MSTESLFIPVKLPQQKHYNNGITFPAVLSPNPEKLSNNTVPFSSVLQAIK
SSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPR
SNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETP
IVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKST
FLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFN
SMVAAYTGWKDARNDPVKAVTFGDGDEDWEIKKECITETCENTSSAFLSL
GCFNGSFQENSSKVLDDATVSPWSRSCSQYKQSLAPAVGKESIQNAEKRG
FSPAPANNTAVHKSSQKRITSAPGPVVGWPPIRSFRKNIASGCASKLPTE
TKATNEVSTKIAGKRPTERFQKGLFVKINMDGVPIGRKVDLKAYDSYEKL
SSAVDELFRGLLAGLSEANKLNSGSDDNLCFEPTQTDPSVNNIQNSQGEK
AITGLLDGTGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELS
SLLFGSKQEREPA*
| Relationships |
|---|
| The polypeptide, DCAR_026353, derives from mRNA, DCAR_026353. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A834TRJ5 ((Clavaminate synthase-like protein {ECO:0000313|EMBL:KAF7826092.1}))
HSP 1 Score: 451.055 bits (1159), Expect = 3.534e-154
Identity = 224/338 (66.27%), Postives = 270/338 (79.88%), Query Frame = 0
Query: 1 MSTESLFIPVKLPQQKHYNNGITFPAVLSP--NPEKLSNNTVPFSSVLQAIKSSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETPIVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFNSMVAAYTGWKDARNDPVKAVTFGDGDE-DWEIKKECITETCENTSSAFLSLGCFNGSFQENSSKVLDDATVSPWSRSCSQYKQSLA 335
M +E+ F+ +++PQQK YN+GI FP+V+SP P LS+ ++ +I++ LESLL ++GA+LF+GFPV +ASDFNDVVEAFG+ ELPYVGGAAPR+NVVGRVFTANESPPDQKIPFHHEMAQVPEFP+K+FFFCEVEPGSGGETPIVLSH++YERMK++YPDFVE+LE GL+Y RVLGEDD+PSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEW+ED VKTIMGPIPAIKYDK+R+RKIWFNSMVAAYTGW+D RNDPVKAVTFGDG +I +C+ E + S +Q+ +LD+ V RS + ++ LA
Sbjct: 3 MGSEA-FVEIQIPQQKLYNDGIRFPSVVSPPTAPSSLSH-------LIHSIQTHKPFLESLLLQSGALLFRGFPVNTASDFNDVVEAFGYEELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMAQVPEFPSKVFFFCEVEPGSGGETPIVLSHVVYERMKERYPDFVERLEKLGLLYIRVLGEDDNPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWLEDGVKTIMGPIPAIKYDKKRERKIWFNSMVAAYTGWQDERNDPVKAVTFGDGSPLPADIVHDCLKMLEEESVSI---------PWQKGDVMLLDNWAVLHSRRSFTPPRRVLA 323
Match: A0A068TPK0 (TauD domain-containing protein {ECO:0000259|Pfam:PF02668})
HSP 1 Score: 450.284 bits (1157), Expect = 8.246e-154
Identity = 216/275 (78.55%), Postives = 242/275 (88.00%), Query Frame = 0
Query: 1 MSTESLFIPVKLPQQKHYNNGITFPAVLSPNPEKLSNNTVPFSSVLQAIKSSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETPIVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFNSMVAAYTGWKDARNDPVKAVTFGDG 275
M ESLF V++PQQK+Y I FP VLSPNP L +++ + AIK S LESLL ++GA+LF+GFP+ +ASDFN+VVEAFGF ELPYVGGAAPR+NVVGRVFTANESPPDQKIPFHHEMAQVPE+P+KLFFFCEVEPG+GGETPIVLSHI+YERMK+K+P+FVEKLE+ GLIY RVLGE+DDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEW ED VKTIMGPIPAIK DK R+RKIWFNSMVAAYTGW+D RNDPVKAVTFGDG
Sbjct: 1 MPVESLFKEVEVPQQKNYKE-IIFPRVLSPNPNGLPSSSPTLPLLTDAIKESKPWLESLLHQSGALLFRGFPLTTASDFNNVVEAFGFDELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMAQVPEYPSKLFFFCEVEPGTGGETPIVLSHIVYERMKEKHPEFVEKLEEHGLIYIRVLGEEDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWTEDGVKTIMGPIPAIKLDKTRERKIWFNSMVAAYTGWEDKRNDPVKAVTFGDG 274
Match: A0A1S4AIX7 ((clavaminate synthase-like protein At3g21360 {ECO:0000313|RefSeq:XP_016476378.1}))
HSP 1 Score: 449.514 bits (1155), Expect = 1.049e-153
Identity = 221/295 (74.92%), Postives = 251/295 (85.08%), Query Frame = 0
Query: 4 ESLFIPVKLPQQKHYNNGITFPAVLSPNPEKLSNNTVPFSSVLQAIKSSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETPIVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFNSMVAAYTGWKDARNDPVKAVTFGDGDE-DWEIKKECITETCENTSSAF 297
E+L V +PQQKHYN G+ FPAVLSPNP N+T+ S + Q IK L SLL ++GAIL +GFPV SASDFNDVVEAFG+ ELPYVGGAAPR+NV+GRVFTANESPPDQKIPFHHEMAQVPE+P+KLFFFC+VEPGSGGETPIVLSH++YE+MK KYPDFVE+LE+ GLIY RVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEW+ED VKT+MGPIP IK+++ERQ+KIWFNSMVAAYTGWKDARNDPVKAVTFGDG E+ +C+ E+ S A
Sbjct: 3 ENLLTQVGIPQQKHYN-GVPFPAVLSPNP----NSTI--SQLPQIIKEQKPWLGSLLQQSGAILIRGFPVNSASDFNDVVEAFGYEELPYVGGAAPRTNVLGRVFTANESPPDQKIPFHHEMAQVPEYPSKLFFFCDVEPGSGGETPIVLSHVVYEKMKRKYPDFVERLEEHGLIYIRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWIEDGVKTVMGPIPGIKFNQERQQKIWFNSMVAAYTGWKDARNDPVKAVTFGDGQPLPAEVIHDCL-RILEDESVAI 289
Match: A0A5J5BD95 (TauD domain-containing protein {ECO:0000259|Pfam:PF02668})
HSP 1 Score: 449.129 bits (1154), Expect = 1.696e-153
Identity = 217/272 (79.78%), Postives = 239/272 (87.87%), Query Frame = 0
Query: 4 ESLFIPVKLPQQKHYNNGITFPAVLSPNPEKLSNNTVPFSSVLQAIKSSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETPIVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFNSMVAAYTGWKDARNDPVKAVTFGDG 275
ES F + +P QK YN G FPAVLSPNP K +N S + AIK+ L+SLL ++GAIL +GFPV +ASDFNDVVEAFGF ELPYVGGAAPR++VVGRVFTANESPPDQKIPFHHEMAQVPEFP+KLFFFCEVEPGS GETPIVLSHI+YE+MK+KYP+FVE+LE+ GLIYTRVLGE+DDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEW D+VKTIMGPIPAIK DK RQRKIWFNSMVAAYTGW+DARNDPVKAVTFGDG
Sbjct: 3 ESFFTEITIPLQKTYNAGHLFPAVLSPNPNKQPSN---LSLLTGAIKAHKPWLQSLLHKSGAILLRGFPVTTASDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSEGETPIVLSHIVYEKMKEKYPEFVERLEEHGLIYTRVLGEEDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWTGDAVKTIMGPIPAIKLDKTRQRKIWFNSMVAAYTGWEDARNDPVKAVTFGDG 271
Match: A0A1J6J600 ((Clavaminate synthase-like protein {ECO:0000313|EMBL:OIT05263.1}))
HSP 1 Score: 449.129 bits (1154), Expect = 1.869e-153
Identity = 216/285 (75.79%), Postives = 247/285 (86.67%), Query Frame = 0
Query: 3 TESLFIPVKLPQQKHYNNGITFPAVLSPNPEKLSNNTVPFSSVLQAIKSSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETPIVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFNSMVAAYTGWKDARNDPVKAVTFGDGDE-DWEIKKECI 286
E+L V++PQQKHYN G+ FPAVLSPNP N+T+ S + Q IK L SLL+++GAILF+GF V SASDFNDVVEAFG+ ELPYVGGAAPR+NVVGRVFTANESPPDQKIPFHHEMAQVPE+P+KLFFFC++EPGSGGETPIVLSH++YE+MK KYPDFVE+LE+ GLIY RVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEW+ED VKT+MGPIP IK+++ RQ+KIWFNSMVAAYTGWKD RNDPVKAVTFGDG E+ +C+
Sbjct: 2 AENLLTQVQIPQQKHYN-GVPFPAVLSPNP----NSTI--SQLSQIIKEQKPWLSSLLNQSGAILFRGFSVNSASDFNDVVEAFGYEELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMAQVPEYPSKLFFFCDIEPGSGGETPIVLSHVVYEKMKSKYPDFVERLEEHGLIYIRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWIEDGVKTVMGPIPGIKFNQVRQQKIWFNSMVAAYTGWKDTRNDPVKAVTFGDGQPLPAEVIHDCL 279
Match: A0A1U7X365 ((clavaminate synthase-like protein At3g21360 {ECO:0000313|RefSeq:XP_009786567.1}))
HSP 1 Score: 448.743 bits (1153), Expect = 2.736e-153
Identity = 216/285 (75.79%), Postives = 247/285 (86.67%), Query Frame = 0
Query: 3 TESLFIPVKLPQQKHYNNGITFPAVLSPNPEKLSNNTVPFSSVLQAIKSSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETPIVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFNSMVAAYTGWKDARNDPVKAVTFGDGDE-DWEIKKECI 286
E+ V++PQQKHYN G+ FPAVLSPNP N+T+ S + Q IK SLL ++GAILF+GFPV SASDFND VEAFG+ ELPYVGGAAPR+NVVGRVFTANESPPDQKIPFHHEMAQVPE+P+KLFFFC+VEPGSGGETPIVLSH++YE+MK+KYPDFVE+LE+ GLIY RVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEW+ED VKT+MGPIP IK+++ER++KIWFNSMVAAYTGWKDARNDPVKAVTFGDG E+ +C+
Sbjct: 2 AENFLTQVEIPQQKHYN-GVPFPAVLSPNP----NSTI--SQLPQIIKEQKPWFGSLLQQSGAILFRGFPVNSASDFNDAVEAFGYEELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMAQVPEYPSKLFFFCDVEPGSGGETPIVLSHVVYEKMKNKYPDFVERLEEHGLIYIRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWIEDGVKTVMGPIPGIKFNQERRQKIWFNSMVAAYTGWKDARNDPVKAVTFGDGQPLPAEVIHDCL 279
Match: A0A1S3XZ38 ((clavaminate synthase-like protein At3g21360 {ECO:0000313|RefSeq:XP_016445170.1}))
HSP 1 Score: 448.743 bits (1153), Expect = 2.736e-153
Identity = 216/285 (75.79%), Postives = 247/285 (86.67%), Query Frame = 0
Query: 3 TESLFIPVKLPQQKHYNNGITFPAVLSPNPEKLSNNTVPFSSVLQAIKSSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETPIVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFNSMVAAYTGWKDARNDPVKAVTFGDGDE-DWEIKKECI 286
E+ V++PQQKHYN G+ FPAVLSPNP N+T+ S + Q IK SLL ++GAILF+GFPV SASDFND VEAFG+ ELPYVGGAAPR+NVVGRVFTANESPPDQKIPFHHEMAQVPE+P+KLFFFC+VEPGSGGETPIVLSH++YE+MK+KYPDFVE+LE+ GLIY RVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEW+ED VKT+MGPIP IK+++ER++KIWFNSMVAAYTGWKDARNDPVKAVTFGDG E+ +C+
Sbjct: 2 AENFLTQVEIPQQKHYN-GVPFPAVLSPNP----NSTI--SQLPQIIKEQKPWFGSLLQQSGAILFRGFPVNSASDFNDAVEAFGYEELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMAQVPEYPSKLFFFCDVEPGSGGETPIVLSHVVYEKMKNKYPDFVERLEEHGLIYIRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWIEDGVKTVMGPIPGIKFNQERRQKIWFNSMVAAYTGWKDARNDPVKAVTFGDGQPLPAEVIHDCL 279
Match: A0A5B7CBV1 (TauD domain-containing protein {ECO:0000259|Pfam:PF02668})
HSP 1 Score: 448.743 bits (1153), Expect = 3.538e-153
Identity = 212/272 (77.94%), Postives = 240/272 (88.24%), Query Frame = 0
Query: 4 ESLFIPVKLPQQKHYNNGITFPAVLSPNPEKLSNNTVPFSSVLQAIKSSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETPIVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFNSMVAAYTGWKDARNDPVKAVTFGDG 275
ES F + +P Q+ YN+G+ FP VLSPNP ++ S + + IK+ L+SLL +TGAILF+GFPV +AS+FNDVVEAF F ELPYVGGAAPR+NVVGRVFTANESPPDQKIPFHHEMAQVPEFP+KLFFFCEVEPGS GETPIVLSHI+YE+MK++YP+FVE+LE+ GLIYTRVLGEDDDPSSPIGRGWKSTFLT+DKSVAEERAAKLGM+LEWMED VK+IMGPIPAIK DK RQRKIWFNSMVAAYTGW+DARNDPVKAVTFGDG
Sbjct: 3 ESFFTEITIPHQRTYNSGVLFPTVLSPNPNTVTQ-PCNLSLLTEEIKAHKPWLQSLLHKTGAILFRGFPVTTASNFNDVVEAFDFDELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSEGETPIVLSHIVYEKMKERYPEFVERLEEHGLIYTRVLGEDDDPSSPIGRGWKSTFLTEDKSVAEERAAKLGMELEWMEDGVKSIMGPIPAIKLDKTRQRKIWFNSMVAAYTGWEDARNDPVKAVTFGDG 273
Match: A0A2I4GHA2 ((clavaminate synthase-like protein At3g21360 {ECO:0000313|RefSeq:XP_018843274.1}))
HSP 1 Score: 449.129 bits (1154), Expect = 5.964e-153
Identity = 210/269 (78.07%), Postives = 239/269 (88.85%), Query Frame = 0
Query: 7 FIPVKLPQQKHYNNGITFPAVLSPNPEKLSNNTVPFSSVLQAIKSSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETPIVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFNSMVAAYTGWKDARNDPVKAVTFGDG 275
F+ +P QK YN G+ FP+V+SPNP N P + QA+++ L+SLL +GA+LF+GFPV +ASDFN+ VEAFGF ELPYVGGAAPR+NVVGRVFTANESPPDQKIPFHHEMAQVPEFP+KLFFFCEVEPGSGGETPIVLSHI+YERMK+KYP+FVE+LE+ GL+YTRVLGEDDDPSSPIGRGWKSTFLT+DKSVAE+RAAKLGM +EW+ED+VKTIMGPIPAIKYDK RQRKIWFNSMVAAYTGW+DARNDPVKAVTFGDG
Sbjct: 42 FLETLIPHQKFYN-GVQFPSVVSPNPR----NPFPLPLLTQAVRNEKPLLDSLLRNSGALLFRGFPVKTASDFNEFVEAFGFEELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKEKYPEFVERLEEHGLLYTRVLGEDDDPSSPIGRGWKSTFLTEDKSVAEQRAAKLGMTMEWLEDAVKTIMGPIPAIKYDKTRQRKIWFNSMVAAYTGWEDARNDPVKAVTFGDG 305
Match: A0A1R3H873 ((Taurine catabolism dioxygenase TauD/TfdA {ECO:0000313|EMBL:OMO66545.1}))
HSP 1 Score: 446.047 bits (1146), Expect = 3.718e-152
Identity = 216/270 (80.00%), Postives = 239/270 (88.52%), Query Frame = 0
Query: 7 FIPVKLP-QQKHYNNGITFPAVLSPNPEKLSNNTVPFSSVLQAIKSSAAALESLLSETGAILFKGFPVVSASDFNDVVEAFGFLELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPEFPAKLFFFCEVEPGSGGETPIVLSHIIYERMKDKYPDFVEKLEDTGLIYTRVLGEDDDPSSPIGRGWKSTFLTKDKSVAEERAAKLGMKLEWMEDSVKTIMGPIPAIKYDKERQRKIWFNSMVAAYTGWKDARNDPVKAVTFGDG 275
FI +LP QKHYN+ TFP+VL+PNP +++ P S + IKS L+SLL + GAILF+GFPV +A DFNDVVEAFGF ELPYVGGAAPR+NVVGRVFTANESPPDQKIPFHHEMAQVPEFP+KLFFFCEVEPGSGGETPIVLSHIIYERMK+KYP+FV +LE+ GL+YTRVLGE DDPSSPIGRGWKSTFLT DKSVAEERAAKLGMKLEW+ED VK+IMGPIPA+KYDK RQRKIWFNSMVAAYTGW+DARNDPVKAVTFGDG
Sbjct: 8 FIETQLPNHQKHYNS-FTFPSVLTPNP---ASSPSPLSLFTKEIKSQKPFLDSLLLKAGAILFRGFPVQTAKDFNDVVEAFGFEELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIIYERMKEKYPEFVSRLEEHGLLYTRVLGEGDDPSSPIGRGWKSTFLTTDKSVAEERAAKLGMKLEWIEDGVKSIMGPIPAVKYDKSRQRKIWFNSMVAAYTGWEDARNDPVKAVTFGDG 273
| Match Name | Stats | Description |
|---|---|---|
| A0A834TRJ5 | E-Value: 3.534e-154, PID: 66.27 | (Clavaminate synthase-like protein {ECO:0000313|EM... [more] |
| A0A068TPK0 | E-Value: 8.246e-154, PID: 78.55 | TauD domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A1S4AIX7 | E-Value: 1.049e-153, PID: 74.92 | (clavaminate synthase-like protein At3g21360 {ECO:... [more] |
| A0A5J5BD95 | E-Value: 1.696e-153, PID: 79.78 | TauD domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A1J6J600 | E-Value: 1.869e-153, PID: 75.79 | (Clavaminate synthase-like protein {ECO:0000313|EM... [more] |
| A0A1U7X365 | E-Value: 2.736e-153, PID: 75.79 | (clavaminate synthase-like protein At3g21360 {ECO:... [more] |
| A0A1S3XZ38 | E-Value: 2.736e-153, PID: 75.79 | (clavaminate synthase-like protein At3g21360 {ECO:... [more] |
| A0A5B7CBV1 | E-Value: 3.538e-153, PID: 77.94 | TauD domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A2I4GHA2 | E-Value: 5.964e-153, PID: 78.07 | (clavaminate synthase-like protein At3g21360 {ECO:... [more] |
| A0A1R3H873 | E-Value: 3.718e-152, PID: 80.00 | (Taurine catabolism dioxygenase TauD/TfdA {ECO:000... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |