Resource Type:
Polypeptide
Name:
DCAR_022829
Identifier:
DCAR_022829.mRNA-protein
Sequence:
MYNIINDNFEESVSQVLGAPKYRDTGALLYKREKENDSEQQDVAPSIGLL
RPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLL
SQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDV
SIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQ
CSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTID
LTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESME
SICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLA
LTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHK
LKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGS
SSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMAL
ASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGL
VNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQW
LLDDDNEIADEEMVDAADDVEA*
Sequence Length:
623
Sequence Checksum:
82fd95d5822fdab1f0f330278bd276f2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_022829, derives from mRNA, DCAR_022829. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R6Y8 ((F-box/LRR-repeat protein {ECO:0000313|EMBL:PSS21780.1}))
HSP 1 Score: 869.766 bits (2246), Expect = 0.000e+0
Identity = 432/561 (77.01%), Postives = 497/561 (88.59%), Query Frame = 0
Match: A0A2R6R6Y8 ((F-box/LRR-repeat protein {ECO:0000313|EMBL:PSS21780.1}))
HSP 1 Score: 869.766 bits (2246), Expect = 0.000e+0
Identity = 432/561 (77.01%), Postives = 497/561 (88.59%), Query Frame = 0
Query: 42 DVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWLL 602
D+APSI LLRPLLP NP+L+TL +DC RLDDS++D L+RPSLR + LHNC+DFSG LLS++G RCK LRSL+LSSVA+KR RS+ VSDLE+LL GCT+LETL LMFDVS FLR NFARVW LA AK+T LEIGYISS+MVTELLSP +GP Q P++++ SILP+IHKL L+VDYITDTM+GTIS++L SL++LDLRDAPIIEP+V DLTNSGLQ INP+GKLKHLSLIRSQEFV T FKRVNDLG+LLMADRC SMESICLGGFCRVTDTGFKTILHSC+ LYKF+V++G+QLTDLVF DI ATSL+LTH SLRWCNLLTN + +RLASN +LS LDLRDCRNLGD SL+AIGTL KL+TLLLDGSDIS +GLSYLK+ V+ S++SLS+RGCKRLTDKCIS LF+GSS+ L+ELDLSNLPNLSD +LLLA+SRV + ELRMRQCPLIGDTSVMALASMQ D RGSSL+LLDL+NCGGIT ++F+WLKKPYFPRLRWLGVTG VNR+LVDALARSRPFL V+ GEELGT QWDNS++MY HDYEEVDELEQWLL
Sbjct: 59 DIAPSIDLLRPLLP-RNPYLRTLKVDCKRLDDSAIDSLIRPSLRELCLHNCSDFSGRLLSEVGARCKGLRSLFLSSVAEKRGRSIHVSDLEELLNGCTELETLILMFDVSTFLRHNFARVWALACAKLTSLEIGYISSLMVTELLSPTVGPNQPPNNIKTSILPSIHKLCLSVDYITDTMVGTISRNLNSLSYLDLRDAPIIEPTVAFDLTNSGLQQINPNGKLKHLSLIRSQEFVTTCFKRVNDLGVLLMADRCSSMESICLGGFCRVTDTGFKTILHSCSKLYKFRVSHGTQLTDLVFLDISATSLSLTHASLRWCNLLTNHAIMRLASNMDLSSLDLRDCRNLGDESLRAIGTLPKLRTLLLDGSDISDLGLSYLKQRVISSLISLSIRGCKRLTDKCISSLFEGSSALILQELDLSNLPNLSDTGILLLARSRVPITELRMRQCPLIGDTSVMALASMQVHGDWCRGSSLRLLDLYNCGGITQLAFQWLKKPYFPRLRWLGVTGNVNRDLVDALARSRPFLHVACRGEELGTGQWDNSDEMYFHDYEEVDELEQWLL 618
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TUS1 ((F-box/LRR-repeat protein 10 {ECO:0000313|RefSeq:XP_011088656.1}))
HSP 1 Score: 858.21 bits (2216), Expect = 0.000e+0
Identity = 427/580 (73.62%), Postives = 496/580 (85.52%), Query Frame = 0
Match: A0A6I9TUS1 ((F-box/LRR-repeat protein 10 {ECO:0000313|RefSeq:XP_011088656.1}))
HSP 1 Score: 858.21 bits (2216), Expect = 0.000e+0
Identity = 427/580 (73.62%), Postives = 496/580 (85.52%), Query Frame = 0
Query: 42 DVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWLLDDDNEIADEEMVDAADDVE 621
D+APS+ LLRPLLPP+NP+L++L LDC RLDDSSLD LLRPSL+ + L NCADFSG LLS+LG CK LR LYLSSVA+KR RS+ V LE+LL+GC+ LETL LMFDVSIFLR NFARVW LAS+K+ LEIGYISSVMVTELLSP +GP QS +H + SILPNI KL L+VDYITDTM+ TISK L SLTHLDLRD+PI+EP + DLTN+GLQ IN HGKLKHL L+RSQE TYFKRVNDLGILLMAD+C +MESICLGGFC+VTDTG+KTILHSC+ LYK +V +G+ LTDLVFHDI ATSL+LTHVSLRWCNLLTNL+ RL SNR+L +LDLRDCRNLGD +L+AI TL KLKTLL+DG DIS VGLSYL + + +++ SLSVRGCKRLTD+CIS LFDG+S+RELRELDLSNLPNLSDA VLLLAKSR+ + ELR+RQCPLIGDTSVMALASMQ D++ RGSSL+LLDL+NCGGIT ++FRWLKKPYFPRLRWLGVTG VNR++VDAL RSRP L V+ GEELGT+QWDN +D Y DYEEVDELEQWLL ++ +++D+EM DA D E
Sbjct: 66 DIAPSMDLLRPLLPPDNPYLRSLKLDCTRLDDSSLDFLLRPSLQELCLRNCADFSGKLLSKLGHSCKDLRFLYLSSVAEKRGRSVDVLHLEELLSGCSHLETLILMFDVSIFLRHNFARVWSLASSKLISLEIGYISSVMVTELLSPAVGPHQSSNHPRPSILPNIQKLCLSVDYITDTMVSTISKCLTSLTHLDLRDSPIMEPRMAFDLTNNGLQQINAHGKLKHLCLVRSQEIAPTYFKRVNDLGILLMADKCSAMESICLGGFCQVTDTGYKTILHSCSKLYKLRVFHGTHLTDLVFHDIAATSLSLTHVSLRWCNLLTNLAVSRLTSNRDLCMLDLRDCRNLGDEALRAINTLPKLKTLLMDGCDISDVGLSYLSKGLTNTLASLSVRGCKRLTDRCISFLFDGNSNRELRELDLSNLPNLSDAGVLLLAKSRIAIAELRLRQCPLIGDTSVMALASMQVDENMCRGSSLRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDIVDALTRSRPHLHVATRGEELGTDQWDNLDDFYAQDYEEVDELEQWLLGEE-DMSDDEMEDALDMAE 644
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BCD0 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646} (Fragment))
HSP 1 Score: 843.573 bits (2178), Expect = 0.000e+0
Identity = 427/542 (78.78%), Postives = 484/542 (89.30%), Query Frame = 0
Match: A0A5B7BCD0 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646} (Fragment))
HSP 1 Score: 843.573 bits (2178), Expect = 0.000e+0
Identity = 427/542 (78.78%), Postives = 484/542 (89.30%), Query Frame = 0
Query: 62 QTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWLLD 603
++L +DC +LDDS++D LLRPSL + LHNCADFSG LLS++G RCK LRSLYLS+VA+ R RS+ VSDLE+LL+GCT+LETL LMFD SIFLR NFARVW LASAK+T LEIGYISSVMVTELLSP +GP Q +H++ SILP+I KL L+VDYITDTM+ TISK+L SLTHLDL+DAPIIEP+VT DLTNSGLQ INPHGKLKHLSL+RSQEFVATYFKRVNDLG LLMADRC SMESICLGGF RVTDTGFKT+LHSC+SLYK KV++G+QLTDLVFHDI ATSL+LTHVSLRWCNLLTN + +RLASN +LSVLDLRDCRNLGD +L AIGTL KLKTLLLDGSDIS VGLSYLK+ V+ S+VSLSVRGCKRLTDKCIS LFDGSS+ EL+ELDLSNLPNLSDA VLLLAK+RV ++ELRMRQCPLIGDTSVMALASMQ D D+WRGS+L+LLDL+NCGGIT ++FRWLKKPYFPRLRWLGVTG N +V LARSRPFL V+ GEELGT+QWDNS+D+YMHDYEEVDELEQWLL+
Sbjct: 114 RSLKVDCTQLDDSAIDYLLRPSLHELCLHNCADFSGKLLSEVGGRCKDLRSLYLSTVAETRGRSIHVSDLEELLSGCTELETLILMFDFSIFLRHNFARVWALASAKLTSLEIGYISSVMVTELLSPTVGPHQPSNHIRQSILPSIRKLCLSVDYITDTMVSTISKNLNSLTHLDLQDAPIIEPTVTFDLTNSGLQQINPHGKLKHLSLVRSQEFVATYFKRVNDLGFLLMADRCSSMESICLGGFSRVTDTGFKTVLHSCSSLYKLKVSHGTQLTDLVFHDISATSLSLTHVSLRWCNLLTNHAVMRLASNLDLSVLDLRDCRNLGDEALGAIGTLPKLKTLLLDGSDISDVGLSYLKQGVISSLVSLSVRGCKRLTDKCISFLFDGSSTLELQELDLSNLPNLSDAGVLLLAKNRVPIIELRMRQCPLIGDTSVMALASMQVDGDSWRGSTLRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSGNLYMVHVLARSRPFLHVACRGEELGTDQWDNSDDLYMHDYEEVDELEQWLLE 655
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4B4F1 ((F-box/LRR-repeat protein 10 {ECO:0000313|RefSeq:XP_015893283.1}))
HSP 1 Score: 840.491 bits (2170), Expect = 0.000e+0
Identity = 420/580 (72.41%), Postives = 495/580 (85.34%), Query Frame = 0
Match: A0A6P4B4F1 ((F-box/LRR-repeat protein 10 {ECO:0000313|RefSeq:XP_015893283.1}))
HSP 1 Score: 840.491 bits (2170), Expect = 0.000e+0
Identity = 420/580 (72.41%), Postives = 495/580 (85.34%), Query Frame = 0
Query: 42 DVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWLLDDDNEIADEEMVDAADDVE 621
++APS+ LLRPLLP NP+L++L +DC +LDDS+++ LLRPSLR + L NC+DFSG LLS++G C LRSL L SVA+KR R++ +SDLE+LL+GCTQLE L LMFDVS+FLR NFARVW LAS K+T LEIGYISSVMVTELLSP LG QSP+H+Q SILP+I KL L+VDYITD M+ TISK L+ L+HLDLRDAPIIEP VT DLTN+GLQLIN HGKLKHLSL+RSQEF+ TYF+RVNDLG+LLMAD+C +MESI LGGFCRVTDTGFKTILHSC+ LYK +V++G+QLTDLVFHDI ATSL+L HVSLRWCNL+TN + LASN++L VLDLR CRNLGD +L+AI L KLK LLLDGSDIS GL+YL+ V+ S+VSLSVRGCK+LTDK +S LFDGSS ELRELDLSNLPNLSD VLLLAKSR+ + ELRMRQCPLIGDTS+MALASMQ D+D W G+SL+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALARSRPFL V+ GEELG+ QWD+S+ ++ HDY+EVDELEQWLL+ + E DEEMVDA D+ E
Sbjct: 62 EIAPSVDLLRPLLP-ENPYLRSLKVDCGKLDDSAIEILLRPSLRELCLVNCSDFSGKLLSEIGSMCNNLRSLCLGSVAEKRGRAIHISDLEELLSGCTQLEALVLMFDVSLFLRHNFARVWALASKKLTSLEIGYISSVMVTELLSPNLGFNQSPNHIQSSILPSIQKLCLSVDYITDAMVSTISKGLMYLSHLDLRDAPIIEPRVTFDLTNAGLQLINQHGKLKHLSLVRSQEFLFTYFRRVNDLGLLLMADKCANMESIYLGGFCRVTDTGFKTILHSCSKLYKLRVSHGTQLTDLVFHDISATSLSLLHVSLRWCNLITNYAVANLASNKDLKVLDLRHCRNLGDDALRAIRNLPKLKILLLDGSDISDAGLAYLRPRVIRSLVSLSVRGCKKLTDKGLSALFDGSSITELRELDLSNLPNLSDNGVLLLAKSRIPIFELRMRQCPLIGDTSIMALASMQVDEDRWHGNSLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGCVNRDMVDALARSRPFLHVACHGEELGSEQWDSSDGLFTHDYDEVDELEQWLLEGEGESDDEEMVDAEDNAE 640
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4RN65 ((Uncharacterized protein {ECO:0000313|EMBL:ESR35758.1}))
HSP 1 Score: 839.721 bits (2168), Expect = 0.000e+0
Identity = 411/581 (70.74%), Postives = 494/581 (85.03%), Query Frame = 0
Match: V4RN65 ((Uncharacterized protein {ECO:0000313|EMBL:ESR35758.1}))
HSP 1 Score: 839.721 bits (2168), Expect = 0.000e+0
Identity = 411/581 (70.74%), Postives = 494/581 (85.03%), Query Frame = 0
Query: 42 DVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWLLDDDNEI-ADEEMVDAADDVE 621
D+A S +++PLLPPN P+L++L +DC +LDDS+++ +LRP+L + LHNCADFSG LLS++G +CK LRSLYL SVA+KR RS+ +SDLE+LL GC QLE L LMFD+S+FLR NFARVW LAS K+T LEIGYISSVMVTELLSP + P QSP+ ++ SILP I KL L+VDYITD M+GTIS+ LVSLTHLDLRDAP+IEP +T DLTNSGLQ IN HGKLKHLSLIRSQEF+ TYF+RVNDLGILLMAD+C SMESICLGGFCRVTDTGFKTILHSC++LYK +V++G+QLTDLVFHDI ATSL+LTHV LRWCNLLTN + LASN + VLDLRDC+NLGD +L+AI +L +LK LLLDGSDIS VG+SYL+ +V+ S+V LS+RGCKRLTDKCIS LFDG+S +L+ELDLSNLP+LSD +L LA RV + ELR+RQCPLIGDTSV+ALASM DDD W GSS++LLDL+NCGGIT ++FRWLKKPYFPRLRWLGVTG VNR+++DALARSRPFL V+ GEELG +QWDNS+ MYMHDY+EVDELEQWL++ ++E DEEM +A + E
Sbjct: 59 DIALSTEIIKPLLPPN-PYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAEINAE 638
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067FQ22 ((Uncharacterized protein {ECO:0000313|EMBL:KDO68205.1}))
HSP 1 Score: 839.721 bits (2168), Expect = 0.000e+0
Identity = 411/581 (70.74%), Postives = 494/581 (85.03%), Query Frame = 0
Match: A0A067FQ22 ((Uncharacterized protein {ECO:0000313|EMBL:KDO68205.1}))
HSP 1 Score: 839.721 bits (2168), Expect = 0.000e+0
Identity = 411/581 (70.74%), Postives = 494/581 (85.03%), Query Frame = 0
Query: 42 DVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWLLDDDNEI-ADEEMVDAADDVE 621
D+A S +++PLLPPN P+L++L +DC +LDDS+++ +LRP+L + LHNCADFSG LLS++G +CK LRSLYL SVA+KR RS+ +SDLE+LL GC QLE L LMFD+S+FLR NFARVW LAS K+T LEIGYISSVMVTELLSP + P QSP+ ++ SILP I KL L+VDYITD M+GTIS+ LVSLTHLDLRDAP+IEP +T DLTNSGLQ IN HGKLKHLSLIRSQEF+ TYF+RVNDLGILLMAD+C SMESICLGGFCRVTDTGFKTILHSC++LYK +V++G+QLTDLVFHDI ATSL+LTHV LRWCNLLTN + LASN + VLDLRDC+NLGD +L+AI +L +LK LLLDGSDIS VG+SYL+ +V+ S+V LS+RGCKRLTDKCIS LFDG+S +L+ELDLSNLP+LSD +L LA RV + ELR+RQCPLIGDTSV+ALASM DDD W GSS++LLDL+NCGGIT ++FRWLKKPYFPRLRWLGVTG VNR+++DALARSRPFL V+ GEELG +QWDNS+ MYMHDY+EVDELEQWL++ ++E DEEM +A + E
Sbjct: 59 DIALSTEIIKPLLPPN-PYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAEINAE 638
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2E5P7 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 836.254 bits (2159), Expect = 0.000e+0
Identity = 412/560 (73.57%), Postives = 480/560 (85.71%), Query Frame = 0
Match: A0A5D2E5P7 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 836.254 bits (2159), Expect = 0.000e+0
Identity = 412/560 (73.57%), Postives = 480/560 (85.71%), Query Frame = 0
Query: 42 DVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 601
D++PS+ L++PLLPPN+ HLQ+L LDC +L+DSS++ LLRPSL+ + HNCADFSG LLS++G RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LAS +T LEIGYISSVMVTELLSP +GP Q P+ ++ SILP I KL LAVDYITDTM+GTISK L LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF++TYFKRVNDLGILLMAD+C +MESICLGGFCRVTDTGFKTILHSC+SLYK KV +GSQLTDLVFHDI ATSL+LTHVS RWCNLLTN + L N L VLDLR C+NLGD +L AIG+L +LK L LD SDIS VG++YL+ ++ S+VSLSVRGCK+LTDKCIS+LFDGSS EL+ELDLSNLPNLSD VL LAKSRV + ELRMRQCPLIGDTS+MALASMQADDD GSSL+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W+N + YMHDYEE+DELEQWL
Sbjct: 57 DISPSMELIKPLLPPNS-HLQSLKLDCGQLNDSSIELLLRPSLQELCFHNCADFSGKLLSEIGSRCKDVRSLYLGSVAEKRGRAIHISDLEELLGGCTQLEELNLMFDLSLFLRHNFARVWALASKMLTSLEIGYISSVMVTELLSPNVGPHQYPNQIRPSILPAIQKLSLAVDYITDTMVGTISKGLTLLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLSTYFKRVNDLGILLMADKCANMESICLGGFCRVTDTGFKTILHSCSSLYKLKVCHGSQLTDLVFHDIAATSLSLTHVSFRWCNLLTNHAIKSLVRNTRLKVLDLRGCKNLGDEALPAIGSLCELKMLQLDNSDISDVGIAYLRHGIISSLVSLSVRGCKKLTDKCISVLFDGSSKLELQELDLSNLPNLSDNGVLALAKSRVPISELRMRQCPLIGDTSIMALASMQADDDRGHGSSLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNNIDSSYMHDYEELDELEQWL 615
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AG18 ((F-box/LRR-repeat protein 10 isoform X1 {ECO:0000313|RefSeq:XP_021285878.1}))
HSP 1 Score: 835.869 bits (2158), Expect = 0.000e+0
Identity = 409/560 (73.04%), Postives = 483/560 (86.25%), Query Frame = 0
Match: A0A6J1AG18 ((F-box/LRR-repeat protein 10 isoform X1 {ECO:0000313|RefSeq:XP_021285878.1}))
HSP 1 Score: 835.869 bits (2158), Expect = 0.000e+0
Identity = 409/560 (73.04%), Postives = 483/560 (86.25%), Query Frame = 0
Query: 42 DVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 601
D++PS+ L++PLLPPN P+L++L LDC +L+DSS++ LLRPSL+ + LHNCADFSG LLS++G+RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LA+ K++ LEIGYISSV VTELLSP +GP Q P+ ++ SILP I KL L+VDYITDTM+ TISK L+ LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF+ TYFKRVNDLGILLMAD+C MESICLGGFCRVTDTGFKTILHSC+SLYK KV++GSQLTDLVFHDI ATSL+LTHVSLRWCNLL+N + L N L VLDLRDC++LGD +L+AI +L KLK LLLDGSDI+ G++YL ++ S+VSLSVRGCK+LTDKCIS LFDGSS EL+ELDLSNLP LSD VL LAKSRV + ELRMRQCPLIGDTSVMALASMQ DDD GSSLQLLDL+NCGGITP+SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W++S+ +YMHDYEE+DELEQWL
Sbjct: 57 DISPSMELIKPLLPPN-PYLKSLKLDCGQLNDSSVELLLRPSLQELCLHNCADFSGKLLSEIGLRCKDVRSLYLGSVAEKRGRAVHISDLEELLRGCTQLEALNLMFDISLFLRHNFARVWGLATEKLSSLEIGYISSVTVTELLSPNVGPHQCPNQIRPSILPGIQKLSLSVDYITDTMVSTISKGLILLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLITYFKRVNDLGILLMADKCAKMESICLGGFCRVTDTGFKTILHSCSSLYKLKVSHGSQLTDLVFHDIAATSLSLTHVSLRWCNLLSNHAVRSLVCNLGLKVLDLRDCKSLGDEALRAISSLCKLKMLLLDGSDITDAGIAYLNRGIISSLVSLSVRGCKKLTDKCISALFDGSSKLELQELDLSNLPGLSDNGVLTLAKSRVPISELRMRQCPLIGDTSVMALASMQVDDDRGHGSSLQLLDLYNCGGITPLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNDSDGLYMHDYEEMDELEQWL 615
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0D2SUB2 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 835.099 bits (2156), Expect = 0.000e+0
Identity = 411/560 (73.39%), Postives = 481/560 (85.89%), Query Frame = 0
Match: A0A0D2SUB2 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 835.099 bits (2156), Expect = 0.000e+0
Identity = 411/560 (73.39%), Postives = 481/560 (85.89%), Query Frame = 0
Query: 42 DVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 601
D++PS+ L++ LLPPN+ HLQ+L LDC +L+DSS++ LLRPSL+ + HNCADFSG LLS++G RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LAS K+T LEIGYISSVMVTELLSP +GP Q P+ ++ SILP I KL LAVDYITDTM+GTISK L LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF++TYFKRVNDLGILLMAD+C +MESICLGGFCRVTDTGFKTILHSC+SLYK KV +GSQLTDLVFHDI ATSL+LTHVS RWCNLLTN + L N +L VLDLR C+NLGD +L AIG+L +LK L LD SDIS VG++YL+ ++ S+VSLSVRGCK+LTDKCIS+LFDGSS EL+ELDLSNLPNLSD VL LAKSRV + ELRMRQCPLIGDTS+MALASMQADDD GS+L+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W+N + YMHDYEE+DELEQWL
Sbjct: 57 DISPSMELIKSLLPPNS-HLQSLKLDCGQLNDSSIELLLRPSLQELCFHNCADFSGKLLSEIGSRCKDVRSLYLGSVAEKRGRAIHISDLEELLGGCTQLEELNLMFDLSLFLRHNFARVWALASKKLTSLEIGYISSVMVTELLSPNVGPHQYPNQIRPSILPAIQKLSLAVDYITDTMVGTISKGLALLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLSTYFKRVNDLGILLMADKCANMESICLGGFCRVTDTGFKTILHSCSSLYKLKVCHGSQLTDLVFHDIAATSLSLTHVSFRWCNLLTNHAIKSLVRNTHLKVLDLRGCKNLGDEALAAIGSLCELKMLQLDNSDISDVGIAYLQHGIISSLVSLSVRGCKKLTDKCISVLFDGSSKLELQELDLSNLPNLSDNGVLALAKSRVPISELRMRQCPLIGDTSIMALASMQADDDRGHGSNLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNNIDSSYMHDYEELDELEQWL 615
BLAST of DCAR_022829 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2S972 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 411/560 (73.39%), Postives = 480/560 (85.71%), Query Frame = 0
Match: A0A5D2S972 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 411/560 (73.39%), Postives = 480/560 (85.71%), Query Frame = 0
Query: 42 DVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 601
D++PS+ L++ LLPPN+ HLQ+L LDC +L+DSS+ LLRPSL+ + HNCADFSG LLS++G RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LAS K+T LEIGYISSVMVTELLSP +GP Q P+ ++ SILP I KL LAVDYITDTM+GTISK L LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF++TYFKRVNDLGILLMAD+C +MESICLGGFCRVTDTGFKTILHSC+SLYK KV +GSQLTDLVFHDI ATSL+LTHVS RWCNLLTN + L N +L VLDLR C+NLGD +L AIG+L +LK L LD SDIS VG++YL+ ++ S+VSLSVRGCK+LTDKCIS+LFDGSS EL+ELDLSNLPNLSD VL LAKSRV + ELRMRQCPLIGDTS+MALASMQADDD GS+L+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W+N + YMHDYEE+DELEQWL
Sbjct: 57 DISPSMELIKSLLPPNS-HLQSLKLDCGQLNDSSIQLLLRPSLQELCFHNCADFSGKLLSEIGSRCKDVRSLYLGSVAEKRGRAIHISDLEELLGGCTQLEELNLMFDLSLFLRHNFARVWALASKKLTSLEIGYISSVMVTELLSPNVGPHQYPNQIRPSILPAIQKLSLAVDYITDTMVGTISKGLALLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLSTYFKRVNDLGILLMADKCANMESICLGGFCRVTDTGFKTILHSCSSLYKLKVCHGSQLTDLVFHDIAATSLSLTHVSFRWCNLLTNHAIKSLVRNTHLKVLDLRGCKNLGDEALAAIGSLCELKMLQLDNSDISDVGIAYLQHGIISSLVSLSVRGCKKLTDKCISVLFDGSSKLELQELDLSNLPNLSDNGVLALAKSRVPISELRMRQCPLIGDTSIMALASMQADDDRGHGSNLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNNIDSSYMHDYEELDELEQWL 615
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6R6Y8 | E-Value: 0.000e+0, PID: 77.01 | (F-box/LRR-repeat protein {ECO:0000313|EMBL:PSS217... [more] |
| A0A6I9TUS1 | E-Value: 0.000e+0, PID: 73.62 | (F-box/LRR-repeat protein 10 {ECO:0000313|RefSeq:X... [more] |
| A0A5B7BCD0 | E-Value: 0.000e+0, PID: 78.78 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A6P4B4F1 | E-Value: 0.000e+0, PID: 72.41 | (F-box/LRR-repeat protein 10 {ECO:0000313|RefSeq:X... [more] |
| V4RN65 | E-Value: 0.000e+0, PID: 70.74 | (Uncharacterized protein {ECO:0000313|EMBL:ESR3575... [more] |
| A0A067FQ22 | E-Value: 0.000e+0, PID: 70.74 | (Uncharacterized protein {ECO:0000313|EMBL:KDO6820... [more] |
| A0A5D2E5P7 | E-Value: 0.000e+0, PID: 73.57 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A6J1AG18 | E-Value: 0.000e+0, PID: 73.04 | (F-box/LRR-repeat protein 10 isoform X1 {ECO:00003... [more] |
| A0A0D2SUB2 | E-Value: 0.000e+0, PID: 73.39 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5D2S972 | E-Value: 0.000e+0, PID: 73.39 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |