MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGD
DFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAI
MTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLE
RLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGAD
SGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQ
QLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVG
EDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSP
PGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDRASDSSSPVAAAVENREA
TETRVCEGEVS*
| Relationships |
|---|
| The polypeptide, DCAR_021019, derives from mRNA, DCAR_021019. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: B9SPU2 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})
HSP 1 Score: 513.457 bits (1321), Expect = 4.833e-180
Identity = 256/384 (66.67%), Postives = 303/384 (78.91%), Query Frame = 0
Query: 28 TMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDRASDSSSPVAAAVENREATETRVCEGEVS 411
+KKK++G +SRIWN +FRLHGDDFEKRLQ+ISKEEAA+++R+K+RS+ R +T++LIIFSV+ E+ AVCYAIMTTRS+DLNWKMRA RV PMFLLP LSS++YSA VSFTRM DRKDQKTLERLRAER KI+ELKEKTNYY TQQLIQRYDPDPAAKAAAAT+LASKLGADSGLK+Y+GD++KLN TGKS+DVE Q+SGLRNRKQ +RSSS S+ + E++ +EG + + H+Q+VVEH NP + DGGWIAR+AALLVGEDPTQSYALICGNC MHNGLARKED+PYITYYCPHC+ALN+PKQLE S +SPI G LK V N S P D S SP A E RE TE R+ G++S
Sbjct: 19 VVKKKRKGFMSRIWNGIFRLHGDDFEKRLQNISKEEAAVLSRMKKRSLTWRKMTRHLIIFSVIFEVIAVCYAIMTTRSMDLNWKMRAFRVLPMFLLPALSSIAYSAFVSFTRMCDRKDQKTLERLRAERQAKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYVGDEAKLNTPTGKSNDVEYAQASGLRNRKQVQTRSSSAGSSPVHHSNEEIICSPQSEGLETSEHNQLVVEHHNPQASTMHDGGWIARLAALLVGEDPTQSYALICGNCRMHNGLARKEDFPYITYYCPHCHALNQPKQLEQR----GSGSNSPILGGLKDGGNAVVVNNASNPMGDSTVPSKSPATADSEIREVTE-RLVAGDLS 397
Match: A0A4S4DJA8 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})
HSP 1 Score: 505.368 bits (1300), Expect = 9.875e-177
Identity = 268/411 (65.21%), Postives = 316/411 (76.89%), Query Frame = 0
Query: 1 MATDSKKDQKEVAEIAGDLSATASEEK----TMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQH-AATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSS-LVSSPISGPLKPVDEVSVDQNVSKPTSDRASDSSSPVAAAVENREATETRV 405
MA +S K Q + L A+E+K +KKK+RG++SRIWN +FRLHGDDFEKRLQ+ISKEEAA+VA++K+RS + R + ++LIIFSV+ E+ AV YAIMTTRS+DLNWKMRA RV PMFLLP LSS++YSA+VSFTRM DRKDQKTLERLR ER KI+ELKEKTNYY TQQLIQRYDPDPAAKAAAAT+LASKLGADSGLKLY+GD+S LNP T KS+DVE VQSSGLRNRKQ +RSSS S V Q E++ + A EG+D + +Q+VVEH P S DGGWIARIAALLVGEDPTQSYALICGNCHMHNGLAR+ED+PYITYYCPHCNALNR KQ EG S +VSS ++ + P+ + VS SD SSSP+A+ VE E +ET V
Sbjct: 1 MAGESDKAQ----DTGKSLDVPATEKKDSVTVVKKKQRGVISRIWNRLFRLHGDDFEKRLQNISKEEAAVVAKMKKRSQSWRRMIRHLIIFSVVFEIIAVGYAIMTTRSVDLNWKMRAFRVLPMFLLPALSSVTYSALVSFTRMCDRKDQKTLERLRTERQAKIDELKEKTNYYSTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKLYVGDESNLNP-TAKSNDVELVQSSGLRNRKQLHTRSSSAGSTVSQHSNEELLHNTAGIEGADTSNCNQLVVEHHQPGST-THDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARQEDFPYITYYCPHCNALNRSKQQEGVPNSDSPRIVSSVMASNVNPI------RTVSGTMSDGTPVSSSPLASVVETMEVSETVV 399
Match: A0A7J7GVM6 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})
HSP 1 Score: 505.368 bits (1300), Expect = 1.151e-176
Identity = 268/411 (65.21%), Postives = 316/411 (76.89%), Query Frame = 0
Query: 1 MATDSKKDQKEVAEIAGDLSATASEEK----TMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQH-AATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSS-LVSSPISGPLKPVDEVSVDQNVSKPTSDRASDSSSPVAAAVENREATETRV 405
MA +S K Q + L A+E+K +KKK+RG++SRIWN +FRLHGDDFEKRLQ+ISKEEAA+VA++K+RS + R + ++LIIFSV+ E+ AV YAIMTTRS+DLNWKMRA RV PMFLLP LSS++YSA+VSFTRM DRKDQKTLERLR ER KI+ELKEKTNYY TQQLIQRYDPDPAAKAAAAT+LASKLGADSGLKLY+GD+S LNP T KS+DVE VQSSGLRNRKQ +RSSS S V Q E++ + A EG+D + +Q+VVEH P S DGGWIARIAALLVGEDPTQSYALICGNCHMHNGLAR+ED+PYITYYCPHCNALNR KQ EG S +VSS ++ + P+ + VS SD SSSP+A+ VE E +ET V
Sbjct: 1 MAGESDKAQ----DTGKSLDVPATEKKDSVTVVKKKQRGVISRIWNRLFRLHGDDFEKRLQNISKEEAAVVAKMKKRSQSWRRMIRHLIIFSVVFEIIAVGYAIMTTRSVDLNWKMRAFRVLPMFLLPALSSVTYSALVSFTRMCDRKDQKTLERLRTERQAKIDELKEKTNYYSTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKLYVGDESNLNP-TAKSNDVELVQSSGLRNRKQLHTRSSSAGSTVSQHSNEELLHNTAGIEGADTSNCNQLVVEHHQPGST-THDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARQEDFPYITYYCPHCNALNRSKQQEGVPNSDSPRIVSSVMASNVNPI------RTVSGTMSDGTPVSSSPLASVVETVEVSETVV 399
Match: A0A6N2BQM9 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})
HSP 1 Score: 502.671 bits (1293), Expect = 9.648e-176
Identity = 272/402 (67.66%), Postives = 311/402 (77.36%), Query Frame = 0
Query: 1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLE----GSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPVAAAVE 396
MA + K+ +VAE S+T +EEKT KKKK+G S IWN +FR DDFEKRLQHISKEEAA++AR+ +RS N R +T++LI+ SV+ E+ AV YAIMTTRSLDLNWKMRALRV PMFLLP LS ++YSAI SFTRM +RKDQKTLE+LRAER KI ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLG D+GLK+Y+GDD+K N TGKS+DVE VQS+GLRNRKQ +RSSS SAV+ EM+Q A EGSDM +H Q VVEH NPT QDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKED+PYITYYCPHC+ALNRPKQL+ G+S P +S L VD V + V T D+ AS S SPVAA VE
Sbjct: 1 MAAEPTKEHVDVAETEPVASSTDNEEKTKKKKKKGFFSMIWNSLFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIVLSVIFEVIAVGYAIMTTRSLDLNWKMRALRVLPMFLLPGLSFITYSAIGSFTRMCERKDQKTLEKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNDVEVVQSNGLRNRKQ--ARSSSPESAVIDHPGAEMLQQAQLEGSDMMQHQQTVVEHYNPTGSSTQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPYITYYCPHCHALNRPKQLDDRVSGTSTPNLGSTTS-----LADVDSV---KQVGGSTPDKIPASASGSPVAARVE 392
Match: A0A3Q7G6Q7 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})
HSP 1 Score: 499.59 bits (1285), Expect = 1.709e-174
Identity = 271/402 (67.41%), Postives = 311/402 (77.36%), Query Frame = 0
Query: 1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLE----GSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPVAAAVE 396
MA + K+ +VAE S+T +EEKT KKKK+G S IWN +FR DDFEKRLQHISKEEAA++AR+ +RS N R +T++LI+ SV+ E+ AV YAIMTTRSL+LNWKMRALRV PMFLLP LS ++YSAI SFTRM +RKDQKTLE+LRAER KI ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLG D+GLK+Y+GDD+K N TGKS+ VE VQS+GLRNRKQ +RSSS SAV+ EM+Q A EGSDM +H Q VVEH NPT QDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKED+PYITYYCPHC+ALNRPKQL+ G+S P +S L VD V + VS T D+ AS S SPVAA VE
Sbjct: 1 MAAEPTKEHIDVAETEPVASSTDNEEKTKKKKKKGFFSMIWNSLFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIVLSVIFEVIAVGYAIMTTRSLELNWKMRALRVLPMFLLPGLSFITYSAIGSFTRMCERKDQKTLEKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNGVEVVQSNGLRNRKQ--ARSSSPESAVIDHPGAEMLQQAQLEGSDMMQHQQTVVEHYNPTGSSTQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPYITYYCPHCHALNRPKQLDDRVSGTSTPNLGSTTS-----LADVDSV---KQVSGSTPDKIPASASGSPVAAPVE 392
Match: A0A2G3CMU7 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})
HSP 1 Score: 493.812 bits (1270), Expect = 3.821e-172
Identity = 264/398 (66.33%), Postives = 310/398 (77.89%), Query Frame = 0
Query: 1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPVAAAVE 396
MA + K+ +VA+ AT +EEKT K+KK+G SR+WN +FR DDFEKRLQHISKEEAA++AR+ +RS N R +T++LII SVL E+ AV YAIMTTRSL+L+WKMRALRV PMFLLP LS L+YSAI SFT+M +RKDQKTLE+LRAER KI ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLG D+GLK+Y+GDD+K N TGKS+DVE VQS+GLRNRKQ +RSSS SAVM EM+Q+ EGSDM +H QMVVEH NPT +QDGGW+ARIAALLVGEDPTQSYALICGNCHMHNGLARKED+P+ITYYCPHC+ALNRPKQL+ S +P G + +V + + V T D+ AS S SPVA VE
Sbjct: 1 MAAEPTKEHVDVADTEPVTLATDNEEKTKKEKKKGFFSRMWNSIFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIILSVLFEVIAVGYAIMTTRSLELDWKMRALRVLPMFLLPGLSFLTYSAIGSFTKMCERKDQKTLEKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNDVEVVQSTGLRNRKQ--ARSSSPESAVMDHPGTEMLQNTQLEGSDMTQHQQMVVEHYNPTGSSSQDGGWLARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPFITYYCPHCHALNRPKQLDDR----VSGTGTPNLGSATALADVHLVKQVGGSTPDKIPASASGSPVATPVE 392
Match: A0A0V0IL11 ((Putative ovule protein {ECO:0000313|EMBL:JAP33333.1}))
HSP 1 Score: 493.426 bits (1269), Expect = 1.463e-171
Identity = 253/396 (63.89%), Postives = 306/396 (77.27%), Query Frame = 0
Query: 1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDRASDSSSPVAAAVE 396
MAT+S+ D + A A +++T +E KT KKKK+G+LSR+WN +F H DDFEKRLQHISKEEAA++AR +RS + R ++++LII SVL E+ AV YA+MTTRSL+LNWKMRALRV PMFLLP LS +YS + SFTRM +++DQKTLERLRAER KI+ELKEKTN+YITQQLIQRYDPDPA+KAAAAT+LASKLGAD+GLK+Y+GD+SK N G S+DVE +Q +GLRNRKQ +RS S SAV+ EGEM+ EGS M +H QM+VEH NPTS+ AQDGGW+ARIAALLVGEDPTQSYALIC NCHMHNGLARKE+ PYITYYCPHCNALN PKQL + SSL++ + + D V D S ++R S SSSP A E
Sbjct: 1 MATESENDLGDTAGTA-PVTSTDNEAKTKKKKKKGLLSRMWNSLFGSHKDDFEKRLQHISKEEAAVIARTVKRSHSWRRMSRHLIILSVLFEVIAVAYAVMTTRSLELNWKMRALRVLPMFLLPGLSFFTYSTLRSFTRMXEQRDQKTLERLRAERQAKIDELKEKTNFYITQQLIQRYDPDPASKAAAATVLASKLGADTGLKVYLGDESKFNAPAGTSNDVEILQYAGLRNRKQ--ARSGSAGSAVLDHREGEMLHDVQLEGSSMNQHQQMIVEHYNPTSVSAQDGGWLARIAALLVGEDPTQSYALICSNCHMHNGLARKEELPYITYYCPHCNALNGPKQLADGA---SSLLNMASTTIVADADLVKQD---SGSIAERDSTSSSPAAETTE 387
Match: A0A2G2ZPK7 ((uncharacterized protein At2g24330-like {ECO:0000313|RefSeq:XP_016569583.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 1.996e-170
Identity = 261/398 (65.58%), Postives = 308/398 (77.39%), Query Frame = 0
Query: 1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPVAAAVE 396
MA + K+ +VA+ AT +EEK K+KK+G SR+WN +FR DDFEKRLQHISKEEAA++AR+ +RS N R +T++LII SVL E+ AV YAIMTTRSL+L+WKMRALRV PMFLLP LS L+YSAI SFT+M +RKDQKTL++LRAER KI ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLG D+GLK+Y+GDD+K N TGKS+DVE VQS+GLRNRKQ +RSSS SAVM EM+Q+ EGSDM +H Q VVEH NPT +QDGGW+ARIAALLVGEDPTQSYALICGNCHMHNGLARKED+P+ITYYCPHC+ALNRPKQL+ S +P G + +V + + V T D+ AS S SPVA VE
Sbjct: 1 MAAEPTKEHVDVADTEPVTLATDNEEKIKKEKKKGFFSRMWNSIFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIILSVLFEVIAVGYAIMTTRSLELDWKMRALRVLPMFLLPGLSFLTYSAIGSFTKMCERKDQKTLKKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNDVEVVQSTGLRNRKQ--ARSSSPESAVMDHPGTEMLQNTQLEGSDMTQHQQTVVEHYNPTGSSSQDGGWLARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPFITYYCPHCHALNRPKQLDDR----VSGTGTPNLGSATALADVHLVKQVGGSTPDKIPASASGSPVATPVE 392
Match: A0A1U8GLG0 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})
HSP 1 Score: 489.189 bits (1258), Expect = 1.996e-170
Identity = 261/398 (65.58%), Postives = 308/398 (77.39%), Query Frame = 0
Query: 1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPVAAAVE 396
MA + K+ +VA+ AT +EEK K+KK+G SR+WN +FR DDFEKRLQHISKEEAA++AR+ +RS N R +T++LII SVL E+ AV YAIMTTRSL+L+WKMRALRV PMFLLP LS L+YSAI SFT+M +RKDQKTL++LRAER KI ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLG D+GLK+Y+GDD+K N TGKS+DVE VQS+GLRNRKQ +RSSS SAVM EM+Q+ EGSDM +H Q VVEH NPT +QDGGW+ARIAALLVGEDPTQSYALICGNCHMHNGLARKED+P+ITYYCPHC+ALNRPKQL+ S +P G + +V + + V T D+ AS S SPVA VE
Sbjct: 1 MAAEPTKEHVDVADTEPVTLATDNEEKIKKEKKKGFFSRMWNSIFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIILSVLFEVIAVGYAIMTTRSLELDWKMRALRVLPMFLLPGLSFLTYSAIGSFTKMCERKDQKTLKKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNDVEVVQSTGLRNRKQ--ARSSSPESAVMDHPGTEMLQNTQLEGSDMTQHQQTVVEHYNPTGSSSQDGGWLARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPFITYYCPHCHALNRPKQLDDR----VSGTGTPNLGSATALADVHLVKQVGGSTPDKIPASASGSPVATPVE 392
Match: A0A2R6QL55 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})
HSP 1 Score: 489.574 bits (1259), Expect = 2.177e-170
Identity = 272/415 (65.54%), Postives = 320/415 (77.11%), Query Frame = 0
Query: 14 EIAGDLSATASEEKT--MKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDS-KLN-PSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVM--QQLEGEMMQHAATEGSD----MARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLE-GSSPPGSS--LVSS-PISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPV-AAAVENREATETRVCEGEVS 411
E + D AT ++E +KKK+RG++SRIWN +FRLHGDDFEKRLQHISKEEA+++AR+K+RS + R + ++LIIFSV+ E+ AV YAIMTTRSL+LNWKMRA RV PMFLLP LSS++YSA VSFTRM DRKDQKTLERLRAER EKI+ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLGADSGLK+Y+GD+S KLN PSTGKS+DVE VQSSGLRNRKQ +S S + + M Q E H + GS+ + H+Q+VV+H NP S A DGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKED+PYITYYCPHCNALNR E G S +S +VSS +G + P + SV +DR + SS+PV AAAVE EATE V ++S
Sbjct: 4 ESSKDAPATDNKESVTIVKKKQRGLISRIWNGLFRLHGDDFEKRLQHISKEEASVLARMKKRSQSWRRMIRHLIIFSVIFEVIAVGYAIMTTRSLELNWKMRAFRVLPMFLLPGLSSITYSAFVSFTRMCDRKDQKTLERLRAERQEKIDELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYVGDESTKLNAPSTGKSNDVELVQSSGLRNRKQLHPKSCSPTESTMLLQHSAEEEALHNTSPGSEGPETSSMHNQLVVDHYNPGSA-AHDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPYITYYCPHCNALNRSNHAEDGVSDSSNSPNMVSSVTTAGNINPTNAGSVTM------TDRMIPASSSNPVAAAAVETMEATERIVASADLS 411
| Match Name | Stats | Description |
|---|---|---|
| B9SPU2 | E-Value: 4.833e-180, PID: 66.67 | zinc_ribbon_10 domain-containing protein {ECO:0000... [more] |
| A0A4S4DJA8 | E-Value: 9.875e-177, PID: 65.21 | zinc_ribbon_10 domain-containing protein {ECO:0000... [more] |
| A0A7J7GVM6 | E-Value: 1.151e-176, PID: 65.21 | zinc_ribbon_10 domain-containing protein {ECO:0000... [more] |
| A0A6N2BQM9 | E-Value: 9.648e-176, PID: 67.66 | zinc_ribbon_10 domain-containing protein {ECO:0000... [more] |
| A0A3Q7G6Q7 | E-Value: 1.709e-174, PID: 67.41 | zinc_ribbon_10 domain-containing protein {ECO:0000... [more] |
| A0A2G3CMU7 | E-Value: 3.821e-172, PID: 66.33 | zinc_ribbon_10 domain-containing protein {ECO:0000... [more] |
| A0A0V0IL11 | E-Value: 1.463e-171, PID: 63.89 | (Putative ovule protein {ECO:0000313|EMBL:JAP33333... [more] |
| A0A2G2ZPK7 | E-Value: 1.996e-170, PID: 65.58 | (uncharacterized protein At2g24330-like {ECO:00003... [more] |
| A0A1U8GLG0 | E-Value: 1.996e-170, PID: 65.58 | zinc_ribbon_10 domain-containing protein {ECO:0000... [more] |
| A0A2R6QL55 | E-Value: 2.177e-170, PID: 65.54 | zinc_ribbon_10 domain-containing protein {ECO:0000... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |