + + K++V +D TP ES VS + MSRKDSVGELLLNLPRIASLPQF FNISED ++QAR
Sbjct: 57 VTFPIPPSEYNPLDEPSPLGLRLKKSPSLLDLIQMTLSQGNALKVGSQVNKEHKATGTSAAADKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDITALKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASINRRHFLQCPQGLLGKHFEKLIQCDPRLNFLSQQG--------FEPRSSVFDDTNEANHGIDLNGEEGQDFF----AGSPSGAQSSAMTNERQDLVGRPREQFPRET--PSPSSVMDTHAIEGIRTSRFEELKGLLDQDQIKVPGLHSSMSMSDLVTHIEHRISEQRTSNNFILPDEDQQSLAILDDISRCLFTDSHHASTSDEQCVMSRVNSLFCLLQKDPVTVQNSQVKGDNSSDAMVDDKRIGRLIG------KTKVVDDFITPEDESNSVSKQAPAMSRKDSVGELLLNLPRIASLPQFLFNISEDSDNQAR 524
BLAST of DCAR_021375 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BBK0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8540565.1}))
HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 330/492 (67.07%), Postives = 378/492 (76.83%), Query Frame = 0
Match: A0A5J5BBK0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8540565.1}))
HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 330/492 (67.07%), Postives = 378/492 (76.83%), Query Frame = 0
Query: 18 TTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRP-PIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSG--EGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 503
T AFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQM+LS GN +K+G KKE KG+ S++ DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI+A+KA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS++RRH+LQCP GLLGKHFEKLIQCDPRLN+LSQ+ EI L+SPYFEP+ SVFD+S++ N DG F+L+D S SG QSSSSK Q D G +E F RET PSPSSVM+ E S ELK L+ D + VPGLHPS+SMSDLVS IEHR SE R+SNN LS +ERESL+IL+EISKCLF+++Q TSDE+ IM+RVNSL LLQKD +Q+ F+ D+T DNK + P S + ES DVSG + MSRKDSVG+LLLNLPRIASLPQF FNISEDF++QAR
Sbjct: 56 TGAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMRLSQGNVSKVGPEAKKEHKGIPASSTTDKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMAMKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASIHRRHFLQCPQGLLGKHFEKLIQCDPRLNFLSQKPEIVLESPYFEPKISVFDDSNELN-------DGEGHSFFDLRDAASPSGAQSSSSKIEQQDSVGRPREHFPRET--PSPSSVMDTHAIEEIRISRAEELKRLSDHDQIKVPGLHPSISMSDLVSQIEHRISEQRSSNNFILSSEERESLEILEEISKCLFSETQLASTSDEQCIMSRVNSLCCLLQKDSLAVQNSQFKSDSGPDIT--DNKRTGE-----PNTMSVSAGECKVAEGESGDVSGCKQAPAMSRKDSVGDLLLNLPRIASLPQFLFNISEDFDNQAR 531
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AXX1 | E-Value: 0.000e+0, PID: 65.94 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6080... [more] |
| A0A7J7HYM2 | E-Value: 0.000e+0, PID: 65.45 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5957... [more] |
| A0A5B7AW36 | E-Value: 0.000e+0, PID: 65.56 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6080... [more] |
| A0A2R6QG52 | E-Value: 0.000e+0, PID: 65.23 | (Homeobox protein cut-like {ECO:0000313|EMBL:PSS07... [more] |
| A0A4V3WR38 | E-Value: 0.000e+0, PID: 65.73 | (Uncharacterized protein {ECO:0000313|EMBL:THG2278... [more] |
| A0A834LGU2 | E-Value: 0.000e+0, PID: 65.05 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7135... [more] |
| A0A6A4MRZ5 | E-Value: 0.000e+0, PID: 65.05 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9467... [more] |
| A0A2R6PDA1 | E-Value: 0.000e+0, PID: 65.16 | (Homeobox protein cut-like {ECO:0000313|EMBL:PSR89... [more] |
| A0A7J0H2M2 | E-Value: 0.000e+0, PID: 64.96 | (Uncharacterized protein {ECO:0000313|EMBL:GFZ1726... [more] |
| A0A5J5BBK0 | E-Value: 0.000e+0, PID: 67.07 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8540... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |