Resource Type:
Polypeptide
Name:
DCAR_023575
Identifier:
DCAR_023575.mRNA-protein
Sequence:
MEDLYGDEGGLTVAREMSAGESGGNARFPASEVTPAPLTVSASFREGRSS
SRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQA
EIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDE
KKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAK
LQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQI
EICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQR
KVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKGEMQQLRDKL
VITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNGRRQ
SLGGVDNISKLTSNGFLPRRSPSFQLRSSGTSTVLKHAKGTSKSFDGGTR
SLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPE
KEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTK
AMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQML
PARSKCSLSLS*
Sequence Length:
612
Sequence Checksum:
381d70a38138438197ff455b40c422c0
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_023575, derives from mRNA, DCAR_023575. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5B8J5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1001981.1}))
HSP 1 Score: 1132.86 bits (2929), Expect = 0.000e+0
Identity = 574/619 (92.73%), Postives = 587/619 (94.83%), Query Frame = 0
Match: A0A6L5B8J5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1001981.1}))
HSP 1 Score: 1132.86 bits (2929), Expect = 0.000e+0
Identity = 574/619 (92.73%), Postives = 587/619 (94.83%), Query Frame = 0
Query: 1 MEDLYGDEGGLTVAREMSAGESGGNARFPASEVTPAPLTVSASFREGRSSSRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK---------------GEMQQLRDKLVITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNGRRQSLGGVDNISKLTSNGFLPRRSPSFQLRSSGTSTVLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPEKEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQMLPARS 604
MED+YG+EGGLTVAREMS G+SGGNARF ASEVTP PLTVSASFREGRSSSRRRAP RPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDREL EAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKL QTVHELEEAVLAGGATANVVRDYQRKVQEM EERKTLDRELARAKVTANRVA+VVANEWKDANDK GEMQQLRDKLVI+ERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNGRRQSLGG DNISKLTSNGFLPRR PSFQLRSSGT+T+LKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEE KASET NSNWKA+ DEKP D T PEKEDTVPGLLHD+LQKEVIALRKAG+EKDQSLKDKDDAIEML+KKVDTLTKA+EVE KKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANS QMLPAR+
Sbjct: 1 MEDVYGEEGGLTVAREMSTGDSGGNARFSASEVTPTPLTVSASFREGRSSSRRRAPVRPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLMQTVHELEEAVLAGGATANVVRDYQRKVQEMIEERKTLDRELARAKVTANRVALVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLVISERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNGRRQSLGGADNISKLTSNGFLPRRLPSFQLRSSGTTTMLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEETKASETSNSNWKADADEKPNDITEPEKEDTVPGLLHDILQKEVIALRKAGNEKDQSLKDKDDAIEMLSKKVDTLTKALEVEGKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSPQMLPART 619
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GG26 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5939722.1}))
HSP 1 Score: 979.548 bits (2531), Expect = 0.000e+0
Identity = 505/620 (81.45%), Postives = 542/620 (87.42%), Query Frame = 0
Match: A0A7J7GG26 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5939722.1}))
HSP 1 Score: 979.548 bits (2531), Expect = 0.000e+0
Identity = 505/620 (81.45%), Postives = 542/620 (87.42%), Query Frame = 0
Query: 1 MEDLYGDEGGLTVAREMSAGESGGNARFPASEVTPAPLTVSASFREGRSSSRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK---------------GEMQQLRDKLVITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNG--RRQSLGGVDNISKLTSNGFLPRRSPSFQLRSSGTSTVLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPEKEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQMLPAR 603
ME+L GD GG T +MS G GN R A TP + +SF+EG SSRRRAP R PS+DAD+F++L+HGSDPVKVELNRLENEVRDKDREL EA AEIKAL+LSERLREKAVEELTEEL +V+EKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELK+ARQEIAKLQDDNKALDRLTKSKEAALL+AERTVQ+ALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTV ELEEAVLAGGA AN VRDYQRKVQEMNEERKTLDRELARAKVTANRVA VVANEWKD+NDK GEMQQLRDKL ITERAA+SEAQLKEK+QLRLKVLEE LR N+ +R+T +G+S SNG RRQSLGG DNISKLT NGFLP+RSPSFQLRSSGTS+VLKHAKGTSKSFDGGTRSLDRGKILLNG+GP+FN SCE K +E ++ WK P+EKP DF + EDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVA+MRVDKEHENRAKRF G S+GP N+SQ+LP R
Sbjct: 1 MEELSGD-GGWTA--DMSFG---GNVRLTAEAATPL-MASGSSFKEGGKSSRRRAPQRQPSMDADEFINLLHGSDPVKVELNRLENEVRDKDRELGEANAEIKALRLSERLREKAVEELTEELARVEEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKIARQEIAKLQDDNKALDRLTKSKEAALLDAERTVQIALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDSNDKVMPVKQWLEERRFLQGEMQQLRDKLTITERAAKSEAQLKEKYQLRLKVLEENLRLSNSSNRSTPEGKSVSNGLSRRQSLGGADNISKLTCNGFLPKRSPSFQLRSSGTSSVLKHAKGTSKSFDGGTRSLDRGKILLNGTGPNFNLSQSCEGTKEAEVNSNTWKGNPEEKPNDFLPMDTEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVDKEHENRAKRF-GNSKGPVNNSQLLPGR 612
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068V8P9 ((Uncharacterized protein {ECO:0000313|EMBL:CDP16283.1}))
HSP 1 Score: 978.778 bits (2529), Expect = 0.000e+0
Identity = 505/621 (81.32%), Postives = 546/621 (87.92%), Query Frame = 0
Match: A0A068V8P9 ((Uncharacterized protein {ECO:0000313|EMBL:CDP16283.1}))
HSP 1 Score: 978.778 bits (2529), Expect = 0.000e+0
Identity = 505/621 (81.32%), Postives = 546/621 (87.92%), Query Frame = 0
Query: 1 MEDLYGDEGGLTVAREMSAGESGGNARFPASEVTPAPLTVSASFREGR-SSSRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK---------------GEMQQLRDKLVITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNG--RRQSLGGVDNISKLTSNGFLPRRSPSFQLRSSGTSTVLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPEKEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQMLPAR 603
M ++ GD GG+T E+SAGE+ NAR SEV PLTVSASF+EG+ S+SRRRA RP SLDAD+F++L+HGSDPVK+ELNRLENEVRDKDREL EAQAEIKAL+ SERLREKAVEELT+EL +V+EKLKLTESLLES+NLEIKKINDEKKASMAAQFAAEATLRRVH+AQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLE ERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK+HRQKVAEVEKLTQTV ELEEAVLAGGA AN VRDYQRKVQEMNEERKTLDRELARAKVTANRVA VVANEWKDANDK GEMQQLRDKL I+ER A+SEAQLKEK+QLRLKVLEETLRSPN+ RNT DGRS+SNG RRQSLGG +NISKLTSNGFLP+RSPSFQ+RSSG+STVLKHAKGTSKSFDGG+RSLDR KILLNG+GP+F SC+ K SE S WK DEKP D E +DTVPGLL+DLLQKEV+ALRKAGHEKDQSLKDKDDAIEMLAKKV+TLTKAMEVEAKKMRREVAAMEKEVA+MRVDKEHENRAKRF S+GP NSSQ++P R
Sbjct: 1 MAEVTGD-GGVTA--ELSAGENYSNARV-TSEVNVTPLTVSASFKEGKGSTSRRRASVRP-SLDADEFINLLHGSDPVKLELNRLENEVRDKDRELGEAQAEIKALRFSERLREKAVEELTDELARVEEKLKLTESLLESRNLEIKKINDEKKASMAAQFAAEATLRRVHSAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEVERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKLHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAISERTAKSEAQLKEKYQLRLKVLEETLRSPNSSVRNTPDGRSSSNGLSRRQSLGGAENISKLTSNGFLPKRSPSFQMRSSGSSTVLKHAKGTSKSFDGGSRSLDRSKILLNGTGPNFKMSQSCDGTKDSEPQKSTWKENQDEKPSDVQVTETDDTVPGLLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVDKEHENRAKRF-ANSKGPVNSSQLIPGR 615
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V130 ((microtubule-associated protein 70-2-like {ECO:0000313|RefSeq:XP_027096548.1}))
HSP 1 Score: 978.393 bits (2528), Expect = 0.000e+0
Identity = 506/621 (81.48%), Postives = 546/621 (87.92%), Query Frame = 0
Match: A0A6P6V130 ((microtubule-associated protein 70-2-like {ECO:0000313|RefSeq:XP_027096548.1}))
HSP 1 Score: 978.393 bits (2528), Expect = 0.000e+0
Identity = 506/621 (81.48%), Postives = 546/621 (87.92%), Query Frame = 0
Query: 1 MEDLYGDEGGLTVAREMSAGESGGNARFPASEVTPAPLTVSASFREGR-SSSRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK---------------GEMQQLRDKLVITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNG--RRQSLGGVDNISKLTSNGFLPRRSPSFQLRSSGTSTVLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPEKEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQMLPAR 603
M ++ GD GG+T E+SAGE+ GNAR SEV PLTVSASF+EG+ S+SRRRA RP SLDAD+F++L+HGSDPVK+ELNRLENEVRDKDREL EAQAEIKAL+ SERLREKAVEELT+EL +V+EKLKLTESLLES+NLEIKKINDEKKASMAAQFAAEATLRRVH AQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK+HRQKVAEVEKLTQTV ELEEAVLAGGA AN VRDYQRKVQEMNEERKTLDRELARAKVTANRVA VVANEWKDANDK GEMQQLRDKL I+ER A+SEAQLKEK+QLRLKVLEETLRSPN+ RNT DGRS+SNG RRQSLGG +NISKLTSNGFLP+RSPSFQ+RSSG+STVLKHAKGTSKSFDGG+RSLDR KILLNG+GP+F SC+ K SE S WK DEKP D E +DTV GLL+DLLQKEV+ALRKAGHEKDQSLKDKDDAIEMLAKKV+TLTKAMEVEAKKMRREVAAMEKEVA+MRVDKEHENRAKRF S+GP NSSQ++P R
Sbjct: 1 MAEVTGD-GGVTA--ELSAGENYGNARV-TSEVNVTPLTVSASFKEGKGSTSRRRASVRP-SLDADEFINLLHGSDPVKLELNRLENEVRDKDRELGEAQAEIKALRFSERLREKAVEELTDELARVEEKLKLTESLLESRNLEIKKINDEKKASMAAQFAAEATLRRVHNAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKLHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAISERTAKSEAQLKEKYQLRLKVLEETLRSPNSSVRNTPDGRSSSNGLSRRQSLGGAENISKLTSNGFLPKRSPSFQMRSSGSSTVLKHAKGTSKSFDGGSRSLDRSKILLNGTGPNFKMSQSCDGTKDSEPQKSTWKENQDEKPSDVQVTETDDTVLGLLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVDKEHENRAKRF-ANSKGPVNSSQLIPGR 615
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V9K2 ((microtubule-associated protein 70-2-like {ECO:0000313|RefSeq:XP_027099386.1}))
HSP 1 Score: 976.852 bits (2524), Expect = 0.000e+0
Identity = 505/621 (81.32%), Postives = 546/621 (87.92%), Query Frame = 0
Match: A0A6P6V9K2 ((microtubule-associated protein 70-2-like {ECO:0000313|RefSeq:XP_027099386.1}))
HSP 1 Score: 976.852 bits (2524), Expect = 0.000e+0
Identity = 505/621 (81.32%), Postives = 546/621 (87.92%), Query Frame = 0
Query: 1 MEDLYGDEGGLTVAREMSAGESGGNARFPASEVTPAPLTVSASFREGR-SSSRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK---------------GEMQQLRDKLVITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNG--RRQSLGGVDNISKLTSNGFLPRRSPSFQLRSSGTSTVLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPEKEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQMLPAR 603
M ++ GD GG+T E+SAGE+ GNAR SEV PLTVSASF+EG+ S+SRRRA RP SLDAD+F++L+HGSDPVK+ELNRLENEVRDKDREL EAQAEIKAL+ SERLREKAVEELT+EL +V+EKLKLTESLLES+NLEIKKINDEKKASMAAQFAAEATLRRVH AQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK+HRQKVAEVEKLTQTV ELEEAVLAGGA AN VRDYQRKVQEMNEERKTLDRELARAKVTANRVA VVANEWKDANDK GEMQQLRDKL I+ER A+SEAQLKEK+QLRLKVLEETLRSPN+ RNT DGRS+SNG RRQSLGG +NISKLTSNGFLP+RSPSFQ+RSSG+STVLKHAKGTSKSFDGG+RSLDR KILLNG+GP+F SC+ K SE S WK DEKP D E +DTVPGLL+DLLQKEV+ALRKAGHEKDQSLKDKDDAIEMLAKKV+TLTKAMEVEAKKMRREVAAMEKEVA+MRV+KEHENRAKRF +GP NSSQ++P R
Sbjct: 1 MAEVTGD-GGVTA--ELSAGENYGNARV-TSEVNVTPLTVSASFKEGKGSTSRRRASVRP-SLDADEFINLLHGSDPVKLELNRLENEVRDKDRELGEAQAEIKALRFSERLREKAVEELTDELARVEEKLKLTESLLESRNLEIKKINDEKKASMAAQFAAEATLRRVHNAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKLHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAISERTAKSEAQLKEKYQLRLKVLEETLRSPNSSVRNTPDGRSSSNGLSRRQSLGGAENISKLTSNGFLPKRSPSFQMRSSGSSTVLKHAKGTSKSFDGGSRSLDRSKILLNGTGPNFKMSQSCDGTKDSEPQKSTWKENQDEKPSDVQVTETDDTVPGLLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVEKEHENRAKRF-ANPKGPVNSSQLIPGR 615
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AS12 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8532502.1}))
HSP 1 Score: 962.6 bits (2487), Expect = 0.000e+0
Identity = 503/632 (79.59%), Postives = 546/632 (86.39%), Query Frame = 0
Match: A0A5J5AS12 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8532502.1}))
HSP 1 Score: 962.6 bits (2487), Expect = 0.000e+0
Identity = 503/632 (79.59%), Postives = 546/632 (86.39%), Query Frame = 0
Query: 1 MEDLYGDEGGLTVAR---EMSAGESGGNARFPASE--------VTPAPLTVSASFREGRSSSRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK---------------GEMQQLRDKLVITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNG--RRQSLGGVDNISKLTSNGFLPRRSPSFQLRSSGTSTVLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPEKEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQMLPARS 604
M ++YGD ++ A E+S+GE+G N R + P PLT+S SF+EG+SS RRRAP RP SLDAD+F++L+HGSDPVKVELNRLENEVRDKDREL +AQAEIKAL+LSERLREKAVEELTEEL +++EKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQ ALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTV ELEEAVLAGGA AN VRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK G+MQQLRDKL I ER A+SEAQLKEK+QLRLKVLEE+LRSPN SR+T +GRS SNG RRQSL G DNISKLTSNGFLP+RSPSFQ+RSSGTS+VLKHAKGTSKSFDGGTRSLDRGK+LLNG G + N+ SCE + SE ++ W+ PDEKP DF A + EDTVPGLL+DLLQKEVIALRKA HEKDQSLKDKDDAIEM AKKVDTLTKA+EVEAKKMRR VAAMEKEVA+MRV+KEHENRAKRF G S+GP NSSQ+LP RS
Sbjct: 1 MAEIYGDGESVSPASWTPELSSGENGSNVRLTVANEAAFATATPAPPPLTMSGSFKEGKSS-RRRAPLRP-SLDADEFINLLHGSDPVKVELNRLENEVRDKDRELGDAQAEIKALRLSERLREKAVEELTEELARMEEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQFALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGDMQQLRDKLTIAERTAKSEAQLKEKYQLRLKVLEESLRSPNNASRSTPEGRSISNGPSRRQSLSGADNISKLTSNGFLPKRSPSFQMRSSGTSSVLKHAKGTSKSFDGGTRSLDRGKVLLNGVGLNLNFSQSCEGTRDSE-ASTTWRGNPDEKPSDFLAVDTEDTVPGLLYDLLQKEVIALRKASHEKDQSLKDKDDAIEMSAKKVDTLTKALEVEAKKMRRNVAAMEKEVAAMRVEKEHENRAKRF-GNSKGPVNSSQLLPGRS 628
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D8ZD13 ((Uncharacterized protein {ECO:0000313|EMBL:TEY36760.1}))
HSP 1 Score: 959.903 bits (2480), Expect = 0.000e+0
Identity = 500/622 (80.39%), Postives = 543/622 (87.30%), Query Frame = 0
Match: A0A4D8ZD13 ((Uncharacterized protein {ECO:0000313|EMBL:TEY36760.1}))
HSP 1 Score: 959.903 bits (2480), Expect = 0.000e+0
Identity = 500/622 (80.39%), Postives = 543/622 (87.30%), Query Frame = 0
Query: 1 MEDLYGDEGGLTVAREMSAGESGGNARFPASEVTPAPLTVSASFREGRS--SSRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK---------------GEMQQLRDKLVITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNG--RRQSLGGVDNISKLTSNGFLPRRSPSFQLRSSGTSTVLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPEKEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQMLPAR 603
M ++ G EG A E + GE+ GNA+ P++ PLTVSASF+EG S SSRRRA RP SLDAD+F++L+HGSDPVKVELNRLENEVRDKDREL EA ++IKALKLSERLREKAVEELT+EL KVDEKLKLTESLLESKNLEIK+INDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQE++KLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTV ELEEAVLAGGA AN VRDYQRKVQEMNEERKTLDRELARAKVTANRVA VVANEWKDANDK GEMQ L+DKL ITERAARSEAQLKEK+QLRLKVLEETLRSPN +R TS+GRS+SNG RRQSLGG DNISKLTSNGFLP+RSPSFQLRSSG+S+VLKHAKGTSKSFDGG+RSLDR K+LLNG GP+F SC+ K +ET +S WKA EKP D A EKED+VPGLL+D+LQKEVI+LRKA HEKDQSLKDKDDAIEMLA+KV+TLTKAMEVEAKKMRREVAAMEKEVA+MRVDKEH+N++KR G S+ NSSQMLP R
Sbjct: 1 MAEVSG-EGSAAFAAERNPGEASGNAQ-PST-----PLTVSASFKEGSSKGSSRRRASVRP-SLDADEFINLLHGSDPVKVELNRLENEVRDKDRELGEAHSQIKALKLSERLREKAVEELTDELGKVDEKLKLTESLLESKNLEIKRINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEMSKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQTLKDKLAITERAARSEAQLKEKYQLRLKVLEETLRSPNTATRGTSEGRSSSNGPLRRQSLGGADNISKLTSNGFLPKRSPSFQLRSSGSSSVLKHAKGTSKSFDGGSRSLDRSKVLLNGLGPNFKQSQSCDGTKETETQSSAWKATQVEKPSDIQATEKEDSVPGLLYDMLQKEVISLRKACHEKDQSLKDKDDAIEMLARKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVDKEHDNKSKRL-GNSKSSVNSSQMLPGR 613
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HHI1 ((Uncharacterized protein {ECO:0000313|EMBL:PIN16948.1}))
HSP 1 Score: 956.436 bits (2471), Expect = 0.000e+0
Identity = 493/622 (79.26%), Postives = 539/622 (86.66%), Query Frame = 0
Match: A0A2G9HHI1 ((Uncharacterized protein {ECO:0000313|EMBL:PIN16948.1}))
HSP 1 Score: 956.436 bits (2471), Expect = 0.000e+0
Identity = 493/622 (79.26%), Postives = 539/622 (86.66%), Query Frame = 0
Query: 1 MEDLYGDEGGLTVAREMSAGESGGNARFPASEVTPAPLTVSASFREG-RSSSRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK---------------GEMQQLRDKLVITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNG--RRQSLGGVDNISKLTSNGFLPRRSPSFQLRSSGTSTVLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPEKEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQMLPARS 604
M ++ G EG + VA E++ E+ GNA+ + PLTVSASF+EG + SSRRRA RP SLDAD+F +L+HGSDPVK+ELNRLENEVRDK+REL EAQ++IKALKLSERLREKAVEELTEEL KV+EKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALL+AERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTV ELEEAVLAGGA N VRDYQRKVQEMNEERKTLDRELARAKVTANRVA VVANEWKDANDK GEMQQLRDKL I ERAA+SEAQLKEK+ LRL+VLEETLRSPN ++R T+DGR++SNG RRQSLGG +NISKLTSNGFLP+RSPSFQLRSSG+STVLKHAKGTSKSFDGG+RSLDR K+LLNG GP+F SC+ K +ET S WKA +EK D + EDTVPGLL+DLLQKEV+ALRKAGHEKDQSLKDKDDAIEMLAKKV+TLTKAMEVEAKKMRREVAAMEKEVA+MRV+KE EN+ KR G S+ NSSQ+LP R+
Sbjct: 1 MAEVSG-EGSVGVAAELTPAETSGNAQ------SVTPLTVSASFKEGGKGSSRRRASVRP-SLDADEFFNLLHGSDPVKLELNRLENEVRDKERELGEAQSQIKALKLSERLREKAVEELTEELSKVEEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLDAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAATNAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERAAKSEAQLKEKYHLRLRVLEETLRSPNTVTRGTADGRTSSNGSSRRQSLGGAENISKLTSNGFLPKRSPSFQLRSSGSSTVLKHAKGTSKSFDGGSRSLDRSKVLLNGLGPNFKQSQSCDGTKETETQGSTWKATQEEKGSDIQVTDTEDTVPGLLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVEKEQENKDKRL-GNSKSSVNSSQLLPGRT 613
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PGN6 ((Microtubule-associated protein like {ECO:0000313|EMBL:PSR91036.1}))
HSP 1 Score: 950.658 bits (2456), Expect = 0.000e+0
Identity = 503/630 (79.84%), Postives = 544/630 (86.35%), Query Frame = 0
Match: A0A2R6PGN6 ((Microtubule-associated protein like {ECO:0000313|EMBL:PSR91036.1}))
HSP 1 Score: 950.658 bits (2456), Expect = 0.000e+0
Identity = 503/630 (79.84%), Postives = 544/630 (86.35%), Query Frame = 0
Query: 1 MEDLYGDEGGLTVAREMSAGESGGNARFP------ASEVTPAPLTVSASFREGRSSSRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK---------------GEMQQLRDKLVITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNG--RRQSLGGVDNISKLTSNGFLPRRSPSFQLR---SSGTSTVLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPEKEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQMLPARS 604
ME+ GD GG++ A +M E+GGN R P A T PL VS SF+EG+SS RRRAP RP S+DAD+F++L+HGSDPVKVELNRLENEVRDKDREL +A AEIKAL+LSERLREKAVEELTEEL KVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTV ELEEAVLAGGA AN VRDYQRKVQEMNEERKTLDRELARAKVTANRVA VVANEWKDANDK GEMQQLRDKL + +RAA+SEAQLKEKFQLRLKVLEE+LR + +RNTS+G+ SNG RRQSLGG DNISKLTSNG LP+RSPSFQLR S+G+S+VLKHAKGTSKSFDGGTRSLDRGKIL NG+GP+FN SCE K +E ++ WK P+EKP DF A + EDTV GLL+DLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVA+MRV+KEHENRAKR G ++ P +SSQ+LP R+
Sbjct: 9 MEEFSGD-GGVSPAVDM--WENGGNVRPPSVSEAVAMMATVTPLMVSGSFKEGKSS-RRRAPQRP-SMDADEFINLLHGSDPVKVELNRLENEVRDKDRELGDAHAEIKALRLSERLREKAVEELTEELAKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLDERRFLQGEMQQLRDKLAVVDRAAKSEAQLKEKFQLRLKVLEESLRLSTSSNRNTSEGKIVSNGPSRRQSLGGADNISKLTSNGILPKRSPSFQLRSSLSAGSSSVLKHAKGTSKSFDGGTRSLDRGKILFNGTGPNFNLSQSCEGTKEAEVNSNTWKGNPEEKPNDFGAVDVEDTVAGLLYDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKEHENRAKRL-GNAKAPVSSSQLLPGRN 632
BLAST of DCAR_023575 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DQX5 ((Microtubule-associated proteins 70-1 {ECO:0000313|EMBL:GFS40523.1}))
HSP 1 Score: 950.273 bits (2455), Expect = 0.000e+0
Identity = 504/633 (79.62%), Postives = 546/633 (86.26%), Query Frame = 0
Match: A0A7J0DQX5 ((Microtubule-associated proteins 70-1 {ECO:0000313|EMBL:GFS40523.1}))
HSP 1 Score: 950.273 bits (2455), Expect = 0.000e+0
Identity = 504/633 (79.62%), Postives = 546/633 (86.26%), Query Frame = 0
Query: 1 MEDLYGDEGGLTVAREMSAGESGGNARFP----ASEVTPAPLTVSASFREGRSSSRRRAPARPPSLDADDFMSLMHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERLREKAVEELTEELEKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVHELEEAVLAGGATANVVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDK---------------GEMQQLRDKLVITERAARSEAQLKEKFQLRLKVLEETLRSPNAISRNTSDGRSASNG--RRQSLGGVDNISKLTSNGFLPRRSPSFQLR---SSGTSTVLKHAKGTSKSFDGGTRSLDRGKILLNGSGPSFNYRDSCEEAKASETCNSNWKAEPDEKPIDFTAPEKEDTVPGLLHDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRVDKEHENRAKRFGGGSRGPANSSQMLPARSKCSLS 609
ME+ +GD GG++ +M E+GGN R P A +T PLTVS SF+EG+ S RRRAP RP S+DAD+F++L+HGSDPVKVELNRLENEVRDKDREL +A AEIKAL+LSERLREKAVEELTEEL KVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTV ELEEAVLAGGA AN VRDYQRKVQEMNEERKTLDRELARAKVTANRVA VVANEWKDANDK GEMQQLRDKL + +RAA+SEAQLKEK+QLRLKVLEE+LR + +RNT +G+ SNG RRQSLGG DNISKLTSNGFLP+RSPSFQLR SSG+S+VLKHAKGTSKSFDGGTRSLDRGK+LLNG GP+FN SCE K +E ++ WK P+EKP DF A + EDTV GLL+DLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVA+MRV+KEHENRAKR G ++ P +SSQ+LP R S S
Sbjct: 9 MEEFFGD-GGVSPPVDM--WENGGNVRPPSVSEAVVMTATPLTVSGSFKEGKGS-RRRAPLRP-SMDADEFINLLHGSDPVKVELNRLENEVRDKDRELGDAHAEIKALRLSERLREKAVEELTEELAKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAVVDRAAKSEAQLKEKYQLRLKVLEESLRLATSGNRNTLEGKIVSNGPSRRQSLGGADNISKLTSNGFLPKRSPSFQLRSSLSSGSSSVLKHAKGTSKSFDGGTRSLDRGKLLLNGMGPNFNLSQSCEGTKETEVNSNTWKENPEEKPNDFVAVDVEDTVAGLLYDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKEHENRAKRL-GNAKAPVSSSQLLPGRCVSSSS 635
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5B8J5 | E-Value: 0.000e+0, PID: 92.73 | (Uncharacterized protein {ECO:0000313|EMBL:KAF1001... [more] |
| A0A7J7GG26 | E-Value: 0.000e+0, PID: 81.45 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5939... [more] |
| A0A068V8P9 | E-Value: 0.000e+0, PID: 81.32 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1628... [more] |
| A0A6P6V130 | E-Value: 0.000e+0, PID: 81.48 | (microtubule-associated protein 70-2-like {ECO:000... [more] |
| A0A6P6V9K2 | E-Value: 0.000e+0, PID: 81.32 | (microtubule-associated protein 70-2-like {ECO:000... [more] |
| A0A5J5AS12 | E-Value: 0.000e+0, PID: 79.59 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8532... [more] |
| A0A4D8ZD13 | E-Value: 0.000e+0, PID: 80.39 | (Uncharacterized protein {ECO:0000313|EMBL:TEY3676... [more] |
| A0A2G9HHI1 | E-Value: 0.000e+0, PID: 79.26 | (Uncharacterized protein {ECO:0000313|EMBL:PIN1694... [more] |
| A0A2R6PGN6 | E-Value: 0.000e+0, PID: 79.84 | (Microtubule-associated protein like {ECO:0000313|... [more] |
| A0A7J0DQX5 | E-Value: 0.000e+0, PID: 79.62 | (Microtubule-associated proteins 70-1 {ECO:0000313... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |