Resource Type:
Polypeptide
Name:
DCAR_021932
Identifier:
DCAR_021932.mRNA-protein
Sequence:
MDPCPFVRIVVKNLALKFGVLKSDTFCYCKIKLRDFATQTSKICVVLQEN
QQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFG
GGKKIGSVSLDLKSVENRVCVIQNGWVEIGNGVKLNLNVRIEPDPRFVFQ
FDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKS
RSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNR
VCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLI
LTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKN
GGKFIIDNSTGPSPMSTPSSSFDSGSISSSDVGSGSWAHLLYRGFVMSST
VMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLR
KELRQPGHE*
Sequence Length:
460
Sequence Checksum:
cdb0b8b54809e0f82f0d5f6edc570ebc
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_021932, derives from mRNA, DCAR_021932. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B378 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536302.1}))
HSP 1 Score: 511.916 bits (1317), Expect = 4.141e-178
Identity = 284/474 (59.92%), Postives = 332/474 (70.04%), Query Frame = 0
Match: A0A5J5B378 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536302.1}))
HSP 1 Score: 511.916 bits (1317), Expect = 4.141e-178
Identity = 284/474 (59.92%), Postives = 332/474 (70.04%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKFGVLK---SDTF-CYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSVSL--DLKSVENRVCVIQNGWVEIGNGVK------LNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPD---GGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFDSGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 459
MDPC FVRIV++NLALKF + SD+ C+CKIKL F TQ + + ++ +++ + ASF+L KS F+KL+EKS +++P C+K++I+ G +CG GK +GSVSL DLK E+R CV QNGWV IG K L+LNVR EPDPRFVFQFDGEPECSPQVFQ+NGN+RQ VFTC+F FRNSG +RNLR+RS SE + RS L+SL+ DKE H KERKGWSI IHDLSGSPVA ASMVTPFVPS GT+RV RSNPGAWLIL PG TWKPWGRLEAW E+GDHLGY+FE PD GGID ITL NS +STKNGGKF ID + G +P+S+PSSSFD G S D+GSGSWA LLY GFVMSST+ G G+CSKPEVE+ HVSCTEDAAAFVALAAA+DLSMDACR FS KLRKELRQ E
Sbjct: 1 MDPCTFVRIVIRNLALKFSAVHPPSSDSSPCFCKIKLNSFPTQIASLPLISRDDGHVPSLAAASFSLNKSQFDKLVEKSSTTRKPSCLKIDIYRGWRGDTCGLNCGKLLGSVSLPLDLKGAESRNCVFQNGWVSIGECEKGTSSAILHLNVRAEPDPRFVFQFDGEPECSPQVFQINGNIRQPVFTCKFSFRNSG-DRNLRSRSSLSEQSTPRSWLSSLKIDKEQHAKERKGWSIIIHDLSGSPVAAASMVTPFVPSPGTDRVSRSNPGAWLILRPGYGTWKPWGRLEAW---------------------------------------RERGDHLGYRFELLPDASTGGIDTITLANSTISTKNGGKFTIDINAGATPVSSPSSSFDFG--SGCDIGSGSWAQLLYEGFVMSSTLEGVGRCSKPEVEVGVQHVSCTEDAAAFVALAAAVDLSMDACRLFSHKLRKELRQQSQE 432
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7ET58 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g106690.3.1}))
HSP 1 Score: 469.544 bits (1207), Expect = 1.891e-161
Identity = 276/478 (57.74%), Postives = 321/478 (67.15%), Query Frame = 0
Match: A0A3Q7ET58 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g106690.3.1}))
HSP 1 Score: 469.544 bits (1207), Expect = 1.891e-161
Identity = 276/478 (57.74%), Postives = 321/478 (67.15%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKF-----GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQI-DDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSV--SLDLKSVEN---RVCVIQNGWVEIGNG--VKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFDSGSISSSDV------GSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 459
MDPCPFVRIV+ LALKF +L +++ CKIKLR + Q+S I +QE + I D++IH FN KS+ K +EKS V P C+K+EI+ GK + G+G + +GSV LDLKS+EN R VI NGWV +G G +LNLNVR EPDPRFVFQFDGEPECSPQVFQVNGNV+Q VFTC+F FRNSG +RNLR+RS SE + S SC S SD+EI KERKGWSIT+HDLSGSPVA ASMVTPFVPS G++RV +SNPG+WLIL PG TWKPWGRLEAW E+ LGY+FE PDG DAITL NS +STK GGK ID G +P+++P+SSFD S S S GSGSWA LLYRGFVMS TV G GKC+KPEVE+ HVSC EDAAAFVALAAAMDLS+DACRSFS KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGGLALKFPSESSKILPNNSTFDCKIKLRGCSAQSSTISAFVQEREVILDNRIHGCFNFSKSELVKFVEKSNVRGNPSCLKIEIYGGK--VGFGYGSKRLLGSVVVPLDLKSLENIGHRGFVIHNGWVSVGCGSTAELNLNVRAEPDPRFVFQFDGEPECSPQVFQVNGNVKQPVFTCKFSFRNSG-DRNLRSRSSLSEPSTSTSCFGSCTSDREISVKERKGWSITVHDLSGSPVAAASMVTPFVPSQGSDRVSKSNPGSWLILRPGDNTWKPWGRLEAW---------------------------------------RERNGELGYRFEIIPDGATDAITLVNSTISTKKGGKIGIDIINGATPLTSPNSSFDLSSGSGSGSDFGSQPGSGSWAQLLYRGFVMSGTVGGEGKCTKPEVEVGVQHVSCAEDAAAFVALAAAMDLSIDACRSFSQKLRKELRQQDQE 436
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0I7E5 ((Putative ovule protein {ECO:0000313|EMBL:JAP28468.1}))
HSP 1 Score: 466.077 bits (1198), Expect = 5.279e-160
Identity = 274/477 (57.44%), Postives = 322/477 (67.51%), Query Frame = 0
Match: A0A0V0I7E5 ((Putative ovule protein {ECO:0000313|EMBL:JAP28468.1}))
HSP 1 Score: 466.077 bits (1198), Expect = 5.279e-160
Identity = 274/477 (57.44%), Postives = 322/477 (67.51%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKF----GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQI-DDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSV--SLDLKSVEN---RVCVIQNGWVEIGNG--VKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD--SGSISSSDV----GSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 459
MDPCPFVRIV+ LALKF + + + CKIKLR + Q++ I +QE + I D++IH FN KS+ K +EKS V + C+K+EI+ GK + G+G + +GSV LDLKS+EN R VIQNGWV +G G +LNLNVR EPDPRFVFQFDGE ECSPQVFQVNGNV+Q VFTC+F FRNSG +RNLR+RS SE++ S SC SDKE KERKGWSIT+HDLSGSPVA ASMVTPFVPS G++RV +SNPG+WLIL PG TWKPWGRLEAW E+ LGY+FE PDG DAITL NS +STK GGK ID G +P+++P+SSFD SGS+S S+ GSGSW LLYRGFVMS+TV G GKCSKPEVE+ HVSC EDAAAFVALAAAMDLS+DACRSFS KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGGLALKFPSESKIPPNSSTFDCKIKLRGCSAQSTTIPAFVQEREAIVDNRIHGCFNFSKSELVKFVEKSNVRGKSSCLKIEIYGGK--VGFGYGSKRLLGSVVVPLDLKSLENIGHRGFVIQNGWVSVGGGSTAQLNLNVRAEPDPRFVFQFDGEAECSPQVFQVNGNVKQPVFTCKFSFRNSG-DRNLRSRSSLSETSTSTSCFGLCTSDKETSVKERKGWSITVHDLSGSPVAAASMVTPFVPSQGSDRVSKSNPGSWLILRPGDNTWKPWGRLEAW---------------------------------------RERNGELGYRFEIIPDGATDAITLVNSTISTKKGGKIGIDIINGATPLTSPNSSFDLSSGSVSGSEFGSQPGSGSWTQLLYRGFVMSATVGGEGKCSKPEVEVGVQHVSCAEDAAAFVALAAAMDLSIDACRSFSQKLRKELRQQDQE 435
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CCA2 ((Putative Formin-like protein 18 {ECO:0000313|EMBL:MPA77981.1}) (Fragment))
HSP 1 Score: 467.233 bits (1201), Expect = 6.148e-160
Identity = 280/479 (58.46%), Postives = 327/479 (68.27%), Query Frame = 0
Match: A0A5B7CCA2 ((Putative Formin-like protein 18 {ECO:0000313|EMBL:MPA77981.1}) (Fragment))
HSP 1 Score: 467.233 bits (1201), Expect = 6.148e-160
Identity = 280/479 (58.46%), Postives = 327/479 (68.27%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKF---------GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSVS--LDLKSVE-NRVCVIQNGWVEIG-----NGVKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHP-KERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPD---GGIDAITLTNSKLSTKNGGKFIIDNST-GPSPMSTPSSSFD--SGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQ 455
MDPCPFVRIV+ NLALKF G+ S + C+CKIKL +F +QT+ I ++ + + A FNL KS +KL+EKS S + C+K++I+ G+ CG GK +GS++ LDLK E ++ CVIQNGWV IG + +L+LNVR EPDPRFVFQFDG+PECSPQVFQVNGNVRQ VFTC+F FRNSG +RNLR+RS SE RS L+SL+ DKE P KERKGWSITIHDLSGSPVA ASMVTPFVPS GT+RV RSNPGAWLIL PG+ TWKPWGRLEAW E+ GDHLGY+F PD GG+D ITL +S LSTK GGKF ID ST SP+++ SSFD SGS S S++GSGSWA LLY GFVMSSTV G+CSKPEVE+ HVSCTEDAA FVALAAAMDLS+DACR FS KLRKELRQ
Sbjct: 37 MDPCPFVRIVIGNLALKFPVASKPAFSGIHSSSSPCFCKIKLNNFPSQTASIPLISHHDDHVPSLSAACFNLNKSQIDKLVEKS--SSKSHCLKIDIYTGRRGNICGLNSGKLLGSITVPLDLKGAEYSKGCVIQNGWVLIGESGKGSSAQLHLNVRAEPDPRFVFQFDGQPECSPQVFQVNGNVRQPVFTCKFSFRNSG-DRNLRSRSSLSEQRTPRSYLSSLKQDKEQRPVKERKGWSITIHDLSGSPVAAASMVTPFVPSPGTDRVSRSNPGAWLILRPGRGTWKPWGRLEAWSERSG-------------------------------------GDHLGYQFGLLPDADAGGVDTITLASSTLSTKKGGKFTIDISTDASSPVNSRKSSFDLWSGSGSGSEIGSGSWAQLLYEGFVMSSTV---GRCSKPEVEVGVQHVSCTEDAAVFVALAAAMDLSVDACRLFSEKLRKELRQ 472
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6ISZ8 ((Uncharacterized protein {ECO:0000313|EMBL:OIS98272.1}))
HSP 1 Score: 465.307 bits (1196), Expect = 1.234e-159
Identity = 276/478 (57.74%), Postives = 322/478 (67.36%), Query Frame = 0
Match: A0A1J6ISZ8 ((Uncharacterized protein {ECO:0000313|EMBL:OIS98272.1}))
HSP 1 Score: 465.307 bits (1196), Expect = 1.234e-159
Identity = 276/478 (57.74%), Postives = 322/478 (67.36%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKFGV---LKSDTFCYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGS---VSLDLKSVEN---RVCVIQNGWVEIG---NGVKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHP-KERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD------SGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 459
MDPCPFVRIV+ NLALKF L S T CK KLR F+TQ S I +Q+ +D++ H+ FNL K++ +KL+EKS + + +K+EIFA + I CG G K+ V LDLK +E+ R VIQN WV +G +L+LNV+ EPDPRFVFQFDGEPECSPQVFQVNGNV+Q VFTC+F FR S G+RNLR+RS SE N S SC S DKE P KERKGWSITIHDLSGSP+A ASM+TPFVPS G+N V RSNPGAWLIL P TWKPWGRLEAW E+G GD LGY+FE PDG DAITL+NS +STKNGGKF +D + G +P+++P+SSFD SGS S GSGSWA LLYRGFVMSSTV G GKCSKPEV + HV+C EDAAAFVALAAAMDLSMDAC+SF+ KLRKELRQ HE
Sbjct: 1 MDPCPFVRIVIGNLALKFPAEHKLSSSTVFDCKFKLRGFSTQVSTISAFVQD-PVLDNRTHSCFNLNKTELDKLVEKSSIRGKTCSLKIEIFARRKGIGCGLLNGGKLLGSVVVPLDLKGLESNGRRGVVIQNEWVLVGGSSTAAQLHLNVKAEPDPRFVFQFDGEPECSPQVFQVNGNVKQPVFTCKFSFR-SNGDRNLRSRSSLSEPNTSTSCFNSCPVDKESSPLKERKGWSITIHDLSGSPIAAASMITPFVPSQGSNNVSRSNPGAWLILRPSNGTWKPWGRLEAWRERG--------------------------------------GD-LGYRFEIIPDGATDAITLSNSTISTKNGGKFSVDITNGATPLTSPNSSFDLCSGSGSGSDFGSAPGSGSWAQLLYRGFVMSSTVEGDGKCSKPEVVVGVQHVNCVEDAAAFVALAAAMDLSMDACQSFTKKLRKELRQSDHE 437
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2CJ69 ((Uncharacterized protein {ECO:0000313|EMBL:TMX04962.1}) (Fragment))
HSP 1 Score: 464.537 bits (1194), Expect = 2.121e-159
Identity = 274/477 (57.44%), Postives = 319/477 (66.88%), Query Frame = 0
Match: A0A6N2CJ69 ((Uncharacterized protein {ECO:0000313|EMBL:TMX04962.1}) (Fragment))
HSP 1 Score: 464.537 bits (1194), Expect = 2.121e-159
Identity = 274/477 (57.44%), Postives = 319/477 (66.88%), Query Frame = 0
Query: 2 DPCPFVRIVVKNLALKF-----GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQI-DDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSV--SLDLKSVEN---RVCVIQNGWVEIGNG--VKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFDSGSISSSDV------GSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 459
DPCPFVRIV+ LALKF +L +++ CKIKLR Q++ I +QE + I D++IH FN KS+ K +EKS V P C+K+EI+ GK + G+G + +GSV LDLKS+EN R VI +GWV +G G +LNLNVR EPDPRFVFQFDGEPECSPQVFQVNGNV+Q VFTC+F FRNSG +RNLR+RS SE + S SC S SDKEI KERKGWSIT+HDLSGSPVA ASMVTPFVPS G++RV +SNPG+WLIL PG TWKPWGRLEAW E+ LGY+FE PDG DAITL NS +STK GGK ID G +P+++P+SSFD S S S GSGSWA LLYRGFVMS TV G GKC+KPEVE+ HVSC EDAAAFVALAAAMDLS+DACRSFS KLRKELRQ E
Sbjct: 1 DPCPFVRIVIGGLALKFPSESSKILPNNSTFDCKIKLRGCLAQSTTISAFVQEREVIVDNRIHGCFNFSKSELVKFVEKSNVRGNPSCLKIEIYGGK--VGFGYGSKRLLGSVVVPLDLKSLENIGHRGFVIHSGWVSVGCGSTAELNLNVRAEPDPRFVFQFDGEPECSPQVFQVNGNVKQPVFTCKFSFRNSG-DRNLRSRSSLSEPSTSTSCFGSCTSDKEISVKERKGWSITVHDLSGSPVAAASMVTPFVPSQGSDRVSKSNPGSWLILRPGDNTWKPWGRLEAW---------------------------------------RERNGELGYRFEIIPDGATDAITLVNSTISTKKGGKIGIDIINGATPLTSPNSSFDLSSGSGSGSDFGSQPGSGSWAQLLYRGFVMSGTVGGEGKCTKPEVEVGVQHVSCAEDAAAFVALAAAMDLSIDACRSFSQKLRKELRQQDQE 435
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1A2C9 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400013135}))
HSP 1 Score: 464.151 bits (1193), Expect = 2.323e-159
Identity = 275/477 (57.65%), Postives = 323/477 (67.71%), Query Frame = 0
Match: M1A2C9 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400013135}))
HSP 1 Score: 464.151 bits (1193), Expect = 2.323e-159
Identity = 275/477 (57.65%), Postives = 323/477 (67.71%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKF----GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQI-DDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSV--SLDLKSVEN---RVCVIQNGWVEIGNG--VKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD--SGSISSSDV----GSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 459
MDPCPFVRIV+ LALKF + + + CKIKLR + Q++ I +QE + I D++IH FN KS+ K +EK S C+K+EI+ GK + G+G + +GSV LDLKS+EN R VIQNGWV +G G +LNLNVR EPDPRFVFQFDGE ECSPQVFQVNGNV+Q VFTC+F FRNSG +RNLR+RS SE++ S SC S SDKEI KERKGWSIT+HDLSGSPVA ASMVTPFVPS G++RV +SNPG+WLIL PG TWKPWGRLEAW E+ LGY+FE PDG DAITL NS +STK GGK ID G +P+++P+SSFD SGS+S S+ GSGSWA +LYRGFVMS+TV G GKCSKPEVE+ HVSC EDAAAFVALAAAMDLS+DACRSFS KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGGLALKFPSESKIPPNSSTFDCKIKLRGCSAQSTTIPAFVQEREAIVDNRIHGCFNFSKSELVKFVEKGKSS----CLKIEIYGGK--VGFGYGSKRLLGSVVVPLDLKSLENIGHRGFVIQNGWVSVGGGSTAQLNLNVRAEPDPRFVFQFDGEAECSPQVFQVNGNVKQPVFTCKFSFRNSG-DRNLRSRSSLSETSTSTSCFGSCTSDKEISVKERKGWSITVHDLSGSPVAAASMVTPFVPSQGSDRVSKSNPGSWLILRPGDNTWKPWGRLEAW---------------------------------------RERNGELGYRFEIIPDGATDAITLVNSTISTKKGGKIGIDIINGATPLTSPNSSFDLSSGSVSGSEFGSQPGSGSWAQMLYRGFVMSATVGGEGKCSKPEVEVGVQHVSCAEDAAAFVALAAAMDLSIDACRSFSQKLRKELRQQDQE 431
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TWJ7 ((uncharacterized protein LOC105169457 {ECO:0000313|RefSeq:XP_011088149.1}))
HSP 1 Score: 462.996 bits (1190), Expect = 6.704e-159
Identity = 278/475 (58.53%), Postives = 316/475 (66.53%), Query Frame = 0
Match: A0A6I9TWJ7 ((uncharacterized protein LOC105169457 {ECO:0000313|RefSeq:XP_011088149.1}))
HSP 1 Score: 462.996 bits (1190), Expect = 6.704e-159
Identity = 278/475 (58.53%), Postives = 316/475 (66.53%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKF--GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIF--AGKGEISCGFGGGKKIGSVSLDLKSV-----ENRVCVIQNGWVEIG-NGVKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPS------SSFDSGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 459
MDPCPFVRIV+ NLAL F S YCK KL+ F Q S + + E+ +D +IH F + +++ E+L EKS + +K+EI + +G C V LDLKS+ +R C IQNGWV IG + VKL+LNVR EPDPRFVF+FDGEPECSPQVFQVNGNV+Q VFTC+F FRNSG ER LR+RS SE + S SC +S +D E KERKGWSITIHDLSGSPVA ASMVTPFVPS GTNRV RSNPGAWLIL PG TWKPWGRLEAW E RSN GDHLGY+F+ PDGGID I L NS +STK GGKF ID +TGP+PM++P+ S SGS S GSGSWAHLLYRGFVMSSTV G GKCSKP+VE+ HVSCTEDAAAFVALAAAMDLSMDACRSFS KLRKELRQP E
Sbjct: 1 MDPCPFVRIVIGNLALMFPDKTRFSTLSFYCKFKLKGFPAQVSDVPFLASESDAVDSRIHGCFAMGRAELERLAEKS---SKFSSLKIEIHRRSSRGNSGCVV--------VQLDLKSILENNGNSRACAIQNGWVWIGGSDVKLHLNVRAEPDPRFVFRFDGEPECSPQVFQVNGNVKQPVFTCKFSFRNSG-ERTLRSRSSLSEPSTSTSCFSSGAADNEQPLKERKGWSITIHDLSGSPVAAASMVTPFVPSPGTNRVSRSNPGAWLILRPGHGTWKPWGRLEAWRE-----------RSN--------------------------GDHLGYRFDLIPDGGIDTIPLANSSISTKTGGKFSIDITTGPTPMTSPNSSFDLSSGSGSGSDLGSTSGSGSWAHLLYRGFVMSSTVEGDGKCSKPDVEVGVQHVSCTEDAAAFVALAAAMDLSMDACRSFSQKLRKELRQPDLE 426
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YGZ1 ((uncharacterized protein LOC104246980 {ECO:0000313|RefSeq:XP_009801206.1}))
HSP 1 Score: 462.611 bits (1189), Expect = 1.227e-158
Identity = 276/476 (57.98%), Postives = 324/476 (68.07%), Query Frame = 0
Match: A0A1U7YGZ1 ((uncharacterized protein LOC104246980 {ECO:0000313|RefSeq:XP_009801206.1}))
HSP 1 Score: 462.611 bits (1189), Expect = 1.227e-158
Identity = 276/476 (57.98%), Postives = 324/476 (68.07%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKFGV---LKSDTFCYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFA-GKGEISCGFGGGKKIGSVSLDLKSVEN---RVCVIQNGWVEIG---NGVKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHP-KERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD------SGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 459
MDPCPFVRIV+ NLALKF L S T CK KLR F+TQ S I +Q+ +D++ H+ FNL K++ +KL+EKS + +K+EIFA KG GGK +GSV +DLK +E+ R VIQN WV +G +L+LNV+ EPDPRFVFQFDGEPECSPQVFQVNGNV+Q VFTC+F FRN+G +RNLR+RS S+ + S SC S SDKE P KERKGWSITIHDLSGSP+A ASMVTPFVPS G++ V RSNPGAWLIL PG TWKPWGRLEAW E+G GD LGY+FE PDG DAITL+NS +STKNGGKF +D + G +P+++P+SSFD SGS S GSGSWA LLYRGFVMSSTV G GKCSKPEV + HV+C EDAAAFVALAAAMDLSMDAC+SF+ KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGNLALKFPAEHKLSSSTVFDCKFKLRGFSTQVSTISAFVQD-PILDNRTHSCFNLNKTELDKLVEKSTAKGKTCSLKIEIFARKKGIGCGLLNGGKLLGSVIVDLKGLESDGRRGVVIQNEWVLVGGSSTAAQLHLNVKAEPDPRFVFQFDGEPECSPQVFQVNGNVKQPVFTCKFSFRNNG-DRNLRSRSSLSKPSTSTSCFNSCTSDKESSPLKERKGWSITIHDLSGSPIAAASMVTPFVPSQGSSNVSRSNPGAWLILRPGNGTWKPWGRLEAWQERG--------------------------------------GD-LGYRFEIIPDGATDAITLSNSTISTKNGGKFGVDITNGATPLTSPNSSFDLCSGSGSGSDFGSAPGSGSWAQLLYRGFVMSSTVEGEGKCSKPEVVVGVQHVNCVEDAAAFVALAAAMDLSMDACQSFTKKLRKELRQSDQE 435
BLAST of DCAR_021932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Z7N9 ((uncharacterized protein LOC107783718 {ECO:0000313|RefSeq:XP_016460222.1}))
HSP 1 Score: 462.611 bits (1189), Expect = 1.227e-158
Identity = 276/476 (57.98%), Postives = 324/476 (68.07%), Query Frame = 0
Match: A0A1S3Z7N9 ((uncharacterized protein LOC107783718 {ECO:0000313|RefSeq:XP_016460222.1}))
HSP 1 Score: 462.611 bits (1189), Expect = 1.227e-158
Identity = 276/476 (57.98%), Postives = 324/476 (68.07%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKFGV---LKSDTFCYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFA-GKGEISCGFGGGKKIGSVSLDLKSVEN---RVCVIQNGWVEIG---NGVKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHP-KERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGXSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD------SGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 459
MDPCPFVRIV+ NLALKF L S T CK KLR F+TQ S I +Q+ +D++ H+ FNL K++ +KL+EKS + +K+EIFA KG GGK +GSV +DLK +E+ R VIQN WV +G +L+LNV+ EPDPRFVFQFDGEPECSPQVFQVNGNV+Q VFTC+F FRN+G +RNLR+RS S+ + S SC S SDKE P KERKGWSITIHDLSGSP+A ASMVTPFVPS G++ V RSNPGAWLIL PG TWKPWGRLEAW E+G GD LGY+FE PDG DAITL+NS +STKNGGKF +D + G +P+++P+SSFD SGS S GSGSWA LLYRGFVMSSTV G GKCSKPEV + HV+C EDAAAFVALAAAMDLSMDAC+SF+ KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGNLALKFPAEHKLSSSTVFDCKFKLRGFSTQVSTISAFVQD-PILDNRTHSCFNLNKTELDKLVEKSTAKGKTCSLKIEIFARKKGIGCGLLNGGKLLGSVIVDLKGLESDGRRGVVIQNEWVLVGGSSTAAQLHLNVKAEPDPRFVFQFDGEPECSPQVFQVNGNVKQPVFTCKFSFRNNG-DRNLRSRSSLSKPSTSTSCFNSCTSDKESSPLKERKGWSITIHDLSGSPIAAASMVTPFVPSQGSSNVSRSNPGAWLILRPGNGTWKPWGRLEAWQERG--------------------------------------GD-LGYRFEIIPDGATDAITLSNSTISTKNGGKFGVDITNGATPLTSPNSSFDLCSGSGSGSDFGSAPGSGSWAQLLYRGFVMSSTVEGEGKCSKPEVVVGVQHVNCVEDAAAFVALAAAMDLSMDACQSFTKKLRKELRQSDQE 435
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5B378 | E-Value: 4.141e-178, PID: 59.92 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more] |
| A0A3Q7ET58 | E-Value: 1.891e-161, PID: 57.74 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A0V0I7E5 | E-Value: 5.279e-160, PID: 57.44 | (Putative ovule protein {ECO:0000313|EMBL:JAP28468... [more] |
| A0A5B7CCA2 | E-Value: 6.148e-160, PID: 58.46 | (Putative Formin-like protein 18 {ECO:0000313|EMBL... [more] |
| A0A1J6ISZ8 | E-Value: 1.234e-159, PID: 57.74 | (Uncharacterized protein {ECO:0000313|EMBL:OIS9827... [more] |
| A0A6N2CJ69 | E-Value: 2.121e-159, PID: 57.44 | (Uncharacterized protein {ECO:0000313|EMBL:TMX0496... [more] |
| M1A2C9 | E-Value: 2.323e-159, PID: 57.65 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A6I9TWJ7 | E-Value: 6.704e-159, PID: 58.53 | (uncharacterized protein LOC105169457 {ECO:0000313... [more] |
| A0A1U7YGZ1 | E-Value: 1.227e-158, PID: 57.98 | (uncharacterized protein LOC104246980 {ECO:0000313... [more] |
| A0A1S3Z7N9 | E-Value: 1.227e-158, PID: 57.98 | (uncharacterized protein LOC107783718 {ECO:0000313... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |