Resource Type:
Polypeptide
Name:
DCAR_022553
Identifier:
DCAR_022553.mRNA-protein
Sequence:
MSCASVQALREVEEHKPITSLATSGTPELTKPNSSKGWDELVQRMKLQKL
ESSKNNISYRASVSMQNKDERIHNGKFHSYDLDHIAMRGASKKSTEVEQK
NDVPFNLHSSVAQPRVDSERYEANNKRERGYINGLSGDASTQQHNTVSNN
DHSSQTLGNEGEQNISVTCIPKAQPNGLSVKHLIEKMERSPGKDENLANG
GSKKDPDTSETYVVEISAERTNGHLREKLNRIYDKVLVVDNVAAAKEIVE
KLTNQYRHLVAGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDV
LDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTM
HMARLWDSSRRIIGGYSLEVLTSDRKVMSAAGVCPSEGLIGKISMKTIFG
RRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKN
KLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEI
EKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRKT
GDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASG
WPSMSGVALKALSGKVSAEYEFADESLDSEPDGSIEIPEMEENEGAITDT
SAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISG
KNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSL
IVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEH
KDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLAR
DWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKF
PSASTYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLL
LQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQN
WYAAK*
Sequence Length:
1006
Sequence Checksum:
8ae3b99df94668fb163d119f6be336b3
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_022553, derives from mRNA, DCAR_022553. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BSS7 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1288.48 bits (3333), Expect = 0.000e+0
Identity = 618/819 (75.46%), Postives = 692/819 (84.49%), Query Frame = 0
Match: A0A5B7BSS7 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1288.48 bits (3333), Expect = 0.000e+0
Identity = 618/819 (75.46%), Postives = 692/819 (84.49%), Query Frame = 0
Query: 207 DTSETYVVEISAERTNGHLREKLNRIYDKVLVVDNVAAAKEIVEKLTNQYRHLV-------AGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDVLDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTMHMARLWDSSRRIIGGYSLEVLTSDRKVMSAAGVCPSEGLIGKISMKTIFGRRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKNKLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEIEKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRKTGD-ILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASGWPSMSGVALKALSGKVSAEYEFADESLDSEPDGSIE-IPEMEENEGAIT---------DTSAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEHKDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKFPSAS--TYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQNWYAAK 1005
D +ETY ++AE LRE+L+RIYD VLVVDN+ AK+IV LTNQY+HLV A IDVKQETP++HGEIICFS+YSGP A +GNGKSCIWVDVLDGGG+++LA FAPFFEDPSIKKVWHNYSFDNH+IENYGLKVSGFHADTMHMARLWDSSRR++GGYSLE LTS+ KVMS AG C K+SMKTIFGRRK+KKDGSEGK+I IPPVEELQR ER+PW+ YSALDSI+TL LY SLK KLS W + G +GSMF FYEKYWRPFGELLV +ET+GMLVDR YLAE+EKVA AEQQ+A +RFRNWAS+HCPDARYMNVGSD QLRQLFFGGTANRK D L EE+E K+PN+D +IEEGKK TK+R + L I + + +E YTASGWPS+SG ALK L+GKVSAE++F D++ + D S + + E +E + T TSAYGTAY+AFGGG G EACHAIA+LCEVCSIDSLISNFILPLQG HISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHL+NCKSMLDAFK+GGDFHSRTAMNMYP+IR+AVE K VLLEW PQPGEDKPP PLLKDAFASERR+AKMLNFSIAYGKT VGLARDWKVS+KEA+E V WY +RKEVL WQE RKKEA + VHTLLGR R FPS S + +Q+GHIERAAINTPVQGSAADVAMCAMLEI KNARLKELGW+LLLQVHDEVILEGPT+SAE+AKAIVV+CMSKPFNG+NIL V LSVDAK AQ+WY+AK
Sbjct: 322 DVNETYTKSVTAEEEQRGLRERLSRIYDTVLVVDNIFVAKKIVGMLTNQYKHLVHACDTEVAKIDVKQETPIDHGEIICFSIYSGPAANYGNGKSCIWVDVLDGGGRNLLAEFAPFFEDPSIKKVWHNYSFDNHVIENYGLKVSGFHADTMHMARLWDSSRRMVGGYSLEALTSEPKVMSGAGSCHDNNF-SKVSMKTIFGRRKVKKDGSEGKIITIPPVEELQREERRPWICYSALDSINTLNLYVSLKKKLSERTWMLEGKLQGSMFGFYEKYWRPFGELLVKMETEGMLVDRAYLAEMEKVAKAEQQVATNRFRNWASRHCPDARYMNVGSDAQLRQLFFGGTANRKNPDESLPEERELKVPNIDKVIEEGKKIPTKYRTVKLKSIVKNLETEMYTASGWPSVSGDALKTLAGKVSAEFDFTDDAYQLQSDDSDKNLLEKTSDEDSKTRGVAGSEDSSTSAYGTAYTAFGGGRSGREACHAIAALCEVCSIDSLISNFILPLQGSHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLSNCKSMLDAFKAGGDFHSRTAMNMYPHIREAVEQKQVLLEWDPQPGEDKPPAPLLKDAFASERRRAKMLNFSIAYGKTVVGLARDWKVSVKEAKEIVDLWYKERKEVLKWQEERKKEAHKNNCVHTLLGRTRTFPSMSNASPSQKGHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWRLLLQVHDEVILEGPTDSAELAKAIVVECMSKPFNGKNILNVDLSVDAKCAQDWYSAK 1139
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7M2Y4 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1284.24 bits (3322), Expect = 0.000e+0
Identity = 618/812 (76.11%), Postives = 696/812 (85.71%), Query Frame = 0
Match: A0A6S7M2Y4 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1284.24 bits (3322), Expect = 0.000e+0
Identity = 618/812 (76.11%), Postives = 696/812 (85.71%), Query Frame = 0
Query: 207 DTSETYVVEISAERTNGHLREKLNRIYDKVLVVDNVAAAKEIVEKLTNQYRHLV-------AGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDVLDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTMHMARLWDSSRRIIGGYSLEVLTSDRK-VMSAAGVCPSEGLIGKISMKTIFGRRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKNKLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEIEKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRK-TGDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASGWPSMSGVALKALSGKVSAEYEFADESLDSEPDGSIEIPEMEENEGAITDTS--AYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEHKDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKFPSA--STYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQNWYAAK 1005
D +ETY+V + + + HL++KL IYDKVLVVDN++ AK++VEKLT QYRHLV A IDVKQETPV+HGE+ICFS+YSG +A FGNGKSCIWVDVLDGGGK ML IF+PFFEDP IKKVWHNYSFDNH+IENYGL + GFHADTMHMARLWDSSRR+ GGYSLE LTSD K +MS A + P+E LIGK+SMKTIFGR+KLKKDG EGKV++IPPVEELQRVER+PWV YSALDSISTL+LYE LK+KLS EW+ NGV +G++F FYE+YWRPFGELLV +ET+GMLVDR YL EIEKVA EQQIAADRFRNWASK C DA++MNVGSDTQLRQLFFGG N K L EKEFK+PNVDNIIEEGKK ATKFRKI LH I +++E YTASGWPS+ G ALK L+GK+S +Y+F D+ + E D + +++ G + S +YGTAY AFGGGS+G EACHAIA+LCEVCSIDSLISNFILPLQG HISG+NGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAF++GGDFHSRTAMNMYPYIR+A+E K VLLEW+P+PG++ PPVPLLKD FASERRKAKMLNFSIAYGKT VGL+RDWKVS+ EA ETV RWY R+EVL WQE RKKEAR G V+TLLGRAR FPS + + RGHIERAAINTPVQGSAADVAMCAMLEI KNARL+ELGWKLLLQVHDEVILEGPTESAE+AK IVVDCMSKPF+G+NILKVGLSVDAKFA+NWY+AK
Sbjct: 291 DLNETYIVPLDFKEYS-HLQKKLTSIYDKVLVVDNISIAKQVVEKLTTQYRHLVHACDTEVAAIDVKQETPVDHGEVICFSIYSGHEADFGNGKSCIWVDVLDGGGKSMLDIFSPFFEDPFIKKVWHNYSFDNHVIENYGLTLGGFHADTMHMARLWDSSRRMSGGYSLEALTSDSKGIMSGANLGPNEELIGKVSMKTIFGRKKLKKDGKEGKVVIIPPVEELQRVEREPWVCYSALDSISTLKLYERLKSKLSNREWKFNGVTKGTLFDFYEQYWRPFGELLVKMETEGMLVDRDYLMEIEKVAKVEQQIAADRFRNWASKLCADAKFMNVGSDTQLRQLFFGGIENSKDQSQSLPMEKEFKVPNVDNIIEEGKKTATKFRKIKLHAICSGLQTETYTASGWPSVCGDALKTLAGKISMDYDFIDDD-NEELDENTSDDFIDKKPGNFSKISENSYGTAYEAFGGGSEGQEACHAIAALCEVCSIDSLISNFILPLQGSHISGRNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFEAGGDFHSRTAMNMYPYIREAIESKQVLLEWHPEPGQETPPVPLLKDMFASERRKAKMLNFSIAYGKTAVGLSRDWKVSVNEARETVARWYGGREEVLRWQEARKKEARRIGCVYTLLGRARTFPSTKNAPASHRGHIERAAINTPVQGSAADVAMCAMLEISKNARLRELGWKLLLQVHDEVILEGPTESAEIAKKIVVDCMSKPFDGKNILKVGLSVDAKFAKNWYSAK 1100
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251UTQ0 ((Putative DNA-directed DNA-polymerase, family A, mitochondria, DNA polymerase A {ECO:0000313|EMBL:OTG26474.1}))
HSP 1 Score: 1280 bits (3311), Expect = 0.000e+0
Identity = 629/840 (74.88%), Postives = 711/840 (84.64%), Query Frame = 0
Match: A0A251UTQ0 ((Putative DNA-directed DNA-polymerase, family A, mitochondria, DNA polymerase A {ECO:0000313|EMBL:OTG26474.1}))
HSP 1 Score: 1280 bits (3311), Expect = 0.000e+0
Identity = 629/840 (74.88%), Postives = 711/840 (84.64%), Query Frame = 0
Query: 181 KHLIEKMERSPGKDENLANGGSKKD---PDTSETYVVEISAERTNGHLREKLNRIYDKVLVVDNVAAAKEIVEKLTNQYRHLV-------AGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDVLDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTMHMARLWDSSRRIIGGYSLEVLTSDRK-VMSAAGVCPSEGLIGKISMKTIFGRRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKNKLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEIEKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRK-TGDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASGWPSMSGVALKALSGKVSAEYEFADESLDSEPDGSIEIPEMEENEG-AITDTSAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEHKDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKFPSA--STYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQNWYAAK 1005
KH + K +S ++ NG +KD D +ETY+V I ++ + HL+++L RIYDKVLVVD++ AKE+V KLT +YRHLV A IDVKQETPV+HGE+ICFSVY G +A FGNGKSCIWVDVLDGGGK +L IF+ FFEDP+IKKVWHNYSFDNH+IENYG+K+SGFHADTMHMARLWDSSRR+ GGYSLE LTSD K +MS A + P+E LIGK+SMKTIFGR+KLKKDGSEGK++VIPPVEELQRVER+PWV YSALDSISTL+LYE LK KLS W NGV +G++F FYE+YWRPFGELLV +ET+G+LVDR +L EIEK+A EQQIAADRFRNWASK CPDA++MNVGSDTQLRQLFFGG N K L EKEFK+PNVDNIIEEGKK ATKFRKI L+ I ++ E YTASGWPS+SG ALK L+GKVS +Y+F D LD + D + + E + + + S YGTAY AFGGGS+G EACHAIA+LCEVCSIDSLISNFILPLQG HISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQ FIAAPGNSLIVADYGQLELRILAHLA CKSMLDAF++GGDFHSRTAMNMYPYIRDA++ K VLLEW+PQPG++ PPVPLLKD +ASERRKAKMLNFSIAYGKT VGLARDWKVS+ EA+ETVKRWY+ R+EVL WQE RKKEAR G V+TLLGRAR FPS +T + RGHIERAAINTPVQGSAADVAMCAMLEI KNARL+ELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPF+G+NILKVGLSVDAKFAQNWY+AK
Sbjct: 305 KHPVSK-SKSQFSEDIPVNGVHQKDLQCDDFNETYIVPIDSKDST-HLQKRLKRIYDKVLVVDDIIKAKEVVRKLTTEYRHLVYACDTEVAAIDVKQETPVDHGEVICFSVYGGHEADFGNGKSCIWVDVLDGGGKKILDIFSRFFEDPNIKKVWHNYSFDNHVIENYGIKLSGFHADTMHMARLWDSSRRMSGGYSLEALTSDSKGIMSGANLGPNEELIGKVSMKTIFGRKKLKKDGSEGKIVVIPPVEELQRVEREPWVCYSALDSISTLKLYERLKIKLSNRVWNFNGVTKGNLFDFYEQYWRPFGELLVKMETEGVLVDRAHLMEIEKIAKVEQQIAADRFRNWASKLCPDAKFMNVGSDTQLRQLFFGGIENSKDPSQTLPLEKEFKVPNVDNIIEEGKKIATKFRKIKLNAICSGLQPETYTASGWPSVSGKALKTLAGKVSMDYDFIDNELDEKDDDVDDDEVVAEAKTKPVANNSDYGTAYVAFGGGSEGHEACHAIAALCEVCSIDSLISNFILPLQGSHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQGFIAAPGNSLIVADYGQLELRILAHLAECKSMLDAFEAGGDFHSRTAMNMYPYIRDAIDRKQVLLEWHPQPGQETPPVPLLKDMYASERRKAKMLNFSIAYGKTPVGLARDWKVSVNEAKETVKRWYNGREEVLRWQEARKKEARSIGCVYTLLGRARTFPSTKNATPSHRGHIERAAINTPVQGSAADVAMCAMLEISKNARLRELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFDGKNILKVGLSVDAKFAQNWYSAK 1142
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZY02 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1277.69 bits (3305), Expect = 0.000e+0
Identity = 619/856 (72.31%), Postives = 704/856 (82.24%), Query Frame = 0
Match: A0A5J4ZY02 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1277.69 bits (3305), Expect = 0.000e+0
Identity = 619/856 (72.31%), Postives = 704/856 (82.24%), Query Frame = 0
Query: 184 IEKMERSPGKDENLANGGSKKDP----------DTSETYVVEISAERTNG----HLREKLNRIYDKVLVVDNVAAAKEIVEKLTNQYRHLV-------AGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDVLDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTMHMARLWDSSRRIIGGYSLEVLTSDRKVMSAAGVCPSEGLIGKISMKTIFGRRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKNKLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEIEKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRK-TGDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASGWPSMSGVALKALSGKVSAEYEFADESLDSEPDGSI-EIPEMEENEGAIT---------DTSAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEHKDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKFPSAS--TYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQNWYAAK 1005
+ + E+ P K EN G ++D D + TY+ I E G +RE+L R YDKVLVVDN+ AAKEIV LTNQYRHLV A IDVKQETP++HGEIICFS+YSGP+A +GNGKSCIWVDVLDGGG ++LA FAPFFEDPSIKKVWHNYSFDNH+IENYGLKVSGFHADTMHMARLWDSSRR+ GGYSLE LT D KVMS+AG C + L GK+SMKTIFGRRK+KKDGSEGK+I IPPVEELQR ER+PW+ YSALDSI+TL LYESLK KLS W + G +GSMF FYEKYWRPFGELLV +E +GMLVDR YLAE+E VA AEQQ+AA+RFRNWA ++CPDAR+MNVGSD QLRQLFFGGTANRK + + L + ++FKIPN+D +IEEGKK TK+R I LH I E +++E YTA+GWPS+SG ALK L+GKVSAE EF D++ + D S + E +E + DTSAYGTAY+AFGGG G EACHA+A+LCEVCSIDSLISNFILPLQG H+SGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHL+NCKSMLDAFK+GGDFHSRTAMNMYP+IR+AVE +VLLEWYPQPGEDKPPVPLLKD FA+ERRKAKMLNFSIAYGKT +GLARDWKVS KEA+ETV WY +RKEVL WQE RK+EA E VHTLLGR R FPS + + +Q+GHIERAAINTPVQGSAADVAMCAMLEI KNARLKE GW+LLLQVHDEVILEGPTESAE+A+AIVV+CMSKPF G+N+L V L+VDAK AQ+WY+AK
Sbjct: 271 MNRKEKIPNKVENRTVNGYQRDARDGKSVSIADDVNATYIKPIPVEEAEGLCQHSIRERLCRNYDKVLVVDNIVAAKEIVRILTNQYRHLVHACDTEVAKIDVKQETPIDHGEIICFSIYSGPEANYGNGKSCIWVDVLDGGGSNLLAEFAPFFEDPSIKKVWHNYSFDNHVIENYGLKVSGFHADTMHMARLWDSSRRMDGGYSLEALTRDPKVMSSAGPCHDKNLNGKVSMKTIFGRRKVKKDGSEGKIITIPPVEELQREERRPWICYSALDSINTLNLYESLKKKLSQRRWMLEGKLQGSMFGFYEKYWRPFGELLVKMEAEGMLVDRAYLAEMETVAKAEQQVAANRFRNWACRYCPDARHMNVGSDAQLRQLFFGGTANRKDSNESLPKGRKFKIPNIDKVIEEGKKAPTKYRTIELHNIVENLQTEIYTATGWPSVSGDALKTLAGKVSAESEFLDDAYQMQSDNSDGNLLEKMSDEDSTRMGVAGSDSFDTSAYGTAYTAFGGGKMGREACHALAALCEVCSIDSLISNFILPLQGSHVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLSNCKSMLDAFKAGGDFHSRTAMNMYPHIREAVEKGEVLLEWYPQPGEDKPPVPLLKDVFAAERRKAKMLNFSIAYGKTILGLARDWKVSGKEAKETVDLWYRERKEVLKWQEERKREAHESNCVHTLLGRTRSFPSMTNASPSQKGHIERAAINTPVQGSAADVAMCAMLEISKNARLKEFGWRLLLQVHDEVILEGPTESAELARAIVVECMSKPFAGKNVLNVDLAVDAKCAQDWYSAK 1126
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H7F9 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1265.75 bits (3274), Expect = 0.000e+0
Identity = 626/863 (72.54%), Postives = 716/863 (82.97%), Query Frame = 0
Match: A0A7J7H7F9 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1265.75 bits (3274), Expect = 0.000e+0
Identity = 626/863 (72.54%), Postives = 716/863 (82.97%), Query Frame = 0
Query: 163 QNISVTCIPKAQPNGLSVKHLIEKMERSPGKDENLANGGSKKDPDTSETYVVEISAERTNG------------HLREKLNRIYDKVLVVDNVAAAKEIVEKLTNQYRHLVAGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDVLDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTMHMARLWDSSRRIIGGYSLEVLTSDRKVMSAAGVCPSEGLIGKISMKTIFGRRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKNKLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEIEKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRK-TGDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASGWPSMSGVALKALSGKVSAEYEFADESLDSEPDGSIE-IP--EMEENEGAITD--TSAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEHKDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKFPSAS--TYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQNWYAAK 1005
+N V+C P + N K +E+ ++ G+ ++ GS + E + EIS++ N HLR++L R+YDKVL++DN+ A+E V+ LTNQYRH V+ IDVKQETPV+HGEIICFS+ SGP A F NGKSCIWVDVL GGGK +LA FAPFFEDPSIKKVWHNYSFDNH++ENYG KVSGFHADTMHMARLWDSSRR GGYSLE LT D KV C LIGK+SMKTIFGR KLKKDGSEGK+I IPPVE+LQR ERK W+SYSALDSIST++LYESLK+KLS MEW+++G EG+M FYEKYW+PFGELLV +ET+GMLVDR YLAEIEKVA AEQQ+AA RFRNWASK+CPDA++MNVGSD QLRQLFFGGT NRK + L +E+EFK+PN + +IEEGKK +KFRKI LHK+G+E++++ YTA+GWPS++ ALK L+GKVSAE++FADE+ E D SIE +P E E +G +D SAYGTAY+AFG G +G EACHAIA+LCEVCSIDSLISNFILPLQG HISGK+GRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSL+VADYGQLELRILAHLANCKSML+AFK+GGDFHSRTAMNMYP+IR+AVE K VLLEW+P+PGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT VGLARDWKVS+KEA ETV WYS R+EV WQE RK+EAR+ G VHTLLGRAR FPS T Q+GHIERAAINTPVQGSAADVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGPTESAE AKAIVVDCMSKPFNG+NIL V LSVDAK A+NWY+AK
Sbjct: 28 KNDPVSCPPISNSN--VTKTSLEQHSKNTGQSNSIEPNGSLSGKLSRE--MEEISSKPFNDCSTGELQHFHQFHLRQRLARVYDKVLLIDNINMARETVKMLTNQYRHCVSKIDVKQETPVDHGEIICFSICSGPDANFCNGKSCIWVDVLAGGGKSILAEFAPFFEDPSIKKVWHNYSFDNHVLENYGFKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDPKV------CRDATLIGKVSMKTIFGRGKLKKDGSEGKIINIPPVEDLQREERKLWISYSALDSISTVKLYESLKSKLSVMEWKIDGHTEGTMLEFYEKYWQPFGELLVKMETEGMLVDRDYLAEIEKVARAEQQVAATRFRNWASKYCPDAKFMNVGSDAQLRQLFFGGTVNRKDPNESLPKEREFKVPNFEKVIEEGKKIPSKFRKIKLHKLGDEIQTDVYTATGWPSITVDALKTLAGKVSAEFDFADEADQLESDDSIENLPGAEASEMKGRASDGRESAYGTAYAAFGEGQEGKEACHAIAALCEVCSIDSLISNFILPLQGSHISGKDGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLVVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEQKHVLLEWHPRPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVKEARETVDLWYSQRQEVRVWQEERKEEARKDGCVHTLLGRARCFPSMDNVTPYQKGHIERAAINTPVQGSAADVAMCAMLEISENARLKELGWRLLLQVHDEVILEGPTESAEDAKAIVVDCMSKPFNGKNILNVDLSVDAKCAKNWYSAK 880
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835D5K0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8391518.1}))
HSP 1 Score: 1261.51 bits (3263), Expect = 0.000e+0
Identity = 633/889 (71.20%), Postives = 715/889 (80.43%), Query Frame = 0
Match: A0A835D5K0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8391518.1}))
HSP 1 Score: 1261.51 bits (3263), Expect = 0.000e+0
Identity = 633/889 (71.20%), Postives = 715/889 (80.43%), Query Frame = 0
Query: 144 HNTVSNNDHSSQTLGNEGEQNISVTCIPKA--QPNGLSVKHLIEKMERSPGKDENLANGGSKKDP----------DTSETYVVEISAERTNG----HLREKLNRIYDKVLVVDNVAAAKEIVEKLTNQYRHLV-------AGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDVLDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTMHMARLWDSSRRIIGGYSLEVLTSDRKVMSAAGVCPSEGLIGKISMKTIFGRRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKNKLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEIEKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRK-TGDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASGWPSMSGVALKALSGKVSAEYEFADE-SLDSEPDGSIEIPEMEENEGAITDTSAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEHKDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKFPSA--STYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQNWYAAK 1005
HN + N + T+ + ++ S T I + Q NG S + L+E ++S G + DP D ETY+ I A+ NG LR++L+ IYDKVL+V +++ AK IV KL QYRHLV + IDVKQETPVNHGE+ICFS+YSGP+ FGNGKSCIWVDVL GGG+D+L FAPFFEDPSIKKVWHNYSFD+H+IENYGLKVSGFHADTMHMARLWDSSRR GGYSLE LTS KVMS A +C LIGKISMKTIFG+RK+KKDGSEGK+I I PVE+LQR ER PW+ YSALDSISTL+L+ESLK+KL MEW + GV +GSMF FYE+YW+PFGELLV +ET+GMLVDR YLA +EKVA AEQ+IAA+RFRNWAS++CPDA +MNVGSD QLRQLFFGG NRK + L + FK+PNV +IEEGKK KFR ITLH +G EM++E YTA+GWPS+SG ALK L+G+VSAE + DE + D EI E +E I DTSAYGTAY+AFGGG +G EACHAIA+LCE+CSIDSLISNFILPLQG HISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFK+GGDFHSRTAMNMYPYIR +V+ K VLLEWYPQPGE KPPVPLLKDAFASERRKAKMLNFSIAYGKT VGLARDWKVS+KEA+ETV WY +RKEVL+WQE RK+EA E VHTLLGRAR FPS S+Y+QRGHIERAAIN+PVQGSAADVAMCAMLEI +NA LKELGW+LLLQVHDEVILEGPTESAEVAK IVVDCMSKPF G N LKV LSVDAK AQNWYAAK
Sbjct: 324 HNNNAVNSLNDSTVDHSRKKVSSFTHIARKGDQSNGSSPRKLLEISKKSDGV---IVTDAIHMDPTNRKSAIVSDDLIETYIQPIIAKEENGIRLPELRKRLSCIYDKVLIVADISVAKGIVSKLMKQYRHLVHACDTEVSKIDVKQETPVNHGEVICFSIYSGPEVDFGNGKSCIWVDVLGGGGRDILIEFAPFFEDPSIKKVWHNYSFDSHVIENYGLKVSGFHADTMHMARLWDSSRRTKGGYSLEALTSYPKVMSGARLCTEGKLIGKISMKTIFGKRKIKKDGSEGKLISIAPVEDLQREERIPWICYSALDSISTLKLFESLKSKLMKMEWVLEGVSKGSMFDFYEEYWQPFGELLVKMETEGMLVDREYLAAVEKVANAEQRIAANRFRNWASRYCPDAMHMNVGSDAQLRQLFFGGRVNRKDPNESLPLARTFKVPNVHKVIEEGKKVPRKFRNITLHGLGVEMQTEMYTATGWPSVSGDALKTLAGRVSAELDSTDEIPPELMVDEVEEILESTVSEDNI-DTSAYGTAYAAFGGGQEGREACHAIAALCEICSIDSLISNFILPLQGSHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPYIRQSVDQKQVLLEWYPQPGEQKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKETVNLWYKERKEVLHWQEERKREAHEDQCVHTLLGRARCFPSITHSSYSQRGHIERAAINSPVQGSAADVAMCAMLEISRNAHLKELGWRLLLQVHDEVILEGPTESAEVAKGIVVDCMSKPFYGTNFLKVDLSVDAKCAQNWYAAK 1208
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UH37 ((DNA polymerase I B, chloroplastic/mitochondrial {ECO:0000313|RefSeq:XP_011097901.1}))
HSP 1 Score: 1261.51 bits (3263), Expect = 0.000e+0
Identity = 609/793 (76.80%), Postives = 683/793 (86.13%), Query Frame = 0
Match: A0A6I9UH37 ((DNA polymerase I B, chloroplastic/mitochondrial {ECO:0000313|RefSeq:XP_011097901.1}))
HSP 1 Score: 1261.51 bits (3263), Expect = 0.000e+0
Identity = 609/793 (76.80%), Postives = 683/793 (86.13%), Query Frame = 0
Query: 225 LREKLNRIYDKVLVVDNVAAAKEIVEKLTNQYRHL-------VAGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDVLDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTMHMARLWDSSRRIIGGYSLEVLTSDRKVMSAAGVCPSEGLIGKISMKTIFGRRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKNKLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEIEKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRK-TGDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKI-GEEMRSEQYTASGWPSMSGVALKALSGKVSAEYEFADESLDSE-PDGSIEIPEMEENEGAITDTSAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEHKDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKFPSA--STYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQNWYAAK 1005
L E+L+++YD VLVVD++ AA+++V KLTN+Y++L VA IDVK+ETPV+HGEIICFS+YSGP+A FG+GKSCIWVDVLDGGGKD+L FAPFFEDPSIKKVWHNYSFDNH+IENYGLKVSGF+ADTMHMARLW+SSRR GGYSLE LT D ++MS A P E +IGK+SMK IFGR+KLKKDGSEGK+I IPPVEELQRVERK W+SYSALDSISTL+LYESL+ KL W V+G +GSMF Y KY +PFGELLV +ET+GMLVDR YLAEIEKVA AEQQ+AADRFR WASK+CPDA+YMNVGSD QLRQLFFGG N K + L EK+FK+PNVDNIIEEGKK TK+RKI L K G + +++YTASGWPS+SG LK L+GKVSA+++F DE D E P+ + G DTSA G AYSAFGGG G+EACHAIA+LCEVCSIDSLISNFILPLQG+HISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFK+GGDFHSRTAMNMYP+IR+AVE KDVLLEW+PQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVS +EA+ETV RWYSDR+EVL+WQE RKKEAR+ VHTLLGRAR FPS ++ A R HIERAAINTPVQGSAADVAMCAML+I KNARLKELGW+LLLQVHDEVILEGPTESAE AKAIVVDCM KPF+G+N L+V L+VDAK AQNWY+AK
Sbjct: 287 LHERLSQVYDTVLVVDSIPAARQVVSKLTNEYKNLIHACDTEVANIDVKEETPVDHGEIICFSIYSGPEADFGDGKSCIWVDVLDGGGKDLLKEFAPFFEDPSIKKVWHNYSFDNHVIENYGLKVSGFYADTMHMARLWNSSRRTEGGYSLEALTGDSQIMSDAKKGPGEKVIGKVSMKNIFGRKKLKKDGSEGKLITIPPVEELQRVERKLWISYSALDSISTLRLYESLEKKLRKTPWSVDGHSKGSMFDNYVKYLQPFGELLVKMETEGMLVDRLYLAEIEKVAKAEQQVAADRFRKWASKYCPDAKYMNVGSDAQLRQLFFGGVQNSKDQNEFLPVEKDFKVPNVDNIIEEGKKNPTKYRKIILRKPDGVNIETDKYTASGWPSVSGDVLKNLAGKVSADFDFLDEDNDEELPENVTHKSSDKNTAGLGIDTSACGAAYSAFGGGQAGIEACHAIAALCEVCSIDSLISNFILPLQGNHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIREAVERKDVLLEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSREEAQETVDRWYSDRQEVLSWQEQRKKEARKYRSVHTLLGRARHFPSLKNASSAHRAHIERAAINTPVQGSAADVAMCAMLQISKNARLKELGWRLLLQVHDEVILEGPTESAEEAKAIVVDCMEKPFDGKNFLRVDLAVDAKCAQNWYSAK 1079
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6NZ24 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1257.28 bits (3252), Expect = 0.000e+0
Identity = 612/822 (74.45%), Postives = 696/822 (84.67%), Query Frame = 0
Match: A0A5N6NZ24 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1257.28 bits (3252), Expect = 0.000e+0
Identity = 612/822 (74.45%), Postives = 696/822 (84.67%), Query Frame = 0
Query: 198 ANGGSKKD---PDTSETYVVEISAERTNGHLREKLNRIYDKVLVVDNVAAAKEIVEKLTNQYRHL-------VAGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDVLDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTMHMARLWDSSRRIIGGYSLEVLTSDRK-VMSAAGVCPSEGLIGKISMKTIFGRRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKNKLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEIEKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRK-TGDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASGWPSMSGVALKALSGKVSAEYEFADESLDSEPDGSIEIPEMEENEGAITDTSAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEHKDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKFPSASTY--AQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQNWYAAK 1005
NG +KD D +ET+++ I ++ + HL+++L IYDKVLVVDN+ AKE+V+KLT +YRHL VA IDVKQETPV+HGE+ICFS+YSG +A FGNGKSCIWVDVLDGGG+++L IF+PFFEDP+IKKVWHNYSFDNH+IENYGLK+SGFHADTMHMARLWDSSRR+ GGYSLE LTSD K +MS A + P+E LIGK+SMKTIFGR+KLKKDGSEGK++VIPPV+ELQRVER+PW+ YSALDSISTL+LYE L+ KLS EW NGV +G++F FYE+YWRPFGELLV +ET+GMLVDR YL EIEK+A EQQ A DRFRNWASK C DA++MNVGSDTQLRQLFFGG N K L EKEFKIPNVDNIIEEGKK ATKFRKI L I +++E YTASGWPS+SG LK L+GKVS +Y+ D+ LD + D +M E ++ YGTAY+AFGGGS+G EAC AIA+LCEVCSIDSLISNFILPLQG HISG+NGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPG SLIVADYGQLELRILAHLA CKSMLDAF++GGDFHSRTAMNMYPYIRDA++ K VLLEW+ QPG++ PPVPLLKD +ASERRKAKMLNFSIAYGKT VGLARDWKVS+ EA ETV RWYS R+EVL WQE RKKEAR+ G V+TLLGRAR FPS +QRGHIERAAINTPVQGSAADVAMCAMLE+ KN RL ELGWKLLLQVHDEVILEGPTESAEVAKAIVV+CMSKPF+G+N+LKVGLSVDAKFA+NWY+AK
Sbjct: 397 VNGVHQKDLHCEDFNETHIIPIDSKEST-HLQKRLRSIYDKVLVVDNIIKAKEVVKKLTTRYRHLIHACDTEVAAIDVKQETPVDHGEVICFSIYSGHEADFGNGKSCIWVDVLDGGGENILDIFSPFFEDPNIKKVWHNYSFDNHVIENYGLKISGFHADTMHMARLWDSSRRMSGGYSLEALTSDSKGIMSGANLGPNEELIGKVSMKTIFGRKKLKKDGSEGKIVVIPPVQELQRVEREPWICYSALDSISTLKLYERLRCKLSDREWIFNGVTKGNLFDFYEQYWRPFGELLVKMETEGMLVDRAYLMEIEKIAKVEQQRATDRFRNWASKLCEDAKFMNVGSDTQLRQLFFGGIDNSKDPSQSLPLEKEFKIPNVDNIIEEGKKTATKFRKIKLKSICSGLQTETYTASGWPSVSGKVLKTLAGKVSMDYDIIDDELDEKDDDVENA-DMAETRCGTDNSLDYGTAYAAFGGGSEGHEACQAIAALCEVCSIDSLISNFILPLQGSHISGRNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGKSLIVADYGQLELRILAHLAECKSMLDAFEAGGDFHSRTAMNMYPYIRDAIDSKQVLLEWHSQPGQENPPVPLLKDMYASERRKAKMLNFSIAYGKTAVGLARDWKVSVNEARETVARWYSGREEVLRWQEARKKEARKIGCVYTLLGRARTFPSTKNISPSQRGHIERAAINTPVQGSAADVAMCAMLELSKNVRLGELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFDGKNVLKVGLSVDAKFAKNWYSAK 1216
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8AJ26 ((DNA polymerase I A, chloroplastic/mitochondrial {ECO:0000313|RefSeq:XP_010267695.1}))
HSP 1 Score: 1256.51 bits (3250), Expect = 0.000e+0
Identity = 604/791 (76.36%), Postives = 681/791 (86.09%), Query Frame = 0
Match: A0A1U8AJ26 ((DNA polymerase I A, chloroplastic/mitochondrial {ECO:0000313|RefSeq:XP_010267695.1}))
HSP 1 Score: 1256.51 bits (3250), Expect = 0.000e+0
Identity = 604/791 (76.36%), Postives = 681/791 (86.09%), Query Frame = 0
Query: 226 REKLNRIYDKVLVVDNVAAAKEIVEKLTNQYRHLV-------AGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDVLDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTMHMARLWDSSRRIIGGYSLEVLTSDRKVMSAAGVCPSEGLIGKISMKTIFGRRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKNKLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEIEKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRKT-GDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASGWPSMSGVALKALSGKVSAEYEFADESLDSEPDGSIEIPEMEENEGAITD-TSAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEHKDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKFPSAS--TYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQNWYAAK 1005
RE+L IY+KVLVVD++A AKEIV LT +Y+ V A IDVK+ETPV+HGE+ICFS+YSGP+ FGN KSCIWVDVLDGGG+D+L FAPFFEDPSIKKVWHNYSFD+H+IENYG+K+SGFHADTMHMARLWDSSRR GGYSLE LT D KVMS A C LIGKISMKTIFG+RK+KKDGSEGK+++I PVEELQR ER PW+ YSALDSISTL+L+ESLK KL M+W ++G G+M+ FYE+YWRPFGELLV +ET+GMLVDRTYLAEIEKVAI EQQ+A RFR WAS +CPDA YMNVGSDTQLRQLFFGG NRK + L ++ F++PNVD +IEEGKK +KFR ITL KIG+EM+++ YTA+GWPS+SG ALK LSGKVSAEYE D+S + D S E P +EE + A+ + SAYGTAYSAFGGG +G EACHAIA+LCEVCSIDSLISNFILPLQG HISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFK+GGDFHSRTAMNMYP+IR+AVE+K VLLEW+PQPGE+KPPVPLLKDAFASERRKAKMLNFSIAYGKT VGLARDWKVS+KEA+ETV WY +R+EVL WQE RK+EA+ + VHTLLGRAR FPS + + +QRGHIERAAINTPVQGSAADVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ESAE A+ IVV+CMSKPF G N LKV LSVDAK AQNWYAAK
Sbjct: 393 RERLICIYEKVLVVDSIAVAKEIVGMLTTRYKDFVHACDTEVANIDVKEETPVDHGEVICFSIYSGPEVDFGNEKSCIWVDVLDGGGRDILMEFAPFFEDPSIKKVWHNYSFDSHVIENYGIKISGFHADTMHMARLWDSSRRTEGGYSLEALTKDPKVMSGAQQCTEGELIGKISMKTIFGKRKIKKDGSEGKIVMIAPVEELQREERIPWICYSALDSISTLKLFESLKVKLQKMKWVLDGFTRGTMYDFYEEYWRPFGELLVKMETEGMLVDRTYLAEIEKVAIEEQQVAVKRFRKWASGYCPDAMYMNVGSDTQLRQLFFGGIVNRKDYNEFLPVKRTFRVPNVDKVIEEGKKAPSKFRNITLFKIGDEMQTDMYTATGWPSISGDALKNLSGKVSAEYELTDDSYGFQSDESSETP-LEETDNAVNEKASAYGTAYSAFGGGKEGREACHAIAALCEVCSIDSLISNFILPLQGSHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIREAVENKRVLLEWHPQPGEEKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKETVNLWYKERQEVLRWQEKRKQEAQTERRVHTLLGRARCFPSMANVSNSQRGHIERAAINTPVQGSAADVAMCAMLEISRNARLKELGWRLLLQVHDEVILEGPSESAEAARGIVVECMSKPFYGINFLKVDLSVDAKCAQNWYAAK 1182
BLAST of DCAR_022553 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H8Y8 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1256.12 bits (3249), Expect = 0.000e+0
Identity = 630/912 (69.08%), Postives = 723/912 (79.28%), Query Frame = 0
Match: A0A7J7H8Y8 (POLAc domain-containing protein {ECO:0000259|SMART:SM00482})
HSP 1 Score: 1256.12 bits (3249), Expect = 0.000e+0
Identity = 630/912 (69.08%), Postives = 723/912 (79.28%), Query Frame = 0
Query: 114 PRVDSERYEANNKRERGYINGLSGDASTQQHNTVSNNDHSSQTLGNEGEQNISVTCIPKAQPNGLSVKHLIEKMERSPGKDENLANGGS-KKDPD----TSETYVVEISAERTNGHLREKLNRIYDKVLVVDNVAAAKEIVEKLTNQYRHLV-------AGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDVLDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTMHMARLWDSSRRIIGGYSLEVLTSDRKVMSAAGVCPSEGLIGKISMKTIFGRRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKNKLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEIEKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRK-TGDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASGWPSMSGVALKALSGKVSAEYEFADESLDSEPDGSIEIPEMEENE---GAITD--TSAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEHKDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLARDWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKFPSA--STYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQNWYAAK 1005
PR+ YE +++++ NG D+ T+ +L ++I QP G S +++++ K N + + +KDP ET + I+ + + R+++ RIYDKVLVVDN++ A++IV LTNQYRH V A IDVKQETPVNHGEIICFS+Y GP+A FG+GKSCIWVDVLDGG KD+L FAPFFEDPSIKKVWHNYSFD H+IENYG KVSGFHADTMHMARLWDSSRR GGYSLE L+ D KV C IGKISMKTIFGR+K+KKDGS+GK+I IPPVEELQR ERKPW+ YSALDS+STL LYESLK+KLS EW++ G K+GSMF FYEKYWRPFGELLV LET GMLVDR YLAE+EKVA AEQQIAA+RFR+WASK+CP+A+YMNVGSD QLRQLFFGG NRK T + L E++EFKIPNV+ +IEEGKK TKFR I LH + + +E YTASGWPS+SG ALK L+GKVSAE F D I +PE + ++ GA++D SAYGTAY+AFGGG G EACHAIA+LCEVCSIDSLISNFILPLQG HISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLANCKSMLDAF++GGDFHSRTAMNMYP+IR+AVE K VLLEW+PQPGE+KPPVPLLKDAF SERRKAKMLNFSIAYGKT VGLARDWKVS+KEA+ETV RWY+ RKEV +WQE RKKEAR+ VHTLLGRAR+FPS +T +Q+GHIERAAINTPVQGSAADVAMCAMLEI +N+RLKELGW+LLLQVHDEVILEGPTESAE AK +VV+CMSKPF+G+NIL V LSVDAK AQNWY+AK
Sbjct: 312 PRISPPPYEPVSQQQKYPGNGKGHDSMTKGRVLPHYLKEQDLSLAQTSPKDI--------QPKGSSSGEFLKEVKEINSKQLNGSTSDALQKDPADGNVVGETSIKPITVHQPDP--RKRVLRIYDKVLVVDNISMARKIVRMLTNQYRHCVHACDTEVANIDVKQETPVNHGEIICFSIYPGPEANFGDGKSCIWVDVLDGGSKDLLVEFAPFFEDPSIKKVWHNYSFDKHVIENYGFKVSGFHADTMHMARLWDSSRRTEGGYSLEALSGDPKV------CCDTNSIGKISMKTIFGRKKVKKDGSDGKLITIPPVEELQREERKPWICYSALDSMSTLNLYESLKSKLSRREWKLGGNKQGSMFDFYEKYWRPFGELLVELETDGMLVDRAYLAEMEKVARAEQQIAANRFRSWASKYCPEAKYMNVGSDAQLRQLFFGGIQNRKDTNEFLPEQREFKIPNVEKVIEEGKKTPTKFRNIKLHSLVSGIEAEIYTASGWPSVSGDALKTLAGKVSAE--FDFTDDSQSDDDIINLPETKLSKAKVGAVSDGSESAYGTAYAAFGGGQNGKEACHAIAALCEVCSIDSLISNFILPLQGSHISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAMPGNSLIVADYGQLELRILAHLANCKSMLDAFRAGGDFHSRTAMNMYPHIREAVEQKRVLLEWHPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKETVNRWYNGRKEVRDWQEERKKEARQTRCVHTLLGRARRFPSMDHATPSQKGHIERAAINTPVQGSAADVAMCAMLEISRNSRLKELGWRLLLQVHDEVILEGPTESAEDAKIVVVECMSKPFDGKNILNVDLSVDAKCAQNWYSAK 1205
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BSS7 | E-Value: 0.000e+0, PID: 75.46 | POLAc domain-containing protein {ECO:0000259|SMART... [more] |
| A0A6S7M2Y4 | E-Value: 0.000e+0, PID: 76.11 | POLAc domain-containing protein {ECO:0000259|SMART... [more] |
| A0A251UTQ0 | E-Value: 0.000e+0, PID: 74.88 | (Putative DNA-directed DNA-polymerase, family A, m... [more] |
| A0A5J4ZY02 | E-Value: 0.000e+0, PID: 72.31 | POLAc domain-containing protein {ECO:0000259|SMART... [more] |
| A0A7J7H7F9 | E-Value: 0.000e+0, PID: 72.54 | POLAc domain-containing protein {ECO:0000259|SMART... [more] |
| A0A835D5K0 | E-Value: 0.000e+0, PID: 71.20 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8391... [more] |
| A0A6I9UH37 | E-Value: 0.000e+0, PID: 76.80 | (DNA polymerase I B, chloroplastic/mitochondrial {... [more] |
| A0A5N6NZ24 | E-Value: 0.000e+0, PID: 74.45 | POLAc domain-containing protein {ECO:0000259|SMART... [more] |
| A0A1U8AJ26 | E-Value: 0.000e+0, PID: 76.36 | (DNA polymerase I A, chloroplastic/mitochondrial {... [more] |
| A0A7J7H8Y8 | E-Value: 0.000e+0, PID: 69.08 | POLAc domain-containing protein {ECO:0000259|SMART... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |