DCAR_020738

Resource Type: 
Polypeptide
Name: 
DCAR_020738
Identifier: 
DCAR_020738.mRNA-protein
Sequence: 
MALVTCFNTILFLVFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRT
GYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDL
INWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQ
VQNFAVPANYSDPYLREWIKPDNNPIVRARSENSSSFRDPTTAWFDGVHW
KILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVA
PKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTS
VDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAG
IQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMGSQVLNMGEHIEVKG
VTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPF
GFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPF
AGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAH
LFVFNNGTEAITIDSLDAWSMKAPSLMNNN*
Sequence Length: 
581
Sequence Checksum: 
3b8ae87463b63e469118764c3e0be928
View location in JBrowse: 
DCARv2_Chr6:28751059..28753544+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_020738, derives from mRNA, DCAR_020738.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q39692 (Beta-fructofuranosidase, insoluble isoenzyme 2 (3.2.1.26) (Cell wall beta-fructosidase 2) (Invertase 2) (Sucrose hydrolase 2) (Precursor))

HSP 1 Score: 1187.94 bits (3072), Expect = 0.000e+0
Identity = 572/583 (98.11%), Postives = 577/583 (98.97%), Query Frame = 0
 
Query:    1 MALVTCFNTILFL---VFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIVRARSENSSSFRDPTTAWFDGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMGSQVLNMGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHLFVFNNGTEAITIDSLDAWSMKAPSLMNNN 580
            MALVTCF+++LFL   VFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIVRARSENSSSFRDPTTAWFDGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWEC DFYPVAPKGMNGLDTSVTGQDIKHVLKVSL STRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQN+HMGSQVLN GEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAH+FVFNNGTEAITIDSLDAWSMKAPSLMNNN
Sbjct:   10 MALVTCFHSMLFLSAVVFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIVRARSENSSSFRDPTTAWFDGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECLDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLYSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNVHMGSQVLNTGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHVFVFNNGTEAITIDSLDAWSMKAPSLMNNN 592
[Close]
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q39693 (Beta-fructofuranosidase, insoluble isoenzyme 3 (3.2.1.26) (Cell wall beta-fructosidase 3) (Invertase 3) (Sucrose hydrolase 3) (Precursor))

HSP 1 Score: 942.954 bits (2436), Expect = 0.000e+0
Identity = 439/565 (77.70%), Postives = 505/565 (89.38%), Query Frame = 0
 
Query:   15 FIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIVRARSENSSSFRDPTTAWFDGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMGSQVLNMGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKD-KLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHLFVFNNGTEAITIDSLDAWSMKAPSLMN 578
            FIF   +NI GV+++H+VFPELQS+SAV+V+LVHRTGYHFQP+KHWINDPNGPM+YKG+YHLFYQYNPKG+VWGNIVWAHS+SKDLINW+ALEPAIFPSKPFD+YGCWSGSAT+LPG KPVI+YTGIV+P P N QVQN+AVPANYSDP+LREW+KPDNNP+V   +EN S+FRDPTTAWFDG HWK+LVGS RKHRGIAYLYRS++F KW ++ HP+H+K  TGMWECPDFYPV+P+  +GLD S  G+ IKHVLKVSL+STRYEYYT+G Y+R  D YVPDNTSVDGWAGLRYDYGNFYASKTF+DP K+RRILWGWANESDS+ DDVQKGWAGIQLIPR++WLDP+G+QL+QWPIEE++ LRG  +HM +Q L+MG H+EV G+TAAQADVDATFSFKSLD+AE FDP W  LDA DVCD MGST++GGLGPFG LTLAS+ LEEYTPVFFR+FK +D KLKVLMCSDAKRSS  AEGLYKP F G+VDVDLSDKKISLRSLIDNSVVESFGA  +  I+SRVYP +AIYNNAHLFVFNNGTE IT+D+LDAWSM +PS MN
Sbjct:   23 FIF---LNINGVDSTHRVFPELQSISAVDVKLVHRTGYHFQPQKHWINDPNGPMFYKGYYHLFYQYNPKGSVWGNIVWAHSVSKDLINWIALEPAIFPSKPFDQYGCWSGSATILPGNKPVILYTGIVSPDPENAQVQNYAVPANYSDPFLREWVKPDNNPLVGVHTENPSAFRDPTTAWFDGGHWKMLVGSSRKHRGIAYLYRSKDFKKWKRSPHPIHTKAETGMWECPDFYPVSPRSEDGLDNSKMGRGIKHVLKVSLNSTRYEYYTIGRYNRVRDFYVPDNTSVDGWAGLRYDYGNFYASKTFYDPIKKRRILWGWANESDSQIDDVQKGWAGIQLIPRRIWLDPSGRQLVQWPIEEVEGLRGSELHMRNQKLDMGVHVEVTGITAAQADVDATFSFKSLDKAESFDPEWINLDAQDVCDSMGSTIQGGLGPFGLLTLASKDLEEYTPVFFRIFKAEDQKLKVLMCSDAKRSS-LAEGLYKPSFRGFVDVDLSDKKISLRSLIDNSVVESFGAQRKNLISSRVYPTLAIYNNAHLFVFNNGTEPITVDNLDAWSMNSPSEMN 583
[Close]
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: P26792 (Beta-fructofuranosidase, insoluble isoenzyme 1 (3.2.1.26) (Cell wall beta-fructosidase 1) (Invertase 1) (Sucrose hydrolase 1) (Precursor))

HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 417/576 (72.40%), Postives = 482/576 (83.68%), Query Frame = 0
 
Query:    7 FNTILFLVFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIVRARS-ENSSSFRDPTTAWFDGV-HWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMG-SQVLNMGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDL-SDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHLFVFNNGTEAITIDSLDAWSMKAPSLMN 578
              ++L ++ + +  ++I GVEA H++   LQSV A NV+ VHRTGYHFQPK++WINDPNGPMYYKG YHLFYQYNPKGAVWGNIVWAHS+S DLINW  LEPAIFPSKPFDKYGC SGSAT+LPG KPVI+YTGIV   P N QVQN+A+PAN SDPYLR+WIKPDNNP+V A + EN+++FRDPTTAW D   HWK+LVGS+R  RGIAYLYRS++F+KWTKAKHP+HS+  TGMWECPDF+PV+ KG+NGLDTSVTG+ +KHVLKVSLD TRYEYYTVG Y  D D Y+PDNTSVDGWAGLRYDYGNFYASKTFFDP K RRILWGWANESDS   DV KGWAGIQLIPR LWLDP+GKQL+QWPIEE++ LRG  +     Q L+ G  +EVKG+TAAQADV+ TFSFKSL + E FDP W + DA  +C   GSTV+GG+GPFG LTLASEKLEEYTPVFFRVFK ++  KVLMCSDA RSS   EGLY+P FAG+VDVDL +DKKISLRSLIDNSVVESFGA G+TCI+SRVYP +A+Y NAHL+VFNNG+E IT+++LDAWSMK P  MN
Sbjct:   18 LQSLLAILLVTTTTLHINGVEAFHEIHYNLQSVGAENVKQVHRTGYHFQPKQNWINDPNGPMYYKGVYHLFYQYNPKGAVWGNIVWAHSVSTDLINWTPLEPAIFPSKPFDKYGCRSGSATILPGNKPVILYTGIVEGPPKNVQVQNYAIPANLSDPYLRKWIKPDNNPLVVANNGENATAFRDPTTAWLDKSGHWKMLVGSKRNRRGIAYLYRSKDFIKWTKAKHPIHSQANTGMWECPDFFPVSLKGLNGLDTSVTGESVKHVLKVSLDLTRYEYYTVGTYLTDKDRYIPDNTSVDGWAGLRYDYGNFYASKTFFDPSKNRRILWGWANESDSTAHDVAKGWAGIQLIPRTLWLDPSGKQLMQWPIEELETLRGSKVKFSRKQDLSKGILVEVKGITAAQADVEVTFSFKSLAKREPFDPKWLEYDAEKICSLKGSTVQGGVGPFGLLTLASEKLEEYTPVFFRVFKAQNTHKVLMCSDATRSS-LKEGLYRPSFAGFVDVDLATDKKISLRSLIDNSVVESFGAKGKTCISSRVYPTLAVYENAHLYVFNNGSETITVENLDAWSMKKPLRMN 592
[Close]
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B5E7 ((Putative beta-fructofuranosidase, insoluble isoenzyme 1-like {ECO:0000313|EMBL:MPA62573.1}) (3.2.1.26 {ECO:0000313|EMBL:MPA62573.1}))

HSP 1 Score: 851.662 bits (2199), Expect = 0.000e+0
Identity = 409/576 (71.01%), Postives = 484/576 (84.03%), Query Frame = 0
 
Query:    4 VTCFNTILFLVFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIVRARSE-NSSSFRDPTTAWF--DGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMGSQVLNMGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHLFVFNNGTEAITIDSLDAWSMKAPSL 576
            V+ F   L ++  +SL +N  GVEA+H+V+  LQSV AV V+ +HRTG+HFQP+KHWINDPNGP++YKG YHLFYQYNPKGAVWGNIVWAHS+S D+INW  LE AI+PSKPFD +GCWSGSAT+LPG KP+I+YTGI+  +  NTQVQN+AVPANYSD YLREWIKPDNNP+V A +  N ++FRDPTTAW+  DG HW++LVGSRRK RGIAYLY SR+FLKWTKAKHP+HS   TGMWECPDF+PV+  G NGLDTSV G +IKHVLKVSLD TRYEYYT+G YD + D YVPDNTSVDGW+GLRYDYGNFYASKTFFD  K RRILWGWANESD+  +DV KGWAGIQ IPRK+WLD +GKQL+QWPIEE+  LRGQ + + +Q LN+G+H+E+KG+TAAQADV+ TFSF SLD+AE FDP+W  ++A D+C   GSTV+GG+GPFG LTLASEKLEEYTPVFFRVFK  DK  VLMCSDA  SS+  EGLYKP FAG+V+VDL+D+K+SLRSLID+SVVESFGA G TCITSRVYP +A+ N+AHL+ FNNGTEAITID+L AW+M  P +
Sbjct:    3 VSKFLWALPVLLFYSLLLN-NGVEATHKVYMHLQSVRAVKVKQLHRTGFHFQPRKHWINDPNGPLFYKGVYHLFYQYNPKGAVWGNIVWAHSVSTDMINWKKLEAAIYPSKPFDNFGCWSGSATILPGDKPIILYTGIIDKN--NTQVQNYAVPANYSDHYLREWIKPDNNPVVVADAGVNKTAFRDPTTAWYGKDG-HWRMLVGSRRKDRGIAYLYMSRDFLKWTKAKHPIHSSAGTGMWECPDFFPVSVDGENGLDTSVIGGNIKHVLKVSLDLTRYEYYTLGTYDPERDRYVPDNTSVDGWSGLRYDYGNFYASKTFFDAGKGRRILWGWANESDTANEDVAKGWAGIQAIPRKVWLDSSGKQLLQWPIEELDTLRGQKVELSNQKLNLGDHVEIKGITAAQADVEVTFSFSSLDKAEPFDPSW--VNAQDLCGQKGSTVQGGVGPFGLLTLASEKLEEYTPVFFRVFKATDKHVVLMCSDAT-SSSLKEGLYKPSFAGFVNVDLTDRKLSLRSLIDHSVVESFGAGGNTCITSRVYPTVAVLNDAHLYAFNNGTEAITIDNLTAWNMDNPEM 571
[Close]
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZKR3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8518559.1}))

HSP 1 Score: 849.736 bits (2194), Expect = 0.000e+0
Identity = 400/569 (70.30%), Postives = 480/569 (84.36%), Query Frame = 0
 
Query:   11 LFLVFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIVRARSE-NSSSFRDPTTAWF--DGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMGSQVLNMGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHLFVFNNGTEAITIDSLDAWSMKAPSL 576
            L ++  +SL +   GVE +H+VF  LQ+V AV V+ +HRTG+HFQPKKHWINDPNGP+ YKG YHLFYQYNPKGAVWGNIVWAHS+S D+INW  LEPAI+PSKPFD +GCWSGSAT+LP  KP+I+YTGIV    +NTQVQN+AVP NYSDPYLREWIKPDNNP+V A  E N ++FRDPTTAW+  DG  W++LVGSRR+  GIAYLY+S++F+KWTK +HP+HS + TGMWECPDFYPV+ +G NGLDTS+ G++IKHVLKVSLD+TR+EYYT+G+Y  + DIYVPDN S+D W GLRYDYGNFYASKTFFD  KQRRILWGWANESD+  +DV KGWAGIQ IPRK+WLD +GKQL+QWPI E+++LRGQ + + +Q LN+G+H+E+KG+TAAQADV+ +FSF SLD+AE FDP+W   +A D+C   GSTV+GG+GPFG LTLASEKLEEYTPVFFRVFK  DK KVLMCSDA  SS    GLYKP FAG+VDVDL+DKK+SLRSLID+SVVESFGA G+TCITSRVYP +A++NN HL+ FNNGTEAITI SL AWSMK+P +
Sbjct:   10 LTVLSFYSLLLLNNGVEGTHKVFTHLQNVRAVEVKQLHRTGFHFQPKKHWINDPNGPLVYKGVYHLFYQYNPKGAVWGNIVWAHSVSTDMINWKKLEPAIYPSKPFDNFGCWSGSATILPDDKPIILYTGIV--DQINTQVQNYAVPKNYSDPYLREWIKPDNNPVVVAGPEVNKTAFRDPTTAWYGKDG-QWRMLVGSRRRDIGIAYLYKSKDFMKWTKVQHPIHSVEGTGMWECPDFYPVSLRGENGLDTSIIGKNIKHVLKVSLDATRFEYYTIGKYYPEKDIYVPDNKSMDNWNGLRYDYGNFYASKTFFDSGKQRRILWGWANESDTANEDVAKGWAGIQAIPRKVWLDTSGKQLLQWPIAELEILRGQKVELSNQKLNLGDHVEIKGITAAQADVEVSFSFSSLDKAEPFDPSWK--NAQDLCSQKGSTVQGGVGPFGLLTLASEKLEEYTPVFFRVFKATDKHKVLMCSDASSSSLKG-GLYKPSFAGFVDVDLADKKLSLRSLIDHSVVESFGAGGKTCITSRVYPTVAVWNNTHLYAFNNGTEAITIASLTAWSMKSPEM 572
[Close]
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B0LUL1 ((Cell-wall invertase {ECO:0000313|EMBL:ABY81288.1}) (3.2.1.26 {ECO:0000313|EMBL:ABY81288.1}))

HSP 1 Score: 848.966 bits (2192), Expect = 0.000e+0
Identity = 406/576 (70.49%), Postives = 471/576 (81.77%), Query Frame = 0
 
Query:    2 ALVTCFNTILFLVFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIVRAR-SENSSSFRDPTTAWFDGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMGSQVLNMGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHLFVFNNGTEAITIDSLDAWSMKAPSL 576
            AL+     +     +F L  N  GVEASH+++   QS+S   V+ +HRTGYHFQP K+WINDPNGP+YYKG YHLFYQYNPKGAVWGNIVWAHS+SKDLINW +LEPAI+PSK FD YGCWSGSAT+LP G+PVI YTGIV  +  N Q+QN+AVPAN SDPYLREW+KPD+NPIV    S N+S+FRDPTTAW  G HW+IL+GS+++ RGIAYLYRS +F KW KAKHPLHS   TGMWECPDF+PV+  G  GLDTSV G +++HVLKVSLD TRYEYYT+G YD   D Y PD   VDGWAGLRYDYGNFYASKTFFDP K RRILWGWANESDS Q D+ KGWAGIQLIPR++WLDP+GKQL+QWP+ E++ LR  N+ + +Q L  G H+EVKG+TAAQADVD TFSF SLD+AE FDP WAKLDALDVC   GS  +GGLGPFG LTLASEKLEE+TPVFFRVFK  DK KVL+CSDA RSS+  EGLYKPPFAG+VDVDL+DKK++LRSLID+SVVESFGA GRT ITSRVYP IA++  AHLFVFNNG+E +T++SLDAWSMK P +
Sbjct:    8 ALLKFLPVLPLFALLFVLSNN--GVEASHKIYLRYQSLSVDKVKQIHRTGYHFQPPKNWINDPNGPLYYKGLYHLFYQYNPKGAVWGNIVWAHSVSKDLINWESLEPAIYPSKWFDNYGCWSGSATILPNGEPVIFYTGIVDGN--NRQIQNYAVPANSSDPYLREWVKPDDNPIVYPDPSVNASAFRDPTTAWRVGGHWRILIGSKKRDRGIAYLYRSLDFKKWFKAKHPLHSVQGTGMWECPDFFPVSLSGEEGLDTSVGGSNVRHVLKVSLDLTRYEYYTIGTYDEKKDRYYPDEALVDGWAGLRYDYGNFYASKTFFDPSKNRRILWGWANESDSVQQDMNKGWAGIQLIPRRVWLDPSGKQLLQWPVAELEKLRSHNVQLRNQKLYQGYHVEVKGITAAQADVDVTFSFPSLDKAEPFDPKWAKLDALDVCAQKGSKAQGGLGPFGLLTLASEKLEEFTPVFFRVFKAADKHKVLLCSDA-RSSSLGEGLYKPPFAGFVDVDLTDKKLTLRSLIDHSVVESFGAGGRTVITSRVYPIIAVFEKAHLFVFNNGSETVTVESLDAWSMKMPVM 578
[Close]
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A248XBH5 ((Beta-fructofuranosidase, insoluble isoenzyme CWINV2 {ECO:0000313|EMBL:ASW25864.1}))

HSP 1 Score: 848.581 bits (2191), Expect = 0.000e+0
Identity = 406/572 (70.98%), Postives = 475/572 (83.04%), Query Frame = 0
 
Query:   11 LFLVFIFSL-DVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNP-IVRARSENSSSFRDPTTAWF--DGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMGSQVLNMGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHLFVFNNGTEAITIDSLDAWSMKAPSLMN 578
            +F +F+  L  ++  GV ASH+VFPELQS+SAV V+ VHRT YHFQP KHWINDPNGPMYY G YH FYQYNPKGAVWGNIVWAHS+SKDLINWVA+EPAI+PSKPFD  GCWSGSAT+LPG KPVI+YTGI    P   QVQN+AVP+N SDPYLR+W KPDNNP +V     N+S+FRDPTTAW   DG HW+ILVG +RK RG+A+LYRSR+F+ W KAKHPLHS   TGMWECPDFYPV+  G +GLDTSV GQ++KHVLKVSLD TRYEYYTVG Y R+ D YVPDNTS DGW+GLRYDYGNFYASKTFFD  K RRILWGWANESD++ DDV+KGWAGIQ IPR +WLD +GKQL+QWPI+E++ LRG+N+ + ++VL  GE++EVKG+TAAQADVD TFS +SLD+AE FDP W   DA +VC  MG+ V+G +GPFG LTLAS+KLEEYTPVFFR+FK  +K  VLMCSDA RSS+   GLYKPPFAG+VDVDLSDKK+SLRSLID+SVVESFGA G+TCITSRVYP +A+Y  AHL  FNNGTE +T+++L+AWSMK P  MN
Sbjct:    9 VFAIFVTCLCAISNNGVHASHKVFPELQSLSAVKVRHVHRTCYHFQPPKHWINDPNGPMYYNGIYHFFYQYNPKGAVWGNIVWAHSVSKDLINWVAMEPAIYPSKPFDINGCWSGSATILPGNKPVILYTGI---DPQQRQVQNYAVPSNLSDPYLRKWTKPDNNPLVVPDHGINASAFRDPTTAWLGSDG-HWRILVGGKRKRRGMAFLYRSRDFVNWVKAKHPLHSSPNTGMWECPDFYPVSVTGKSGLDTSVMGQNVKHVLKVSLDVTRYEYYTVGRYVRNEDRYVPDNTSADGWSGLRYDYGNFYASKTFFDAAKNRRILWGWANESDTRLDDVEKGWAGIQAIPRMVWLDDSGKQLLQWPIKELETLRGKNVRLRNKVLKSGENVEVKGITAAQADVDVTFSLQSLDKAEKFDPTWT--DAQEVCSKMGTQVKGRVGPFGLLTLASKKLEEYTPVFFRIFKAPNKHVVLMCSDA-RSSSLEGGLYKPPFAGFVDVDLSDKKLSLRSLIDHSVVESFGAGGKTCITSRVYPTLAVYEGAHLLAFNNGTETVTVENLNAWSMKKPVEMN 573
[Close]
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9SWG8 ((Beta-fructofuranosidase, insoluble isoenzyme 3, putative {ECO:0000313|EMBL:EEF32053.1}) (3.2.1.26 {ECO:0000313|EMBL:EEF32053.1}))

HSP 1 Score: 847.81 bits (2189), Expect = 0.000e+0
Identity = 402/580 (69.31%), Postives = 473/580 (81.55%), Query Frame = 0
 
Query:    1 MALVTCFNTILFLVFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIVRARSE-NSSSFRDPTTAWFDGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMGSQVLNMGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHLFVFNNGTEAITIDSLDAWSMKAPSLMNN 579
            M  V  F + + + F+F    +   VE SH+++PE QS+ A NV+LVHRTG+HFQP KHWINDPNGPMYY G YHLFYQYNPKGAVWGNIVWAHS+SKDLINW ALEPAI+PS+ FD  GCWSGSAT+LPG KPVI+YTGI    P   Q+QN+A+P N SDPYLREW+KP +NP+V   S+ N+S+FRDPTTAW+   HW+ILVGS+RKHRGIAYLYRS+NF KW KA+HPLHSK +TGMWECPDF+PV+  G NGLDTSV  Q++KHVLKVSLD TRYEYYT+G YD+  D Y PD+  VDGW GLRYDYGNFYASKTFFDP K RRILWGWANESD+ QDD  KGWAGIQLIPRKLWLDP+G QLIQWPIEE++ LRGQ++ + S+ +  GEH+EVKG+TAAQADVD TFSF SLD+AE FDP W  L A DVC   GS  +GGLGPFG LTLASE LEE+ PVFFRVFK  DK KVL+CSDA RSS+   GLYKP F+G+VDVDL+DKK+SLRSLID+SVVESFGA G+T +TSRVYP IA+++ AHLFVFNNG+E +T+++L AW M  P +MN+
Sbjct:    2 MMGVFRFVSAICVAFVFLAITS--SVEGSHRIYPEYQSLQANNVKLVHRTGFHFQPPKHWINDPNGPMYYNGLYHLFYQYNPKGAVWGNIVWAHSVSKDLINWEALEPAIYPSEWFDINGCWSGSATILPGNKPVILYTGI---DPKQRQIQNYAIPKNLSDPYLREWVKPKDNPVVDPDSKVNASAFRDPTTAWYADGHWRILVGSKRKHRGIAYLYRSKNFKKWVKAEHPLHSKAKTGMWECPDFFPVSLSGENGLDTSVINQNVKHVLKVSLDLTRYEYYTLGTYDKRKDRYYPDSNLVDGWGGLRYDYGNFYASKTFFDPSKNRRILWGWANESDAIQDDKNKGWAGIQLIPRKLWLDPSGNQLIQWPIEELESLRGQSVQLTSKQIKKGEHVEVKGITAAQADVDVTFSFASLDKAEPFDPKWENLVAQDVCAAKGSKAQGGLGPFGLLTLASENLEEFNPVFFRVFKASDKYKVLLCSDA-RSSSLGSGLYKPSFSGFVDVDLADKKLSLRSLIDHSVVESFGAKGKTVVTSRVYPTIAVFDKAHLFVFNNGSETVTVETLKAWRMNKP-VMNS 574
[Close]
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZHL3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8516741.1}))

HSP 1 Score: 847.425 bits (2188), Expect = 0.000e+0
Identity = 401/563 (71.23%), Postives = 478/563 (84.90%), Query Frame = 0
 
Query:   17 FSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIVRARSE-NSSSFRDPTTAWF--DGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMGSQVLNMGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHLFVFNNGTEAITIDSLDAWSMKAPSL 576
            +SL +N   VEASH+ +  LQSV AVNV  +HRTG+HFQPKKHWINDPNGPM+YKG YHLFYQYNPKGAVWGNIVWAHSIS D+INW  LEPAI+PSKPFDK+GCWSGS T+LPG +P+I+YTGI+ P+  NTQVQN+AVPAN SDPYLREWIKPDNNP+V A  + N ++FRDPTTAW+  DG HW++LVG +RKHRGIAYLYRSR+F+KWTK++HP+H+   TGMWECPDFYPV+ +G NGLDTSV  ++ KHVLKVSLD TR++YYT+G Y  D D YVPDNT+VDGW+GLRYDYGNFYASKTFFD  K RRILWGWANESD+  DDV KGWAGIQ IPRK+WLD NGKQL+QWPIEE++ LRGQ + + +Q LNMG+H+E+KG+TAAQADV  TFS  SLD+AE FDP+W   +A D+C   GST++GG+GPFG LTLASEKLEEYTPVFFRVFK +DK  VLMCSDA  SS+  +GLYKP FAG+V+VDLSDKK+SLRSLID+SVVES+GA G+TCITSRVYP +A++N AHL+ FNNG+E +TID+L+AWSM  P +
Sbjct:   16 YSLILNNGAVEASHKKYMNLQSVRAVNVNHLHRTGFHFQPKKHWINDPNGPMFYKGLYHLFYQYNPKGAVWGNIVWAHSISTDMINWKKLEPAIYPSKPFDKFGCWSGSVTILPGNRPIILYTGIIDPN--NTQVQNYAVPANPSDPYLREWIKPDNNPLVVAVVDVNKTAFRDPTTAWWGRDG-HWRMLVGGKRKHRGIAYLYRSRDFMKWTKSQHPIHTSANTGMWECPDFYPVSLQGENGLDTSVIEKNSKHVLKVSLDVTRFDYYTLGTYYPDKDRYVPDNTTVDGWSGLRYDYGNFYASKTFFDSGKNRRILWGWANESDTTADDVAKGWAGIQTIPRKVWLDTNGKQLVQWPIEELETLRGQKVGLSNQKLNMGDHVEIKGITAAQADVVVTFSLSSLDKAEPFDPSWH--NAQDLCSQKGSTIQGGVGPFGLLTLASEKLEEYTPVFFRVFKAQDKHVVLMCSDAT-SSSFKKGLYKPSFAGFVNVDLSDKKLSLRSLIDHSVVESYGAGGKTCITSRVYPTLAVFNKAHLYAFNNGSEPVTIDNLNAWSMNNPVM 572
[Close]
BLAST of DCAR_020738 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QVY0 ((Beta-fructofuranosidase, insoluble isoenzyme 1 like {ECO:0000313|EMBL:PSS15913.1}))

HSP 1 Score: 846.655 bits (2186), Expect = 0.000e+0
Identity = 403/578 (69.72%), Postives = 477/578 (82.53%), Query Frame = 0
 
Query:    4 VTCFNTILFLVFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYLREWIKPDNNPIV-RARSENSSSFRDPTTAWF--DGVHWKILVGSRRKHRGIAYLYRSRNFLKWTKAKHPLHSKDRTGMWECPDFYPVAPKGMNGLDTSVTGQDIKHVLKVSLDSTRYEYYTVGEYDRDNDIYVPDNTSVDGWAGLRYDYGNFYASKTFFDPDKQRRILWGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQLLRGQNIHMGSQVLNMGEHIEVKGVTAAQADVDATFSFKSLDRAEWFDPNWAKLDALDVCDWMGSTVRGGLGPFGFLTLASEKLEEYTPVFFRVFKTKDKLKVLMCSDAKRSSTTAEGLYKPPFAGYVDVDLSDKKISLRSLIDNSVVESFGAHGRTCITSRVYPKIAIYNNAHLFVFNNGTEAITIDSLDAWSMKAPSLMN 578
            ++ F  +L  + ++     I GVE SH+V+ E +SV AV V+ +HRTG+HFQPKKHWINDPN PMYY G YHLFYQYNPKGAVWGNIVWAHS+S D+INW  L+PAI+PSKPFD+YGCWSGSAT+LPG +P+I+YTGIV P+  NTQVQN+AVPANYSDPYL++W+KPDNNP+V      N ++FRDPTTAW+  DG HW+I+VGSRRKHRG+AYLYRSR+F+ WTKA+HPLHS  +TGMWECPDFYPV+    NGL+TSV   +IKHVLKVSLD TRYEYYTVG Y  + D YVPDNTSVDG AGLRYDYGNFYASKTFFD  K RRILWGWANESD+  +DV KGWAGIQ IPRK+WLD +GKQL+QWPIEE++ LRG+N+H+ +Q LN+G+H+E+KG+ AAQADV+ +FSF SLD+AE FDP+WA +DA  +C  MGSTV GGLGPFG LTLAS  LEEYTPVFFRVFK KDK  VLMCSDA  SS   E LYKP F+G+VDVDL+DKK+SLRSLID+SVVESFG  G+TCITSRVYP +A+  + HLF FNNGTE ITI+ L+AWSM  P LMN
Sbjct:    3 ISMFVCVLVGLVLYGTTTIINGVEGSHKVYKEYKSVPAVEVKQLHRTGFHFQPKKHWINDPNRPMYYNGIYHLFYQYNPKGAVWGNIVWAHSVSTDMINWKPLDPAIYPSKPFDRYGCWSGSATILPGNRPIILYTGIVDPN--NTQVQNYAVPANYSDPYLQKWVKPDNNPLVFPGVGVNGTAFRDPTTAWWGPDG-HWRIIVGSRRKHRGMAYLYRSRDFMSWTKAQHPLHSA-KTGMWECPDFYPVSMDSENGLETSVMKGNIKHVLKVSLDLTRYEYYTVGTYFHEKDRYVPDNTSVDGLAGLRYDYGNFYASKTFFDASKNRRILWGWANESDTASEDVNKGWAGIQTIPRKVWLDKSGKQLLQWPIEELETLRGKNVHLNNQQLNLGDHVEIKGIAAAQADVEVSFSFASLDKAEPFDPSWADMDAQQLCSHMGSTVTGGLGPFGLLTLASANLEEYTPVFFRVFKAKDKHVVLMCSDATSSSLKKE-LYKPSFSGFVDVDLTDKKLSLRSLIDHSVVESFGPGGKTCITSRVYPTLAVLGDCHLFAFNNGTETITIEKLNAWSMNNP-LMN 574
Match NameStatsDescription
Q39692E-Value: 0.000e+0, PID: 98.11Beta-fructofuranosidase, insoluble isoenzyme 2 (3.... [more]
Q39693E-Value: 0.000e+0, PID: 77.70Beta-fructofuranosidase, insoluble isoenzyme 3 (3.... [more]
P26792E-Value: 0.000e+0, PID: 72.40Beta-fructofuranosidase, insoluble isoenzyme 1 (3.... [more]
A0A5B7B5E7E-Value: 0.000e+0, PID: 71.01(Putative beta-fructofuranosidase, insoluble isoen... [more]
A0A5J4ZKR3E-Value: 0.000e+0, PID: 70.30(Uncharacterized protein {ECO:0000313|EMBL:KAA8518... [more]
B0LUL1E-Value: 0.000e+0, PID: 70.49(Cell-wall invertase {ECO:0000313|EMBL:ABY81288.1}... [more]
A0A248XBH5E-Value: 0.000e+0, PID: 70.98(Beta-fructofuranosidase, insoluble isoenzyme CWIN... [more]
B9SWG8E-Value: 0.000e+0, PID: 69.31(Beta-fructofuranosidase, insoluble isoenzyme 3, p... [more]
A0A5J4ZHL3E-Value: 0.000e+0, PID: 71.23(Uncharacterized protein {ECO:0000313|EMBL:KAA8516... [more]
A0A2R6QVY0E-Value: 0.000e+0, PID: 69.72(Beta-fructofuranosidase, insoluble isoenzyme 1 li... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.