MFGGQFDGSAAFAGGGFMPSQATQSNRESQQLLPLTVKQISLALLSSDEK
SNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESA
DMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVEC
AYVHHYNTKLRVLGGGPVAGHMPTPAASMPFQGHQATPSNQFPGVQYSSG
DFGGVDKMVLEFLQQPSCVTLFAHYALSNFTYAQKLFTQIHKPTIFDYNN
MIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIY
GQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLI
SGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCEL
RECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTA
LIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFR
EMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHY
GCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLN
AGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGW
SSIEIDGITNRFTVDDKSHSHAKDIYQLLSLLTRDLVSSNLESVDPD*
| Relationships |
|---|
| The polypeptide, DCAR_020125, derives from mRNA, DCAR_020125. |

Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A4S4DHI1 ((Uncharacterized protein {ECO:0000313|EMBL:THG01834.1}))
HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0
Identity = 291/458 (63.54%), Postives = 361/458 (78.82%), Query Frame = 0
Query: 228 SNFTYAQKLFTQIHKPTIFDYNNMIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGWSSIEIDGITNRFTVDDKSHSHAKDIYQLLSLLTRD 685
+N YA+ +F QI PTIFD+N+MIMG+SK+S+ + G+ VYAQMR G PN TFP+L KAC ++SL Q++GQ +KFG DVYV+SS IHMY+ G A +VF+ S +RNVVC+TSLISG+C NG V+ AREVFD M ERND+ SAMVSGY+ NE+++E I LF +L+ C NVR N+S+L+ VL+ACAAVG +EEG VH Y+ EN+ E EL+LGTALIDFYAKCGN++ A IFKK+ +DVTTW++MILGLA+NG N+M L LF EMER GPKPNA+TF+ +L+ACN T + +WRLFGRM KVYGI+P+IEHYGCMVDLLARAGQI++AEI+IKSMPMEPDG IWGS LNGCL+HG+ ELG AGK +I+LEP+HSGRYVLLANMYA +G+WE V RLRKMMK K+V P WS IEIDGI +RF VDDKSHS + DI ++ RD
Sbjct: 37 NNMNYAEPVFNQIVIPTIFDFNSMIMGYSKSSDPKKGLQVYAQMRCQGFEPNDHTFPVLTKACSCIYSLYQVHGQIMKFGYGCDVYVISSIIHMYSKFGATNFACQVFEESSNRNVVCWTSLISGYCSNGLVNEAREVFDSMPERNDISFSAMVSGYVWNERFNEAIELFRKLKSCANVRPNRSLLVGVLNACAAVGAFEEGKWVHAYINENFSELELQLGTALIDFYAKCGNIKDAENIFKKIPYKDVTTWSAMILGLAINGNNEMGLQLFAEMERRGPKPNAITFVAVLTACNCLTIVNKSWRLFGRMSKVYGISPVIEHYGCMVDLLARAGQIREAEIMIKSMPMEPDGAIWGSLLNGCLMHGHVELGKKAGKLLIQLEPRHSGRYVLLANMYAAMGSWEGVVRLRKMMKDKKVDILPAWSFIEIDGIVHRFVVDDKSHSQSSDICSNDFMIFRD 494
Match: A0A7J7G9T9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5937523.1}))
HSP 1 Score: 612.838 bits (1579), Expect = 0.000e+0
Identity = 290/457 (63.46%), Postives = 359/457 (78.56%), Query Frame = 0
Query: 228 SNFTYAQKLFTQIHKPTIFDYNNMIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGWSSIEIDGITNRFTVDDKSHSHAKDIYQLLSLLTR 684
+N YA+++ QI PTIFD+N+MIMG+SK+S+ + G+ VYAQMR G PN TFP+L KAC ++SL Q++GQ +KFG DVYV+SS IHMY+ G A +VF+ S +RNVVC+TSLISG+C N VD AREVFD M ERND+ SAMVSGY+ NE+++E I LF +L+ C NVR N+S+L+ VL+ACAAV +EEG VH Y+ EN+ E EL+LGTALIDFYAKCGNV+ A IF K+ +DVTTW++MILGLA+NG N+M L LF EMER GPKPNA+TF+ +L+ACN T + +WRLFGRM KVYGI+P+IEHYGCMVDLLARAGQI++AEI+IKSMPMEPDG IWGS LNGCL+HG+ ELG AGK +I+LEP+HSGRYVLLANMYA G+WE V RLRKMMK K+V + P WS IEIDGI +RF VDDKSHS + DI LL+ + R
Sbjct: 62 NNMNYAERVLNQIVIPTIFDFNSMIMGYSKSSDPKKGLQVYAQMRCQGFEPNDHTFPVLTKACSCIYSLYQVHGQIMKFGYGCDVYVISSIIHMYSKFGATNFACQVFEESSNRNVVCWTSLISGYCSNELVDEAREVFDSMPERNDISFSAMVSGYVWNERFNEVIELFRKLKSCANVRPNRSLLVGVLNACAAVAAFEEGKWVHAYINENFSELELQLGTALIDFYAKCGNVKDAENIFNKIPYKDVTTWSAMILGLAINGNNEMGLQLFAEMERRGPKPNAITFVAVLTACNCLTMVNKSWRLFGRMSKVYGISPVIEHYGCMVDLLARAGQIREAEIMIKSMPMEPDGAIWGSLLNGCLMHGHVELGKKAGKLLIQLEPRHSGRYVLLANMYAATGSWEGVVRLRKMMKDKKVDTLPAWSFIEIDGIVHRFVVDDKSHSQSSDICSLLNHVIR 518
Match: A0A7J0DKR2 ((Similar to SLOW GROWTH 1 {ECO:0000313|EMBL:GFS36394.1}))
HSP 1 Score: 610.527 bits (1573), Expect = 0.000e+0
Identity = 288/465 (61.94%), Postives = 363/465 (78.06%), Query Frame = 0
Query: 221 LFAHYALS---NFTYAQKLFTQIHKPTIFDYNNMIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGWSSIEIDGITNRFTVDDKSHSHAKDIYQLLSLL 682
+ A ALS + YA+ +FTQI PT FD+N+MI+G+SK S +MG+++YAQMR G PN RTF L AC ++SL Q++GQ +K G DVYV+SS I Y G + +A +VFD S RNVVC+TSLISG+C NG+VD AR+VFD M ERNDV SAMVSGY+ NE ++E I LF +L+ C NV N+S+L+S+L+ACA+VG +EEG VH Y+ EN+ ++ELELGTALI+FYAKCG+++ A IF K+ C+DV TW++MILGLA+NG N++ L LF EMER GPKPNA+TF+G+L+ACN KT + + WRLFGRM KV+ I+PLIEHYGCMVDLLARAGQ ++AE+LIKSMPMEPDG IWGS LNGCL+HGN ELG AGK +I+LEPQHSGRYVLLANMYA +G+WE V RLRKMMK ++V + P WS IEIDGI +RF VDDKSHS ++DIY LL+ L
Sbjct: 26 ILAFCALSESGDMNYAESVFTQISIPTTFDFNSMIVGYSKNSKPKMGLAIYAQMRCEGFEPNERTFAALIGACSCINSLSQVHGQIMKLGHGCDVYVISSIISKYTNFGAMKVACQVFDESPSRNVVCWTSLISGYCSNGFVDEARQVFDSMPERNDVSFSAMVSGYVWNEYFNEAIDLFRKLKSCANVMPNRSLLVSILNACASVGAFEEGKWVHSYINENFSDHELELGTALINFYAKCGHIKAAENIFCKIPCKDVATWSAMILGLAINGNNELGLQLFAEMERRGPKPNAITFVGVLAACNHKTLVCETWRLFGRMTKVFNISPLIEHYGCMVDLLARAGQTREAEVLIKSMPMEPDGAIWGSLLNGCLLHGNVELGERAGKLLIQLEPQHSGRYVLLANMYAAMGSWEGVVRLRKMMKERKVDTFPAWSFIEIDGIVHRFLVDDKSHSQSRDIYSLLNQL 490
Match: A0A2R6P418 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSR85030.1}))
HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0
Identity = 288/465 (61.94%), Postives = 363/465 (78.06%), Query Frame = 0
Query: 221 LFAHYALS---NFTYAQKLFTQIHKPTIFDYNNMIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGWSSIEIDGITNRFTVDDKSHSHAKDIYQLLSLL 682
+ A ALS + YAQ +FTQI PT FD+N+MI+G+SK S +MG+++YAQMR G PN RTF L AC ++SL Q++GQ +K G DVYV+SS I Y G + +A +VFD S RNVVC+TSLISG+C NG+VD AR+VFD M ERNDV SAMVSGY+ NE ++E I LF +L+ C NV N+S+L+S+L+ACA+VG +EEG VH Y+ E++ ++ELELGTALI+FYAKCG+++ A IF K+ C+DV TW++MILGLA+NG N++ L LF EMER GPKPNA+TF+G+L+ACN KT + + WRLFGRM KV+ I+PLIEHYGCMVDLLARAGQ ++AE+LIKSMPMEPDG IWGS LNGCL+HGN ELG AGK +I+LEPQHSGRYVLLANMYA +G+WE V RLRKMMK ++V + P WS IEIDGI +RF VDDKSHS ++DIY LL+ L
Sbjct: 26 ILAFCALSESGDMNYAQSVFTQISIPTTFDFNSMIVGYSKNSKPKMGLAIYAQMRCEGFEPNERTFAALIGACSCINSLSQVHGQIMKLGHGCDVYVISSIISKYTNFGAMTVACQVFDESPSRNVVCWTSLISGYCSNGFVDEARQVFDSMPERNDVSFSAMVSGYVWNEHFNEAIDLFRKLKSCANVMPNRSLLVSILNACASVGAFEEGKWVHSYINESFSDHELELGTALINFYAKCGHIKAAENIFCKIPCKDVATWSAMILGLAINGNNELGLQLFAEMERRGPKPNAITFVGVLAACNHKTLVCETWRLFGRMTKVFNISPLIEHYGCMVDLLARAGQTREAEVLIKSMPMEPDGAIWGSLLNGCLLHGNVELGERAGKLLIQLEPQHSGRYVLLANMYAAMGSWEGVVRLRKMMKERKVDTFPAWSFIEIDGIVHRFLVDDKSHSQSRDIYSLLNQL 490
Match: A0A834HEZ3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7152794.1}))
HSP 1 Score: 590.882 bits (1522), Expect = 0.000e+0
Identity = 282/470 (60.00%), Postives = 353/470 (75.11%), Query Frame = 0
Query: 221 LFAHYALS---NFTYAQKLFTQIHKPTIFDYNNMIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGWSSIEIDGITNRFTVDDKSHSHAKDIYQLLSLLTRDLV 687
+ A ALS + YA +F QI PT FD+N MIMG+S +S+ E G++VY+ MR G PN RTFP L +AC + L Q++GQ +K G DVYV+SS IH+ + G +A +VF S RNVVC+TSL+SG+C NG V+ AREVFD M +RNDV CSAMVSGY+ NE ++E I LF EL+ G VR N+S+L+ VLSACAAVG EEG VH Y+ E++ E+E ELGTALIDFYAKCG V+ A IF+ M C+DV TW++MI+GLA+NG N+ L LF EME+ GPKPNA+TF+G+LSACN +T +AWRLFG M K+YGI+P+IEHYGCMVDLLARAG+IK+AEILIKSM MEPDG IWGS LNGCLIHG+ ELG AGK +I+LEPQHSGRY+LLANMYA +G WE V RLR +MK ++V + WS +EIDG ++F VDDKSHS + DIY+LL+ L +LV
Sbjct: 26 ILAFCALSQTGDLNYAHTVFNQILLPTTFDFNAMIMGYSDSSDPEKGLAVYSSMRRKGFEPNERTFPALTRACSCAYELYQVHGQIMKLGYYSDVYVISSLIHVSSKFGATNVACQVFGESSSRNVVCWTSLVSGYCSNGLVEKAREVFDSMPQRNDVSCSAMVSGYVRNEDFNEAIKLFRELKSWGYVRPNRSLLVCVLSACAAVGAVEEGKWVHSYINEHFSEHEAELGTALIDFYAKCGQVKAAENIFRTMPCKDVATWSAMIMGLAINGDNEWGLQLFAEMEQRGPKPNAITFVGVLSACNHRTLANEAWRLFGCMGKIYGISPVIEHYGCMVDLLARAGRIKEAEILIKSMSMEPDGAIWGSLLNGCLIHGHVELGERAGKLLIQLEPQHSGRYILLANMYAAMGIWEVVLRLRNIMKERKVDTVAAWSFVEIDGGVHKFVVDDKSHSQSSDIYRLLNQLNNELV 495
Match: A0A2P5E1Z1 ((Pentatricopeptide repeat {ECO:0000313|EMBL:PON79551.1}))
HSP 1 Score: 589.726 bits (1519), Expect = 0.000e+0
Identity = 283/476 (59.45%), Postives = 357/476 (75.00%), Query Frame = 0
Query: 221 LFAHYALSNFT---YAQKLFTQIHKPTIFDYNNMIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGWSSIEIDGITNRFTVDDKSHSHAKDIYQLLSLLTRDLVSSNLES 693
L A ALS++ YAQ LF QI P++FD N+ IMG S+TS E G+SVYA+MRS G+ PNARTF L KAC + LGQ++GQ V+FG D+YV SS + Y+ G + LA RVFD +D+NVVC+TSL+SG+C NG V AR++FD M ERNDV CSAMVSGY N + E I LF EL+ C NV S+L+SVL+ACA+VG EEG VH ++ +N EYELELGTAL+DFYAKCG +E A IF +M +DVT W++MI+G A NG+N + L+LF +MER GPKPNAVTFIG+LSACN T + AW FGRM KVYGI+P+IEHYGCM+DLLAR+G++K+AEILI+ MPMEPDG IWGS LNGCL+HG+ ELG GK +I+LEP+HSGRYVLL+NMYAT+G+WE V RLRKMMK + VV+ WS IEI G+ ++F DDKSHS + +IY++L L R+L SS++ S
Sbjct: 26 LLAFSALSDYASMAYAQALFDQITTPSVFDCNSTIMGFSRTSKSEKGLSVYAKMRSFGVEPNARTFTALVKACAVLRPLGQVHGQIVRFGHGSDIYVTSSVVSGYSRCGAMELARRVFDERIDKNVVCWTSLLSGYCGNGLVGEARKMFDEMPERNDVSCSAMVSGYARNGCFYEAIELFRELKTCSNVSLKGSLLVSVLNACASVGAVEEGKWVHLFLDKNGYEYELELGTALVDFYAKCGFIEDAQEIFSRMPDKDVTAWSAMIVGFAANGENKLGLELFTQMERKGPKPNAVTFIGVLSACNHGTLVNKAWLFFGRMTKVYGISPVIEHYGCMIDLLARSGKVKEAEILIRHMPMEPDGAIWGSLLNGCLMHGHVELGEMVGKFLIQLEPRHSGRYVLLSNMYATIGSWEEVMRLRKMMKQRNVVTISAWSFIEISGVLHKFVADDKSHSQSSNIYKVLVQLKRELESSSITS 501
Match: M5Y0G5 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ27718.1}))
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 286/469 (60.98%), Postives = 351/469 (74.84%), Query Frame = 0
Query: 221 LFAHYALS---NFTYAQKLFTQIHKPTIFDYNNMIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGWSSIEIDGITNRFTVDDKSHSHAKDIYQLLSLLTRDL 686
L A ALS N YA+ L QI +P IFD N+MIMG K S E G+S+Y +MR +G PNARTF L KAC V LGQ++GQ +KFG DVYV+SS I MY V A RVF+ SLD+N+ C+TSLISG+C NG V AR++FD M ERN+V SAMVSGY+ N ++E I LF E + +VR +S+L+SVL+ACA+VG +EEG ++ ++ EN EY LELGTALIDFYAKCG +E A +F M +DVTTW++MI+G A+NG+NDM L LF EME+ GPKPNAVTF+G+L+ACN KT + +AWRL GRM KVYGIAP IEHYGCMVDLLARAGQ+K AEILI+SM M+PDG IWGS LNGCLIHG+ ELG GK +IELEPQHSGRYVLLANMYA +GNWE TR+RKMMK ++VV+ WS IEIDG+ ++F DDKSHSH++ IY+ L+ L RDL
Sbjct: 50 LLAFSALSEYGNLHYAETLLYQITRPNIFDCNSMIMGFLKRSESEKGLSIYTKMRRMGTEPNARTFTFLVKACVGVSLLGQLHGQIMKFGHGCDVYVISSLISMYCKCEAVEFARRVFEESLDKNLACWTSLISGYCSNGLVHEARDLFDAMPERNNVSYSAMVSGYVWNACFNEAIDLFRESKS--HVRLKESLLVSVLNACASVGAFEEGKWINLFLNENGIEYGLELGTALIDFYAKCGCIEDAQEVFSMMPSKDVTTWSAMIMGFAINGENDMGLALFAEMEKKGPKPNAVTFVGVLTACNHKTLVNEAWRLLGRMSKVYGIAPGIEHYGCMVDLLARAGQVKDAEILIRSMAMKPDGGIWGSLLNGCLIHGHAELGDRVGKLLIELEPQHSGRYVLLANMYAEMGNWEDATRIRKMMKDREVVTSSAWSFIEIDGVVHKFVADDKSHSHSRKIYKTLNQLRRDL 516
Match: A0A5J5B171 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8535602.1}))
HSP 1 Score: 582.022 bits (1499), Expect = 0.000e+0
Identity = 274/432 (63.43%), Postives = 344/432 (79.63%), Query Frame = 0
Query: 229 NFTYAQKLFTQIHKPTIFDYNNMIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGWSSIEIDGITN 660
+ YA+ +F QI P+IFD+N+MI G+SK+S EMG+SV+AQMRS + PNARTFP+LAKAC V SL Q++GQ +KFG DVYV+SS I MY+ + +A +VF+ S ++NVVC+TSLISGFC N VD AREVF+ M ERNDV SAMVSGY+ NE ++E I LF EL+ V+ N+S+L+SVL+ACAAVG ++EG VH Y+ EN ++E+E+GTALIDFYAKCG++E A+ IF KMS +DVT W++MILGL +NG ND L+LF EMER GP+PNAVTF+G+L+ACN KT + +AWRLFGRM KVYGI P+IEHYGCMV LLARAG++K+AE+LI SMPMEPDG IWGS LNGCL+HG ELG AGK +I+LEPQHSGRYVLLANMYAT+G+WE V +LRKMMK ++VV+ P WS EIDGI +
Sbjct: 60 DMKYAETVFNQIVMPSIFDFNSMITGYSKSSRPEMGLSVFAQMRSDSVEPNARTFPILAKACVRVSSLYQVHGQIMKFGHGSDVYVISSLIFMYSKFEAMQVACQVFEESPNKNVVCWTSLISGFCTNELVDEAREVFNVMPERNDVSYSAMVSGYVWNEYFNEAIELFRELKSFAVVKPNQSLLVSVLNACAAVGAFQEGKWVHSYIDENCFDHEIEIGTALIDFYAKCGSIETALQIFSKMSQKDVTAWSAMILGLVINGNNDKGLELFLEMERSGPRPNAVTFVGVLAACNHKTQVNEAWRLFGRMSKVYGILPVIEHYGCMVGLLARAGRVKEAEMLINSMPMEPDGAIWGSLLNGCLLHGYVELGEKAGKLLIQLEPQHSGRYVLLANMYATMGSWEGVMKLRKMMKERKVVTIPAWSFTEIDGIVH 491
HSP 2 Score: 70.0922 bits (170), Expect = 7.800e-10
Identity = 73/338 (21.60%), Postives = 142/338 (42.01%), Query Frame = 0
Query: 288 KACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYAL--IGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGM----TERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIG-PKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHY----GCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSG 614
+AC ++ L Q++ + GL Y+ S + A+ G++ A VF+ + ++ + S+I+G+ ++ + VF M E N + + + G ++F + V+S+ + + E ++V C V E + T+LI + V+ A +F M R+ ++++M+ G N + A++LFRE++ KPN + +L+AC + G+ Y +H ++D A+ G I+ A + M + D W + + G +I+GN + GL + LE + SG
Sbjct: 19 QACSTMNELQQVHAHVITLGLARFTYITSKLLAFCAVSETGDMKYAETVFNQIVMPSIFDFNSMITGYSKSSRPEMGLSVFAQMRSDSVEPNARTFPILAKACVRVSSLYQVHGQI--------MKFGHGSDVYVISSLIFMYSKFEAMQVACQVFEESPNKNVVCWTSLISGFCTNELVDEAREVFNVMPERNDVSYSAMVSGYVWNEYFNEAIELFRELKSFAVVKPNQSLLVSVLNACAAVGAFQE-----GKWVHSYIDENCFDHEIEIGTALIDFYAKCGSIETALQIFSKMS-QKDVTAWSAMILGLVINGNNDKGLE-----LFLEMERSG 337
Match: A0A5E4FIV9 ((Full=PREDICTED: pentatricopeptide repeat-containing {ECO:0000313|EMBL:VVA28043.1}))
HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0
Identity = 285/469 (60.77%), Postives = 349/469 (74.41%), Query Frame = 0
Query: 221 LFAHYALS---NFTYAQKLFTQIHKPTIFDYNNMIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGWSSIEIDGITNRFTVDDKSHSHAKDIYQLLSLLTRDL 686
L A ALS N YA+ L QI +P IFD N+MIMG K S E G+S+Y +MR +G PNARTF L KAC V LGQ++GQ +KFG DVYV+SS I MY V A RVF+ SLD+N+ C+TSLISG+C NG V AR++FD M ERNDV SAMVSGY+ N ++E I LF E + +VR +S+L+SVL+ACA+VG +EEG ++ ++ EN EY LELGTALIDFYAKCG +E A +F M +DVTTW++MI+G A+NG+NDM L LF EME+ GPKPNAVTF+G+L+ACN KT + +AWRL GRM KVYGIAP IEHYGCMVDLLARAG +K AEILI SM M+PDG IWGS LNGCLIHG+ ELG GK +IELEPQHSGRYVLLANMYA +GNWE TR+RKMMK ++VV+ WS IEIDG+ ++F DDKSHSH++ I++ L+ L RDL
Sbjct: 50 LLAFSALSEYGNLHYAETLLYQITRPNIFDCNSMIMGFLKRSESEKGLSIYTKMRRMGTEPNARTFTFLVKACVGVSLLGQLHGQIMKFGHGCDVYVISSLISMYCKCEAVEFARRVFEESLDKNLACWTSLISGYCSNGLVHEARDLFDAMPERNDVSYSAMVSGYVWNACFNEAIDLFRESKS--HVRLKESLLVSVLNACASVGAFEEGKWINLFLNENGIEYGLELGTALIDFYAKCGCIEDAQEVFSMMPSKDVTTWSAMIMGFAINGENDMGLALFAEMEKKGPKPNAVTFVGVLTACNHKTLVNEAWRLLGRMSKVYGIAPGIEHYGCMVDLLARAGHVKDAEILIGSMAMKPDGGIWGSLLNGCLIHGHAELGYRVGKLLIELEPQHSGRYVLLANMYAEMGNWEDATRVRKMMKDREVVTSSAWSFIEIDGVVHKFVADDKSHSHSRKIHKTLNQLRRDL 516
Match: A0A803Q9M8 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:cds.evm.model.08.174}))
HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0
Identity = 273/460 (59.35%), Postives = 347/460 (75.43%), Query Frame = 0
Query: 232 YAQKLFTQIHKPTIFDYNNMIMGHSKTSNLEMGVSVYAQMRSLGISPNARTFPLLAKACENVHSLGQIYGQAVKFGLCGDVYVVSSFIHMYALIGEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHCYVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLFGRMCKVYGIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRYVLLANMYATLGNWESVTRLRKMMKVKQVVSKPGWSSIEIDGITNRFTVDDKSHSHAKDIYQLLSLLTRDLVSSNL 691
YAQKLF QI P +FD+N+M+MG SK SN E G+S+Y +MR +G+ PN+RTF +L KAC V LGQ++GQ V+FG C D YV SS I Y+ G + LA RVFD S+D+NVVC+TSL+SG+C NG + AR+VFD M RNDV SAMVSGY+ N + E I LF EL+ C NV S+L+SVL+AC +VG ++EG VH ++ + EYELEL TALIDFYAKCG + A +F KM +DVT WT+MI+GLA+NG+N + L+LFREME GPKPNAVTFIG+L+ACN +T + AW GRM KVY I+P IEHYGCMVDLLAR+G++K+AE+LIK MPM+PDG IWGS L GCL+HG ELG GK +IELEP+HSGRYV+LANMYAT+G+WE V R+RKMMK + VV+ GWS IEI G+ ++F DDKSHS +++IY +L L R+L SS++
Sbjct: 43 YAQKLFDQITTPNVFDFNSMLMGFSKISNFEKGLSLYTKMRRIGVDPNSRTFTVLVKACFVVSLLGQLHGQIVRFGHCSDAYVTSSVISTYSKFGSMELARRVFDQSVDKNVVCWTSLLSGYCNNGLISEARQVFDEMPMRNDVSYSAMVSGYVRNNCFYEAIELFRELKTCSNVNLKGSLLVSVLNACGSVGAFQEGKWVHLFIDKIGIEYELELSTALIDFYAKCGFIRDAQEVFDKMGYKDVTAWTAMIVGLAVNGENYLGLELFREMEEKGPKPNAVTFIGVLTACNHETLVDKAWLFLGRMFKVYRISPEIEHYGCMVDLLARSGRVKEAEMLIKHMPMKPDGAIWGSMLKGCLVHGYVELGEMVGKVLIELEPKHSGRYVVLANMYATIGSWEEVIRVRKMMKERDVVTISGWSFIEISGVVHKFIADDKSHSQSRNIYCVLDQLKRELKSSSI 502
HSP 2 Score: 58.5362 bits (140), Expect = 2.874e-6
Identity = 87/400 (21.75%), Postives = 159/400 (39.75%), Query Frame = 0
Query: 296 LGQIYGQAVKFGLCGDVYVVSSFIHMYALI-----GEVGLAVRVFDGSLDRNVVCYTSLISGFCRNGYVDCAREVFDGMTERNDVCCSAMVSGYISNEKYSEGIGLFCELRECGNVRFNKSILMSVLSACAAVGTYEEGVRVHC-YVRENYCEYELELGTALIDFYAKCGNVEVAVAIFKKMSCRDVTTWTSMILGLALNGKNDMALDLFREMERIGPKPNAVTFIGILSACNQKTPLTDAWRLF-------------------------------GRMCKVY----GIAPLIEHYGCMVDLLARAGQIKKAEILIKSMPMEPDGVIWGSFLNGCLIHGNTELGLNAGKHVIELEPQHSGRY---VLLANMYATLGN--WESVTRLRKMMKVKQVVSKPG 649
L QI+ + GL Y+ S + A + G +G A ++FD NV + S++ GF + ISN + +G+ L+ ++R G V N ++ AC V + +H VR +C + + +++I Y+K G++E+A +F + ++V WTS++ G NG A +F EM P N V++ ++S + +A LF G+ ++ GI +E ++D A+ G I+ A+ + M + D W + + G ++G LGL + + E P+ + VL A + TL + W + R+ K+ ++ + G
Sbjct: 4 LNQIHAHTITQGLSRFTYIASKLLAFSASLSSSNSGHLGYAQKLFDQITTPNVFDFNSMLMGFSK-----------------------------ISN--FEKGLSLYTKMRRIG-VDPNSRTFTVLVKACFVVSLLGQ---LHGQIVRFGHCS-DAYVTSSVISTYSKFGSMELARRVFDQSVDKNVVCWTSLLSGYCNNGLISEARQVFDEM----PMRNDVSYSAMVSGYVRNNCFYEAIELFRELKTCSNVNLKGSLLVSVLNACGSVGAFQEGKWVHLFIDKIGIEYELELSTALIDFYAKCGFIRDAQEVFDKMGYK-DVTAWTAMIVGLAVNGENYLGLELFREMEEKGPKPNAVTFIGVLTACNHETLVDKAWLFLGRMFKVYRISPEIEHYG 362
| Match Name | Stats | Description |
|---|---|---|
| A0A4S4DHI1 | E-Value: 0.000e+0, PID: 63.54 | (Uncharacterized protein {ECO:0000313|EMBL:THG0183... [more] |
| A0A7J7G9T9 | E-Value: 0.000e+0, PID: 63.46 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5937... [more] |
| A0A7J0DKR2 | E-Value: 0.000e+0, PID: 61.94 | (Similar to SLOW GROWTH 1 {ECO:0000313|EMBL:GFS363... [more] |
| A0A2R6P418 | E-Value: 0.000e+0, PID: 61.94 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A834HEZ3 | E-Value: 0.000e+0, PID: 60.00 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7152... [more] |
| A0A2P5E1Z1 | E-Value: 0.000e+0, PID: 59.45 | (Pentatricopeptide repeat {ECO:0000313|EMBL:PON795... [more] |
| M5Y0G5 | E-Value: 0.000e+0, PID: 60.98 | (Uncharacterized protein {ECO:0000313|EMBL:EMJ2771... [more] |
| A0A5J5B171 | E-Value: 7.800e-10, PID: 63.43 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8535... [more] |
| A0A5E4FIV9 | E-Value: 0.000e+0, PID: 60.77 | (Full=PREDICTED: pentatricopeptide repeat-containi... [more] |
| A0A803Q9M8 | E-Value: 2.874e-6, PID: 59.35 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
