Resource Type:
Polypeptide
Name:
DCAR_025538
Identifier:
DCAR_025538.mRNA-protein
Sequence:
MEEEEALNHGPQVQKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVI
IVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVW
GILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAG
SAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGF
LVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGR
AMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVI
GSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVL
RINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFA
LLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIG
LLFLIPTGDPSENILPSEMLTPKKADTMISENMEMASLITGT*
Sequence Length:
493
Sequence Checksum:
a0820d5e0c7a2eddf7b337a259e6e469
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_025538, derives from mRNA, DCAR_025538. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BAX3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1002841.1}))
HSP 1 Score: 938.332 bits (2424), Expect = 0.000e+0
Identity = 456/490 (93.06%), Postives = 475/490 (96.94%), Query Frame = 0
Match: A0A6L5BAX3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1002841.1}))
HSP 1 Score: 938.332 bits (2424), Expect = 0.000e+0
Identity = 456/490 (93.06%), Postives = 475/490 (96.94%), Query Frame = 0
Query: 1 MEEEEALNHGPQVQKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGFLVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGRAMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVIGSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIGLLFLIPTGDPSENILPSEMLTPKKADTMISENMEMASLIT 490
MEEEEALN QVQ+EKKQKEG+LGLIMGP+YWF+MLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKD QKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYF+FAGVIGVAAML LALH NLTLTFAIL L+AGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSS+TGALVGFLISGFL+HI+GPKGVF ILAIPCGLV+LVG+ILREPRVH VGYRRVNQK MDAGRAMW+ALKSR IWRPCLYMYISLAVSINIHEGMFYWYTDAK GPSFSQEVIGSVFSVGAVGSLVGV+LYQN+FKSHPFRQVLFWSQLLYCASGLLEL+LVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRS LRLLPIGLLFLIPTGDP+ENILPSEMLTPKKAD+M SEN+EMASL+
Sbjct: 1 MEEEEALNQDSQVQREKKQKEGLLGLIMGPIYWFKMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDEQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFVFAGVIGVAAMLMLALHNNLTLTFAILCLIAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSATGALVGFLISGFLLHIIGPKGVFAILAIPCGLVILVGLILREPRVHGVGYRRVNQKFMDAGRAMWSALKSRDIWRPCLYMYISLAVSINIHEGMFYWYTDAKNGPSFSQEVIGSVFSVGAVGSLVGVILYQNVFKSHPFRQVLFWSQLLYCASGLLELVLVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSFLRLLPIGLLFLIPTGDPNENILPSEMLTPKKADSMNSENLEMASLVN 490
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZAX7 ((Putative folate-biopterin transporter 3 {ECO:0000313|EMBL:MPA41432.1}))
HSP 1 Score: 757.288 bits (1954), Expect = 0.000e+0
Identity = 362/493 (73.43%), Postives = 428/493 (86.82%), Query Frame = 0
Match: A0A5B6ZAX7 ((Putative folate-biopterin transporter 3 {ECO:0000313|EMBL:MPA41432.1}))
HSP 1 Score: 757.288 bits (1954), Expect = 0.000e+0
Identity = 362/493 (73.43%), Postives = 428/493 (86.82%), Query Frame = 0
Query: 1 MEEEEALNHGPQVQKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGFLVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGRAMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVIGSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIGLLFLIPTGDPSENILPSEMLTPKKA-DTMISENMEMASLITGT 492
M E+E+L Q QKEK+ KEG+LG I+ P+YWFRML EL W FV GV+IVYGINQG+++GL++VS QYYMKD QK+QPSEAQVY G++QIPWI+KP+WG+LTD +PI GYRRRPYF+FAG +GV +ML L+LH+ L L A+LSLMAGSAGVAIADVTIDAC+TE SISHPSLAGDMQSLCGVSSS GAL+GF +SGFLVH +G KGVFG+L IP GLV+LVGM+LREP V S YRRVN+K +DAG++MWTALK R +WRPCLYMY+SLA+ +NIHEGMFYWYTDAK GPSFSQEV+GS+ SVGAVGSL GVLLYQN+FK+HPFRQVLFW+QLLY ASG+L+LILVLRINLR GVPD+LF V D +IGRLKWMP+LVLSSKLCPSGIEGTFFALLMSIDHVG+L+SSWAGGL+LHILN+TRTQF+NLW+A+LIR++LR+LPI LLFL+P DP+ +ILP+EML KK DT+ S NMEMASL+ T
Sbjct: 1 MVEQESLQIEGQTQKEKRLKEGLLGYILRPIYWFRMLADELHWRFVLGVVIVYGINQGLSMGLSRVSTQYYMKDEQKVQPSEAQVYSGIIQIPWIVKPLWGLLTDTVPIIGYRRRPYFVFAGFLGVISMLMLSLHEKLHLASALLSLMAGSAGVAIADVTIDACITEKSISHPSLAGDMQSLCGVSSSIGALMGFSVSGFLVHQIGSKGVFGVLCIPAGLVILVGMMLREPLVRSFAYRRVNEKFLDAGKSMWTALKCRDVWRPCLYMYLSLALGLNIHEGMFYWYTDAKEGPSFSQEVVGSILSVGAVGSLFGVLLYQNVFKNHPFRQVLFWAQLLYGASGMLDLILVLRINLRLGVPDYLFAVIDVAASHMIGRLKWMPLLVLSSKLCPSGIEGTFFALLMSIDHVGMLSSSWAGGLILHILNVTRTQFENLWMAVLIRNLLRILPIALLFLVPKSDPNTSILPTEMLRTKKGDDTLESRNMEMASLVNST 493
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9W2L6 ((Uncharacterized protein {ECO:0000313|EMBL:OAY52669.1}))
HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0
Identity = 350/482 (72.61%), Postives = 420/482 (87.14%), Query Frame = 0
Match: A0A2C9W2L6 ((Uncharacterized protein {ECO:0000313|EMBL:OAY52669.1}))
HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0
Identity = 350/482 (72.61%), Postives = 420/482 (87.14%), Query Frame = 0
Query: 12 QVQKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGFLVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGRAMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVIGSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIGLLFLIPTGDPSENILPSEMLTPKKADTMISE-NMEMASLITGT 492
+ Q EK E L L++ P++WF+MLG+EL WSFV GV+IVYGI+QG+ +GL+KVS QYYMKD QK+QPSEAQVY GL+QIPWIIKP+WG+LTD +PI GYRRRPYF+FAG + + AML ++L KNL L FA+LSLMAGSAG+AIADVTIDACVT+NSISHPSLAGDMQSLCG SSS GALVGF +SGFLVHIVGPKGVFG+L+IP GLV+LVG++LRE R H + YR VN+K +DAG+AMWT LK R +WRPCLYMY+SLAVS++IHEGMFYWYTDAK GPSFSQEV+GS+FS+GAVGSL GVL+YQN+ K+HPFR +LFWSQLLY SGLL+LILVLRINLR G+PD+LFVV DE ++IGR+KWMP+LVLSSKLCP+GIEGTFFALLMSIDHVG+L+S+WAGGLLLH+L +TRT+F+NLW+AILIRSILR++PIGLLFLIP DP+ ILP+EML KK D M+ N+EMASL+ +
Sbjct: 3 ESQIEKSPNEEFLRLMLRPLHWFKMLGQELHWSFVLGVVIVYGISQGLGVGLSKVSTQYYMKDEQKVQPSEAQVYFGLLQIPWIIKPLWGLLTDTLPILGYRRRPYFVFAGFLSMIAMLVVSLQKNLHLAFAMLSLMAGSAGIAIADVTIDACVTQNSISHPSLAGDMQSLCGFSSSIGALVGFSLSGFLVHIVGPKGVFGLLSIPAGLVILVGIMLRESRAHRLAYRGVNEKFLDAGKAMWTTLKCREVWRPCLYMYLSLAVSLHIHEGMFYWYTDAKGGPSFSQEVVGSIFSIGAVGSLCGVLIYQNLLKNHPFRDLLFWSQLLYGVSGLLDLILVLRINLRIGLPDYLFVVIDEAISRMIGRIKWMPLLVLSSKLCPAGIEGTFFALLMSIDHVGMLSSTWAGGLLLHVLKVTRTRFENLWMAILIRSILRMVPIGLLFLIPRSDPNLAILPAEMLKTKKGDDMLENGNLEMASLVDSS 484
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6RVA4 ((Putative folate-biopterin transporter, major facilitator superfamily domain-containing protein {ECO:0000313|EMBL:PRQ50354.1}))
HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 344/490 (70.20%), Postives = 424/490 (86.53%), Query Frame = 0
Match: A0A2P6RVA4 ((Putative folate-biopterin transporter, major facilitator superfamily domain-containing protein {ECO:0000313|EMBL:PRQ50354.1}))
HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 344/490 (70.20%), Postives = 424/490 (86.53%), Query Frame = 0
Query: 2 EEEEALNHGPQVQKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGFLVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGRAMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVIGSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIGLLFLIPTGDPSENILPSEMLTPKKADTMISENMEMASLITG 491
+E EAL+H Q +KEK +G+ L+ P+ WF+ML EL WSFV V+IVYGI+QG+++GL+++SIQYY+KD QK+QPSEAQVYLG++QIPW++KP+WG+ TD +PI GYRR+PYF+FAGVIGV +ML L+L K L LT ++LSLM GSAGVAIADVTIDACVTENSISHPSLAGDMQSLCG++SS GALVGF +SGF VH++GPKGVFG+L+IP GLV+ VGM+LRE +HS +RRV++K +D+G+AMWT LK +WRPCLYMY+SLA+S+++ EGMFYWYTDAK GP+FS+EV+GS+FS+GA+GSL GVLLYQN KS+PFR VLFW+QLLY SGLL+L+ VLRINL+ G+PD+LFVV DE ++IGRLKWMP+LVLSSKLCP+GIEGTFFALLMSIDHVGIL+S+WAGGLLLHILNITRTQF+NLW+AILIRSILR+LPI LLFLIP DP+ +ILPSEML KK D + SEN+EMASL+ G
Sbjct: 8 QEREALHHEAQNKKEKFSVQGLWDLLWSPINWFKMLSSELHWSFVISVVIVYGISQGLSMGLSRISIQYYLKDEQKVQPSEAQVYLGIIQIPWMVKPLWGLFTDTLPILGYRRKPYFVFAGVIGVVSMLVLSLDKKLDLTMSLLSLMVGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGLTSSVGALVGFSLSGFFVHLLGPKGVFGLLSIPPGLVIFVGMMLRESHLHSFSHRRVSEKFLDSGKAMWTTLKCSSVWRPCLYMYLSLALSLSVREGMFYWYTDAKGGPTFSKEVVGSIFSIGALGSLFGVLLYQNFLKSYPFRDVLFWTQLLYGISGLLDLVFVLRINLKLGLPDYLFVVIDEAVSQMIGRLKWMPLLVLSSKLCPAGIEGTFFALLMSIDHVGILSSTWAGGLLLHILNITRTQFENLWMAILIRSILRILPIALLFLIPRTDPNSSILPSEMLRTKKGDDLESENLEMASLVNG 497
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HBY6 ((Uncharacterized protein {ECO:0000313|EMBL:CCB49719.1}))
HSP 1 Score: 737.643 bits (1903), Expect = 0.000e+0
Identity = 343/493 (69.57%), Postives = 417/493 (84.58%), Query Frame = 0
Match: F6HBY6 ((Uncharacterized protein {ECO:0000313|EMBL:CCB49719.1}))
HSP 1 Score: 737.643 bits (1903), Expect = 0.000e+0
Identity = 343/493 (69.57%), Postives = 417/493 (84.58%), Query Frame = 0
Query: 1 MEEEEALNHGPQVQKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGFLVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGRAMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVIGSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIGLLFLIPTGDPSENILPSEMLTPKKADTMI-SENMEMASLITGT 492
+EE E L H + K K K I PVYWFRMLG EL WSFV V+IVYG+NQG+++GL++VS QYYMKD QK+QPSEAQV+ G++Q+PW+IKP+WG+LTD++PI GYRRRPYF+FAG +GV +ML+LALHK + L A+LSLM GSAGVAIADVTIDACV +NSISHPSLAGDMQSLCG+SSS GALVG+ +SGFLVH VGPKGVFG+L++P GLV+LVGM LREP VH+ YRRVNQK +DA +AMWT LK R +WRPCLYMY+SLAVS+N+ EGMFYWYTDAK GPSFS+EV+GS+FSVGAVGSL+GVLLYQN+ K+HPFR +LFW+QLLY SG+L+LILVLRINL+ G+ D+ F V DE +IGR+KWMP+LVLSSKLCP GIEGTFFALLMSID+VG+L+SSWAGGLLLH+L +TRTQFDNLWL+ILIRS+ R++P+GLLFL+P DP+ +ILP+EML KK D + S+N+EMA L+ GT
Sbjct: 4 VEETETLKHQEETHKRKNPKVVFWNFIWRPVYWFRMLGDELHWSFVLSVVIVYGMNQGLSVGLSRVSTQYYMKDEQKVQPSEAQVFFGMIQLPWVIKPLWGLLTDILPIIGYRRRPYFIFAGFLGVISMLSLALHKKMHLVLALLSLMTGSAGVAIADVTIDACVAQNSISHPSLAGDMQSLCGLSSSIGALVGYSLSGFLVHFVGPKGVFGVLSVPAGLVILVGMFLREPHVHNFSYRRVNQKFLDACKAMWTTLKCREVWRPCLYMYLSLAVSLNVREGMFYWYTDAKGGPSFSKEVVGSIFSVGAVGSLLGVLLYQNVLKNHPFRDILFWTQLLYGLSGMLDLILVLRINLKLGISDYFFAVIDEAVTHMIGRVKWMPLLVLSSKLCPPGIEGTFFALLMSIDNVGMLSSSWAGGLLLHVLEVTRTQFDNLWLSILIRSMFRIIPLGLLFLVPRSDPNLSILPTEMLRTKKGDDIPESDNIEMAPLVNGT 496
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1CTN5 ((Transporter {ECO:0000313|EnsemblPlants:PGSC0003DMT400074434}))
HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0
Identity = 335/491 (68.23%), Postives = 419/491 (85.34%), Query Frame = 0
Match: M1CTN5 ((Transporter {ECO:0000313|EnsemblPlants:PGSC0003DMT400074434}))
HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0
Identity = 335/491 (68.23%), Postives = 419/491 (85.34%), Query Frame = 0
Query: 1 MEEEEALNHGPQVQKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGFLVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGRAMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVIGSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIGLLFLIPTGDPSENILPSEMLTPKKADTMI-SENMEMASLIT 490
M +E+A++ Q+ ++KK K+ IL LI YW R L EL WSFV V+I+YGINQG+++G++++S QYYMKD QKLQPSEAQVY GL+Q+PW++KP+WG+LTD +PI GYRRRPYF+ G IGV AML+L++++NL L FA+L LMAGSAGVAIADVTIDACVTENSISHPSLA DMQSLCG+SSS G L+G+ ISG LVH++G KGVFG+L+IP GLV+LVGM+ RE VH+V Y+R +QK MDAG+AMW ALK ++WRPC+YMYISLA+S +IHEGMFYWYTDAK GPSFS+E++GS+ SVGAVGSL+GVLLYQN FK+HPFR VLFW+QLLY ASGL++LILV R+NL+FG+PD++ VV D F +IGRLKWMP+LVLSSKLCPSGIEGTFFALLMSIDH+G+LT+SW GGLLLH N+TRTQFDNLW+ I+IRSILR+LP+ +LFLIP+ DP+ +ILP+EML KKAD M+ +++MEMA L++
Sbjct: 1 MGQEDAVSFEGQLHRDKKPKDRILDLISRQFYWLRKLTDELHWSFVSSVVILYGINQGMSLGMSRISTQYYMKDEQKLQPSEAQVYFGLIQLPWVVKPLWGLLTDTLPILGYRRRPYFILGGFIGVVAMLSLSINQNLHLAFALLCLMAGSAGVAIADVTIDACVTENSISHPSLASDMQSLCGLSSSVGQLIGYAISGVLVHLIGSKGVFGVLSIPAGLVILVGMMTREAHVHNVAYKRASQKFMDAGKAMWMALKCENVWRPCIYMYISLALSFHIHEGMFYWYTDAKDGPSFSKEMVGSISSVGAVGSLLGVLLYQNAFKNHPFRGVLFWTQLLYGASGLVDLILVSRVNLKFGIPDYVVVVSDAAFSHMIGRLKWMPLLVLSSKLCPSGIEGTFFALLMSIDHIGMLTASWGGGLLLHAFNVTRTQFDNLWIVIVIRSILRVLPVFILFLIPSSDPNASILPTEMLKSKKADDMLENQSMEMAPLVS 491
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4C3U4 ((probable folate-biopterin transporter 3 isoform X2 {ECO:0000313|RefSeq:XP_016495800.1}))
HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0
Identity = 336/491 (68.43%), Postives = 417/491 (84.93%), Query Frame = 0
Match: A0A1S4C3U4 ((probable folate-biopterin transporter 3 isoform X2 {ECO:0000313|RefSeq:XP_016495800.1}))
HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0
Identity = 336/491 (68.43%), Postives = 417/491 (84.93%), Query Frame = 0
Query: 1 MEEEEALNHGPQVQKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGFLVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGRAMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVIGSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIGLLFLIPTGDPSENILPSEMLTPKKADTMI-SENMEMASLIT 490
M +E L Q+Q+EKK K ILGLI+ P YW L +EL WSFV V+IVYGINQG+++GL+K+S QYYMKD QKLQPSEAQ+Y G++Q+PW++KP+WG+LTD +PI GYRRRPYF+ G IGV AML+L++++NL L FA+L LMAGSAGVAIADVTIDACVTEN ISHPSLA DMQSLCG+SSS G L+GF ISGFLVH++G KGVFGIL+IP GLV+LVGM+ RE V +V Y+RV+QK DAG+AMW ALK + +WRPC+YMY+SLA+S +IHEGMFYWYTDAK GPSFS+E++GS+ SVGAVGSL+GVLLYQN FK+HPFR VLFW+QLLY ASGL++LILV R+NL+FG+PD++ VV D F +IGRLKWMP+LVLSSKLCPSGIEGTFFALLMSIDH+G+LT+SW GGLLLH N+TRTQFDNLW+ I+IRS LR+LP+ +LFL+P+ DP+ +ILP+EML KK D ++ ++NME+ASL++
Sbjct: 1 MGQEGTLLLDGQLQREKKTKNRILGLILRPFYWLGKLSEELHWSFVSAVVIVYGINQGMSLGLSKISTQYYMKDEQKLQPSEAQIYFGIIQLPWVVKPLWGLLTDTLPILGYRRRPYFMLGGFIGVVAMLSLSINQNLHLAFALLCLMAGSAGVAIADVTIDACVTENRISHPSLASDMQSLCGLSSSVGQLIGFGISGFLVHLIGSKGVFGILSIPAGLVILVGMMSRETYVPNVAYKRVSQKFSDAGKAMWMALKCQSVWRPCIYMYVSLALSFHIHEGMFYWYTDAKDGPSFSKEMVGSISSVGAVGSLLGVLLYQNAFKNHPFRSVLFWTQLLYGASGLVDLILVSRVNLKFGIPDYVVVVSDAAFSHMIGRLKWMPLLVLSSKLCPSGIEGTFFALLMSIDHIGMLTASWGGGLLLHTFNVTRTQFDNLWIVIVIRSCLRILPVCILFLVPSSDPNASILPTEMLKSKKGDDIVENQNMEVASLVS 491
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540LTD9 ((Uncharacterized protein {ECO:0000313|EMBL:TQD89774.1}))
HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 336/480 (70.00%), Postives = 418/480 (87.08%), Query Frame = 0
Match: A0A540LTD9 ((Uncharacterized protein {ECO:0000313|EMBL:TQD89774.1}))
HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 336/480 (70.00%), Postives = 418/480 (87.08%), Query Frame = 0
Query: 14 QKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGFLVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGRAMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVIGSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIGLLFLIPTGDPSENILPSEMLTPKKA-DTMISENMEMASLITGT 492
QK+K +G+ L+ P+ WFRML EL WSFV GV+IVYGI+QG+++GL+++SIQYY+KD QK+QPSEAQVY G++QIPWI+KP WG+LTD +P+ GYRR+PYF+FAG++GV +ML L+L KNL LT ++L+LMAGSAGVAIADVTIDACVT+NSI HPSLAGDMQSLCG+SSS GALVGF +SGFLVH+VGPKGVFG+L+IP GLV+LVG+I RE RV + Y++V+ K++DAG+AMWT LK +WRPCLYMY+SLA+++N+ EGMFYWYTDAK GPSF++EV+GS+FS+GAVGSL GVLLYQN KS+PFR VLFW+QLLY ASG+L+L+LVLRINL+FG+PD+LFVV DE +IGRLKWMP+LVLSSKLCP+GIEGTFFA+LMSIDH+G+L+S+WAGGLLLHILNITRTQF+N+W+AILIRS+LR++PI LLFLIP DP+ ILPSEML KKA D E +EM+SL+ GT
Sbjct: 20 QKQKTPVKGVRDLLWTPINWFRMLSSELHWSFVVGVLIVYGISQGLSMGLSRISIQYYLKDDQKVQPSEAQVYFGIIQIPWIVKPFWGLLTDTLPVLGYRRKPYFVFAGLLGVISMLVLSLDKNLNLTMSLLALMAGSAGVAIADVTIDACVTQNSIRHPSLAGDMQSLCGLSSSVGALVGFSLSGFLVHLVGPKGVFGLLSIPPGLVILVGIIHRESRVRNFAYKQVSVKLLDAGKAMWTTLKCSSVWRPCLYMYLSLALALNVREGMFYWYTDAKGGPSFTKEVVGSIFSIGAVGSLFGVLLYQNFLKSYPFRDVLFWTQLLYGASGMLDLVLVLRINLKFGLPDYLFVVIDEGISMLIGRLKWMPLLVLSSKLCPAGIEGTFFAILMSIDHIGMLSSTWAGGLLLHILNITRTQFENIWMAILIRSLLRIVPIALLFLIPRSDPNLTILPSEMLRTKKANDVHEYETLEMSSLLNGT 499
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3XR46 ((probable folate-biopterin transporter 3 {ECO:0000313|RefSeq:XP_016442335.1}))
HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0
Identity = 338/491 (68.84%), Postives = 417/491 (84.93%), Query Frame = 0
Match: A0A1S3XR46 ((probable folate-biopterin transporter 3 {ECO:0000313|RefSeq:XP_016442335.1}))
HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0
Identity = 338/491 (68.84%), Postives = 417/491 (84.93%), Query Frame = 0
Query: 1 MEEEEALNHGPQVQKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGFLVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGRAMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVIGSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIGLLFLIPTGDPSENILPSEMLTPKKADTMI-SENMEMASLIT 490
M +E + Q+ ++KK K ILGLI+ P YW L +EL WSFV V+IVYGINQG+++GL+K+S QYYMKD QKLQPSEAQ+Y G++Q+PWI+KP+WG+LTD +PI GYRRRPYF+ G IGV AML+L++++NL L FA+L LMAGSAGVAIADVTIDACVTENSISHPSLA DMQSLCG+SSS G L+GF ISGFLVH++G KGVFGIL+IP GLV+LVGM+ RE V +V Y+RV+QK DAG+AMW ALK + +WRPC+YMYISLA+S +IHEGMFYWYTDAK GPSFS+E++GS+ SVGAVGSL+GVLLYQN FK+HPFR VLFW+QLLY ASGL++LILV R+NL+FG+PD++ VV D F +IGRLKWMP+LVLSSKLCPSGIEGTFFALLMSIDH+G+LT+SW GGLLLH N+TRTQFDNLW+ I+IRS LR+LP+ +LFLIP+ DP+ +ILP+EML KK D ++ ++NMEMASL++
Sbjct: 1 MGQEGTILLDGQLHRDKKPKNRILGLILRPFYWLGKLSEELHWSFVSAVVIVYGINQGMSLGLSKISTQYYMKDEQKLQPSEAQIYFGIIQLPWIVKPLWGLLTDTLPILGYRRRPYFMLGGFIGVVAMLSLSINQNLHLAFALLCLMAGSAGVAIADVTIDACVTENSISHPSLASDMQSLCGLSSSVGQLIGFGISGFLVHLIGSKGVFGILSIPAGLVILVGMMSRETYVPNVAYKRVSQKFSDAGKAMWMALKCQSVWRPCIYMYISLALSFHIHEGMFYWYTDAKDGPSFSKEMVGSISSVGAVGSLLGVLLYQNAFKNHPFRSVLFWTQLLYGASGLVDLILVSRVNLKFGIPDYVVVVSDAAFSHMIGRLKWMPLLVLSSKLCPSGIEGTFFALLMSIDHIGMLTASWGGGLLLHTFNVTRTQFDNLWIVIVIRSCLRILPVCILFLIPSSDPNASILPTEMLKSKKGDDIVENQNMEMASLVS 491
BLAST of DCAR_025538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WIP7 ((probable folate-biopterin transporter 3 {ECO:0000313|RefSeq:XP_009774529.1}))
HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 337/491 (68.64%), Postives = 416/491 (84.73%), Query Frame = 0
Match: A0A1U7WIP7 ((probable folate-biopterin transporter 3 {ECO:0000313|RefSeq:XP_009774529.1}))
HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 337/491 (68.64%), Postives = 416/491 (84.73%), Query Frame = 0
Query: 1 MEEEEALNHGPQVQKEKKQKEGILGLIMGPVYWFRMLGKELKWSFVCGVIIVYGINQGVAIGLNKVSIQYYMKDVQKLQPSEAQVYLGLVQIPWIIKPVWGILTDVIPIAGYRRRPYFLFAGVIGVAAMLTLALHKNLTLTFAILSLMAGSAGVAIADVTIDACVTENSISHPSLAGDMQSLCGVSSSTGALVGFLISGFLVHIVGPKGVFGILAIPCGLVVLVGMILREPRVHSVGYRRVNQKVMDAGRAMWTALKSRHIWRPCLYMYISLAVSINIHEGMFYWYTDAKAGPSFSQEVIGSVFSVGAVGSLVGVLLYQNIFKSHPFRQVLFWSQLLYCASGLLELILVLRINLRFGVPDFLFVVFDEFFHKIIGRLKWMPILVLSSKLCPSGIEGTFFALLMSIDHVGILTSSWAGGLLLHILNITRTQFDNLWLAILIRSILRLLPIGLLFLIPTGDPSENILPSEMLTPKKADTMI-SENMEMASLIT 490
M +E + Q+ ++KK K ILGLI+ P YW L +EL WSFV V+IVYGINQG+++GL+K+S QYYMKD QKLQPSEAQ+Y G++Q+PWI+KP+WG+LTD +PI GYRRRPYF+ G IGV AML+L++++NL L FA+L LMAGSAGVAIADVTIDACVTENSISHPSLA DMQSLCG+SSS G L+GF ISGFLVH++G KGVFGIL+IP GLV+LVGM+ RE V +V Y+RV+QK DAG+AMW ALK + +WRPC+YMYISLA+S +IHEGMFYWYTDAK GP FS+E++GS+ SVGAVGSL+GVLLYQN FK+HPFR VLFW+QLLY ASGL++LILV R+NL+FG+PD++ VV D F +IGRLKWMP+LVLSSKLCPSGIEGTFFALLMSIDH+G+LT+SW GGLLLH N+TRTQFDNLW+ I+IRS LR+LP+ +LFLIP+ DP+ +ILP+EML KK D ++ ++NMEMASL++
Sbjct: 1 MGQEGTILLDGQLHRDKKPKNRILGLILRPFYWLGKLSEELHWSFVSAVVIVYGINQGMSLGLSKISTQYYMKDEQKLQPSEAQIYFGIIQLPWIVKPLWGLLTDTLPILGYRRRPYFMLGGFIGVVAMLSLSINQNLHLAFALLCLMAGSAGVAIADVTIDACVTENSISHPSLASDMQSLCGLSSSVGQLIGFGISGFLVHLIGSKGVFGILSIPAGLVILVGMMSRETYVPNVAYKRVSQKFSDAGKAMWMALKCQSVWRPCIYMYISLALSFHIHEGMFYWYTDAKDGPYFSKEMVGSISSVGAVGSLLGVLLYQNAFKNHPFRSVLFWTQLLYGASGLVDLILVSRVNLKFGIPDYVVVVSDAAFSHMIGRLKWMPLLVLSSKLCPSGIEGTFFALLMSIDHIGMLTASWGGGLLLHTFNVTRTQFDNLWIVIVIRSCLRILPVCILFLIPSSDPNASILPTEMLKSKKGDDIVENQNMEMASLVS 491
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5BAX3 | E-Value: 0.000e+0, PID: 93.06 | (Uncharacterized protein {ECO:0000313|EMBL:KAF1002... [more] |
| A0A5B6ZAX7 | E-Value: 0.000e+0, PID: 73.43 | (Putative folate-biopterin transporter 3 {ECO:0000... [more] |
| A0A2C9W2L6 | E-Value: 0.000e+0, PID: 72.61 | (Uncharacterized protein {ECO:0000313|EMBL:OAY5266... [more] |
| A0A2P6RVA4 | E-Value: 0.000e+0, PID: 70.20 | (Putative folate-biopterin transporter, major faci... [more] |
| F6HBY6 | E-Value: 0.000e+0, PID: 69.57 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4971... [more] |
| M1CTN5 | E-Value: 0.000e+0, PID: 68.23 | (Transporter {ECO:0000313|EnsemblPlants:PGSC0003DM... [more] |
| A0A1S4C3U4 | E-Value: 0.000e+0, PID: 68.43 | (probable folate-biopterin transporter 3 isoform X... [more] |
| A0A540LTD9 | E-Value: 0.000e+0, PID: 70.00 | (Uncharacterized protein {ECO:0000313|EMBL:TQD8977... [more] |
| A0A1S3XR46 | E-Value: 0.000e+0, PID: 68.84 | (probable folate-biopterin transporter 3 {ECO:0000... [more] |
| A0A1U7WIP7 | E-Value: 0.000e+0, PID: 68.64 | (probable folate-biopterin transporter 3 {ECO:0000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |