Resource Type:
Polypeptide
Name:
DCAR_022939
Identifier:
DCAR_022939.mRNA-protein
Sequence:
MAASSESIAPCLSVSEDNAAATKSSASSSPWMKPVNGVVEPVMGRDSWPT
ITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQKADTNGS
PNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFPIPF
GLLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGN
YGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHMHQMAPPPPPPPR
FMRPGLPGSTPFIPLPHVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPS
QVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNI
SVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSR
QVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFP
GKISGEATSSQTKVGNGVDTAGEV*
Sequence Length:
475
Sequence Checksum:
5cdfe8022dc5eb6284344408fb753cbb
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_022939, derives from mRNA, DCAR_022939. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YW52 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35878.1}))
HSP 1 Score: 347.821 bits (891), Expect = 8.224e-112
Identity = 222/457 (48.58%), Postives = 291/457 (63.68%), Query Frame = 0
Match: A0A5B6YW52 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35878.1}))
HSP 1 Score: 347.821 bits (891), Expect = 8.224e-112
Identity = 222/457 (48.58%), Postives = 291/457 (63.68%), Query Frame = 0
Query: 31 WMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFP-----IPFG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPFIPLPHV--YGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
W KP+NGVVE PVMG SWP ++ESTR S ++ S SVS+S+G V S++ QK +TN +PN + + H PVRQR KRGGG+ GGS QS F+RP PP P P P P +P+G L+P + DL +EPP+KGN W++RP+GG Q + GND S R+ SRR N+G RPRGDG ++N + GRRDQDR+WN R+S RDVH+ HQMAPP R RP GSTPFIP V +GNP+ F+ P Y P PES R V + + P+ FP +DP+LP+LL++QIDYYFSD NL+KD+FL+S MD+QGWV I++IA+F RV LT+N+ LILD+L STVVEVQGDK+RR + W+KWIS S + DS + +L TS + + LDE ++ ++ D+H EV PG+ S E Q K+ NG T E
Sbjct: 115 WNKPLNGVVEVGPVMGGAVSWPALSESTRPSPKPSS------DSSKPISDGSVSISQGPVISHSPQKQVNTNANPNFTPN--HTLPVRQRSMKRGGGSGGGSAQSNFTRPPPPPPPPLPPPFPLFDVPYGTLVPALPDLSPKEPPYKGNNWDTRPIGGFVPQPHAGNDQPSHRNSSRRSNFGPRPRGDGPYHNSNVGRRDQDRDWNGSRSSNVRDVHLQHQMAPP-----RGFRPPPLGSTPFIPTQPVRSFGNPINFDMTSPYFYVPTPHPESFRAVQFVAPALQQPMYFPVLDPHLPTLLISQIDYYFSDANLIKDDFLKSNMDDQGWVPITLIASFPRVQHLTNNIHLILDSLRASTVVEVQGDKVRRHNEWRKWISFSDRFPTDSGPLYSGGSVYNMLPTSFRKVALDEVTINRNSVIDKADSHTEVDPGRCSSEELIGQPKLANGEGTKEEA 558
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YVQ8 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35877.1}))
HSP 1 Score: 346.665 bits (888), Expect = 2.255e-111
Identity = 229/498 (45.98%), Postives = 307/498 (61.65%), Query Frame = 0
Match: A0A5B6YVQ8 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35877.1}))
HSP 1 Score: 346.665 bits (888), Expect = 2.255e-111
Identity = 229/498 (45.98%), Postives = 307/498 (61.65%), Query Frame = 0
Query: 1 MAASSESIAPCLSVSEDNAAATKSSASSS-----------PWMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFP-----IPFG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPFIPLPHV--YGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
+ S S AP ++ ++++AA T+ S S W KP+NG VE PVMG +WP ++ESTR S ++ S SVS+S+G V S++ QK +TN +PN + + H PVRQR KRGGG+ GGS QS F+RP PP P P P P +P+G L+P + DL +EPP+KGN W++RP+GG Q + GND S R+ SRR N+G RPRGDG ++N + GRRDQDR+WN R+S RDVH+ HQMAPP R RP GSTPFIP V +GNP+ F+ P Y P PES R V + + P+ FP +DP+LP+LL++QIDYYFSD NL+KD+FL+S MD+QGWV I++IA+F RV LT+N+ LILD+L STVVEVQGDK+RR + W+KWIS S + DS + +L TS + + LDE ++ ++ D+H EV PG+ S E Q K+ NG T E
Sbjct: 73 FSDCSASKAPSMA-ADNSAAETQLENSDSNNSNVGHPKRPAWNKPLNGEVEAGPVMGGAVTWPALSESTRPSPKPSS------DSSKPISDGSVSISQGPVISHSPQKQVNTNANPNFTPN--HTLPVRQRSMKRGGGSGGGSAQSNFTRPPPPPPPPLPPPFPLFDVPYGTLVPALPDLSPKEPPYKGNNWDTRPIGGFVPQPHAGNDQPSHRNSSRRSNFGPRPRGDGPYHNSNVGRRDQDRDWNGSRSSNVRDVHLQHQMAPP-----RGFRPPPLGSTPFIPTQPVRSFGNPINFDMTSPYFYVPTPHPESFRAVQFVAPALQQPMYFPVLDPHLPTLLISQIDYYFSDANLIKDDFLKSNMDDQGWVPITLIASFPRVQHLTNNIHLILDSLRASTVVEVQGDKVRRHNEWRKWISFSDRFPTDSGPLYSGGSVYNMLPTSFRKVALDEVTINRNSVIDKADSHTEVDPGRCSSEELIGQPKLANGEGTKEEA 556
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YWY6 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35876.1}))
HSP 1 Score: 343.969 bits (881), Expect = 2.619e-110
Identity = 225/456 (49.34%), Postives = 294/456 (64.47%), Query Frame = 0
Match: A0A5B6YWY6 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35876.1}))
HSP 1 Score: 343.969 bits (881), Expect = 2.619e-110
Identity = 225/456 (49.34%), Postives = 294/456 (64.47%), Query Frame = 0
Query: 31 WMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPF---PIPFG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPF-IPLP-HVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQV-DPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
W KP+NGVVE PVMG SWP ++ESTR S P ++ S SVS+S+G V S++ QK +TN +PN + + H PVRQR KRGGG GS QS F+RP PP P PPPF +P+G L+P + DL REP ++ N WE+RP+GG +S+ GNDH SQR+ SRR N+G RPRGDG ++N +G RR+QDR+W+ R+S RDV++ HQ+ PP F RP PGS+PF IP P +GN M F+ P LY LPPES R VP + PP + FP +DP+LP+LLV+QI+YYFSD NL+KD+FL+S MD++GWV I++IA+F RV LT N+QLIL +L ST VEVQGDK+RRR+ W+KWI S Q DS SP +L TS Q +TLDE+ + + D H+E PG+ S E + Q+K+ NG T E
Sbjct: 115 WNKPLNGVVEVGPVMGGAVSWPALSESTR------PSPKPSSDSSKPISDGSVSISQGPVISHSPQKQVNTNANPNFTPN--HTLPVRQRSMKRGGG---GSAQSNFTRPPPPPPLPPPFPLFEVPYGTLVPAVPDLSPREPLYRSNNWETRPIGGFVPKSHAGNDHPSQRNSSRRSNFGPRPRGDGSYHNNYGSRRNQDRDWSAARSSNVRDVNVQHQIHPPR----SFGRPPPPGSSPFTIPQPVRSFGNSMSFDMTSPFLYVSTLPPESFRSVPFVGPAPPPTMFFPVLDPSLPTLLVHQIEYYFSDANLIKDDFLKSNMDDEGWVPITLIASFPRVQHLTYNIQLILHSLRASTAVEVQGDKVRRRNEWRKWIPASGQFPTDDSGSHSPNGSGYSMLATSFQKVTLDEATINHNSAMGKADPHIEAAPGRCSSEELTGQSKLANGEGTNEEA 555
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YW18 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35875.1}))
HSP 1 Score: 342.428 bits (877), Expect = 1.235e-109
Identity = 224/456 (49.12%), Postives = 293/456 (64.25%), Query Frame = 0
Match: A0A5B6YW18 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35875.1}))
HSP 1 Score: 342.428 bits (877), Expect = 1.235e-109
Identity = 224/456 (49.12%), Postives = 293/456 (64.25%), Query Frame = 0
Query: 31 WMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPF---PIPFG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPFI-PLP-HVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQV-DPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
W KP+NGVVE PVMG SWP ++ESTR S P ++ S SVS+S+G V S++ QK +TN +PN + + H PVRQR KRGGG GS QS F+RP PP P PPPF +P+G L+P + DL REP ++ N WE+RP+GG +S+ GNDH SQR+ SRR N+G RPRGDG ++N +G RR+QDR+W+ R+S RDV++ HQ+ PP F RP PGS+PF P P +GN M F+ P LY LPPES R VP + PP + FP +DP+LP+LLV+QI+YYFSD NL+KD+FL+S MD++GWV I++IA+F RV LT N+QLIL +L ST VEVQGDK+RRR+ W+KWI S Q DS SP +L TS Q +TLDE+ + + D H+E PG+ S E + Q+K+ NG T E
Sbjct: 115 WNKPLNGVVEVGPVMGGAVSWPALSESTR------PSPKPSSDSSKPISDGSVSISQGPVISHSPQKQVNTNANPNFTPN--HTLPVRQRSMKRGGG---GSAQSNFTRPPPPPPLPPPFPLFEVPYGTLVPAVPDLSPREPLYRSNNWETRPIGGFVPKSHAGNDHPSQRNSSRRSNFGPRPRGDGSYHNNYGSRRNQDRDWSAARSSNVRDVNVQHQIHPPR----SFGRPPPPGSSPFTTPQPVRSFGNSMSFDMTSPFLYVSTLPPESFRSVPFVGPAPPPTMFFPVLDPSLPTLLVHQIEYYFSDANLIKDDFLKSNMDDEGWVPITLIASFPRVQHLTYNIQLILHSLRASTAVEVQGDKVRRRNEWRKWIPASGQFPTDDSGSHSPNGSGYSMLATSFQKVTLDEATINHNSAMGKADPHIEAAPGRCSSEELTGQSKLANGEGTNEEA 555
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YW41 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35879.1}))
HSP 1 Score: 342.043 bits (876), Expect = 1.542e-109
Identity = 223/456 (48.90%), Postives = 293/456 (64.25%), Query Frame = 0
Match: A0A5B6YW41 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35879.1}))
HSP 1 Score: 342.043 bits (876), Expect = 1.542e-109
Identity = 223/456 (48.90%), Postives = 293/456 (64.25%), Query Frame = 0
Query: 31 WMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPF---PIPFG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPF-IPLP-HVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQV-DPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
W KP+NG VE PVMG +WP ++ESTR S P ++ S SVS+S+G V S++ QK +TN +PN + + H PVRQR KRGGG GS QS F+RP PP P PPPF +P+G L+P + DL REP ++ N WE+RP+GG +S+ GNDH SQR+ SRR N+G RPRGDG ++N +G RR+QDR+W+ R+S RDV++ HQ+ PP F RP PGS+PF IP P +GN M F+ P LY LPPES R VP + PP + FP +DP+LP+LLV+QI+YYFSD NL+KD+FL+S MD++GWV I++IA+F RV LT N+QLIL +L ST VEVQGDK+RRR+ W+KWI S Q DS SP +L TS Q +TLDE+ + + D H+E PG+ S E + Q+K+ NG T E
Sbjct: 113 WNKPLNGEVEAGPVMGGAVTWPALSESTR------PSPKPSSDSSKPISDGSVSISQGPVISHSPQKQVNTNANPNFTPN--HTLPVRQRSMKRGGG---GSAQSNFTRPPPPPPLPPPFPLFEVPYGTLVPAVPDLSPREPLYRSNNWETRPIGGFVPKSHAGNDHPSQRNSSRRSNFGPRPRGDGSYHNNYGSRRNQDRDWSAARSSNVRDVNVQHQIHPPR----SFGRPPPPGSSPFTIPQPVRSFGNSMSFDMTSPFLYVSTLPPESFRSVPFVGPAPPPTMFFPVLDPSLPTLLVHQIEYYFSDANLIKDDFLKSNMDDEGWVPITLIASFPRVQHLTYNIQLILHSLRASTAVEVQGDKVRRRNEWRKWIPASGQFPTDDSGSHSPNGSGYSMLATSFQKVTLDEATINHNSAMGKADPHIEAAPGRCSSEELTGQSKLANGEGTNEEA 553
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ACP2 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})
HSP 1 Score: 317.005 bits (811), Expect = 7.439e-100
Identity = 216/475 (45.47%), Postives = 274/475 (57.68%), Query Frame = 0
Match: A0A5J5ACP2 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})
HSP 1 Score: 317.005 bits (811), Expect = 7.439e-100
Identity = 216/475 (45.47%), Postives = 274/475 (57.68%), Query Frame = 0
Query: 31 WMKPVNGVVE--PVMG-RDSWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQKADTNGSPNSSNHNAHPH-------PVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTP-------------------PPFPIPFGLLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHMHQMAPPPPPPPRFMRPGLPGSTPFIPLPHV--YGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
W KP+NGV++ PVMG SWP ++ESTR SS D + + + S+ + + + + ++ P N NA+ + P RQR KRGGG GS QS F+R PP P P P F +P+ L + REPP+K N WESRP+GG S+S+ GNDH SQR+ SRRGN+G RPRGDG H+N +G RRD DR+W+ R+S RDV HQ P P +R PGST FI V +GNPM F+ P +Y LP ES RGVP +P PPP+ FP DP+LP LL+NQIDYYFSDDNLVKD FL+S MD+QGWV I++IA F RV LT N+QLILD+L STVVEVQGDK+RRR+ W+KWI S + DS SP +L TS Q +TLDE + + D E PG+ S E + Q+K+ NG T E
Sbjct: 104 WNKPLNGVIDVSPVMGGAGSWPALSESTRPKPSPDSSKPILDGSVSISQVQSLKTYRQTHGGHTNVPVISHSPPKQVNTNANRNFTPNPTLPARQRSMKRGGG---GSAQSNFTRLPPPPPPPPPPPPPPPPPLPLPLPQPFPSFELPYSTL-----VSPREPPYKSNYWESRPIGGFFSKSHAGNDHPSQRNSSRRGNFGPRPRGDGSHHNSYGSRRDHDRDWSASRSSNVRDV-PHQT----PSPRSSIRHPPPGSTSFITAQPVGPFGNPMSFDMRPPFIY---LPSESFRGVPFVPPMSPPPMFFPVSDPSLPGLLLNQIDYYFSDDNLVKDNFLKSNMDDQGWVPITLIAGFPRVQHLTCNIQLILDSLRASTVVEVQGDKVRRRNEWRKWIPTSGRFPTDSGSHSPSVSGYNILATSFQKVTLDEVSINCSSAMGKADPVTEAAPGRHSSEELAGQSKLANGEGTDEEA 562
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103YES4 ((RNA-binding protein Lupus La {ECO:0000313|EMBL:KVI07751.1}))
HSP 1 Score: 312.768 bits (800), Expect = 2.908e-98
Identity = 214/459 (46.62%), Postives = 280/459 (61.00%), Query Frame = 0
Match: A0A103YES4 ((RNA-binding protein Lupus La {ECO:0000313|EMBL:KVI07751.1}))
HSP 1 Score: 312.768 bits (800), Expect = 2.908e-98
Identity = 214/459 (46.62%), Postives = 280/459 (61.00%), Query Frame = 0
Query: 4 SSESIAPCLSVSEDNAAATKSSASSSPWMKPV-NGVVE----PVMGRDSWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQKADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFPIPFG-LLPPMMDLQVREP-PFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHY--NGHGGRRDQ-DRNWNPPRNSTARDVHMHQMAPPPPPPPR-FMRPGLPGSTPFI-PLPHV-YGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDK-VLETSIQNITLDESDSSKLRTVETGDAHLEV 448
++ ++ + SE + S S W KP NGVV+ PVMG SWP ++E TR L KS S P ++++ S SV+VS+ + QK + + SN N H H +RQR KRGGGA GG+ P PP P P F +P+G +P ++D VRE P+ GN + RP+GGVG SN +DHSS R +R N+G RPR DG Y NGHGGRRD DR+W PR+ A HQM PPPPPPPR +M+ G PFI P P YG PM +E P LY P LPPE RG PL+P PP + P +DP+L L++ QI+YYFSD NLVKD +LRS MDE+GWV +++IA FRRV SLTS++Q+IL++L STVVEVQG+ +RRR+ W KW+ S + DS+ SP D V+ET +Q +TLDES +++ T +T DAH E
Sbjct: 74 TAAAVETHMEGSEGSNNGNASGVKKSAWNKPSPNGVVDGTNTPVMGAASWPALSELTR--PLPKSLSFPSESSSKPTSDGSVTVSQAPIILQPQQKPVKTNASHHSNQN-HTHNLRQRSMKRGGGA-GGAYNRPPPPPPPPMPPFPLFDMPYGSFVPAVLDSPVREQSPYNGNNFAPRPMGGVGPHSNAIHDHSSNR---KRNNFGPRPREDGGLYLNNGHGGRRDHHDRDWRGPRSHGAIP---HQMGPPPPPPPRGYMQQAHLGPAPFIAPQPMRPYGTPMGYEMAAPFLYVPTLPPEPYRGAPLLPRAAPPSMFIPVMDPSLSVLILTQIEYYFSDANLVKDNYLRSNMDEEGWVPVTLIAGFRRVQSLTSDIQMILNSLRDSTVVEVQGETVRRRNEWTKWVKTSNKFPADSSFHSPRAATDGLVVETPLQKLTLDESITAEKMTTDTNDAHNEA 522
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B497 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})
HSP 1 Score: 318.931 bits (816), Expect = 1.549e-95
Identity = 213/446 (47.76%), Postives = 274/446 (61.43%), Query Frame = 0
Match: A0A5J5B497 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})
HSP 1 Score: 318.931 bits (816), Expect = 1.549e-95
Identity = 213/446 (47.76%), Postives = 274/446 (61.43%), Query Frame = 0
Query: 15 SEDNAAATKSSASSSPWMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFP-----IPFGLLPPMM-DLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPFI-PLP-HVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLE 447
+E N +K A W KP+NGVVE PVMG SWP ++ESTR S P ++ S S+ +S+ V S + QK TN +PN + + H PVRQR KRGGG+ GS QS FSRP PP P P P P+ L P++ D R+PP+KGN W++RP+GG SQS+ GND QR SRR N+G RPRGDG ++N + GR +QDR+ N PR+S RDV + HQMAPP F+R PGS PFI P P +GN M F+ +Y LP ES GVP P + FP DP+LP+LLVNQIDYYFSDDNLVKD +L+S M+++GWV I++IA+F RV LT+N+QLILD+L STVVEVQGDK+RRR+ W+KW+ S Q DS SP +L TS Q +TLDE +++ D++ E
Sbjct: 18 NESNVGGSKRPA----WNKPLNGVVEVGPVMGGAVSWPALSESTR------PSPKPSSDSSKPISDGSIPISQEPVISQSPQKQVSTNANPNFTPN--HTLPVRQRSMKRGGGSGVGSKQSNFSRPPPPPPPPLPPQFPLFDAPYSTLVPVLPDFSPRDPPYKGNNWDTRPIGGFVSQSHAGNDQPLQR--SRRSNFGPRPRGDGPYHNSNVGRHNQDRDRNGPRSSNIRDVQVQHQMAPPRS----FIRHPPPGSIPFITPQPVRPFGNQMSFDMASRYVYVSTLPQESFSGVPFFDPATLPGMFFPPPDPHLPTLLVNQIDYYFSDDNLVKDNYLKSNMNDEGWVPITLIASFPRVQHLTNNIQLILDSLRASTVVEVQGDKVRRRNEWRKWVLTSGQFPTDSGSVSPGGSGYNMLATSFQKVTLDEVTTNRSSGTAKADSYTE 445
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5Y7L2 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})
HSP 1 Score: 298.901 bits (764), Expect = 3.848e-93
Identity = 213/458 (46.51%), Postives = 270/458 (58.95%), Query Frame = 0
Match: M5Y7L2 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})
HSP 1 Score: 298.901 bits (764), Expect = 3.848e-93
Identity = 213/458 (46.51%), Postives = 270/458 (58.95%), Query Frame = 0
Query: 3 ASSESIAPCLSVSEDNAAATKSSASSSPWMKPVNGVVE----PVMGRDSWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKS---NAHQKADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGS--VQSGFSRPIPPSPTPPPFPIP-----FG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHMHQMAPPPPPPPRFMRPGLPGSTPFIPLPHV-YGNPMPF--EFVRPILYGPPLPPESLRGVPLIPSQVPPPVVF-PFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVET 441
A S S A + + NAA K A W KP N VE VMG SWP ++ESTR + + S + A + SVSVS+ V + N+ + + N SPNS+++NA P RQRPSKRGGG++ G SGF P P P PP P +G L+P M D R+P F+GN+W+ RPVGG +QS+ NDH R+ SRRGN+G PRGDG ++N HGG+RDQDR ARD HMHQ PP +RP P + F P P + NPM F EFV Y P LP E +RG+P I SQ P P +F P + LPSL+VNQIDYYFSD NL+KD+FLRS MD QGWV IS+IANF RV SLT+N+QLILD+L S++VEV DK+RR + W KWI Q+ +S SSP L L TS + +T++E S+ T E+
Sbjct: 82 ADSSSAAEGSNGNNGNAARPKKPA----WNKPANDDVEVSPTTVMGAVSWPALSESTRASPKLPADSSSKTVSDATVTHGSVSVSQAPVITHSPNSKRHSTNNASPNSTSNNAFP--ARQRPSKRGGGSSTGGGHAHSGFGHPPTPPPPPPFPVFPILPNGYGNLVPTMPDPSSRDPSFRGNSWDVRPVGGFVTQSHQVNDH---RNNSRRGNFGPHPRGDGPYHNNHGGKRDQDRG----NYMNARDAHMHQHRAPPR---GLVRPAPPNTAAFAPQPARPFANPMGFPGEFV----YIPTLPLEPMRGMPFI-SQAPHPTMFIPVAESPLPSLIVNQIDYYFSDANLIKDDFLRSNMDVQGWVPISLIANFPRVKSLTTNIQLILDSLRASSIVEVHDDKVRRLNEWMKWIPAGSQLPFESGSSSPGVLSHNTLATSFEKMTVEEEAPSQTNTTES 518
BLAST of DCAR_022939 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4FGQ7 ((Full=PREDICTED: la-related {ECO:0000313|EMBL:VVA25801.1}))
HSP 1 Score: 298.13 bits (762), Expect = 1.132e-92
Identity = 215/474 (45.36%), Postives = 276/474 (58.23%), Query Frame = 0
Match: A0A5E4FGQ7 ((Full=PREDICTED: la-related {ECO:0000313|EMBL:VVA25801.1}))
HSP 1 Score: 298.13 bits (762), Expect = 1.132e-92
Identity = 215/474 (45.36%), Postives = 276/474 (58.23%), Query Frame = 0
Query: 3 ASSESIAPCLSVSEDNAAATKSSASSSPWMKPVNGVVE----PVMGRDSWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKS---NAHQKADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGS--VQSGFSRPIPPSPTPPPFPIP-----FG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHMHQMAPPPPPPPRFMRPGLPGSTPFIPLPHV-YGNPMPF--EFVRPILYGPPLPPESLRGVPLIPSQVPPPVVF-PFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEA 457
A S S A + + NAA K A W KP N VE VMG SWP ++ESTR + + S + A + SVSVS+ V + N+ + + N SPNS+++NA P RQRPSKRGGG++ G SGF P P P PP P +G L+P M D R+P F+GN+W+ RPVGG +QS+ NDH R+ SRRGN+G PRGDG ++N HGG+RDQDR ARD HMHQ PP +RP P + F P P + NPM F EFV Y P LP E +RG+P I SQ P P +F P + LPSL+VNQIDYYFSD NL+KD+FLRS MD QGWV IS+IANF RV SLT+N+QLILD+L S++VEV DK+RR + W KWI Q+ +S SSP L L TS + +T++E S+ T+ +++ P S E+
Sbjct: 84 ADSSSAAEGSNGNNGNAARPKKPA----WNKPANDDVEVSPTTVMGAVSWPALSESTRASPKLPADSSSKTVSDATVTHGSVSVSQAPVITHSPNSKRHSTNNASPNSTSNNAFP--ARQRPSKRGGGSSIGGGHAHSGFGHPPTPPPPPPFPVFPILPNGYGNLVPTMPDPSSRDPSFRGNSWDVRPVGGFVTQSHQVNDH---RNNSRRGNFGPHPRGDGPYHNNHGGKRDQDRG----NYMNARDAHMHQHRAPPR---GLVRPAPPNTAAFAPQPARPFANPMGFPGEFV----YIPTLPLEPMRGMPFI-SQAPHPTMFIPVAESPLPSLIVNQIDYYFSDANLIKDDFLRSNMDVQGWVPISLIANFPRVKSLTTNIQLILDSLRASSIVEVHDDKVRRLNEWMKWIPAGSQLPFESGSSSPGVLSHNTLATSFEKMTVEEEAPSQTNTMGKLESNSVSIPESCSTES 536
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YW52 | E-Value: 8.224e-112, PID: 48.58 | (Putative la-related protein 1C-like {ECO:0000313|... [more] |
| A0A5B6YVQ8 | E-Value: 2.255e-111, PID: 45.98 | (Putative la-related protein 1C-like {ECO:0000313|... [more] |
| A0A5B6YWY6 | E-Value: 2.619e-110, PID: 49.34 | (Putative la-related protein 1C-like {ECO:0000313|... [more] |
| A0A5B6YW18 | E-Value: 1.235e-109, PID: 49.12 | (Putative la-related protein 1C-like {ECO:0000313|... [more] |
| A0A5B6YW41 | E-Value: 1.542e-109, PID: 48.90 | (Putative la-related protein 1C-like {ECO:0000313|... [more] |
| A0A5J5ACP2 | E-Value: 7.439e-100, PID: 45.47 | HTH La-type RNA-binding domain-containing protein ... [more] |
| A0A103YES4 | E-Value: 2.908e-98, PID: 46.62 | (RNA-binding protein Lupus La {ECO:0000313|EMBL:KV... [more] |
| A0A5J5B497 | E-Value: 1.549e-95, PID: 47.76 | HTH La-type RNA-binding domain-containing protein ... [more] |
| M5Y7L2 | E-Value: 3.848e-93, PID: 46.51 | HTH La-type RNA-binding domain-containing protein ... [more] |
| A0A5E4FGQ7 | E-Value: 1.132e-92, PID: 45.36 | (Full=PREDICTED: la-related {ECO:0000313|EMBL:VVA2... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |