MAVGVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVS
QVRASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKI
VFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTV
KSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLA
PVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFP
SSAVIAHSPLLLSPQDLELVTKLDSTRRRTYEAQVTQQGEYESLHRDLMI
GFGTWEFDPMELKNPFPNNEGSVHLWQGDEDRLAPVTLQRYIAQKLPWIQ
YHELAGAGHLFPLADGFGNAIMKALLIGEDTIL*
| Relationships |
|---|
| The polypeptide, DCAR_020757, derives from mRNA, DCAR_020757. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B6ZGL3 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0
Identity = 279/382 (73.04%), Postives = 320/382 (83.77%), Query Frame = 0
Query: 1 MAVGVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVSQVRASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKIVFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTVKSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLAPVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFPSSAVIAHSPLLLSPQDLELVTKLDSTRRRTYEAQVTQQGEYESLHRDLMIGFGTWEFDPMELKNPFPNNEGSVHLWQGDEDRLAPVTLQRYIAQKLPWIQYHELAGAGHLFPLADGFGNAIMKALLIGEDTI 382
MA GVNRKISA++AR+HTRK + +SFQL M ++ + +A++PPPPK CGSPDGPPVT +RIKL DGRHLAY E GV +DVAKYKIVFVHGF SC+HD V+ ATLSPDV++ LG+YIVSFDRPGYGESDPNP RTVKS+A+DIEELADQL LG K YVVG+SMGGQ IW+CLKYIPHRLAGATL+APVVNYWW GFP+NLS+EAYYQQ +DQWTLRVAHY+PWLT+WWNTQ WFP S+VIA+ + S QDLELV L S R+ YEAQV QQGEYESLHRDLMIGFGTWEFDPM+LKNPFPNNEGSVHLWQGDED P TLQRYIAQ+LPWI +HEL+G GH+FPLADG G+AI+KALLIGE++I
Sbjct: 1 MAAGVNRKISASAARSHTRKGKQNTSFQLPRGMFKKIL--VVFFMGLLAWAYQATQPPPPKICGSPDGPPVTATRIKLKDGRHLAYKEHGVTKDVAKYKIVFVHGFDSCRHDTVVAATLSPDVVEGLGVYIVSFDRPGYGESDPNPKRTVKSLALDIEELADQLGLGSKFYVVGFSMGGQVIWTCLKYIPHRLAGATLIAPVVNYWWPGFPANLSKEAYYQQFPRDQWTLRVAHYIPWLTYWWNTQNWFPFSSVIANCTAVFSRQDLELVPSLSS--RKGYEAQVRQQGEYESLHRDLMIGFGTWEFDPMDLKNPFPNNEGSVHLWQGDEDGFVPFTLQRYIAQQLPWIHFHELSGTGHMFPLADGMGDAIIKALLIGENSI 378
Match: A0A5J4ZMZ8 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 276/382 (72.25%), Postives = 315/382 (82.46%), Query Frame = 0
Query: 1 MAVGVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVSQVRASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKIVFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTVKSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLAPVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFPSSAVIAHSPLLLSPQDLELVTKLDSTRRRTYEAQVTQQGEYESLHRDLMIGFGTWEFDPMELKNPFPNNEGSVHLWQGDEDRLAPVTLQRYIAQKLPWIQYHELAGAGHLFPLADGFGNAIMKALLIGEDTI 382
MA GVNRKISAASAR+HTRK + SSFQL S M ++ + +A+RPP PK CGSPDGPPVT +RIKLSDGRHLAY E GV +DVAKYKIVFVHGF SC+HD V+ TLSPDV++ LG+YIVSFDRPGYGESDPNP RT+KS+ +DIEELADQL LG K YVVG+SMGGQ IW+CLKYIPHRLAGATL+APVVNYWW GFP+NLS+EAY QQ QDQW LR+AHY PWLT+WWNTQKWFP +VI++S S +DLEL+ + S R+ YEAQV QQGE+ESLHRD+MIGFGTWEFDPM+LKNPFPNNEGSVHLW GDED PVTLQRYIAQ+LPWI YHEL G GH+FPLADG G+AI+KALLIGED+I
Sbjct: 1 MAAGVNRKISAASARSHTRKGKQNSSFQLPSGMFKTIL--VVFFMGLLAWAYQATRPPQPKICGSPDGPPVTATRIKLSDGRHLAYKEHGVNKDVAKYKIVFVHGFDSCRHDTVVATTLSPDVVEDLGVYIVSFDRPGYGESDPNPKRTLKSLPLDIEELADQLGLGSKFYVVGFSMGGQVIWTCLKYIPHRLAGATLIAPVVNYWWPGFPANLSKEAYSQQFPQDQWALRIAHYTPWLTYWWNTQKWFPGCSVISNSIDDFSRRDLELLPRFSS--RKGYEAQVRQQGEFESLHRDMMIGFGTWEFDPMDLKNPFPNNEGSVHLWMGDEDGFVPVTLQRYIAQQLPWIHYHELPGMGHMFPLADGMGDAIIKALLIGEDSI 378
Match: D7TJ60 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 574.704 bits (1480), Expect = 0.000e+0
Identity = 275/380 (72.37%), Postives = 316/380 (83.16%), Query Frame = 0
Query: 1 MAVGVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVSQVRASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKIVFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTVKSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLAPVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFPSSAVIAHSPLLLSPQDLEL-VTKLDSTRRRTYEAQVTQQGEYESLHRDLMIGFGTWEFDPMELKNPFPNNEGSVHLWQGDEDRLAPVTLQRYIAQKLPWIQYHELAGAGHLFPLADGFGNAIMKALLIGE 379
MA GVNRKISAASARAHTRK++ SSF+L S M ++ L +A + PPPK CGSPDGPPVT SRIKLSDGRHLAY E G+P+D AKYKIV+VHGF SC+HD V+ +LSP++++ LGIYIVSFDRPGYGESDPNP RTVKSI +DIEELADQL LG K YV+G+SMGGQ IWSCLKYIPHRLAGATL+APVVNYWW FP+NLS+EAYYQQ QDQWTLRVAHY PWLT+WWNTQKWFP+S+V HS +LS QD EL +TKL ++R+ Y AQV QQGE+ES+HRDLMIGFGTWEFDPM+LKNPFPNNEGSVHLW GDED + PV+LQRYIAQ+LPWIQYHE+ GAGHLFP A+G +AI+KALL GE
Sbjct: 1 MAGGVNRKISAASARAHTRKSRQSSSFRLPSGMFKKILVVL--LMGFLAWAYQAIQSPPPKICGSPDGPPVTASRIKLSDGRHLAYKEHGIPKDRAKYKIVYVHGFDSCRHDVVVATSLSPEIVEELGIYIVSFDRPGYGESDPNPKRTVKSIPLDIEELADQLGLGSKFYVIGFSMGGQVIWSCLKYIPHRLAGATLIAPVVNYWWPSFPANLSKEAYYQQFRQDQWTLRVAHYTPWLTYWWNTQKWFPASSVAEHSTDILSHQDKELMLTKL--SKRKEYMAQVRQQGEFESIHRDLMIGFGTWEFDPMDLKNPFPNNEGSVHLWHGDEDAMVPVSLQRYIAQQLPWIQYHEVPGAGHLFPYAEGRTDAIIKALLTGE 376
Match: A0A5B6ZDW8 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 571.622 bits (1472), Expect = 0.000e+0
Identity = 265/382 (69.37%), Postives = 316/382 (82.72%), Query Frame = 0
Query: 1 MAVGVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVSQVRASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKIVFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTVKSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLAPVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFPSSAVIAHSPLLLSPQDLELVTKLDSTRRRTYEAQVTQQGEYESLHRDLMIGFGTWEFDPMELKNPFPNNEGSVHLWQGDEDRLAPVTLQRYIAQKLPWIQYHELAGAGHLFPLADGFGNAIMKALLIGEDTI 382
MA GVNRKISA++AR+HTRK + +SFQL M ++ + +A++PPPPK CGSPDGPPVT +RIKL DGRHLAY E GV +DVAKYKIVFVHGF SC+HD V+ ATLSPDV++ LG+YIVSFDRPGYGESDPNP RTVKS+A+DIEELADQL LG K Y+VG+SMGGQ IW+CLKYIPHRLAGATL+AP VNYWW G P+NLS+EAY Q L QDQWTLR+AHY PWLT+WWNTQ WFP+ ++IAHSP +LS QDLEL+ ++ + R+ +EAQV QQGE+ES+HRDLMIGFG WEFDPM+LKNPF NNEGSVH+W GDEDR+ PV LQRYIAQ+LPWI YHE+ GAGH+FP ADG G+AI+ ALLIG +++
Sbjct: 1 MAAGVNRKISASAARSHTRKGKQNTSFQLPRGMFKKIL--VVFFMGLLAWAYQATQPPPPKICGSPDGPPVTATRIKLKDGRHLAYKEHGVTKDVAKYKIVFVHGFDSCRHDTVVAATLSPDVVEGLGVYIVSFDRPGYGESDPNPKRTVKSLALDIEELADQLGLGAKFYIVGFSMGGQLIWTCLKYIPHRLAGATLIAPAVNYWWFGLPANLSKEAYSQNLPQDQWTLRIAHYAPWLTYWWNTQNWFPAFSIIAHSPAILSRQDLELLPRI--SLRKAHEAQVRQQGEFESIHRDLMIGFGPWEFDPMDLKNPFLNNEGSVHIWHGDEDRVVPVMLQRYIAQRLPWIHYHEVPGAGHMFPYADGMGDAIINALLIGNNSL 378
Match: A0A5B6ZEL9 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 268/384 (69.79%), Postives = 317/384 (82.55%), Query Frame = 0
Query: 1 MAVGVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVSQ--VRASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKIVFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTVKSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLAPVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFPSSAVIAHSPLLLSPQDLELVTKLDSTRRRTYEAQVTQQGEYESLHRDLMIGFGTWEFDPMELKNPFPNNEGSVHLWQGDEDRLAPVTLQRYIAQKLPWIQYHELAGAGHLFPLADGFGNAIMKALLIGEDTI 382
MA GVNRKISAASARAHTRK + S FQL S M + + +F M + +A RPPPPK CGSP+GPPVT +RIKL DGRHLAY E GVP+DVAKYKIV++HGF SC+HD V TLSPDV++ LG+YIVSFDRPGYGESDPNP +TVKS+A+DIEELADQL LG K Y+VG+SMGGQ IW+CLKYIPHRLAGATL+AP VNYWW G P+NLS+EAY Q L QDQWTLR+AHY PWLT+WWNTQ WFP+ ++IAHSP +LS QDLEL+ ++ + R+ +EAQV QQGE+ES+HRDLMIGFG WEFDPM+LKNPF NNEGSVH+W GDEDR+ PV LQRYIAQ+LPWI YHE+ GAGH+FP ADG G+AI+ ALLIG +++
Sbjct: 1 MAAGVNRKISAASARAHTRKAKQNSFFQLPSGM----LKKMLVVFFMGILAWAYQAIRPPPPKICGSPNGPPVTATRIKLGDGRHLAYKEHGVPKDVAKYKIVYIHGFDSCRHDVVCATTLSPDVVEGLGVYIVSFDRPGYGESDPNPKQTVKSLALDIEELADQLGLGAKFYIVGFSMGGQLIWTCLKYIPHRLAGATLIAPAVNYWWFGLPANLSKEAYSQNLPQDQWTLRIAHYAPWLTYWWNTQNWFPAFSIIAHSPAILSRQDLELLPRI--SLRKAHEAQVRQQGEFESIHRDLMIGFGPWEFDPMDLKNPFLNNEGSVHIWHGDEDRVVPVMLQRYIAQRLPWIHYHEVPGAGHMFPYADGMGDAIINALLIGNNSL 378
Match: A0A1Q3CJ03 ((Abhydrolase_6 domain-containing protein {ECO:0000313|EMBL:GAV80197.1}))
HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 269/383 (70.23%), Postives = 312/383 (81.46%), Query Frame = 0
Query: 1 MAVGVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVSQV----RASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKIVFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTVKSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLAPVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFPSSAVIAHSPLLLSPQDLELVTKLDSTRRRTYEAQVTQQGEYESLHRDLMIGFGTWEFDPMELKNPFPNNEGSVHLWQGDEDRLAPVTLQRYIAQKLPWIQYHELAGAGHLFPLADGFGNAIMKALLIGE 379
MA GVNRKISAASARAHTR+ + SSFQL + + V +FV + +A +PPPPKTCGSPDGP VT RIKL DGRHLAY E+GV +D AKYKIV+ HGF SC+HDA++ TLSP++I+ LG+Y+VSFDRPGYGESDP+P RT KSIA+DIEELADQL LG K YV+G+SMGG+ IW+CLKYIPHRLAGATLLAPVVNYWW GFP+NLS+EAYY+QLTQDQWTLRVAHY+PWLT+WWNTQKWFP+S+V AHS +LS QD EL+ KL R+ Y QV QQGEYESLHRDLM+GFGTWEFDPM+++NP PNNEGSVHLW GDED PVTLQRYIAQ+LPWI YHEL GAGH+FP ADG + I+K LL GE
Sbjct: 1 MAGGVNRKISAASARAHTRRNRQNSSFQLPAGILKKV------FAVLFVGSLAWAYQAIQPPPPKTCGSPDGPSVTAPRIKLRDGRHLAYKEYGVSKDEAKYKIVYSHGFDSCRHDAIVATTLSPEIIEDLGVYVVSFDRPGYGESDPDPQRTPKSIALDIEELADQLRLGSKFYVIGFSMGGEVIWTCLKYIPHRLAGATLLAPVVNYWWPGFPANLSKEAYYEQLTQDQWTLRVAHYVPWLTYWWNTQKWFPASSVAAHSTDILSRQDKELMPKL--AHRQNYVTQVKQQGEYESLHRDLMVGFGTWEFDPMDMENPIPNNEGSVHLWHGDEDGFVPVTLQRYIAQRLPWIHYHELTGAGHMFPYADGMCDTIIKLLLTGE 375
Match: A0A061ETT5 ((Alpha/beta-Hydrolases superfamily protein {ECO:0000313|EMBL:EOY08221.1}))
HSP 1 Score: 565.459 bits (1456), Expect = 0.000e+0
Identity = 272/376 (72.34%), Postives = 309/376 (82.18%), Query Frame = 0
Query: 4 GVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVSQVRASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKIVFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTVKSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLAPVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFPSSAVIAHSPLLLSPQDLELVTKLDSTRRRTYEAQVTQQGEYESLHRDLMIGFGTWEFDPMELKNPFPNNEGSVHLWQGDEDRLAPVTLQRYIAQKLPWIQYHELAGAGHLFPLADGFGNAIMKALLIGE 379
GVNRKISAASARAHTR+ + +SF+L S + ++ + +A +PP PKTCGSPDG PVT SRIKL DGRHLAY E GVPRD AKYKIVFVHGF C+HDAV+ TLS ++++ LG+YIVSFDRPGYGESDPNP RTVKS+A+DIEELADQL LG K YV+G+SMGGQ IWSCLKYIPHRLAGATL+APVVNYWWSGFP+NLS+EAY+QQL QDQWTLRV+HY WLT+WWNTQKWFPSS+VIAHS +LS QD EL+ K+ ST R + A V QQGEYESLHRDL IGFGTWEF PM+L NPFPNNEGSVHLW GDEDRL PVTLQRYI Q+LPWI YHEL GAGH+FP ADG N I+KALL+GE
Sbjct: 3 GVNRKISAASARAHTRRAKENTSFKLPSGIFTKILLVLS--VGILAWAYQAIQPPLPKTCGSPDGLPVTASRIKLKDGRHLAYKEHGVPRDKAKYKIVFVHGFDCCRHDAVVATTLSLEIVETLGVYIVSFDRPGYGESDPNPRRTVKSMALDIEELADQLGLGSKFYVIGFSMGGQVIWSCLKYIPHRLAGATLVAPVVNYWWSGFPTNLSKEAYHQQLPQDQWTLRVSHYASWLTYWWNTQKWFPSSSVIAHSTDILSSQDKELLPKIVST--RNHRALVRQQGEYESLHRDLNIGFGTWEFSPMDLDNPFPNNEGSVHLWHGDEDRLVPVTLQRYIVQQLPWIHYHELPGAGHMFPHADGMSNNIVKALLVGE 374
Match: A0A6J1AQK8 ((uncharacterized protein LOC110420332 {ECO:0000313|RefSeq:XP_021289283.1}))
HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 271/376 (72.07%), Postives = 309/376 (82.18%), Query Frame = 0
Query: 4 GVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVSQVRASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKIVFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTVKSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLAPVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFPSSAVIAHSPLLLSPQDLELVTKLDSTRRRTYEAQVTQQGEYESLHRDLMIGFGTWEFDPMELKNPFPNNEGSVHLWQGDEDRLAPVTLQRYIAQKLPWIQYHELAGAGHLFPLADGFGNAIMKALLIGE 379
GVNRKISAASARAHTR+ + +SF+L S + ++ + +A +PP PKTCGSPDGPPVT SRIKL DGRHLAY E GVPR AKYKIVFVHGF C+HDAV+ TLS ++++ LG++IVSFDRPGYGESDPNP RTVKS+A+DIEELADQL LG K YV+G+SMGGQ IWSCLKYIPHRLAGATL+APVVNYWWSGFP+NLS+EAY+QQL QDQWTLRV+HY PWLT+WWNTQKWFPSS+VI HSP +LS QD EL+ K+ ST R + A V QQGEYESLHRDL IGFGTWEF PM+L NPFPNNEGSVHLW GDED L PVTLQRYI Q+LPWI YHEL GAGH+FP ADG N I+KALL+GE
Sbjct: 3 GVNRKISAASARAHTRRAKENTSFKLPSGIFTKILLVLS--VGILAWAYQAIQPPLPKTCGSPDGPPVTASRIKLKDGRHLAYKEHGVPRHAAKYKIVFVHGFDCCRHDAVVATTLSLEIVETLGVHIVSFDRPGYGESDPNPRRTVKSMALDIEELADQLGLGSKFYVIGFSMGGQVIWSCLKYIPHRLAGATLVAPVVNYWWSGFPTNLSKEAYHQQLPQDQWTLRVSHYAPWLTYWWNTQKWFPSSSVIDHSPDILSSQDKELLPKIVST--RNHRALVRQQGEYESLHRDLNIGFGTWEFSPMDLDNPFPNNEGSVHLWHGDEDGLVPVTLQRYIVQQLPWIHYHELPGAGHMFPHADGMSNNIVKALLVGE 374
Match: A0A2R6Q3D7 ((Lysophospholipase BODYGUARD 2 {ECO:0000313|EMBL:PSS01373.1}))
HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 267/381 (70.08%), Postives = 313/381 (82.15%), Query Frame = 0
Query: 1 MAVGVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVSQVRASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKIVFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTVKSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLAPVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFPSSAVIAHSPLLLSPQDLELVTKLDSTRRRTYEAQVTQQGEYESLHRDLMIGFGTWEFDPMELKNPFPNNEGSVHLWQGDEDRLAPVTLQRYIAQKLPWIQYHELAGAGHLFPLADGFGNAIMKALLIGEDT 381
MA GV+RKISAASARAHTR+ + + FQL S M ++ F + Q A +PPPPK CGS DGPPVT RIKLSDGRHLAY E GVP+D AKYKIV+VHGF SC+HDAVI +LSPD+I+ LG+YIVSFDRPGYGESDPNP RT+KS+A+DIEELADQL LG K YV G+SMGGQ +W+CLKYIPHRLAGATL+APV+NYWW G P+NLS+EA+ QQ D+W+ RVAHY+PWLT+WWNTQKWFP+ +VIAHSP +LS QDLEL+ +L S R+ YE QV QQGE+ESLHRDLMIGFGTWEFDPM L+NPFPNNEG H+W GDED L PV+LQRYIAQ++PWI YHEL GAGH+FP ADG NAI+KALLIGE++
Sbjct: 1 MAAGVSRKISAASARAHTRRPKQGTPFQLPSGMFKKILVVFFMGFMAWAYQ--AIQPPPPKICGSADGPPVTAPRIKLSDGRHLAYKEHGVPKDKAKYKIVYVHGFDSCRHDAVIATSLSPDIIEGLGVYIVSFDRPGYGESDPNPKRTLKSMALDIEELADQLGLGSKFYVAGFSMGGQYLWTCLKYIPHRLAGATLIAPVINYWWPGIPANLSKEAHDQQFPSDRWSNRVAHYIPWLTYWWNTQKWFPACSVIAHSPAILSRQDLELLPRLAS--RKQYEPQVRQQGEFESLHRDLMIGFGTWEFDPMNLENPFPNNEGLFHIWHGDEDVLVPVSLQRYIAQQVPWINYHELPGAGHMFPHADGMVNAIVKALLIGENS 377
Match: A0A834ZCJ6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8403275.1}))
HSP 1 Score: 558.525 bits (1438), Expect = 0.000e+0
Identity = 267/378 (70.63%), Postives = 303/378 (80.16%), Query Frame = 0
Query: 3 VGVNRKISAASARAHTRKTQHKSSFQLSSEMSFPVIDRAHGLFSMFVSQVRASRPPPPKTCGSPDGPPVTGSRIKLSDGRHLAYTEFGVPRDVAKYKIVFVHGFGSCKHDAVILATLSPDVIKHLGIYIVSFDRPGYGESDPNPNRTVKSIAMDIEELADQLELGPKIYVVGYSMGGQPIWSCLKYIPHRLAGATLLAPVVNYWWSGFPSNLSREAYYQQLTQDQWTLRVAHYLPWLTHWWNTQKWFPSSAVIAHSPLLLSPQDLELVTKLDSTRRRTYEAQVTQQGEYESLHRDLMIGFGTWEFDPMELKNPFPNNE-GSVHLWQGDEDRLAPVTLQRYIAQKLPWIQYHELAGAGHLFPLADGFGNAIMKALLIGE 379
VG+NRKISAASAR HTR+ + SSF L S M F I L +A +PP PK CG+PDGPP+T RIKL DGRHLAY E GVP+D AKYKI+FVHGFGSC+HDA+I LSP+V + G+Y+VSFDR GYGESDPNP RTVKS A+DIEELADQL LG K+YV+GYSMGGQ IWSCLKYIPHRLAGATL+APVVNYWW GFP+NLS+EAYYQQ QDQWTLRV+HY PWLT+WWNTQKWFP+S+ +P + S D EL+ K S R YEAQV QQGE+ESLHRD+MIGFG+WEFDPM+L+NPFPNNE GSVHLW GDED PVTLQRYIA+KLPWI YHEL GAGHLFPLADG AI+KALL+GE
Sbjct: 2 VGMNRKISAASARTHTRRAKQNSSFHLPSGM-FKKISVVL-LVGFLAWAYKAIQPPSPKICGTPDGPPITAPRIKLKDGRHLAYKEHGVPKDTAKYKIIFVHGFGSCRHDAIIATDLSPEVAEEQGVYVVSFDRAGYGESDPNPKRTVKSTALDIEELADQLGLGSKLYVIGYSMGGQVIWSCLKYIPHRLAGATLIAPVVNYWWPGFPTNLSKEAYYQQFQQDQWTLRVSHYTPWLTYWWNTQKWFPASSTGGRNPDIFSRHDKELLPKFSS--REKYEAQVKQQGEFESLHRDMMIGFGSWEFDPMDLENPFPNNEGGSVHLWHGDEDGFVPVTLQRYIARKLPWIHYHELKGAGHLFPLADGVSYAILKALLLGE 375
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZGL3 | E-Value: 0.000e+0, PID: 73.04 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
| A0A5J4ZMZ8 | E-Value: 0.000e+0, PID: 72.25 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
| D7TJ60 | E-Value: 0.000e+0, PID: 72.37 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
| A0A5B6ZDW8 | E-Value: 0.000e+0, PID: 69.37 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
| A0A5B6ZEL9 | E-Value: 0.000e+0, PID: 69.79 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
| A0A1Q3CJ03 | E-Value: 0.000e+0, PID: 70.23 | (Abhydrolase_6 domain-containing protein {ECO:0000... [more] |
| A0A061ETT5 | E-Value: 0.000e+0, PID: 72.34 | (Alpha/beta-Hydrolases superfamily protein {ECO:00... [more] |
| A0A6J1AQK8 | E-Value: 0.000e+0, PID: 72.07 | (uncharacterized protein LOC110420332 {ECO:0000313... [more] |
| A0A2R6Q3D7 | E-Value: 0.000e+0, PID: 70.08 | (Lysophospholipase BODYGUARD 2 {ECO:0000313|EMBL:P... [more] |
| A0A834ZCJ6 | E-Value: 0.000e+0, PID: 70.63 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8403... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |