DCAR_021310 | CarrotOmics

Resource Type:

Polypeptide

Name:

DCAR_021310

Identifier:

DCAR_021310.mRNA-protein

Sequence:

MQQDQKNKLTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDT
PTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPX
XXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLTSQVRNE
KARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEAL
ADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHP
QLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHAS
LPRSTILHSNIMPPKEQQSNAYITKDRQLKEYSCNNHSKFGDDIPGSLSK
TLQAAAPQRIPQAKPGRVVGTLPPYENGNLINEAYDPRSLIKSTAVPSQV
IPPAYCYRRNSTVKQERSVETERSLSSQTNQVPQSSMATKGRSEIAINID
TNPFYMTRAGINKIDHADERTSSSPNLLQPKSQYGRISKDSSAHRNVGAV
QVGMTRTY*

Sequence Length:

509

Sequence Checksum:

4e85371261f5343ef15bf3dbd755efb7

View location in JBrowse:

DCARv2_Chr6:24156945..24161703+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, DCAR_021310, derives from mRNA, DCAR_021310.

Blast Results:

The following BLAST results are available for this feature:

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20

[Close]

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HNZ0 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0
Identity = 354/513 (69.01%), Postives = 395/513 (77.00%), Query Frame = 0

Query:    9 LTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPXXXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLT------SQVRNEKARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHASLPRSTILHSNIMPPKEQQSNAYITKDRQLKEYSCNNHSKFGDDIPGSLSKTLQAAAPQRIPQAKPGRVVGTLPPYENGNLINEAYDPRSLIKSTAVPSQVIPPAYCYRRNSTVKQERSV-ETERSLSSQTNQVPQSSMATKGRSEIAINIDTNPFYMTRAGINKIDHADERTSSSPNLLQPKSQYGRIS------KDSSAHRNVGAVQVGMTRTY 508
            L     ANVYHRDLKPKNILANANCKLKICDFGLARVAF+DTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP                 G N  H  D           L+  LL T      S+VRNEKARRYL++MRKKQPV  + KFPNADPLALRLL+RLLAFDPKDRPTAEEALADPYFK LAK +REPSCQPI+KMEFEFERRRVTKEDIRELIFREILEYHPQLL+DYVNGTERTN+LYPSAVDQF+KQFAHLEE SGKTGPVIPLERKH SLPRST++HSN +P KE    A+  KDRQ+ E SC+  S+  D IPG+LS++LQA+  QRIP AKPG+VVG L P ENG+ I +AYD R+LI++  +PSQ +PPAYCYRR S  KQER V E ER LSSQ  QVPQ  M  K   +IAINIDTNPFYMTRAG+ K+DH D+R +   NLLQ K+Q+G I         ++AHR VG VQ GM+R Y
Sbjct:  127 LKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLF--------------PGKNVVHQLD-----------LMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVIFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYVNGTERTNFLYPSAVDQFRKQFAHLEENSGKTGPVIPLERKHVSLPRSTVVHSNTIPAKEPHIIAF--KDRQIAEESCSRSSRDTDGIPGNLSRSLQAS--QRIPMAKPGKVVGPLAPPENGSAIKDAYDHRTLIRNAVLPSQALPPAYCYRRTSAGKQERCVGEAERDLSSQAKQVPQCGMTAKLAPDIAINIDTNPFYMTRAGVTKVDHVDDRITIDANLLQAKAQFGGIGAAAAAAATAAAHRKVGTVQFGMSRMY 610

[Close]

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZZA0 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0
Identity = 352/509 (69.16%), Postives = 391/509 (76.82%), Query Frame = 0

Query:    9 LTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPXXXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLT------SQVRNEKARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHASLPRSTILHSNIMPPKEQQSNAYITKDRQLKEYSCNNHSKFGDDIPGSLSKTLQAAAPQRIPQAKPGRVVGTLPPYENGNLINEAYDPRSLIKSTAVPSQVIPPAYCYRRNSTVKQERS-VETERSLSSQTNQVPQSSMATKGRSEIAINIDTNPFYMTRAGINKIDHADERTSSSPNLLQPKSQYGRISKDS--SAHRNVGAVQVGMTRTY 508
            L     ANVYHRDLKPKNILANANCKLKICDFGLARVAF+DTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP                 G N  H  D           L+  LL T      S+VRNEKARRYL++MRKKQPV  S KFPNADPLALRLL+RLLAFDPKDRPTAEEALADPYFK LA+ +REPSCQPI+KMEFEFERR+VTKEDIRELIFREILEYHPQLL+DY+NG ERT +LYPSAVDQFKKQFAHLEE  GK+GPVIPLERKHASLPRSTI+HSN +PPKE Q N    K RQ+ E SCN +++  D   G+LS+T Q  APQRIP AKPG+VVG +  YENGNLI E+YDPR +I++T  P Q IPPAYCYRR+   +QERS  ETER L+ Q  QVPQ   ATK   +IAINIDTNPFYMTRAG+ K+DHA +R +   NLLQ K QYG I   S  +A+R VG VQ GM+R Y
Sbjct:  139 LKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLF--------------PGKNVVHQLD-----------LMTDLLGTPSMDTISRVRNEKARRYLTSMRKKQPVSFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLARVEREPSCQPITKMEFEFERRKVTKEDIRELIFREILEYHPQLLKDYMNGIERTTFLYPSAVDQFKKQFAHLEENGGKSGPVIPLERKHASLPRSTIVHSNTIPPKE-QPNVATFKGRQIVEESCNRNTRDADH--GNLSRTSQ--APQRIPLAKPGKVVGPVVAYENGNLIKESYDPRMVIRNTVHPPQAIPPAYCYRRSGMGRQERSTTETERDLTLQAKQVPQCGSATKLAPDIAINIDTNPFYMTRAGVVKMDHAADRIAIDTNLLQSKGQYGGIGAASAVAANRKVGTVQFGMSRMY 617

[Close]

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5Q1N6 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 653.284 bits (1684), Expect = 0.000e+0
Identity = 337/513 (65.69%), Postives = 386/513 (75.24%), Query Frame = 0

Query:    9 LTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPXXXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLT------SQVRNEKARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHASLPRSTILHSNIMPPKEQQSNAYITKDRQLKEYSCNNHSKFGDDIPGSLSKTLQAAAPQRIPQAKPGRVVGTLPPYENGNLINEAYDPRSLIKSTAVPSQVIPPAYCYRRNSTVKQERS-VETERSLSSQTNQVPQSSMATKGRSEIAINIDTNPFYMTRAGINKIDHADERTSSSPNLLQPKSQYGRISKDS------SAHRNVGAVQVGMTRTY 508
            L     ANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTP+TIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEV+TGKP                 G N  H  D           L+  LL T      S+VRN+KARRYL++MRKK PVP + KFPNADP AL LL+RLLAFDPKDRPTAEEAL DPYFK LAK +REPSCQPI+KMEFEFERRRVTKEDIRELIFREILEYHPQLL+DYVNGTERTN+LYPSAVDQF+KQFAHLEE  GK+GPVIPLERKH SLPRST++HS+ +P KEQQ+ A   +DR   E   N + +  + IP ++S+T QA   QRIP AKPG+VVG++ PYENG+   +AYDPR+ IKSTA+P Q +P AYCYR++ST K ERS +E ER LSSQ  QV Q  MA K   ++AINID+NPF+MTR G++K +HAD+R     +LLQ K+QYG I          +AHR VG VQ GM R Y
Sbjct:  140 LKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPSTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVITGKPLF--------------PGKNVVHQLD-----------LMTDLLGTPSLDTISRVRNDKARRYLTSMRKKPPVPFAQKFPNADPSALCLLERLLAFDPKDRPTAEEALGDPYFKGLAKIEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYVNGTERTNFLYPSAVDQFRKQFAHLEENGGKSGPVIPLERKHVSLPRSTVVHSSSIPSKEQQNLASF-RDRHSAEEVYNKNPRESEGIPINISRTSQAQ--QRIPLAKPGKVVGSVVPYENGSNTKDAYDPRTCIKSTALPLQSVPSAYCYRKSSTGKLERSTMEAERDLSSQ-KQVQQCGMAAKYAPDVAINIDSNPFFMTRVGVSKEEHADDRVMIDTSLLQTKAQYGGIGSGGAATASRAAHRKVGTVQYGMARMY 623

[Close]

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6S054 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 345/510 (67.65%), Postives = 393/510 (77.06%), Query Frame = 0

Query:    9 LTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPXXXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLT------SQVRNEKARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHASLPRSTILHSNIMPPKEQQSNAYITKDRQLKEYSCNNHSKFGDDIPGSLSKTLQAAAPQRIPQAKPGRVVGTLPPYENGNLINEAYDPRSLIKSTAVPSQVIPPAYCYRRNSTVKQERS-VETERSLSSQTNQVPQSSMATKGRSEIAINIDTNPFYMTRAGINKIDHADERTSSSPNLLQPKSQYGRIS---KDSSAHRNVGAVQVGMTRTY 508
            L     ANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP                 G N  H  D           L+  LL T      S+VRN+KARRYL++MRKKQPV  + KFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFK L+K +REPSCQPI+KMEFEFERRRVTKEDIRELIFREILEYHPQLL+DY+NGTERTN+LYPSAVDQF+KQFAHLEE SGK+ PVIPLERKH SLPRSTI+HSN +PPKEQQ+ AY+ KD++  E +  N S+  + I  +LS+T+Q  APQRIP AKPGRVVG + PYENGN++ +AYD R+LI+ST +P Q +PP+YCYR+ S   QERS VE  R  SSQ+ Q  Q  MATK   ++AINIDTNPF+MTR G+NK++H D+R +   N LQ K  YG I      ++AHR VG VQ GM+R Y
Sbjct:  139 LKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLF--------------PGKNVVHQLD-----------LMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPVSFAQKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKGLSKIEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYINGTERTNFLYPSAVDQFRKQFAHLEENSGKSAPVIPLERKHVSLPRSTIVHSNTVPPKEQQNYAYL-KDQKHAEEAYKN-SRDTEGIHVNLSRTMQ--APQRIPLAKPGRVVGPVVPYENGNIVKDAYDRRTLIRSTVLPPQAVPPSYCYRKPSGGSQERSAVEVNRDFSSQSKQAAQCGMATKVAPDVAINIDTNPFFMTRVGVNKVEH-DDRIAIDTNFLQSKVPYGGIGTAAATAAAHRKVGTVQFGMSRMY 618

[Close]

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7HBS7 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 645.966 bits (1665), Expect = 0.000e+0
Identity = 342/513 (66.67%), Postives = 394/513 (76.80%), Query Frame = 0

Query:    9 LTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPXXXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLT------SQVRNEKARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHASLPRSTILHSNIMPPKEQQSNAYITKDRQLKEYSCNNHSKFGDDIPGSLSKTLQAAAPQRIPQAKPGRVVGTLPPYENGNLINEAYDPRSLIKSTAVPSQVIPPAYCYRRNSTVKQER--SVETERSLSSQTNQVPQSSMATKGRSEIAINIDTNPFYMTRAGINKIDHADERTSSSPNLLQPKSQY-----GRISKDSSAHRNVGAVQVGMTRTY 508
            L     ANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTG+P                 G N  H  D           L+  LL T      S+VRN+KARRYL++MRKKQPV  S KFPNADPLALRLL+RLLAFDPKDRPTAEEALADPYFK L+K +REPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLL+DY+NGTERTN+LYPSAVDQF+KQFAHLEE  GK+GPVIP ERKH SLPRST +HSN +PPKEQ + A + +DRQ +E   N +S+  + IP +LS+ +Q  APQR   AKPG+VVG + PYEN  ++ ++YDPRS I+ST VP Q +PPAYCYR++ST KQER  S+++ER LSSQ  QVPQ  MATK   +IAINID+NPF+MTRAG+NK++H ++R +   NLLQ K+QY        +   + HR +G VQ GMTR Y
Sbjct:  158 LKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGRPVF--------------PGKNVVHQLD-----------LMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPVQFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLSKVEREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSGPVIPPERKHVSLPRSTTVHSNTVPPKEQNNGASL-RDRQAEEVY-NKNSRGTEGIPQNLSRAMQ--APQRFTLAKPGKVVGPVVPYENTGVMKDSYDPRSFIRSTVVP-QGVPPAYCYRKSSTGKQERPTSIDSERDLSSQIKQVPQCGMATKFSPDIAINIDSNPFFMTRAGVNKVEHVEDRIAIDTNLLQGKAQYGGIGAATAATTGTTHRKIGTVQYGMTRMY 640

[Close]

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KA08 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 334/514 (64.98%), Postives = 393/514 (76.46%), Query Frame = 0

Query:    9 LTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPXXXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLT------SQVRNEKARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHASLPRSTILHSNIMPPKEQQSNAYITKDRQLKEYSCNNHSKFGDDIPGSLSKTLQAAAPQRIPQAKPGRVVGTLPPYENGNLINEAYDPRSLIKSTAVPSQVIPPAYCYRRNSTVKQERSV-ETERSLSSQTNQVPQ--SSMATKGRSEIAINIDTNPFYMTRAGINKIDHADERTSSSPNLLQPKSQYGRI-----SKDSSAHRNVGAVQVGMTRTY 508
            L     ANVYHRDLKPKNILANANCKLKICDFGLARV+F+DTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP                 G N  H  D           L+  LL T      S+VRN+KARRYL++MRKKQPVP + KFPNADP AL LL+RLLAFDPKDRPTAEEALADPYFK LAK +REPSCQPI+KMEFEFERRRVTKEDIRELIFREILEYHPQLL+DYVNGTERTN+LYPSAVDQF++QFAHLEE  GK+GPVIPLERKH SLPRSTI+HSN +PP+EQ  N     +RQ  E S N + +  D    ++S TLQA   QRIP AKPG+VVG++ PY+NG+++ +AYDPR+L++ + +P+Q +PPAY  R++ST KQE+S+ ET+R LSSQ  QV Q  +  A K   +IAINID+NPF+MTR GINK++  D+R + + NLLQ K+QYG I     +  +++HR VG VQ GMT+ Y
Sbjct:  139 LKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVSFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLF--------------PGKNVVHQLD-----------LMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPVPFAQKFPNADPFALHLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYVNGTERTNFLYPSAVDQFRRQFAHLEENGGKSGPVIPLERKHVSLPRSTIVHSNSIPPREQ--NIASLTERQTVEESYNKNYRDSDGTYVNIS-TLQAQ--QRIPMAKPGKVVGSVAPYDNGSIMKDAYDPRTLVRGSVLPTQALPPAYGCRKSST-KQEKSILETQRELSSQ-KQVQQFGTDTAAKFAPDIAINIDSNPFFMTRVGINKVEPIDDRFTINTNLLQAKAQYGGISAAASATTAASHRKVGTVQYGMTKMY 620

[Close]

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A290 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 346/513 (67.45%), Postives = 388/513 (75.63%), Query Frame = 0

Query:    9 LTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPXXXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLT------SQVRNEKARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHASLPRSTILHSNIMPPKEQQSNAYITKDRQLKEYSCNNHSKFGDDIPGSLSKTLQAAAPQRIPQAKPGRVVGTLPPYENGN-LINEAYDPRSLIKSTAVPSQVIPPAYCYRRNSTVKQERSV-ETERSLSSQTNQVPQSSMATKGRSEIAINIDTNPFYMTRAGINKIDHADERTSSSPNLLQPKSQYGRIS-----KDSSAHRNVGAVQVGMTRTY 508
            L     ANVYHRDLKPKNILANANCKLKICDFGLARVAF+DTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP                 G N  H  D           L+  LL T      SQVRNEKARRYL++MRKKQPVP S KF NADPLALRLL+RLLAFDPKDRPTAEEALADPYFK LA+ +REPSCQPI+KMEFEFERR+VTKEDIRELIFREILEYHPQLL+DY+NG ERTN+LYPSAVDQF+KQFAHLEE  GK GPVIPLERKH SLPRSTI+HSN +PPKE Q N    KDRQ+ E  CN +S+  D   G+LS+T Q  APQRIP AKPG+VVG + P ENGN LI E+YDPR+++++  +P Q IPPAYCYRR+   +QE+   ETER L SQ  Q      ATK   +IAINIDTNPFYMTRAG+ K+DH D+R +   NL+Q K+QYG I        ++AHR VG VQ GM+R Y
Sbjct:  139 LKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLF--------------PGKNVAHQLD-----------LMTDLLGTPSMDTISQVRNEKARRYLTSMRKKQPVPFSQKFSNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLARVEREPSCQPITKMEFEFERRKVTKEDIRELIFREILEYHPQLLKDYMNGIERTNFLYPSAVDQFRKQFAHLEENGGKGGPVIPLERKHVSLPRSTIVHSNTIPPKE-QPNVATFKDRQIVEELCNRNSRDADQ--GNLSRTSQ--APQRIPLAKPGKVVGPVVPSENGNHLIKESYDPRTVMRNGVLPPQAIPPAYCYRRSGMGRQEKCTKETERDLDSQAKQC---GSATKLAPDIAINIDTNPFYMTRAGVMKMDHVDDRIAIDTNLVQSKTQYGGIGTAAAAAAAAAHRKVGTVQFGMSRMY 618

[Close]

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5PEN3 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0
Identity = 338/510 (66.27%), Postives = 390/510 (76.47%), Query Frame = 0

Query:    9 LTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPXXXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLT------SQVRNEKARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHASLPRSTILHSNIMPPKEQQSNAYITKDRQLKEYSCNNHSKFGDDIPGSLSKTLQAAAPQRIPQAKPGRVVGTLPPYENGNLINEAYDPRSLIKSTAVPSQVIPPAYCYRRNSTVKQERSVETERSLSSQTNQVPQSSMATKGRSEIAINIDTNPFYMTRAGINKIDHADERTSSSPNLLQPKSQYGRIS-------KDSSAHRNVGAVQVGMT 505
            L     ANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP                 G N  H  D           L+  LL T      S+VRN+KARRYL++MRKKQPV  S KFPNADP ALRLL+RLLAFDPKDRPTAEEALADPYFK L+K +REPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLL+DY+NGTERTN+LYPSAVDQF+KQFAHLEE  GK+GPVIP ERKH SLPRSTI+HSN +PPKEQQ+   +++DRQ  E   N +SK  + IP +LS+TL A   QR P AKPG+VVG + PYEN ++  +AYDPR+ I+ST +P Q +P AYCYR++ST KQE  +++ER + SQ   VPQ  MA K  ++IAINID+NPF+MTRAG+NK++H +++ S   NLLQ KSQYG +          ++AHR +G VQ GMT
Sbjct:  139 LKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLF--------------PGKNVVHQLD-----------LMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPVQFSQKFPNADPSALRLLERLLAFDPKDRPTAEEALADPYFKGLSKVEREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENVGKSGPVIPPERKHVSLPRSTIVHSNTVPPKEQQN---LSRDRQAAEEVFNKNSKESEGIPANLSRTLPAQ--QRFPLAKPGKVVGPVVPYENASVRRDAYDPRTFIRSTVLP-QAVPAAYCYRKSSTGKQE--MDSEREMPSQVKHVPQCGMAAKFATDIAINIDSNPFFMTRAGVNKVEHIEDQISIDTNLLQTKSQYGGVGAAATAAAATAAAHRKIGTVQYGMT 615

[Close]

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2MB77 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0
Identity = 343/515 (66.60%), Postives = 390/515 (75.73%), Query Frame = 0

Query:    9 LTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPXXXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLT------SQVRNEKARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHASLPRSTILHSNIMPPKEQQSNAYI--TKDRQLKEYSCNNHSKFGDDIPGSLSKTLQAAAPQRIPQAKPGRVVGTLPPYENGNLINEAYDPRSLIKSTAVPSQVIPPAYCYRRNSTVKQERSV-ETERSLSSQTNQVPQSSMATKGRSEIAINIDTNPFYMTRAGINKIDHADERTSSSPNLLQPKSQYGRI------SKDSSAHRNVGAVQVGMTRTY 508
            L     ANVYHRDLKPKNILANANCKLKICDFGLARVAF+DTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP                 G N  H  D           L+  LL T      S+VRNEKARRYL++MRKKQ VP   KFPNADPLALRLL+RLLAFDPKDRPTAEEALADPYFK LAK +REPSCQPI+KMEFEFERRRVTKEDIRELIFREILEYHPQLL+DY+NGTERTN+LYPSAVDQF+KQFA+LEE  GK+GPVIPLERKH SLPRSTI+HSN +PPKEQ    YI   KDRQ  E + N +S+  D I  ++ +++QA+  QRIP AKPG+VVG + PYENGN   +AYDPR++I++  +P Q +PPAY YR++S   QERSV E++R LSSQ  Q PQ  MA K   EIAINID NPF+MTRAG+ K++H D+R     NLLQ K+QYG I      +  ++ HR VG VQ GMTR Y
Sbjct:  139 LKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLF--------------PGKNVVHQLD-----------LMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQLVPFEQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAYLEENGGKSGPVIPLERKHVSLPRSTIVHSNAIPPKEQ---PYIPPYKDRQTGEEAYNKNSRDTDGISMNVMRSMQAS--QRIPLAKPGKVVGPVVPYENGNG-KDAYDPRTVIRNAVLPPQAVPPAYYYRKSSNGNQERSVTESQRDLSSQVKQAPQCGMAAKLAPEIAINIDNNPFFMTRAGVTKVEHMDDRIGIETNLLQAKAQYGGISAASAAAATAATHRKVGTVQYGMTRMY 622

[Close]

BLAST of DCAR_021310 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4SRH8 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0
Identity = 338/510 (66.27%), Postives = 390/510 (76.47%), Query Frame = 0

Query:    9 LTNFAAANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPXXXXXXTLSWKECCSPAGFNDRHAGDTGNGHYFRTCFLIKVLLLT------SQVRNEKARRYLSTMRKKQPVPLSHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKRLAKADREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLQDYVNGTERTNYLYPSAVDQFKKQFAHLEEGSGKTGPVIPLERKHASLPRSTILHSNIMPPKEQQSNAYITKDRQLKEYSCNNHSKFGDDIPGSLSKTLQAAAPQRIPQAKPGRVVGTLPPYENGNLINEAYDPRSLIKSTAVPSQVIPPAYCYRRNSTVKQERSVETERSLSSQTNQVPQSSMATKGRSEIAINIDTNPFYMTRAGINKIDHADERTSSSPNLLQPKSQYGRIS-------KDSSAHRNVGAVQVGMT 505
            L     ANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP                 G N  H  D           L+  LL T      S+VRN+KARRYL++MRKKQPV  S KFPNADP ALRLL+RLLAFDPKDRPTAEEALADPYFK L+K +REPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLL+DY+NGTERTN+LYPSAVDQF+KQFAHLEE  GK+GPVIP ERKH SLPRSTI+HSN +PPKEQQ+   +++DRQ  E   N +SK  + IP +LS+TL A   QR P AKPG+VVG + PYEN ++  +AYDPR+ I+ST +P Q +P AYCYR++ST KQE  +++ER + SQ   VPQ  MA K  ++IAINID+NPF+MTRAG+NK++H +++ S   NLLQ KSQYG +          ++AHR +G VQ GMT
Sbjct:  139 LKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLF--------------PGKNVVHQLD-----------LMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPVQFSQKFPNADPSALRLLERLLAFDPKDRPTAEEALADPYFKGLSKVEREPSCQPISKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENVGKSGPVIPPERKHVSLPRSTIVHSNTVPPKEQQN---LSRDRQAAEEVFNKNSKESEGIPANLSRTLPAQ--QRFPLAKPGKVVGPVVPYENASVRRDAYDPRTFIRSTVLP-QAVPAAYCYRKSSTGKQE--MDSEREMPSQVKHVPQCGMAAKFATDIAINIDSNPFFMTRAGVNKVEHIEDQISIDTNLLQTKSQYGGVGAAATAAAATAAAHRKIGTVQYGMT 615


Match Name	Stats	Description
F6HNZ0	E-Value: 0.000e+0, PID: 69.01	Mitogen-activated protein kinase {ECO:0000256\|ARBA... [more]
A0A5J4ZZA0	E-Value: 0.000e+0, PID: 69.16	Mitogen-activated protein kinase {ECO:0000256\|ARBA... [more]
A0A4U5Q1N6	E-Value: 0.000e+0, PID: 65.69	Mitogen-activated protein kinase {ECO:0000256\|ARBA... [more]
A0A2P6S054	E-Value: 0.000e+0, PID: 67.65	Mitogen-activated protein kinase {ECO:0000256\|ARBA... [more]
A0A5C7HBS7	E-Value: 0.000e+0, PID: 66.67	Mitogen-activated protein kinase {ECO:0000256\|ARBA... [more]
A0A067KA08	E-Value: 0.000e+0, PID: 64.98	Mitogen-activated protein kinase {ECO:0000256\|ARBA... [more]
A0A5B7A290	E-Value: 0.000e+0, PID: 67.45	Mitogen-activated protein kinase {ECO:0000256\|ARBA... [more]
A0A2H5PEN3	E-Value: 0.000e+0, PID: 66.27	Mitogen-activated protein kinase {ECO:0000256\|ARBA... [more]
A0A7N2MB77	E-Value: 0.000e+0, PID: 66.60	Mitogen-activated protein kinase {ECO:0000256\|ARBA... [more]
V4SRH8	E-Value: 0.000e+0, PID: 66.27	Mitogen-activated protein kinase {ECO:0000256\|ARBA... [more]

Pages

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.